Multiple sequence alignment - TraesCS2B01G428400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G428400 chr2B 100.000 2699 0 0 1 2699 615586160 615588858 0 4985
1 TraesCS2B01G428400 chr2B 97.803 1730 38 0 1 1730 741239880 741241609 0 2985
2 TraesCS2B01G428400 chr2B 97.457 1730 44 0 1 1730 741210147 741211876 0 2952
3 TraesCS2B01G428400 chr2B 97.457 1730 42 2 1 1730 564814266 564815993 0 2950
4 TraesCS2B01G428400 chr2B 96.933 1728 52 1 3 1730 318084780 318083054 0 2896
5 TraesCS2B01G428400 chr2B 94.138 580 30 2 1741 2320 788673885 788673310 0 880
6 TraesCS2B01G428400 chr2B 90.199 602 59 0 1732 2333 769520863 769521464 0 785
7 TraesCS2B01G428400 chr1B 97.748 1732 37 2 1 1731 20560151 20558421 0 2981
8 TraesCS2B01G428400 chr1B 97.514 1730 42 1 1 1730 321010176 321011904 0 2955
9 TraesCS2B01G428400 chr1B 96.186 603 20 3 1741 2342 51114527 51113927 0 983
10 TraesCS2B01G428400 chr5B 97.564 1724 42 0 3 1726 610025829 610024106 0 2952
11 TraesCS2B01G428400 chr6B 97.933 1548 31 1 183 1730 131696808 131695262 0 2680
12 TraesCS2B01G428400 chr7B 89.769 1730 176 1 1 1730 60137092 60138820 0 2213
13 TraesCS2B01G428400 chr4D 95.431 591 27 0 1732 2322 469845883 469845293 0 942
14 TraesCS2B01G428400 chr3B 95.093 591 29 0 1732 2322 144033614 144033024 0 931
15 TraesCS2B01G428400 chrUn 95.093 591 28 1 1732 2322 34476007 34475418 0 929
16 TraesCS2B01G428400 chr2A 94.310 580 29 2 1745 2322 679844617 679844040 0 885
17 TraesCS2B01G428400 chr3A 93.440 564 35 2 1732 2294 618029795 618030357 0 835
18 TraesCS2B01G428400 chr7D 91.261 595 51 1 1732 2325 162764073 162764667 0 809


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G428400 chr2B 615586160 615588858 2698 False 4985 4985 100.000 1 2699 1 chr2B.!!$F2 2698
1 TraesCS2B01G428400 chr2B 741239880 741241609 1729 False 2985 2985 97.803 1 1730 1 chr2B.!!$F4 1729
2 TraesCS2B01G428400 chr2B 741210147 741211876 1729 False 2952 2952 97.457 1 1730 1 chr2B.!!$F3 1729
3 TraesCS2B01G428400 chr2B 564814266 564815993 1727 False 2950 2950 97.457 1 1730 1 chr2B.!!$F1 1729
4 TraesCS2B01G428400 chr2B 318083054 318084780 1726 True 2896 2896 96.933 3 1730 1 chr2B.!!$R1 1727
5 TraesCS2B01G428400 chr2B 788673310 788673885 575 True 880 880 94.138 1741 2320 1 chr2B.!!$R2 579
6 TraesCS2B01G428400 chr2B 769520863 769521464 601 False 785 785 90.199 1732 2333 1 chr2B.!!$F5 601
7 TraesCS2B01G428400 chr1B 20558421 20560151 1730 True 2981 2981 97.748 1 1731 1 chr1B.!!$R1 1730
8 TraesCS2B01G428400 chr1B 321010176 321011904 1728 False 2955 2955 97.514 1 1730 1 chr1B.!!$F1 1729
9 TraesCS2B01G428400 chr1B 51113927 51114527 600 True 983 983 96.186 1741 2342 1 chr1B.!!$R2 601
10 TraesCS2B01G428400 chr5B 610024106 610025829 1723 True 2952 2952 97.564 3 1726 1 chr5B.!!$R1 1723
11 TraesCS2B01G428400 chr6B 131695262 131696808 1546 True 2680 2680 97.933 183 1730 1 chr6B.!!$R1 1547
12 TraesCS2B01G428400 chr7B 60137092 60138820 1728 False 2213 2213 89.769 1 1730 1 chr7B.!!$F1 1729
13 TraesCS2B01G428400 chr4D 469845293 469845883 590 True 942 942 95.431 1732 2322 1 chr4D.!!$R1 590
14 TraesCS2B01G428400 chr3B 144033024 144033614 590 True 931 931 95.093 1732 2322 1 chr3B.!!$R1 590
15 TraesCS2B01G428400 chrUn 34475418 34476007 589 True 929 929 95.093 1732 2322 1 chrUn.!!$R1 590
16 TraesCS2B01G428400 chr2A 679844040 679844617 577 True 885 885 94.310 1745 2322 1 chr2A.!!$R1 577
17 TraesCS2B01G428400 chr3A 618029795 618030357 562 False 835 835 93.440 1732 2294 1 chr3A.!!$F1 562
18 TraesCS2B01G428400 chr7D 162764073 162764667 594 False 809 809 91.261 1732 2325 1 chr7D.!!$F1 593

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
940 941 1.90699 TTTCAATTTTACGGGGCCGA 58.093 45.0 0.0 0.0 42.83 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2610 2614 0.031857 TTTGTTGTGCTTGCATCCGG 59.968 50.0 0.0 0.0 0.0 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
179 180 3.057526 GCTTGGCGTTTATTGGTCTTTCT 60.058 43.478 0.00 0.00 0.00 2.52
292 293 3.641046 TGGCAAGGTATTATGCATGGTT 58.359 40.909 10.16 0.00 44.32 3.67
325 326 3.852858 AAAAGGGGGTCATTTGGAGAT 57.147 42.857 0.00 0.00 0.00 2.75
486 487 4.871933 TGAGCATCTTATTCGGCATCTA 57.128 40.909 0.00 0.00 34.92 1.98
696 697 9.520515 GAAAGGAGGCTATGGAATATTATTTGA 57.479 33.333 0.00 0.00 0.00 2.69
731 732 7.436933 GTCCCTCAGAAAATCAGAATTTTTGT 58.563 34.615 2.31 0.00 43.48 2.83
908 909 5.303165 GGTAAGGGAGGTATGGAATTTACG 58.697 45.833 0.00 0.00 0.00 3.18
940 941 1.906990 TTTCAATTTTACGGGGCCGA 58.093 45.000 0.00 0.00 42.83 5.54
1238 1239 4.278669 TCCCGCTACAGAGATCATTAAGAC 59.721 45.833 0.00 0.00 0.00 3.01
1309 1310 0.828022 CGTGGCCAGGAACCATACTA 59.172 55.000 20.97 0.00 39.95 1.82
1355 1356 5.185056 GGGATTATATTGGGGTGTGCAATAC 59.815 44.000 0.00 0.00 0.00 1.89
1368 1369 1.090052 GCAATACCGCGGAAGAAGCT 61.090 55.000 35.90 10.28 0.00 3.74
1433 1434 4.019174 CTCCACAAGGCCATCATTTTAGT 58.981 43.478 5.01 0.00 33.74 2.24
1495 1496 3.847184 TCTTCTAGACAGGTCTCCTCTGA 59.153 47.826 5.00 0.00 40.93 3.27
1558 1559 9.358406 TGATGATAAATTGCAAGATATCCAAGT 57.642 29.630 22.04 11.67 0.00 3.16
1730 1731 4.080807 TGGGAGGGGTTTTCAAAAAGAAAC 60.081 41.667 0.00 0.00 45.48 2.78
1739 1740 7.995289 GGTTTTCAAAAAGAAACCCAATGAAT 58.005 30.769 6.72 0.00 45.36 2.57
1807 1808 7.936847 CCATTATACTTGGTGATTTAGGCTACA 59.063 37.037 0.00 0.00 0.00 2.74
1928 1931 3.873952 GCAAGTGTCCTATCTTGATGTCC 59.126 47.826 8.74 0.00 42.22 4.02
2182 2186 4.462280 GGAACGACCGGGCCGATT 62.462 66.667 30.79 14.50 0.00 3.34
2322 2326 4.095632 CACGGTTGCCACATACATATTTCA 59.904 41.667 0.00 0.00 0.00 2.69
2364 2368 7.493743 TTTTGGACATGATTTTTGACATTGG 57.506 32.000 0.00 0.00 0.00 3.16
2365 2369 5.149973 TGGACATGATTTTTGACATTGGG 57.850 39.130 0.00 0.00 0.00 4.12
2366 2370 4.592351 TGGACATGATTTTTGACATTGGGT 59.408 37.500 0.00 0.00 0.00 4.51
2367 2371 5.777223 TGGACATGATTTTTGACATTGGGTA 59.223 36.000 0.00 0.00 0.00 3.69
2368 2372 6.440010 TGGACATGATTTTTGACATTGGGTAT 59.560 34.615 0.00 0.00 0.00 2.73
2369 2373 6.757947 GGACATGATTTTTGACATTGGGTATG 59.242 38.462 0.00 0.00 40.26 2.39
2370 2374 6.108015 ACATGATTTTTGACATTGGGTATGC 58.892 36.000 0.00 0.00 37.81 3.14
2371 2375 4.742417 TGATTTTTGACATTGGGTATGCG 58.258 39.130 0.00 0.00 37.81 4.73
2372 2376 3.584406 TTTTTGACATTGGGTATGCGG 57.416 42.857 0.00 0.00 37.81 5.69
2373 2377 2.498644 TTTGACATTGGGTATGCGGA 57.501 45.000 0.00 0.00 37.81 5.54
2374 2378 2.036958 TTGACATTGGGTATGCGGAG 57.963 50.000 0.00 0.00 37.81 4.63
2375 2379 0.908910 TGACATTGGGTATGCGGAGT 59.091 50.000 0.00 0.00 37.81 3.85
2376 2380 1.134521 TGACATTGGGTATGCGGAGTC 60.135 52.381 0.00 0.00 37.81 3.36
2377 2381 0.908910 ACATTGGGTATGCGGAGTCA 59.091 50.000 0.00 0.00 37.81 3.41
2378 2382 1.280710 ACATTGGGTATGCGGAGTCAA 59.719 47.619 0.00 0.00 37.81 3.18
2379 2383 2.290641 ACATTGGGTATGCGGAGTCAAA 60.291 45.455 0.00 0.00 37.81 2.69
2380 2384 2.570415 TTGGGTATGCGGAGTCAAAA 57.430 45.000 0.00 0.00 0.00 2.44
2381 2385 2.570415 TGGGTATGCGGAGTCAAAAA 57.430 45.000 0.00 0.00 0.00 1.94
2405 2409 9.950680 AAAACTATTTTTATCACACACACAGAG 57.049 29.630 0.00 0.00 32.90 3.35
2406 2410 8.677148 AACTATTTTTATCACACACACAGAGT 57.323 30.769 0.00 0.00 0.00 3.24
2407 2411 8.677148 ACTATTTTTATCACACACACAGAGTT 57.323 30.769 0.00 0.00 0.00 3.01
2408 2412 9.772973 ACTATTTTTATCACACACACAGAGTTA 57.227 29.630 0.00 0.00 0.00 2.24
2437 2441 5.681337 TTTTGTTGCACGATGATGTAAGA 57.319 34.783 0.00 0.00 0.00 2.10
2438 2442 4.661993 TTGTTGCACGATGATGTAAGAC 57.338 40.909 0.00 0.00 0.00 3.01
2439 2443 3.000041 TGTTGCACGATGATGTAAGACC 59.000 45.455 0.00 0.00 0.00 3.85
2440 2444 3.262420 GTTGCACGATGATGTAAGACCT 58.738 45.455 0.00 0.00 0.00 3.85
2441 2445 4.081917 TGTTGCACGATGATGTAAGACCTA 60.082 41.667 0.00 0.00 0.00 3.08
2442 2446 4.729227 TGCACGATGATGTAAGACCTAA 57.271 40.909 0.00 0.00 0.00 2.69
2443 2447 5.079689 TGCACGATGATGTAAGACCTAAA 57.920 39.130 0.00 0.00 0.00 1.85
2444 2448 5.483811 TGCACGATGATGTAAGACCTAAAA 58.516 37.500 0.00 0.00 0.00 1.52
2445 2449 5.935206 TGCACGATGATGTAAGACCTAAAAA 59.065 36.000 0.00 0.00 0.00 1.94
2486 2490 9.216117 ACGATTAAACTATAAGCTGTTCTTTGT 57.784 29.630 0.00 0.00 36.25 2.83
2493 2497 9.593134 AACTATAAGCTGTTCTTTGTAGAGATG 57.407 33.333 0.00 0.00 36.25 2.90
2494 2498 8.200792 ACTATAAGCTGTTCTTTGTAGAGATGG 58.799 37.037 0.00 0.00 36.25 3.51
2495 2499 4.899352 AGCTGTTCTTTGTAGAGATGGT 57.101 40.909 0.00 0.00 0.00 3.55
2496 2500 4.573900 AGCTGTTCTTTGTAGAGATGGTG 58.426 43.478 0.00 0.00 0.00 4.17
2497 2501 4.040952 AGCTGTTCTTTGTAGAGATGGTGT 59.959 41.667 0.00 0.00 0.00 4.16
2498 2502 4.757149 GCTGTTCTTTGTAGAGATGGTGTT 59.243 41.667 0.00 0.00 0.00 3.32
2499 2503 5.239525 GCTGTTCTTTGTAGAGATGGTGTTT 59.760 40.000 0.00 0.00 0.00 2.83
2500 2504 6.238759 GCTGTTCTTTGTAGAGATGGTGTTTT 60.239 38.462 0.00 0.00 0.00 2.43
2501 2505 7.259290 TGTTCTTTGTAGAGATGGTGTTTTC 57.741 36.000 0.00 0.00 0.00 2.29
2502 2506 6.826231 TGTTCTTTGTAGAGATGGTGTTTTCA 59.174 34.615 0.00 0.00 0.00 2.69
2503 2507 7.338196 TGTTCTTTGTAGAGATGGTGTTTTCAA 59.662 33.333 0.00 0.00 0.00 2.69
2504 2508 8.352942 GTTCTTTGTAGAGATGGTGTTTTCAAT 58.647 33.333 0.00 0.00 0.00 2.57
2505 2509 9.567776 TTCTTTGTAGAGATGGTGTTTTCAATA 57.432 29.630 0.00 0.00 0.00 1.90
2506 2510 9.567776 TCTTTGTAGAGATGGTGTTTTCAATAA 57.432 29.630 0.00 0.00 0.00 1.40
2511 2515 9.573133 GTAGAGATGGTGTTTTCAATAATTTGG 57.427 33.333 0.00 0.00 33.44 3.28
2512 2516 8.193953 AGAGATGGTGTTTTCAATAATTTGGT 57.806 30.769 0.00 0.00 33.44 3.67
2513 2517 8.650490 AGAGATGGTGTTTTCAATAATTTGGTT 58.350 29.630 0.00 0.00 33.44 3.67
2514 2518 9.921637 GAGATGGTGTTTTCAATAATTTGGTTA 57.078 29.630 0.00 0.00 33.44 2.85
2515 2519 9.705290 AGATGGTGTTTTCAATAATTTGGTTAC 57.295 29.630 0.00 0.00 33.44 2.50
2516 2520 9.482627 GATGGTGTTTTCAATAATTTGGTTACA 57.517 29.630 0.00 0.00 33.44 2.41
2518 2522 9.838339 TGGTGTTTTCAATAATTTGGTTACATT 57.162 25.926 0.00 0.00 33.44 2.71
2520 2524 9.592720 GTGTTTTCAATAATTTGGTTACATTGC 57.407 29.630 0.00 0.00 33.44 3.56
2521 2525 9.330063 TGTTTTCAATAATTTGGTTACATTGCA 57.670 25.926 0.00 0.00 33.44 4.08
2524 2528 9.770097 TTTCAATAATTTGGTTACATTGCAAGA 57.230 25.926 4.94 0.00 33.44 3.02
2525 2529 9.770097 TTCAATAATTTGGTTACATTGCAAGAA 57.230 25.926 4.94 0.00 33.44 2.52
2526 2530 9.770097 TCAATAATTTGGTTACATTGCAAGAAA 57.230 25.926 4.94 0.00 33.44 2.52
2529 2533 9.941325 ATAATTTGGTTACATTGCAAGAAATCA 57.059 25.926 4.94 2.70 0.00 2.57
2530 2534 8.851541 AATTTGGTTACATTGCAAGAAATCAT 57.148 26.923 4.94 0.00 0.00 2.45
2531 2535 9.941325 AATTTGGTTACATTGCAAGAAATCATA 57.059 25.926 4.94 1.64 0.00 2.15
2532 2536 9.941325 ATTTGGTTACATTGCAAGAAATCATAA 57.059 25.926 4.94 4.12 0.00 1.90
2533 2537 8.755696 TTGGTTACATTGCAAGAAATCATAAC 57.244 30.769 4.94 5.67 0.00 1.89
2534 2538 7.890515 TGGTTACATTGCAAGAAATCATAACA 58.109 30.769 4.94 0.00 0.00 2.41
2535 2539 8.530311 TGGTTACATTGCAAGAAATCATAACAT 58.470 29.630 4.94 0.00 0.00 2.71
2540 2544 9.793252 ACATTGCAAGAAATCATAACATAACTC 57.207 29.630 4.94 0.00 0.00 3.01
2550 2554 9.561069 AAATCATAACATAACTCTATGGTCACC 57.439 33.333 0.00 0.00 39.49 4.02
2551 2555 7.062749 TCATAACATAACTCTATGGTCACCC 57.937 40.000 0.00 0.00 39.49 4.61
2552 2556 6.844388 TCATAACATAACTCTATGGTCACCCT 59.156 38.462 0.00 0.00 39.49 4.34
2553 2557 7.347222 TCATAACATAACTCTATGGTCACCCTT 59.653 37.037 0.00 0.00 39.49 3.95
2554 2558 6.388619 AACATAACTCTATGGTCACCCTTT 57.611 37.500 0.00 0.00 39.49 3.11
2555 2559 6.388619 ACATAACTCTATGGTCACCCTTTT 57.611 37.500 0.00 0.00 39.49 2.27
2556 2560 6.180472 ACATAACTCTATGGTCACCCTTTTG 58.820 40.000 0.00 0.00 39.49 2.44
2557 2561 4.993705 AACTCTATGGTCACCCTTTTGA 57.006 40.909 0.00 0.00 0.00 2.69
2558 2562 4.993705 ACTCTATGGTCACCCTTTTGAA 57.006 40.909 0.00 0.00 0.00 2.69
2559 2563 5.319043 ACTCTATGGTCACCCTTTTGAAA 57.681 39.130 0.00 0.00 0.00 2.69
2560 2564 5.316987 ACTCTATGGTCACCCTTTTGAAAG 58.683 41.667 0.00 0.00 35.79 2.62
2561 2565 4.079253 TCTATGGTCACCCTTTTGAAAGC 58.921 43.478 0.00 0.00 34.69 3.51
2562 2566 1.028905 TGGTCACCCTTTTGAAAGCG 58.971 50.000 0.00 0.00 34.69 4.68
2563 2567 1.314730 GGTCACCCTTTTGAAAGCGA 58.685 50.000 0.00 0.00 34.69 4.93
2564 2568 1.266989 GGTCACCCTTTTGAAAGCGAG 59.733 52.381 0.00 0.00 34.69 5.03
2565 2569 2.218603 GTCACCCTTTTGAAAGCGAGA 58.781 47.619 0.00 0.00 34.69 4.04
2566 2570 2.814336 GTCACCCTTTTGAAAGCGAGAT 59.186 45.455 0.00 0.00 34.69 2.75
2567 2571 4.000988 GTCACCCTTTTGAAAGCGAGATA 58.999 43.478 0.00 0.00 34.69 1.98
2568 2572 4.636206 GTCACCCTTTTGAAAGCGAGATAT 59.364 41.667 0.00 0.00 34.69 1.63
2569 2573 4.635765 TCACCCTTTTGAAAGCGAGATATG 59.364 41.667 0.00 0.00 34.69 1.78
2570 2574 4.635765 CACCCTTTTGAAAGCGAGATATGA 59.364 41.667 0.00 0.00 34.69 2.15
2571 2575 5.297776 CACCCTTTTGAAAGCGAGATATGAT 59.702 40.000 0.00 0.00 34.69 2.45
2572 2576 5.529060 ACCCTTTTGAAAGCGAGATATGATC 59.471 40.000 0.00 0.00 34.69 2.92
2573 2577 5.528690 CCCTTTTGAAAGCGAGATATGATCA 59.471 40.000 0.00 0.00 34.69 2.92
2574 2578 6.206243 CCCTTTTGAAAGCGAGATATGATCAT 59.794 38.462 13.81 13.81 34.69 2.45
2575 2579 7.388776 CCCTTTTGAAAGCGAGATATGATCATA 59.611 37.037 17.56 17.56 34.69 2.15
2576 2580 8.944029 CCTTTTGAAAGCGAGATATGATCATAT 58.056 33.333 25.04 25.04 34.52 1.78
2577 2581 9.970243 CTTTTGAAAGCGAGATATGATCATATC 57.030 33.333 34.31 34.31 46.23 1.63
2594 2598 9.910267 TGATCATATCTTCCTTTTCTTTCATGA 57.090 29.630 0.00 0.00 0.00 3.07
2599 2603 7.642082 ATCTTCCTTTTCTTTCATGAGATGG 57.358 36.000 0.00 0.00 0.00 3.51
2600 2604 6.782986 TCTTCCTTTTCTTTCATGAGATGGA 58.217 36.000 0.00 0.00 0.00 3.41
2601 2605 6.656693 TCTTCCTTTTCTTTCATGAGATGGAC 59.343 38.462 0.00 0.00 0.00 4.02
2602 2606 4.937620 TCCTTTTCTTTCATGAGATGGACG 59.062 41.667 0.00 0.00 0.00 4.79
2603 2607 4.937620 CCTTTTCTTTCATGAGATGGACGA 59.062 41.667 0.00 0.00 0.00 4.20
2604 2608 5.163814 CCTTTTCTTTCATGAGATGGACGAC 60.164 44.000 0.00 0.00 0.00 4.34
2605 2609 3.150848 TCTTTCATGAGATGGACGACG 57.849 47.619 0.00 0.00 0.00 5.12
2606 2610 2.159240 TCTTTCATGAGATGGACGACGG 60.159 50.000 0.00 0.00 0.00 4.79
2607 2611 0.179111 TTCATGAGATGGACGACGGC 60.179 55.000 0.00 0.00 0.00 5.68
2608 2612 1.946156 CATGAGATGGACGACGGCG 60.946 63.158 10.39 10.39 44.79 6.46
2609 2613 3.774959 ATGAGATGGACGACGGCGC 62.775 63.158 12.58 2.79 42.48 6.53
2625 2629 3.372730 GCCCGGATGCAAGCACAA 61.373 61.111 0.73 0.00 0.00 3.33
2626 2630 2.568090 CCCGGATGCAAGCACAAC 59.432 61.111 0.73 0.00 0.00 3.32
2627 2631 2.267351 CCCGGATGCAAGCACAACA 61.267 57.895 0.73 0.00 0.00 3.33
2628 2632 1.659233 CCGGATGCAAGCACAACAA 59.341 52.632 0.00 0.00 0.00 2.83
2629 2633 0.031857 CCGGATGCAAGCACAACAAA 59.968 50.000 0.00 0.00 0.00 2.83
2630 2634 1.537776 CCGGATGCAAGCACAACAAAA 60.538 47.619 0.00 0.00 0.00 2.44
2631 2635 2.200067 CGGATGCAAGCACAACAAAAA 58.800 42.857 0.00 0.00 0.00 1.94
2632 2636 2.219216 CGGATGCAAGCACAACAAAAAG 59.781 45.455 0.00 0.00 0.00 2.27
2633 2637 2.545106 GGATGCAAGCACAACAAAAAGG 59.455 45.455 0.00 0.00 0.00 3.11
2634 2638 1.367659 TGCAAGCACAACAAAAAGGC 58.632 45.000 0.00 0.00 0.00 4.35
2635 2639 1.338484 TGCAAGCACAACAAAAAGGCA 60.338 42.857 0.00 0.00 0.00 4.75
2636 2640 1.736681 GCAAGCACAACAAAAAGGCAA 59.263 42.857 0.00 0.00 0.00 4.52
2637 2641 2.355444 GCAAGCACAACAAAAAGGCAAT 59.645 40.909 0.00 0.00 0.00 3.56
2638 2642 3.789459 GCAAGCACAACAAAAAGGCAATG 60.789 43.478 0.00 0.00 0.00 2.82
2639 2643 1.941975 AGCACAACAAAAAGGCAATGC 59.058 42.857 0.00 0.00 0.00 3.56
2654 2658 5.917541 GGCAATGCCTCATTTTTATGATG 57.082 39.130 18.47 0.00 46.69 3.07
2655 2659 4.212636 GGCAATGCCTCATTTTTATGATGC 59.787 41.667 18.47 8.01 46.69 3.91
2656 2660 4.084745 GCAATGCCTCATTTTTATGATGCG 60.085 41.667 0.00 0.00 42.54 4.73
2657 2661 3.713858 TGCCTCATTTTTATGATGCGG 57.286 42.857 9.67 0.00 42.54 5.69
2658 2662 2.397549 GCCTCATTTTTATGATGCGGC 58.602 47.619 2.77 2.77 44.98 6.53
2659 2663 3.713858 CCTCATTTTTATGATGCGGCA 57.286 42.857 4.58 4.58 0.00 5.69
2660 2664 3.635331 CCTCATTTTTATGATGCGGCAG 58.365 45.455 9.25 0.00 0.00 4.85
2661 2665 3.067180 CCTCATTTTTATGATGCGGCAGT 59.933 43.478 9.25 0.00 0.00 4.40
2662 2666 4.440525 CCTCATTTTTATGATGCGGCAGTT 60.441 41.667 9.25 0.00 0.00 3.16
2663 2667 4.422840 TCATTTTTATGATGCGGCAGTTG 58.577 39.130 9.25 0.00 0.00 3.16
2664 2668 2.937469 TTTTATGATGCGGCAGTTGG 57.063 45.000 9.25 0.00 0.00 3.77
2665 2669 2.121291 TTTATGATGCGGCAGTTGGA 57.879 45.000 9.25 0.00 0.00 3.53
2666 2670 2.121291 TTATGATGCGGCAGTTGGAA 57.879 45.000 9.25 0.00 0.00 3.53
2667 2671 2.346766 TATGATGCGGCAGTTGGAAT 57.653 45.000 9.25 0.00 0.00 3.01
2668 2672 0.742505 ATGATGCGGCAGTTGGAATG 59.257 50.000 9.25 0.00 0.00 2.67
2669 2673 1.314534 TGATGCGGCAGTTGGAATGG 61.315 55.000 9.25 0.00 0.00 3.16
2670 2674 2.618312 GATGCGGCAGTTGGAATGGC 62.618 60.000 9.25 0.00 39.69 4.40
2671 2675 3.372730 GCGGCAGTTGGAATGGCA 61.373 61.111 0.00 0.00 43.01 4.92
2672 2676 2.568090 CGGCAGTTGGAATGGCAC 59.432 61.111 0.00 0.00 43.01 5.01
2688 2692 3.734463 TGGCACACATCGTTCTTTTAGA 58.266 40.909 0.00 0.00 0.00 2.10
2689 2693 3.496884 TGGCACACATCGTTCTTTTAGAC 59.503 43.478 0.00 0.00 0.00 2.59
2690 2694 3.496884 GGCACACATCGTTCTTTTAGACA 59.503 43.478 0.00 0.00 0.00 3.41
2691 2695 4.024387 GGCACACATCGTTCTTTTAGACAA 60.024 41.667 0.00 0.00 0.00 3.18
2692 2696 5.334879 GGCACACATCGTTCTTTTAGACAAT 60.335 40.000 0.00 0.00 0.00 2.71
2693 2697 5.790495 GCACACATCGTTCTTTTAGACAATC 59.210 40.000 0.00 0.00 0.00 2.67
2694 2698 6.347725 GCACACATCGTTCTTTTAGACAATCT 60.348 38.462 0.00 0.00 0.00 2.40
2695 2699 7.230222 CACACATCGTTCTTTTAGACAATCTC 58.770 38.462 0.00 0.00 0.00 2.75
2696 2700 7.116948 CACACATCGTTCTTTTAGACAATCTCT 59.883 37.037 0.00 0.00 0.00 3.10
2697 2701 7.329717 ACACATCGTTCTTTTAGACAATCTCTC 59.670 37.037 0.00 0.00 0.00 3.20
2698 2702 7.329471 CACATCGTTCTTTTAGACAATCTCTCA 59.671 37.037 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.437651 CTGGTCACCCCACCAAAAATTT 59.562 45.455 0.00 0.00 46.19 1.82
179 180 2.224426 ACCTTTGCACATAACGAGTCCA 60.224 45.455 0.00 0.00 0.00 4.02
292 293 1.688197 CCCCTTTTTCAGCAGCTCAAA 59.312 47.619 0.00 0.00 0.00 2.69
325 326 1.080298 ATATTTGCACCGTCGCGAAA 58.920 45.000 12.06 0.00 38.74 3.46
469 470 7.388776 TGGAAAGAATAGATGCCGAATAAGATG 59.611 37.037 0.00 0.00 0.00 2.90
696 697 0.178891 TCTGAGGGACCTGAGCCTTT 60.179 55.000 0.00 0.00 0.00 3.11
731 732 2.813474 GTGTCGCAGCACGCCATA 60.813 61.111 0.00 0.00 43.23 2.74
908 909 7.326063 CCGTAAAATTGAAAACCACTTCATCTC 59.674 37.037 0.00 0.00 35.31 2.75
940 941 8.877864 TGATCCAATAAGACAAGTAACCAATT 57.122 30.769 0.00 0.00 0.00 2.32
1224 1225 9.270640 GCATCAACATTAGTCTTAATGATCTCT 57.729 33.333 12.74 0.00 45.92 3.10
1238 1239 7.087409 TCCACATAACTTGCATCAACATTAG 57.913 36.000 0.00 0.00 0.00 1.73
1309 1310 5.478679 CCCAGGACGATATGATAACTTCTCT 59.521 44.000 0.00 0.00 0.00 3.10
1355 1356 1.374758 AGTTCAGCTTCTTCCGCGG 60.375 57.895 22.12 22.12 0.00 6.46
1368 1369 0.318441 CAAGGGTCGCTCTCAGTTCA 59.682 55.000 0.00 0.00 0.00 3.18
1433 1434 5.508200 AGCCACAAAAGAACAATTCGTTA 57.492 34.783 0.00 0.00 38.19 3.18
1495 1496 8.713036 ACTCAAAGCTTCTATCTTTAGATCCAT 58.287 33.333 0.00 0.00 34.44 3.41
1562 1563 1.583054 CACCCTATTAGCCGTTCTGC 58.417 55.000 0.00 0.00 0.00 4.26
1730 1731 9.123902 TCAGTTTTCAGATACATATTCATTGGG 57.876 33.333 0.00 0.00 0.00 4.12
1807 1808 6.558771 TTCATGTTGAAGTCGATGTGATTT 57.441 33.333 0.00 0.00 31.83 2.17
2182 2186 3.923864 ACGCCGTCACCAGCTTCA 61.924 61.111 0.00 0.00 0.00 3.02
2219 2223 0.544595 AACTCCTACGCCAGAGGGTT 60.545 55.000 1.84 0.00 40.19 4.11
2338 2342 9.217278 CCAATGTCAAAAATCATGTCCAAAATA 57.783 29.630 0.00 0.00 0.00 1.40
2339 2343 7.175293 CCCAATGTCAAAAATCATGTCCAAAAT 59.825 33.333 0.00 0.00 0.00 1.82
2341 2345 5.996513 CCCAATGTCAAAAATCATGTCCAAA 59.003 36.000 0.00 0.00 0.00 3.28
2342 2346 5.071519 ACCCAATGTCAAAAATCATGTCCAA 59.928 36.000 0.00 0.00 0.00 3.53
2343 2347 4.592351 ACCCAATGTCAAAAATCATGTCCA 59.408 37.500 0.00 0.00 0.00 4.02
2344 2348 5.151297 ACCCAATGTCAAAAATCATGTCC 57.849 39.130 0.00 0.00 0.00 4.02
2345 2349 6.256321 GCATACCCAATGTCAAAAATCATGTC 59.744 38.462 0.00 0.00 37.93 3.06
2346 2350 6.108015 GCATACCCAATGTCAAAAATCATGT 58.892 36.000 0.00 0.00 37.93 3.21
2347 2351 5.232626 CGCATACCCAATGTCAAAAATCATG 59.767 40.000 0.00 0.00 37.93 3.07
2348 2352 5.350633 CGCATACCCAATGTCAAAAATCAT 58.649 37.500 0.00 0.00 37.93 2.45
2349 2353 4.381398 CCGCATACCCAATGTCAAAAATCA 60.381 41.667 0.00 0.00 37.93 2.57
2350 2354 4.111916 CCGCATACCCAATGTCAAAAATC 58.888 43.478 0.00 0.00 37.93 2.17
2351 2355 3.766591 TCCGCATACCCAATGTCAAAAAT 59.233 39.130 0.00 0.00 37.93 1.82
2352 2356 3.157881 TCCGCATACCCAATGTCAAAAA 58.842 40.909 0.00 0.00 37.93 1.94
2353 2357 2.752354 CTCCGCATACCCAATGTCAAAA 59.248 45.455 0.00 0.00 37.93 2.44
2354 2358 2.290641 ACTCCGCATACCCAATGTCAAA 60.291 45.455 0.00 0.00 37.93 2.69
2355 2359 1.280710 ACTCCGCATACCCAATGTCAA 59.719 47.619 0.00 0.00 37.93 3.18
2356 2360 0.908910 ACTCCGCATACCCAATGTCA 59.091 50.000 0.00 0.00 37.93 3.58
2357 2361 1.134521 TGACTCCGCATACCCAATGTC 60.135 52.381 0.00 0.00 37.93 3.06
2358 2362 0.908910 TGACTCCGCATACCCAATGT 59.091 50.000 0.00 0.00 37.93 2.71
2359 2363 2.036958 TTGACTCCGCATACCCAATG 57.963 50.000 0.00 0.00 38.74 2.82
2360 2364 2.799126 TTTGACTCCGCATACCCAAT 57.201 45.000 0.00 0.00 0.00 3.16
2361 2365 2.570415 TTTTGACTCCGCATACCCAA 57.430 45.000 0.00 0.00 0.00 4.12
2362 2366 2.570415 TTTTTGACTCCGCATACCCA 57.430 45.000 0.00 0.00 0.00 4.51
2379 2383 9.950680 CTCTGTGTGTGTGATAAAAATAGTTTT 57.049 29.630 6.13 6.13 40.15 2.43
2380 2384 9.120538 ACTCTGTGTGTGTGATAAAAATAGTTT 57.879 29.630 0.00 0.00 0.00 2.66
2381 2385 8.677148 ACTCTGTGTGTGTGATAAAAATAGTT 57.323 30.769 0.00 0.00 0.00 2.24
2382 2386 8.677148 AACTCTGTGTGTGTGATAAAAATAGT 57.323 30.769 0.00 0.00 0.00 2.12
2414 2418 5.912396 GTCTTACATCATCGTGCAACAAAAA 59.088 36.000 0.00 0.00 35.74 1.94
2415 2419 5.448438 GTCTTACATCATCGTGCAACAAAA 58.552 37.500 0.00 0.00 35.74 2.44
2416 2420 4.083537 GGTCTTACATCATCGTGCAACAAA 60.084 41.667 0.00 0.00 35.74 2.83
2417 2421 3.435327 GGTCTTACATCATCGTGCAACAA 59.565 43.478 0.00 0.00 35.74 2.83
2418 2422 3.000041 GGTCTTACATCATCGTGCAACA 59.000 45.455 0.00 0.00 35.74 3.33
2419 2423 3.262420 AGGTCTTACATCATCGTGCAAC 58.738 45.455 0.00 0.00 0.00 4.17
2420 2424 3.610040 AGGTCTTACATCATCGTGCAA 57.390 42.857 0.00 0.00 0.00 4.08
2421 2425 4.729227 TTAGGTCTTACATCATCGTGCA 57.271 40.909 0.00 0.00 0.00 4.57
2422 2426 6.417191 TTTTTAGGTCTTACATCATCGTGC 57.583 37.500 0.00 0.00 0.00 5.34
2460 2464 9.216117 ACAAAGAACAGCTTATAGTTTAATCGT 57.784 29.630 0.00 0.00 35.24 3.73
2467 2471 9.593134 CATCTCTACAAAGAACAGCTTATAGTT 57.407 33.333 0.00 0.00 35.24 2.24
2468 2472 8.200792 CCATCTCTACAAAGAACAGCTTATAGT 58.799 37.037 0.00 0.00 35.24 2.12
2469 2473 8.200792 ACCATCTCTACAAAGAACAGCTTATAG 58.799 37.037 0.00 0.00 35.24 1.31
2470 2474 7.981789 CACCATCTCTACAAAGAACAGCTTATA 59.018 37.037 0.00 0.00 35.24 0.98
2471 2475 6.820656 CACCATCTCTACAAAGAACAGCTTAT 59.179 38.462 0.00 0.00 35.24 1.73
2472 2476 6.166279 CACCATCTCTACAAAGAACAGCTTA 58.834 40.000 0.00 0.00 35.24 3.09
2473 2477 4.999950 CACCATCTCTACAAAGAACAGCTT 59.000 41.667 0.00 0.00 38.88 3.74
2474 2478 4.040952 ACACCATCTCTACAAAGAACAGCT 59.959 41.667 0.00 0.00 0.00 4.24
2475 2479 4.319177 ACACCATCTCTACAAAGAACAGC 58.681 43.478 0.00 0.00 0.00 4.40
2476 2480 6.867662 AAACACCATCTCTACAAAGAACAG 57.132 37.500 0.00 0.00 0.00 3.16
2477 2481 6.826231 TGAAAACACCATCTCTACAAAGAACA 59.174 34.615 0.00 0.00 0.00 3.18
2478 2482 7.259290 TGAAAACACCATCTCTACAAAGAAC 57.741 36.000 0.00 0.00 0.00 3.01
2479 2483 7.873719 TTGAAAACACCATCTCTACAAAGAA 57.126 32.000 0.00 0.00 0.00 2.52
2480 2484 9.567776 TTATTGAAAACACCATCTCTACAAAGA 57.432 29.630 0.00 0.00 0.00 2.52
2485 2489 9.573133 CCAAATTATTGAAAACACCATCTCTAC 57.427 33.333 0.00 0.00 38.94 2.59
2486 2490 9.308000 ACCAAATTATTGAAAACACCATCTCTA 57.692 29.630 0.00 0.00 38.94 2.43
2487 2491 8.193953 ACCAAATTATTGAAAACACCATCTCT 57.806 30.769 0.00 0.00 38.94 3.10
2488 2492 8.831715 AACCAAATTATTGAAAACACCATCTC 57.168 30.769 0.00 0.00 38.94 2.75
2489 2493 9.705290 GTAACCAAATTATTGAAAACACCATCT 57.295 29.630 0.00 0.00 38.94 2.90
2490 2494 9.482627 TGTAACCAAATTATTGAAAACACCATC 57.517 29.630 0.00 0.00 38.94 3.51
2492 2496 9.838339 AATGTAACCAAATTATTGAAAACACCA 57.162 25.926 0.00 0.00 38.94 4.17
2494 2498 9.592720 GCAATGTAACCAAATTATTGAAAACAC 57.407 29.630 0.00 0.00 38.94 3.32
2495 2499 9.330063 TGCAATGTAACCAAATTATTGAAAACA 57.670 25.926 0.00 0.00 38.94 2.83
2498 2502 9.770097 TCTTGCAATGTAACCAAATTATTGAAA 57.230 25.926 0.00 0.00 38.94 2.69
2499 2503 9.770097 TTCTTGCAATGTAACCAAATTATTGAA 57.230 25.926 0.00 0.00 38.94 2.69
2500 2504 9.770097 TTTCTTGCAATGTAACCAAATTATTGA 57.230 25.926 0.00 0.00 38.94 2.57
2503 2507 9.941325 TGATTTCTTGCAATGTAACCAAATTAT 57.059 25.926 0.00 0.00 0.00 1.28
2504 2508 9.941325 ATGATTTCTTGCAATGTAACCAAATTA 57.059 25.926 0.00 0.00 0.00 1.40
2505 2509 8.851541 ATGATTTCTTGCAATGTAACCAAATT 57.148 26.923 0.00 0.00 0.00 1.82
2506 2510 9.941325 TTATGATTTCTTGCAATGTAACCAAAT 57.059 25.926 0.00 0.00 0.00 2.32
2507 2511 9.202273 GTTATGATTTCTTGCAATGTAACCAAA 57.798 29.630 0.00 0.00 0.00 3.28
2508 2512 8.363390 TGTTATGATTTCTTGCAATGTAACCAA 58.637 29.630 0.00 0.00 0.00 3.67
2509 2513 7.890515 TGTTATGATTTCTTGCAATGTAACCA 58.109 30.769 0.00 0.00 0.00 3.67
2510 2514 8.931385 ATGTTATGATTTCTTGCAATGTAACC 57.069 30.769 0.00 0.00 0.00 2.85
2514 2518 9.793252 GAGTTATGTTATGATTTCTTGCAATGT 57.207 29.630 0.00 0.00 0.00 2.71
2524 2528 9.561069 GGTGACCATAGAGTTATGTTATGATTT 57.439 33.333 0.00 0.00 35.84 2.17
2545 2549 2.218603 TCTCGCTTTCAAAAGGGTGAC 58.781 47.619 16.24 0.00 45.80 3.67
2546 2550 2.631160 TCTCGCTTTCAAAAGGGTGA 57.369 45.000 16.24 16.03 45.80 4.02
2547 2551 4.635765 TCATATCTCGCTTTCAAAAGGGTG 59.364 41.667 16.24 14.39 45.80 4.61
2548 2552 4.843728 TCATATCTCGCTTTCAAAAGGGT 58.156 39.130 16.24 3.77 45.80 4.34
2549 2553 5.528690 TGATCATATCTCGCTTTCAAAAGGG 59.471 40.000 12.02 12.02 46.67 3.95
2550 2554 6.609237 TGATCATATCTCGCTTTCAAAAGG 57.391 37.500 4.76 0.00 36.53 3.11
2551 2555 9.970243 GATATGATCATATCTCGCTTTCAAAAG 57.030 33.333 34.10 0.00 43.84 2.27
2568 2572 9.910267 TCATGAAAGAAAAGGAAGATATGATCA 57.090 29.630 0.00 0.00 0.00 2.92
2573 2577 9.352191 CCATCTCATGAAAGAAAAGGAAGATAT 57.648 33.333 0.00 0.00 0.00 1.63
2574 2578 8.551440 TCCATCTCATGAAAGAAAAGGAAGATA 58.449 33.333 0.00 0.00 0.00 1.98
2575 2579 7.338957 GTCCATCTCATGAAAGAAAAGGAAGAT 59.661 37.037 0.00 0.00 31.08 2.40
2576 2580 6.656693 GTCCATCTCATGAAAGAAAAGGAAGA 59.343 38.462 0.00 0.00 31.08 2.87
2577 2581 6.402983 CGTCCATCTCATGAAAGAAAAGGAAG 60.403 42.308 0.00 1.00 31.08 3.46
2578 2582 5.412594 CGTCCATCTCATGAAAGAAAAGGAA 59.587 40.000 0.00 0.00 31.08 3.36
2579 2583 4.937620 CGTCCATCTCATGAAAGAAAAGGA 59.062 41.667 0.00 0.00 0.00 3.36
2580 2584 4.937620 TCGTCCATCTCATGAAAGAAAAGG 59.062 41.667 0.00 0.00 0.00 3.11
2581 2585 5.445142 CGTCGTCCATCTCATGAAAGAAAAG 60.445 44.000 0.00 0.00 0.00 2.27
2582 2586 4.388773 CGTCGTCCATCTCATGAAAGAAAA 59.611 41.667 0.00 0.00 0.00 2.29
2583 2587 3.926527 CGTCGTCCATCTCATGAAAGAAA 59.073 43.478 0.00 0.00 0.00 2.52
2584 2588 3.511699 CGTCGTCCATCTCATGAAAGAA 58.488 45.455 0.00 0.00 0.00 2.52
2585 2589 2.159240 CCGTCGTCCATCTCATGAAAGA 60.159 50.000 0.00 0.00 0.00 2.52
2586 2590 2.196749 CCGTCGTCCATCTCATGAAAG 58.803 52.381 0.00 0.00 0.00 2.62
2587 2591 1.739035 GCCGTCGTCCATCTCATGAAA 60.739 52.381 0.00 0.00 0.00 2.69
2588 2592 0.179111 GCCGTCGTCCATCTCATGAA 60.179 55.000 0.00 0.00 0.00 2.57
2589 2593 1.437573 GCCGTCGTCCATCTCATGA 59.562 57.895 0.00 0.00 0.00 3.07
2590 2594 1.946156 CGCCGTCGTCCATCTCATG 60.946 63.158 0.00 0.00 0.00 3.07
2591 2595 2.413351 CGCCGTCGTCCATCTCAT 59.587 61.111 0.00 0.00 0.00 2.90
2592 2596 4.492160 GCGCCGTCGTCCATCTCA 62.492 66.667 0.00 0.00 38.14 3.27
2608 2612 3.372730 TTGTGCTTGCATCCGGGC 61.373 61.111 0.00 0.00 0.00 6.13
2609 2613 1.804396 TTGTTGTGCTTGCATCCGGG 61.804 55.000 0.00 0.00 0.00 5.73
2610 2614 0.031857 TTTGTTGTGCTTGCATCCGG 59.968 50.000 0.00 0.00 0.00 5.14
2611 2615 1.850377 TTTTGTTGTGCTTGCATCCG 58.150 45.000 0.00 0.00 0.00 4.18
2612 2616 2.545106 CCTTTTTGTTGTGCTTGCATCC 59.455 45.455 0.00 0.00 0.00 3.51
2613 2617 2.032636 GCCTTTTTGTTGTGCTTGCATC 60.033 45.455 0.00 0.00 0.00 3.91
2614 2618 1.941975 GCCTTTTTGTTGTGCTTGCAT 59.058 42.857 0.00 0.00 0.00 3.96
2615 2619 1.338484 TGCCTTTTTGTTGTGCTTGCA 60.338 42.857 0.00 0.00 0.00 4.08
2616 2620 1.367659 TGCCTTTTTGTTGTGCTTGC 58.632 45.000 0.00 0.00 0.00 4.01
2617 2621 3.789459 GCATTGCCTTTTTGTTGTGCTTG 60.789 43.478 0.00 0.00 0.00 4.01
2618 2622 2.355444 GCATTGCCTTTTTGTTGTGCTT 59.645 40.909 0.00 0.00 0.00 3.91
2619 2623 1.941975 GCATTGCCTTTTTGTTGTGCT 59.058 42.857 0.00 0.00 0.00 4.40
2620 2624 1.002576 GGCATTGCCTTTTTGTTGTGC 60.003 47.619 20.66 0.00 46.69 4.57
2639 2643 3.067180 ACTGCCGCATCATAAAAATGAGG 59.933 43.478 0.00 2.01 44.25 3.86
2640 2644 4.297299 ACTGCCGCATCATAAAAATGAG 57.703 40.909 0.00 0.00 33.59 2.90
2641 2645 4.422840 CAACTGCCGCATCATAAAAATGA 58.577 39.130 0.00 0.00 34.73 2.57
2642 2646 3.552699 CCAACTGCCGCATCATAAAAATG 59.447 43.478 0.00 0.00 0.00 2.32
2643 2647 3.446873 TCCAACTGCCGCATCATAAAAAT 59.553 39.130 0.00 0.00 0.00 1.82
2644 2648 2.822561 TCCAACTGCCGCATCATAAAAA 59.177 40.909 0.00 0.00 0.00 1.94
2645 2649 2.441410 TCCAACTGCCGCATCATAAAA 58.559 42.857 0.00 0.00 0.00 1.52
2646 2650 2.121291 TCCAACTGCCGCATCATAAA 57.879 45.000 0.00 0.00 0.00 1.40
2647 2651 2.121291 TTCCAACTGCCGCATCATAA 57.879 45.000 0.00 0.00 0.00 1.90
2648 2652 1.948834 CATTCCAACTGCCGCATCATA 59.051 47.619 0.00 0.00 0.00 2.15
2649 2653 0.742505 CATTCCAACTGCCGCATCAT 59.257 50.000 0.00 0.00 0.00 2.45
2650 2654 1.314534 CCATTCCAACTGCCGCATCA 61.315 55.000 0.00 0.00 0.00 3.07
2651 2655 1.434696 CCATTCCAACTGCCGCATC 59.565 57.895 0.00 0.00 0.00 3.91
2652 2656 2.713967 GCCATTCCAACTGCCGCAT 61.714 57.895 0.00 0.00 0.00 4.73
2653 2657 3.372730 GCCATTCCAACTGCCGCA 61.373 61.111 0.00 0.00 0.00 5.69
2654 2658 3.372730 TGCCATTCCAACTGCCGC 61.373 61.111 0.00 0.00 0.00 6.53
2655 2659 2.267351 TGTGCCATTCCAACTGCCG 61.267 57.895 0.00 0.00 0.00 5.69
2656 2660 1.290009 GTGTGCCATTCCAACTGCC 59.710 57.895 0.00 0.00 0.00 4.85
2657 2661 0.604578 ATGTGTGCCATTCCAACTGC 59.395 50.000 0.00 0.00 0.00 4.40
2658 2662 1.135603 CGATGTGTGCCATTCCAACTG 60.136 52.381 0.00 0.00 32.56 3.16
2659 2663 1.167851 CGATGTGTGCCATTCCAACT 58.832 50.000 0.00 0.00 32.56 3.16
2660 2664 0.881118 ACGATGTGTGCCATTCCAAC 59.119 50.000 0.00 0.00 32.56 3.77
2661 2665 1.539388 GAACGATGTGTGCCATTCCAA 59.461 47.619 0.00 0.00 32.56 3.53
2662 2666 1.164411 GAACGATGTGTGCCATTCCA 58.836 50.000 0.00 0.00 32.56 3.53
2663 2667 1.453155 AGAACGATGTGTGCCATTCC 58.547 50.000 0.00 0.00 32.56 3.01
2664 2668 3.559238 AAAGAACGATGTGTGCCATTC 57.441 42.857 0.00 0.00 32.56 2.67
2665 2669 4.759693 TCTAAAAGAACGATGTGTGCCATT 59.240 37.500 0.00 0.00 32.56 3.16
2666 2670 4.154195 GTCTAAAAGAACGATGTGTGCCAT 59.846 41.667 0.00 0.00 36.13 4.40
2667 2671 3.496884 GTCTAAAAGAACGATGTGTGCCA 59.503 43.478 0.00 0.00 0.00 4.92
2668 2672 3.496884 TGTCTAAAAGAACGATGTGTGCC 59.503 43.478 0.00 0.00 0.00 5.01
2669 2673 4.725556 TGTCTAAAAGAACGATGTGTGC 57.274 40.909 0.00 0.00 0.00 4.57
2670 2674 7.116948 AGAGATTGTCTAAAAGAACGATGTGTG 59.883 37.037 0.00 0.00 31.71 3.82
2671 2675 7.155328 AGAGATTGTCTAAAAGAACGATGTGT 58.845 34.615 0.00 0.00 31.71 3.72
2672 2676 7.329471 TGAGAGATTGTCTAAAAGAACGATGTG 59.671 37.037 0.00 0.00 34.71 3.21
2673 2677 7.378966 TGAGAGATTGTCTAAAAGAACGATGT 58.621 34.615 0.00 0.00 34.71 3.06
2674 2678 7.818493 TGAGAGATTGTCTAAAAGAACGATG 57.182 36.000 0.00 0.00 34.71 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.