Multiple sequence alignment - TraesCS2B01G426800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G426800 chr2B 100.000 4244 0 0 1 4244 614233436 614237679 0.000000e+00 7838.0
1 TraesCS2B01G426800 chr2B 90.489 2555 207 23 732 3257 613232385 613234932 0.000000e+00 3339.0
2 TraesCS2B01G426800 chr2B 88.287 2066 189 26 730 2772 613901678 613903713 0.000000e+00 2425.0
3 TraesCS2B01G426800 chr2B 85.693 1321 147 20 1952 3257 613212353 613213646 0.000000e+00 1354.0
4 TraesCS2B01G426800 chr2B 89.447 995 90 10 963 1957 613205441 613206420 0.000000e+00 1242.0
5 TraesCS2B01G426800 chr2B 95.028 543 26 1 3 545 57119201 57119742 0.000000e+00 852.0
6 TraesCS2B01G426800 chr2B 88.998 409 45 0 137 545 91000220 90999812 1.360000e-139 507.0
7 TraesCS2B01G426800 chr2B 86.901 313 37 2 3936 4244 614236209 614236521 8.730000e-92 348.0
8 TraesCS2B01G426800 chr2B 84.665 313 44 1 3936 4244 613234447 613234759 4.120000e-80 309.0
9 TraesCS2B01G426800 chr2B 86.982 169 16 4 540 708 613256972 613257134 7.250000e-43 185.0
10 TraesCS2B01G426800 chr2B 86.628 172 16 5 538 707 613219396 613219562 2.610000e-42 183.0
11 TraesCS2B01G426800 chr2B 84.615 169 26 0 3616 3784 799798785 799798953 7.300000e-38 169.0
12 TraesCS2B01G426800 chr2D 96.890 2572 76 2 692 3260 521581057 521578487 0.000000e+00 4303.0
13 TraesCS2B01G426800 chr2D 90.428 2549 200 29 730 3269 521763573 521761060 0.000000e+00 3315.0
14 TraesCS2B01G426800 chr2D 88.208 2544 254 25 731 3257 521588388 521585874 0.000000e+00 2994.0
15 TraesCS2B01G426800 chr2D 85.612 1529 162 27 963 2462 521873327 521871828 0.000000e+00 1552.0
16 TraesCS2B01G426800 chr2D 91.611 894 69 2 3355 4244 521578124 521577233 0.000000e+00 1230.0
17 TraesCS2B01G426800 chr2D 85.772 984 124 13 2293 3269 521784547 521783573 0.000000e+00 1027.0
18 TraesCS2B01G426800 chr2D 83.709 976 130 6 1333 2296 521790837 521789879 0.000000e+00 894.0
19 TraesCS2B01G426800 chr2D 86.881 808 95 8 2453 3257 521869084 521868285 0.000000e+00 894.0
20 TraesCS2B01G426800 chr2D 88.629 598 57 8 2663 3257 521865910 521865321 0.000000e+00 717.0
21 TraesCS2B01G426800 chr2D 89.834 541 53 1 3 543 633506590 633506052 0.000000e+00 693.0
22 TraesCS2B01G426800 chr2D 86.262 313 39 1 3936 4244 521578973 521578661 1.890000e-88 337.0
23 TraesCS2B01G426800 chr2D 98.765 162 1 1 542 703 521582128 521581968 1.930000e-73 287.0
24 TraesCS2B01G426800 chr2D 83.279 305 46 2 3936 4236 521867281 521866978 4.180000e-70 276.0
25 TraesCS2B01G426800 chr2D 82.951 305 47 2 3936 4236 521865799 521865496 1.940000e-68 270.0
26 TraesCS2B01G426800 chr2D 82.951 305 47 2 3936 4236 521868763 521868460 1.940000e-68 270.0
27 TraesCS2B01G426800 chr2D 89.349 169 12 4 540 708 521759784 521759622 1.550000e-49 207.0
28 TraesCS2B01G426800 chr2A 93.638 2562 134 7 730 3288 665984742 665987277 0.000000e+00 3801.0
29 TraesCS2B01G426800 chr2A 91.371 2561 188 6 730 3288 665949845 665952374 0.000000e+00 3474.0
30 TraesCS2B01G426800 chr2A 90.976 543 49 0 3 545 693376110 693375568 0.000000e+00 732.0
31 TraesCS2B01G426800 chr2A 89.174 545 58 1 3 546 597862256 597862800 0.000000e+00 678.0
32 TraesCS2B01G426800 chr2A 86.004 543 76 0 3 545 207775161 207774619 2.200000e-162 582.0
33 TraesCS2B01G426800 chr2A 87.220 313 36 1 3936 4244 665951860 665952172 1.880000e-93 353.0
34 TraesCS2B01G426800 chr2A 85.623 313 41 1 3936 4244 665986761 665987073 4.090000e-85 326.0
35 TraesCS2B01G426800 chr6A 93.223 546 36 1 3 547 616904641 616904096 0.000000e+00 802.0
36 TraesCS2B01G426800 chr6B 86.220 537 73 1 11 546 177833947 177834483 7.910000e-162 580.0
37 TraesCS2B01G426800 chr1B 80.147 544 107 1 3 546 385030937 385030395 5.110000e-109 405.0
38 TraesCS2B01G426800 chr3B 85.657 251 36 0 3616 3866 575754483 575754233 9.050000e-67 265.0
39 TraesCS2B01G426800 chr4A 88.148 135 14 2 3631 3764 670461955 670462088 4.390000e-35 159.0
40 TraesCS2B01G426800 chr4B 100.000 38 0 0 3710 3747 649572619 649572656 2.120000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G426800 chr2B 614233436 614237679 4243 False 4093.000000 7838 93.4505 1 4244 2 chr2B.!!$F9 4243
1 TraesCS2B01G426800 chr2B 613901678 613903713 2035 False 2425.000000 2425 88.2870 730 2772 1 chr2B.!!$F6 2042
2 TraesCS2B01G426800 chr2B 613232385 613234932 2547 False 1824.000000 3339 87.5770 732 4244 2 chr2B.!!$F8 3512
3 TraesCS2B01G426800 chr2B 613212353 613213646 1293 False 1354.000000 1354 85.6930 1952 3257 1 chr2B.!!$F3 1305
4 TraesCS2B01G426800 chr2B 613205441 613206420 979 False 1242.000000 1242 89.4470 963 1957 1 chr2B.!!$F2 994
5 TraesCS2B01G426800 chr2B 57119201 57119742 541 False 852.000000 852 95.0280 3 545 1 chr2B.!!$F1 542
6 TraesCS2B01G426800 chr2D 521577233 521588388 11155 True 1830.200000 4303 92.3472 542 4244 5 chr2D.!!$R4 3702
7 TraesCS2B01G426800 chr2D 521759622 521763573 3951 True 1761.000000 3315 89.8885 540 3269 2 chr2D.!!$R5 2729
8 TraesCS2B01G426800 chr2D 521783573 521784547 974 True 1027.000000 1027 85.7720 2293 3269 1 chr2D.!!$R1 976
9 TraesCS2B01G426800 chr2D 521789879 521790837 958 True 894.000000 894 83.7090 1333 2296 1 chr2D.!!$R2 963
10 TraesCS2B01G426800 chr2D 633506052 633506590 538 True 693.000000 693 89.8340 3 543 1 chr2D.!!$R3 540
11 TraesCS2B01G426800 chr2D 521865321 521873327 8006 True 663.166667 1552 85.0505 963 4236 6 chr2D.!!$R6 3273
12 TraesCS2B01G426800 chr2A 665984742 665987277 2535 False 2063.500000 3801 89.6305 730 4244 2 chr2A.!!$F3 3514
13 TraesCS2B01G426800 chr2A 665949845 665952374 2529 False 1913.500000 3474 89.2955 730 4244 2 chr2A.!!$F2 3514
14 TraesCS2B01G426800 chr2A 693375568 693376110 542 True 732.000000 732 90.9760 3 545 1 chr2A.!!$R2 542
15 TraesCS2B01G426800 chr2A 597862256 597862800 544 False 678.000000 678 89.1740 3 546 1 chr2A.!!$F1 543
16 TraesCS2B01G426800 chr2A 207774619 207775161 542 True 582.000000 582 86.0040 3 545 1 chr2A.!!$R1 542
17 TraesCS2B01G426800 chr6A 616904096 616904641 545 True 802.000000 802 93.2230 3 547 1 chr6A.!!$R1 544
18 TraesCS2B01G426800 chr6B 177833947 177834483 536 False 580.000000 580 86.2200 11 546 1 chr6B.!!$F1 535
19 TraesCS2B01G426800 chr1B 385030395 385030937 542 True 405.000000 405 80.1470 3 546 1 chr1B.!!$R1 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
600 604 0.034186 CCACCTAAAGGGCAGATGCA 60.034 55.0 7.19 0.0 44.36 3.96 F
680 684 0.040351 ACCACTAGCAGCAGAGAGGA 59.960 55.0 15.10 0.0 0.00 3.71 F
1118 1177 0.040958 CACGTGCAAGCAGAGGAAAC 60.041 55.0 0.82 0.0 0.00 2.78 F
1530 8981 0.179073 ACAATAAGCTCATCGGCGCT 60.179 50.0 7.64 0.0 38.30 5.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2376 9851 0.325860 TACCCCTGAAGCCCATACGT 60.326 55.000 0.00 0.00 0.00 3.57 R
2577 12807 1.592669 CATGGACGTGCCGGAGATC 60.593 63.158 5.05 0.00 40.66 2.75 R
2793 13024 1.134580 TCGTAGACTAGTCCAGGGTCG 60.135 57.143 19.38 13.89 35.42 4.79 R
3480 16969 0.034059 CAACTCAGGTCAGGCTTCGT 59.966 55.000 0.00 0.00 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
139 140 1.491563 GAGCGTTCATTGCGACGTT 59.508 52.632 11.97 7.54 41.10 3.99
175 176 4.079090 CGTAGAGGACGCAGCAAG 57.921 61.111 0.00 0.00 46.27 4.01
250 251 2.365617 GCAATAAGGTGGAGATCCGAGA 59.634 50.000 0.00 0.00 39.43 4.04
392 395 3.935240 TGTCCTAGGGAGGCCAATATA 57.065 47.619 9.46 0.00 43.40 0.86
445 448 2.093973 CCTCGAGAACTATTGTGTGGCT 60.094 50.000 15.71 0.00 0.00 4.75
451 454 0.036388 ACTATTGTGTGGCTGACCGG 60.036 55.000 0.00 0.00 39.70 5.28
468 472 2.593956 GGGGCTCCGGACTTTCTGT 61.594 63.158 0.00 0.00 0.00 3.41
474 478 3.596214 GCTCCGGACTTTCTGTTTGATA 58.404 45.455 0.00 0.00 0.00 2.15
526 530 4.034742 ACATGAAATATAAACCGCCGTGAC 59.965 41.667 0.00 0.00 0.00 3.67
564 568 5.814764 AAAACACGTACATGGTTACAACA 57.185 34.783 0.00 0.00 0.00 3.33
565 569 4.799419 AACACGTACATGGTTACAACAC 57.201 40.909 0.00 0.00 0.00 3.32
566 570 3.132925 ACACGTACATGGTTACAACACC 58.867 45.455 0.00 0.00 37.34 4.16
575 579 4.052159 TGGTTACAACACCATGCAAAAG 57.948 40.909 0.00 0.00 42.27 2.27
576 580 3.181471 TGGTTACAACACCATGCAAAAGG 60.181 43.478 0.00 0.00 42.27 3.11
577 581 3.068873 GGTTACAACACCATGCAAAAGGA 59.931 43.478 9.85 0.00 36.73 3.36
578 582 2.888834 ACAACACCATGCAAAAGGAC 57.111 45.000 9.85 0.00 0.00 3.85
579 583 2.106566 ACAACACCATGCAAAAGGACA 58.893 42.857 9.85 0.00 0.00 4.02
580 584 2.699846 ACAACACCATGCAAAAGGACAT 59.300 40.909 9.85 0.00 0.00 3.06
581 585 3.243839 ACAACACCATGCAAAAGGACATC 60.244 43.478 9.85 0.00 0.00 3.06
582 586 1.895131 ACACCATGCAAAAGGACATCC 59.105 47.619 9.85 0.00 0.00 3.51
583 587 1.894466 CACCATGCAAAAGGACATCCA 59.106 47.619 9.85 0.00 38.89 3.41
584 588 1.895131 ACCATGCAAAAGGACATCCAC 59.105 47.619 9.85 0.00 38.89 4.02
585 589 1.205417 CCATGCAAAAGGACATCCACC 59.795 52.381 0.00 0.00 38.89 4.61
586 590 2.173519 CATGCAAAAGGACATCCACCT 58.826 47.619 0.00 0.00 39.69 4.00
587 591 3.355378 CATGCAAAAGGACATCCACCTA 58.645 45.455 0.00 0.00 36.67 3.08
588 592 3.517296 TGCAAAAGGACATCCACCTAA 57.483 42.857 0.00 0.00 36.67 2.69
589 593 3.838565 TGCAAAAGGACATCCACCTAAA 58.161 40.909 0.00 0.00 36.67 1.85
590 594 3.826157 TGCAAAAGGACATCCACCTAAAG 59.174 43.478 0.00 0.00 36.67 1.85
591 595 3.193479 GCAAAAGGACATCCACCTAAAGG 59.807 47.826 0.00 0.00 36.67 3.11
592 596 3.739401 AAAGGACATCCACCTAAAGGG 57.261 47.619 0.00 0.00 40.27 3.95
593 597 0.919710 AGGACATCCACCTAAAGGGC 59.080 55.000 0.00 0.00 40.27 5.19
594 598 0.623723 GGACATCCACCTAAAGGGCA 59.376 55.000 0.20 0.00 40.27 5.36
595 599 1.408822 GGACATCCACCTAAAGGGCAG 60.409 57.143 0.20 0.00 40.27 4.85
596 600 1.559682 GACATCCACCTAAAGGGCAGA 59.440 52.381 0.20 0.00 40.27 4.26
597 601 2.173569 GACATCCACCTAAAGGGCAGAT 59.826 50.000 0.20 0.00 40.27 2.90
598 602 2.092212 ACATCCACCTAAAGGGCAGATG 60.092 50.000 17.08 17.08 45.71 2.90
599 603 0.255890 TCCACCTAAAGGGCAGATGC 59.744 55.000 0.20 0.00 40.27 3.91
600 604 0.034186 CCACCTAAAGGGCAGATGCA 60.034 55.000 7.19 0.00 44.36 3.96
601 605 1.098050 CACCTAAAGGGCAGATGCAC 58.902 55.000 7.19 2.41 46.94 4.57
607 611 2.270850 GGGCAGATGCACCCGTAA 59.729 61.111 7.19 0.00 44.36 3.18
608 612 1.377987 GGGCAGATGCACCCGTAAA 60.378 57.895 7.19 0.00 44.36 2.01
609 613 0.963355 GGGCAGATGCACCCGTAAAA 60.963 55.000 7.19 0.00 44.36 1.52
610 614 0.451783 GGCAGATGCACCCGTAAAAG 59.548 55.000 7.19 0.00 44.36 2.27
611 615 1.448985 GCAGATGCACCCGTAAAAGA 58.551 50.000 0.00 0.00 41.59 2.52
612 616 1.810151 GCAGATGCACCCGTAAAAGAA 59.190 47.619 0.00 0.00 41.59 2.52
613 617 2.227865 GCAGATGCACCCGTAAAAGAAA 59.772 45.455 0.00 0.00 41.59 2.52
614 618 3.305064 GCAGATGCACCCGTAAAAGAAAA 60.305 43.478 0.00 0.00 41.59 2.29
615 619 4.475944 CAGATGCACCCGTAAAAGAAAAG 58.524 43.478 0.00 0.00 0.00 2.27
616 620 3.506067 AGATGCACCCGTAAAAGAAAAGG 59.494 43.478 0.00 0.00 0.00 3.11
617 621 2.657143 TGCACCCGTAAAAGAAAAGGT 58.343 42.857 0.00 0.00 0.00 3.50
618 622 3.025262 TGCACCCGTAAAAGAAAAGGTT 58.975 40.909 0.00 0.00 0.00 3.50
619 623 3.181485 TGCACCCGTAAAAGAAAAGGTTG 60.181 43.478 0.00 0.00 0.00 3.77
620 624 3.377439 CACCCGTAAAAGAAAAGGTTGC 58.623 45.455 0.00 0.00 0.00 4.17
621 625 3.025262 ACCCGTAAAAGAAAAGGTTGCA 58.975 40.909 0.00 0.00 0.00 4.08
622 626 3.447944 ACCCGTAAAAGAAAAGGTTGCAA 59.552 39.130 0.00 0.00 0.00 4.08
623 627 4.100344 ACCCGTAAAAGAAAAGGTTGCAAT 59.900 37.500 0.59 0.00 0.00 3.56
624 628 4.447389 CCCGTAAAAGAAAAGGTTGCAATG 59.553 41.667 0.59 0.00 0.00 2.82
625 629 5.285651 CCGTAAAAGAAAAGGTTGCAATGA 58.714 37.500 0.59 0.00 0.00 2.57
626 630 5.925969 CCGTAAAAGAAAAGGTTGCAATGAT 59.074 36.000 0.59 0.00 0.00 2.45
627 631 6.128849 CCGTAAAAGAAAAGGTTGCAATGATG 60.129 38.462 0.59 0.00 0.00 3.07
628 632 6.420604 CGTAAAAGAAAAGGTTGCAATGATGT 59.579 34.615 0.59 0.00 0.00 3.06
629 633 7.593273 CGTAAAAGAAAAGGTTGCAATGATGTA 59.407 33.333 0.59 0.00 0.00 2.29
630 634 7.951530 AAAAGAAAAGGTTGCAATGATGTAG 57.048 32.000 0.59 0.00 0.00 2.74
631 635 6.655078 AAGAAAAGGTTGCAATGATGTAGT 57.345 33.333 0.59 0.00 0.00 2.73
632 636 7.759489 AAGAAAAGGTTGCAATGATGTAGTA 57.241 32.000 0.59 0.00 0.00 1.82
633 637 7.383102 AGAAAAGGTTGCAATGATGTAGTAG 57.617 36.000 0.59 0.00 0.00 2.57
634 638 6.942576 AGAAAAGGTTGCAATGATGTAGTAGT 59.057 34.615 0.59 0.00 0.00 2.73
635 639 8.100791 AGAAAAGGTTGCAATGATGTAGTAGTA 58.899 33.333 0.59 0.00 0.00 1.82
636 640 8.807948 AAAAGGTTGCAATGATGTAGTAGTAT 57.192 30.769 0.59 0.00 0.00 2.12
637 641 9.899661 AAAAGGTTGCAATGATGTAGTAGTATA 57.100 29.630 0.59 0.00 0.00 1.47
638 642 8.888579 AAGGTTGCAATGATGTAGTAGTATAC 57.111 34.615 0.59 0.00 43.47 1.47
663 667 8.616076 ACTGACATAAACTATACACTACGTACC 58.384 37.037 0.00 0.00 31.27 3.34
664 668 8.504812 TGACATAAACTATACACTACGTACCA 57.495 34.615 0.00 0.00 31.27 3.25
665 669 8.397906 TGACATAAACTATACACTACGTACCAC 58.602 37.037 0.00 0.00 31.27 4.16
666 670 8.511604 ACATAAACTATACACTACGTACCACT 57.488 34.615 0.00 0.00 31.27 4.00
667 671 9.613428 ACATAAACTATACACTACGTACCACTA 57.387 33.333 0.00 0.00 31.27 2.74
669 673 6.610741 AACTATACACTACGTACCACTAGC 57.389 41.667 0.00 0.00 31.27 3.42
670 674 5.674525 ACTATACACTACGTACCACTAGCA 58.325 41.667 0.00 0.00 31.27 3.49
671 675 5.757320 ACTATACACTACGTACCACTAGCAG 59.243 44.000 0.00 0.00 31.27 4.24
672 676 1.471684 ACACTACGTACCACTAGCAGC 59.528 52.381 0.00 0.00 0.00 5.25
673 677 1.471287 CACTACGTACCACTAGCAGCA 59.529 52.381 0.00 0.00 0.00 4.41
674 678 1.743958 ACTACGTACCACTAGCAGCAG 59.256 52.381 0.00 0.00 0.00 4.24
675 679 2.014857 CTACGTACCACTAGCAGCAGA 58.985 52.381 0.00 0.00 0.00 4.26
676 680 0.811915 ACGTACCACTAGCAGCAGAG 59.188 55.000 0.00 0.00 0.00 3.35
677 681 1.095600 CGTACCACTAGCAGCAGAGA 58.904 55.000 0.00 0.00 0.00 3.10
678 682 1.064803 CGTACCACTAGCAGCAGAGAG 59.935 57.143 0.00 0.00 0.00 3.20
679 683 1.407258 GTACCACTAGCAGCAGAGAGG 59.593 57.143 8.67 8.67 0.00 3.69
680 684 0.040351 ACCACTAGCAGCAGAGAGGA 59.960 55.000 15.10 0.00 0.00 3.71
681 685 0.746063 CCACTAGCAGCAGAGAGGAG 59.254 60.000 5.21 0.00 0.00 3.69
682 686 0.746063 CACTAGCAGCAGAGAGGAGG 59.254 60.000 0.00 0.00 0.00 4.30
683 687 0.334676 ACTAGCAGCAGAGAGGAGGT 59.665 55.000 0.00 0.00 0.00 3.85
684 688 1.272985 ACTAGCAGCAGAGAGGAGGTT 60.273 52.381 0.00 0.00 0.00 3.50
685 689 2.024846 ACTAGCAGCAGAGAGGAGGTTA 60.025 50.000 0.00 0.00 0.00 2.85
686 690 2.173126 AGCAGCAGAGAGGAGGTTAT 57.827 50.000 0.00 0.00 0.00 1.89
687 691 2.038659 AGCAGCAGAGAGGAGGTTATC 58.961 52.381 0.00 0.00 0.00 1.75
688 692 1.759445 GCAGCAGAGAGGAGGTTATCA 59.241 52.381 0.00 0.00 0.00 2.15
689 693 2.224018 GCAGCAGAGAGGAGGTTATCAG 60.224 54.545 0.00 0.00 0.00 2.90
690 694 2.364970 CAGCAGAGAGGAGGTTATCAGG 59.635 54.545 0.00 0.00 0.00 3.86
691 695 1.069978 GCAGAGAGGAGGTTATCAGGC 59.930 57.143 0.00 0.00 0.00 4.85
692 696 2.392662 CAGAGAGGAGGTTATCAGGCA 58.607 52.381 0.00 0.00 0.00 4.75
693 697 2.768527 CAGAGAGGAGGTTATCAGGCAA 59.231 50.000 0.00 0.00 0.00 4.52
694 698 2.769095 AGAGAGGAGGTTATCAGGCAAC 59.231 50.000 0.00 0.00 0.00 4.17
695 699 2.501723 GAGAGGAGGTTATCAGGCAACA 59.498 50.000 0.00 0.00 41.41 3.33
696 700 2.237392 AGAGGAGGTTATCAGGCAACAC 59.763 50.000 0.00 0.00 41.41 3.32
697 701 1.985159 AGGAGGTTATCAGGCAACACA 59.015 47.619 0.00 0.00 41.41 3.72
698 702 2.578021 AGGAGGTTATCAGGCAACACAT 59.422 45.455 0.00 0.00 41.41 3.21
699 703 2.945668 GGAGGTTATCAGGCAACACATC 59.054 50.000 0.00 0.00 41.41 3.06
700 704 3.609853 GAGGTTATCAGGCAACACATCA 58.390 45.455 0.00 0.00 41.41 3.07
701 705 4.202441 GAGGTTATCAGGCAACACATCAT 58.798 43.478 0.00 0.00 41.41 2.45
702 706 3.949754 AGGTTATCAGGCAACACATCATG 59.050 43.478 0.00 0.00 41.41 3.07
703 707 3.489738 GGTTATCAGGCAACACATCATGC 60.490 47.826 0.00 0.00 41.82 4.06
708 712 1.153706 GCAACACATCATGCCAGGC 60.154 57.895 3.66 3.66 36.56 4.85
709 713 1.879737 GCAACACATCATGCCAGGCA 61.880 55.000 18.99 18.99 44.86 4.75
710 714 0.604073 CAACACATCATGCCAGGCAA 59.396 50.000 20.84 2.38 43.62 4.52
711 715 0.604578 AACACATCATGCCAGGCAAC 59.395 50.000 20.84 0.00 43.62 4.17
712 716 0.540133 ACACATCATGCCAGGCAACA 60.540 50.000 20.84 8.35 43.62 3.33
713 717 0.108992 CACATCATGCCAGGCAACAC 60.109 55.000 20.84 0.00 43.62 3.32
714 718 0.540133 ACATCATGCCAGGCAACACA 60.540 50.000 20.84 2.50 43.62 3.72
715 719 0.172578 CATCATGCCAGGCAACACAG 59.827 55.000 20.84 6.54 43.62 3.66
716 720 1.601419 ATCATGCCAGGCAACACAGC 61.601 55.000 20.84 0.00 43.62 4.40
717 721 2.203523 ATGCCAGGCAACACAGCA 60.204 55.556 20.84 0.00 43.62 4.41
718 722 2.273179 ATGCCAGGCAACACAGCAG 61.273 57.895 20.84 0.00 43.62 4.24
719 723 2.595463 GCCAGGCAACACAGCAGA 60.595 61.111 6.55 0.00 41.41 4.26
720 724 2.623915 GCCAGGCAACACAGCAGAG 61.624 63.158 6.55 0.00 41.41 3.35
721 725 1.071987 CCAGGCAACACAGCAGAGA 59.928 57.895 0.00 0.00 41.41 3.10
722 726 0.954449 CCAGGCAACACAGCAGAGAG 60.954 60.000 0.00 0.00 41.41 3.20
723 727 0.954449 CAGGCAACACAGCAGAGAGG 60.954 60.000 0.00 0.00 41.41 3.69
724 728 1.123861 AGGCAACACAGCAGAGAGGA 61.124 55.000 0.00 0.00 41.41 3.71
725 729 0.673022 GGCAACACAGCAGAGAGGAG 60.673 60.000 0.00 0.00 35.83 3.69
726 730 0.673022 GCAACACAGCAGAGAGGAGG 60.673 60.000 0.00 0.00 0.00 4.30
727 731 0.683973 CAACACAGCAGAGAGGAGGT 59.316 55.000 0.00 0.00 0.00 3.85
728 732 1.071385 CAACACAGCAGAGAGGAGGTT 59.929 52.381 0.00 0.00 0.00 3.50
755 759 4.149046 GGATATGCTTCGTCTTGATCGAAC 59.851 45.833 0.00 0.00 41.33 3.95
757 761 1.068816 TGCTTCGTCTTGATCGAACGA 60.069 47.619 11.53 11.53 41.33 3.85
758 762 1.317904 GCTTCGTCTTGATCGAACGAC 59.682 52.381 14.24 4.79 41.33 4.34
760 764 2.242769 TCGTCTTGATCGAACGACAG 57.757 50.000 11.53 0.00 34.36 3.51
763 767 1.071019 TCTTGATCGAACGACAGCGC 61.071 55.000 0.00 0.00 42.48 5.92
820 840 2.048023 TCCGCTACACCCGATTCGT 61.048 57.895 5.20 0.00 0.00 3.85
821 841 1.876714 CCGCTACACCCGATTCGTG 60.877 63.158 5.20 0.19 37.26 4.35
822 842 1.153901 CGCTACACCCGATTCGTGT 60.154 57.895 5.20 6.45 46.03 4.49
823 843 1.138047 CGCTACACCCGATTCGTGTC 61.138 60.000 5.20 0.00 43.29 3.67
824 844 1.138047 GCTACACCCGATTCGTGTCG 61.138 60.000 5.20 1.66 43.29 4.35
831 853 0.570734 CCGATTCGTGTCGCATGTAC 59.429 55.000 5.20 0.00 40.17 2.90
865 893 2.116827 TTGTTCGTATCGCCCCATTT 57.883 45.000 0.00 0.00 0.00 2.32
866 894 1.658994 TGTTCGTATCGCCCCATTTC 58.341 50.000 0.00 0.00 0.00 2.17
867 895 0.580104 GTTCGTATCGCCCCATTTCG 59.420 55.000 0.00 0.00 0.00 3.46
868 896 0.176219 TTCGTATCGCCCCATTTCGT 59.824 50.000 0.00 0.00 0.00 3.85
869 897 0.176219 TCGTATCGCCCCATTTCGTT 59.824 50.000 0.00 0.00 0.00 3.85
888 916 3.799755 GTTGACCGGGCATCGCAC 61.800 66.667 13.08 0.99 37.59 5.34
896 924 1.647545 CGGGCATCGCACTGACAAAT 61.648 55.000 0.00 0.00 0.00 2.32
937 987 2.015456 TGGACACTGTGACAGGATCT 57.985 50.000 17.92 0.00 35.51 2.75
949 1004 2.089980 ACAGGATCTTAGCACGTACGT 58.910 47.619 16.72 16.72 0.00 3.57
950 1005 3.273434 ACAGGATCTTAGCACGTACGTA 58.727 45.455 22.34 4.43 0.00 3.57
951 1006 3.311871 ACAGGATCTTAGCACGTACGTAG 59.688 47.826 22.34 14.92 0.00 3.51
952 1007 2.877168 AGGATCTTAGCACGTACGTAGG 59.123 50.000 22.34 11.14 0.00 3.18
967 1022 7.065085 CACGTACGTAGGGTAGTATATATGCTT 59.935 40.741 22.34 0.00 0.00 3.91
1116 1175 1.597854 CCACGTGCAAGCAGAGGAA 60.598 57.895 10.91 0.00 0.00 3.36
1118 1177 0.040958 CACGTGCAAGCAGAGGAAAC 60.041 55.000 0.82 0.00 0.00 2.78
1530 8981 0.179073 ACAATAAGCTCATCGGCGCT 60.179 50.000 7.64 0.00 38.30 5.92
1827 9278 2.028130 GTCATCTCCATGTCTCTCGGT 58.972 52.381 0.00 0.00 0.00 4.69
2326 9801 1.217511 TCGAGCGTCGACTACCTCT 59.782 57.895 14.70 2.62 44.82 3.69
2577 12807 1.303236 TGGGCCGACCTTCAACATG 60.303 57.895 0.00 0.00 41.11 3.21
2604 12834 1.958715 CACGTCCATGTCAACGCCA 60.959 57.895 11.13 0.00 42.47 5.69
2631 12861 3.731136 GGCATCGCCGCTTTGATA 58.269 55.556 0.00 0.00 39.62 2.15
2733 12963 3.270027 CAATCCCATACTCAACGAGCAA 58.730 45.455 0.00 0.00 32.04 3.91
2793 13024 2.679996 AACCCAATGAAGGCCGCC 60.680 61.111 0.00 0.00 0.00 6.13
2844 13075 3.079578 CGAGGATTACATCGGCTACCTA 58.920 50.000 0.00 0.00 44.74 3.08
2907 14620 1.251251 GGCCAATCAACTGCTTGACT 58.749 50.000 0.00 0.00 39.28 3.41
2926 14639 1.738350 CTACCGTCGTGATCAGTGACT 59.262 52.381 20.10 9.50 0.00 3.41
2987 14700 1.448540 CCTGGAATTCGACTGCGCT 60.449 57.895 9.73 0.00 37.46 5.92
3161 16380 3.695606 GTGGCCGAGGCAGAGTGA 61.696 66.667 16.65 0.00 44.11 3.41
3248 16469 2.426024 CCATCACCTTTGCCTGATCAAG 59.574 50.000 0.00 0.00 0.00 3.02
3294 16515 5.729510 GGAAGGATCCAAGAGCATACTATC 58.270 45.833 15.82 0.00 45.79 2.08
3297 16518 5.022787 AGGATCCAAGAGCATACTATCTCC 58.977 45.833 15.82 0.00 0.00 3.71
3298 16519 4.142271 GGATCCAAGAGCATACTATCTCCG 60.142 50.000 6.95 0.00 0.00 4.63
3299 16520 4.100279 TCCAAGAGCATACTATCTCCGA 57.900 45.455 0.00 0.00 0.00 4.55
3301 16522 3.057174 CCAAGAGCATACTATCTCCGACC 60.057 52.174 0.00 0.00 0.00 4.79
3302 16523 3.799432 AGAGCATACTATCTCCGACCT 57.201 47.619 0.00 0.00 0.00 3.85
3305 16707 4.521256 AGAGCATACTATCTCCGACCTTTC 59.479 45.833 0.00 0.00 0.00 2.62
3310 16712 6.461788 GCATACTATCTCCGACCTTTCTTTCT 60.462 42.308 0.00 0.00 0.00 2.52
3316 16718 2.160205 CCGACCTTTCTTTCTTTCCCC 58.840 52.381 0.00 0.00 0.00 4.81
3319 16721 3.422796 GACCTTTCTTTCTTTCCCCCTC 58.577 50.000 0.00 0.00 0.00 4.30
3321 16723 3.074687 ACCTTTCTTTCTTTCCCCCTCTC 59.925 47.826 0.00 0.00 0.00 3.20
3327 16729 4.042187 TCTTTCTTTCCCCCTCTCTCAAAG 59.958 45.833 0.00 0.00 0.00 2.77
3330 16732 4.097418 TCTTTCCCCCTCTCTCAAAGTAG 58.903 47.826 0.00 0.00 0.00 2.57
3331 16733 2.552093 TCCCCCTCTCTCAAAGTAGG 57.448 55.000 0.00 0.00 0.00 3.18
3332 16734 0.833949 CCCCCTCTCTCAAAGTAGGC 59.166 60.000 0.00 0.00 0.00 3.93
3333 16735 1.623834 CCCCCTCTCTCAAAGTAGGCT 60.624 57.143 0.00 0.00 0.00 4.58
3334 16736 2.192263 CCCCTCTCTCAAAGTAGGCTT 58.808 52.381 0.00 0.00 36.30 4.35
3336 16738 3.369997 CCCCTCTCTCAAAGTAGGCTTTC 60.370 52.174 0.00 0.00 42.54 2.62
3337 16739 3.516615 CCTCTCTCAAAGTAGGCTTTCG 58.483 50.000 0.00 0.00 42.54 3.46
3338 16740 3.516615 CTCTCTCAAAGTAGGCTTTCGG 58.483 50.000 0.00 0.00 42.54 4.30
3339 16741 2.003301 CTCTCAAAGTAGGCTTTCGGC 58.997 52.381 0.00 0.00 42.54 5.54
3351 16753 2.143925 GCTTTCGGCCTGATGTATACC 58.856 52.381 0.00 0.00 34.27 2.73
3352 16754 2.224305 GCTTTCGGCCTGATGTATACCT 60.224 50.000 0.00 0.00 34.27 3.08
3360 16849 5.480205 GGCCTGATGTATACCTAAAGCTAC 58.520 45.833 0.00 0.00 0.00 3.58
3366 16855 9.935241 CTGATGTATACCTAAAGCTACATGATT 57.065 33.333 0.00 0.00 35.51 2.57
3371 16860 7.715265 ATACCTAAAGCTACATGATTGAACG 57.285 36.000 0.00 0.00 0.00 3.95
3382 16871 4.094887 ACATGATTGAACGATACAAGGTGC 59.905 41.667 0.00 0.00 0.00 5.01
3398 16887 1.810755 GGTGCCGAGGAAAACCTTAAG 59.189 52.381 0.00 0.00 0.00 1.85
3437 16926 1.293924 CACGGTTGAGAGATGGCATC 58.706 55.000 19.78 19.78 0.00 3.91
3475 16964 3.459969 ACCCATTCCTAACCTTCTCCATC 59.540 47.826 0.00 0.00 0.00 3.51
3476 16965 3.459598 CCCATTCCTAACCTTCTCCATCA 59.540 47.826 0.00 0.00 0.00 3.07
3480 16969 3.910989 TCCTAACCTTCTCCATCATCGA 58.089 45.455 0.00 0.00 0.00 3.59
3486 16975 2.123342 CTTCTCCATCATCGACGAAGC 58.877 52.381 0.00 0.00 0.00 3.86
3498 16987 0.318762 GACGAAGCCTGACCTGAGTT 59.681 55.000 0.00 0.00 0.00 3.01
3581 17070 3.352512 TTGGAGGTGGCCAAGGTT 58.647 55.556 7.24 0.00 42.75 3.50
3619 17108 1.477377 GGCTGGTGGTCATATGCATCA 60.477 52.381 0.19 0.00 0.00 3.07
3625 17114 6.375174 GCTGGTGGTCATATGCATCATTATAA 59.625 38.462 0.19 0.00 0.00 0.98
3628 17117 7.944000 TGGTGGTCATATGCATCATTATAAGTT 59.056 33.333 0.19 0.00 0.00 2.66
3629 17118 8.454106 GGTGGTCATATGCATCATTATAAGTTC 58.546 37.037 0.19 0.00 0.00 3.01
3656 17145 6.239008 CCAAGTTGCCAAGAAAGAGTTCAATA 60.239 38.462 0.00 0.00 36.09 1.90
3661 17150 5.592282 TGCCAAGAAAGAGTTCAATAACACA 59.408 36.000 0.00 0.00 38.12 3.72
3662 17151 6.265196 TGCCAAGAAAGAGTTCAATAACACAT 59.735 34.615 0.00 0.00 38.12 3.21
3685 17174 9.975218 ACATGTAAGAAACTAGGGTATTTTCAT 57.025 29.630 0.00 0.00 31.90 2.57
3695 17184 2.540101 GGGTATTTTCATGAGTCGCTCG 59.460 50.000 0.00 0.00 32.35 5.03
3696 17185 3.187700 GGTATTTTCATGAGTCGCTCGT 58.812 45.455 0.00 0.08 32.35 4.18
3747 17236 7.459394 TCTCGTATCGTTTTTCATGGATTAC 57.541 36.000 0.00 0.00 0.00 1.89
3765 17254 7.010160 TGGATTACCATCTTGAGGTTCTTTTT 58.990 34.615 0.00 0.00 41.77 1.94
3791 17280 8.662781 TGGGAATAAGAAAATCGTCTTGATAG 57.337 34.615 0.00 0.00 38.33 2.08
3803 17292 7.881643 ATCGTCTTGATAGCAATCATTAGAC 57.118 36.000 0.00 8.95 42.00 2.59
3826 17315 5.940470 ACCAATAGAACAAAGGTAAGCTCTG 59.060 40.000 0.00 0.00 0.00 3.35
3867 17356 4.226620 AGGATTGTAGGTCCATTACGGTTT 59.773 41.667 0.00 0.00 38.25 3.27
3880 17369 0.685097 ACGGTTTTGCTCCTGCTCTA 59.315 50.000 0.00 0.00 40.48 2.43
3881 17370 1.079503 CGGTTTTGCTCCTGCTCTAC 58.920 55.000 0.00 0.00 40.48 2.59
3891 17380 0.826715 CCTGCTCTACTGGCTTGCTA 59.173 55.000 0.00 0.00 0.00 3.49
3974 17463 0.708209 TGACCCTGGCCTAGTCTACA 59.292 55.000 17.49 2.71 0.00 2.74
3988 17477 6.041069 GCCTAGTCTACAACATTACTCCTGAT 59.959 42.308 0.00 0.00 0.00 2.90
4008 17497 6.369065 CCTGATAATTACATCGGCTACCTTTC 59.631 42.308 0.00 0.00 31.05 2.62
4035 17524 0.251653 TACACGAGCCAGGAGGTCTT 60.252 55.000 0.00 0.00 41.03 3.01
4046 17535 1.648467 GGAGGTCTTGGTGATTGCGC 61.648 60.000 0.00 0.00 0.00 6.09
4048 17537 2.202349 GTCTTGGTGATTGCGCGC 60.202 61.111 27.26 27.26 0.00 6.86
4073 17562 1.078759 GATCGACTGCTTGACCACCG 61.079 60.000 0.00 0.00 0.00 4.94
4090 17583 1.272490 ACCGTCGTGATCATTGTCTGT 59.728 47.619 0.00 0.00 0.00 3.41
4179 17672 1.860078 CAAGGTGAAGAACGTCGGC 59.140 57.895 0.00 0.00 0.00 5.54
4201 17694 0.457337 GGTGCCTTCGGTGTACTACG 60.457 60.000 0.00 0.00 0.00 3.51
4240 17733 0.876777 CAACACCGTAAGCGTGGACA 60.877 55.000 0.00 0.00 41.08 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.452651 CAACCATGCCGCTGGATCT 60.453 57.895 13.75 0.00 39.73 2.75
139 140 0.960364 GAAAGGGATGTTGCTCGCCA 60.960 55.000 0.00 0.00 0.00 5.69
250 251 3.905968 TCAATCACCTCCATGCAATCAT 58.094 40.909 0.00 0.00 0.00 2.45
356 359 5.577164 CCTAGGACAATGACAGAACTTAACG 59.423 44.000 1.05 0.00 0.00 3.18
392 395 0.322456 TAGCCAACAAATCAGCCGCT 60.322 50.000 0.00 0.00 0.00 5.52
451 454 0.250770 AAACAGAAAGTCCGGAGCCC 60.251 55.000 3.06 0.00 0.00 5.19
456 459 6.574350 AGAGTATATCAAACAGAAAGTCCGG 58.426 40.000 0.00 0.00 0.00 5.14
468 472 7.148086 GGCCACATTGTTTGAGAGTATATCAAA 60.148 37.037 0.00 0.00 42.73 2.69
474 478 3.010584 AGGGCCACATTGTTTGAGAGTAT 59.989 43.478 6.18 0.00 0.00 2.12
491 495 1.337118 TTTCATGTGGAAACAGGGCC 58.663 50.000 0.00 0.00 44.46 5.80
546 550 3.132160 TGGTGTTGTAACCATGTACGTG 58.868 45.455 8.18 8.18 45.43 4.49
547 551 3.472283 TGGTGTTGTAACCATGTACGT 57.528 42.857 0.00 0.00 45.43 3.57
555 559 3.068873 TCCTTTTGCATGGTGTTGTAACC 59.931 43.478 0.00 0.00 40.94 2.85
556 560 4.048504 GTCCTTTTGCATGGTGTTGTAAC 58.951 43.478 0.00 0.00 0.00 2.50
557 561 3.701542 TGTCCTTTTGCATGGTGTTGTAA 59.298 39.130 0.00 0.00 0.00 2.41
558 562 3.291584 TGTCCTTTTGCATGGTGTTGTA 58.708 40.909 0.00 0.00 0.00 2.41
559 563 2.106566 TGTCCTTTTGCATGGTGTTGT 58.893 42.857 0.00 0.00 0.00 3.32
560 564 2.886862 TGTCCTTTTGCATGGTGTTG 57.113 45.000 0.00 0.00 0.00 3.33
561 565 2.299867 GGATGTCCTTTTGCATGGTGTT 59.700 45.455 0.00 0.00 0.00 3.32
562 566 1.895131 GGATGTCCTTTTGCATGGTGT 59.105 47.619 0.00 0.00 0.00 4.16
563 567 1.894466 TGGATGTCCTTTTGCATGGTG 59.106 47.619 0.09 0.00 36.82 4.17
564 568 1.895131 GTGGATGTCCTTTTGCATGGT 59.105 47.619 0.09 0.00 36.82 3.55
565 569 1.205417 GGTGGATGTCCTTTTGCATGG 59.795 52.381 0.09 0.00 36.82 3.66
566 570 2.173519 AGGTGGATGTCCTTTTGCATG 58.826 47.619 0.09 0.00 36.82 4.06
567 571 2.610438 AGGTGGATGTCCTTTTGCAT 57.390 45.000 0.09 0.00 36.82 3.96
568 572 3.517296 TTAGGTGGATGTCCTTTTGCA 57.483 42.857 0.09 0.00 36.60 4.08
569 573 3.193479 CCTTTAGGTGGATGTCCTTTTGC 59.807 47.826 0.09 0.00 36.60 3.68
570 574 3.763897 CCCTTTAGGTGGATGTCCTTTTG 59.236 47.826 0.09 0.00 36.60 2.44
571 575 3.817931 GCCCTTTAGGTGGATGTCCTTTT 60.818 47.826 0.09 0.00 38.26 2.27
572 576 2.291605 GCCCTTTAGGTGGATGTCCTTT 60.292 50.000 0.09 0.00 38.26 3.11
573 577 1.285078 GCCCTTTAGGTGGATGTCCTT 59.715 52.381 0.09 0.00 38.26 3.36
574 578 0.919710 GCCCTTTAGGTGGATGTCCT 59.080 55.000 0.09 0.00 38.26 3.85
575 579 0.623723 TGCCCTTTAGGTGGATGTCC 59.376 55.000 0.00 0.00 38.26 4.02
576 580 1.559682 TCTGCCCTTTAGGTGGATGTC 59.440 52.381 0.00 0.00 38.26 3.06
577 581 1.668826 TCTGCCCTTTAGGTGGATGT 58.331 50.000 0.00 0.00 38.26 3.06
578 582 2.579873 CATCTGCCCTTTAGGTGGATG 58.420 52.381 0.00 2.67 38.97 3.51
579 583 1.133668 GCATCTGCCCTTTAGGTGGAT 60.134 52.381 0.00 0.00 38.26 3.41
580 584 0.255890 GCATCTGCCCTTTAGGTGGA 59.744 55.000 0.00 0.00 38.26 4.02
581 585 0.034186 TGCATCTGCCCTTTAGGTGG 60.034 55.000 0.00 0.00 41.18 4.61
582 586 1.098050 GTGCATCTGCCCTTTAGGTG 58.902 55.000 0.00 0.00 41.18 4.00
583 587 0.034089 GGTGCATCTGCCCTTTAGGT 60.034 55.000 0.00 0.00 41.18 3.08
584 588 0.753111 GGGTGCATCTGCCCTTTAGG 60.753 60.000 2.83 0.00 41.63 2.69
585 589 1.097547 CGGGTGCATCTGCCCTTTAG 61.098 60.000 8.38 0.00 42.67 1.85
586 590 1.077787 CGGGTGCATCTGCCCTTTA 60.078 57.895 8.38 0.00 42.67 1.85
587 591 1.847798 TACGGGTGCATCTGCCCTTT 61.848 55.000 5.46 0.00 42.67 3.11
588 592 1.847798 TTACGGGTGCATCTGCCCTT 61.848 55.000 5.46 0.00 42.67 3.95
589 593 1.847798 TTTACGGGTGCATCTGCCCT 61.848 55.000 5.46 0.00 42.67 5.19
590 594 0.963355 TTTTACGGGTGCATCTGCCC 60.963 55.000 5.46 2.35 41.18 5.36
591 595 0.451783 CTTTTACGGGTGCATCTGCC 59.548 55.000 5.46 0.00 41.18 4.85
592 596 1.448985 TCTTTTACGGGTGCATCTGC 58.551 50.000 5.46 0.00 42.50 4.26
593 597 4.475944 CTTTTCTTTTACGGGTGCATCTG 58.524 43.478 3.61 3.61 0.00 2.90
594 598 3.506067 CCTTTTCTTTTACGGGTGCATCT 59.494 43.478 0.00 0.00 0.00 2.90
595 599 3.254903 ACCTTTTCTTTTACGGGTGCATC 59.745 43.478 0.00 0.00 0.00 3.91
596 600 3.227614 ACCTTTTCTTTTACGGGTGCAT 58.772 40.909 0.00 0.00 0.00 3.96
597 601 2.657143 ACCTTTTCTTTTACGGGTGCA 58.343 42.857 0.00 0.00 0.00 4.57
598 602 3.377439 CAACCTTTTCTTTTACGGGTGC 58.623 45.455 0.00 0.00 0.00 5.01
599 603 3.181485 TGCAACCTTTTCTTTTACGGGTG 60.181 43.478 0.00 0.00 35.58 4.61
600 604 3.025262 TGCAACCTTTTCTTTTACGGGT 58.975 40.909 0.00 0.00 0.00 5.28
601 605 3.719173 TGCAACCTTTTCTTTTACGGG 57.281 42.857 0.00 0.00 0.00 5.28
602 606 5.285651 TCATTGCAACCTTTTCTTTTACGG 58.714 37.500 0.00 0.00 0.00 4.02
603 607 6.420604 ACATCATTGCAACCTTTTCTTTTACG 59.579 34.615 0.00 0.00 0.00 3.18
604 608 7.713764 ACATCATTGCAACCTTTTCTTTTAC 57.286 32.000 0.00 0.00 0.00 2.01
605 609 8.637986 ACTACATCATTGCAACCTTTTCTTTTA 58.362 29.630 0.00 0.00 0.00 1.52
606 610 7.500141 ACTACATCATTGCAACCTTTTCTTTT 58.500 30.769 0.00 0.00 0.00 2.27
607 611 7.054491 ACTACATCATTGCAACCTTTTCTTT 57.946 32.000 0.00 0.00 0.00 2.52
608 612 6.655078 ACTACATCATTGCAACCTTTTCTT 57.345 33.333 0.00 0.00 0.00 2.52
609 613 6.942576 ACTACTACATCATTGCAACCTTTTCT 59.057 34.615 0.00 0.00 0.00 2.52
610 614 7.145932 ACTACTACATCATTGCAACCTTTTC 57.854 36.000 0.00 0.00 0.00 2.29
611 615 8.807948 ATACTACTACATCATTGCAACCTTTT 57.192 30.769 0.00 0.00 0.00 2.27
612 616 9.326413 GTATACTACTACATCATTGCAACCTTT 57.674 33.333 0.00 0.00 0.00 3.11
613 617 8.705594 AGTATACTACTACATCATTGCAACCTT 58.294 33.333 2.75 0.00 37.23 3.50
614 618 8.144478 CAGTATACTACTACATCATTGCAACCT 58.856 37.037 4.74 0.00 37.23 3.50
615 619 8.141909 TCAGTATACTACTACATCATTGCAACC 58.858 37.037 4.74 0.00 37.23 3.77
616 620 8.969267 GTCAGTATACTACTACATCATTGCAAC 58.031 37.037 4.74 0.00 37.23 4.17
617 621 8.691797 TGTCAGTATACTACTACATCATTGCAA 58.308 33.333 4.74 0.00 37.23 4.08
618 622 8.232913 TGTCAGTATACTACTACATCATTGCA 57.767 34.615 4.74 0.00 37.23 4.08
637 641 8.616076 GGTACGTAGTGTATAGTTTATGTCAGT 58.384 37.037 0.00 0.00 45.73 3.41
638 642 8.615211 TGGTACGTAGTGTATAGTTTATGTCAG 58.385 37.037 0.00 0.00 45.73 3.51
639 643 8.397906 GTGGTACGTAGTGTATAGTTTATGTCA 58.602 37.037 0.00 0.00 45.73 3.58
640 644 8.616076 AGTGGTACGTAGTGTATAGTTTATGTC 58.384 37.037 0.00 0.00 45.73 3.06
641 645 8.511604 AGTGGTACGTAGTGTATAGTTTATGT 57.488 34.615 0.00 0.00 45.73 2.29
643 647 8.778358 GCTAGTGGTACGTAGTGTATAGTTTAT 58.222 37.037 0.00 0.00 45.73 1.40
644 648 7.768582 TGCTAGTGGTACGTAGTGTATAGTTTA 59.231 37.037 0.00 0.00 45.73 2.01
645 649 6.599244 TGCTAGTGGTACGTAGTGTATAGTTT 59.401 38.462 0.00 0.00 45.73 2.66
646 650 6.115446 TGCTAGTGGTACGTAGTGTATAGTT 58.885 40.000 0.00 0.00 45.73 2.24
647 651 5.674525 TGCTAGTGGTACGTAGTGTATAGT 58.325 41.667 0.00 0.00 45.73 2.12
648 652 5.333952 GCTGCTAGTGGTACGTAGTGTATAG 60.334 48.000 0.00 0.00 45.73 1.31
649 653 4.512944 GCTGCTAGTGGTACGTAGTGTATA 59.487 45.833 0.00 0.00 45.73 1.47
650 654 3.314635 GCTGCTAGTGGTACGTAGTGTAT 59.685 47.826 0.00 0.00 45.73 2.29
651 655 2.679837 GCTGCTAGTGGTACGTAGTGTA 59.320 50.000 0.00 0.00 45.73 2.90
652 656 1.471684 GCTGCTAGTGGTACGTAGTGT 59.528 52.381 0.00 0.00 45.73 3.55
653 657 1.471287 TGCTGCTAGTGGTACGTAGTG 59.529 52.381 0.00 0.00 45.73 2.74
655 659 2.014857 TCTGCTGCTAGTGGTACGTAG 58.985 52.381 0.00 0.00 0.00 3.51
656 660 2.014857 CTCTGCTGCTAGTGGTACGTA 58.985 52.381 0.00 0.00 0.00 3.57
657 661 0.811915 CTCTGCTGCTAGTGGTACGT 59.188 55.000 0.00 0.00 0.00 3.57
658 662 1.064803 CTCTCTGCTGCTAGTGGTACG 59.935 57.143 0.00 0.00 0.00 3.67
659 663 1.407258 CCTCTCTGCTGCTAGTGGTAC 59.593 57.143 0.00 0.00 0.00 3.34
660 664 1.285078 TCCTCTCTGCTGCTAGTGGTA 59.715 52.381 17.24 7.25 0.00 3.25
661 665 0.040351 TCCTCTCTGCTGCTAGTGGT 59.960 55.000 17.24 0.00 0.00 4.16
662 666 0.746063 CTCCTCTCTGCTGCTAGTGG 59.254 60.000 13.84 13.84 0.00 4.00
663 667 0.746063 CCTCCTCTCTGCTGCTAGTG 59.254 60.000 0.00 0.00 0.00 2.74
664 668 0.334676 ACCTCCTCTCTGCTGCTAGT 59.665 55.000 0.00 0.00 0.00 2.57
665 669 1.484038 AACCTCCTCTCTGCTGCTAG 58.516 55.000 0.00 0.00 0.00 3.42
666 670 2.828661 TAACCTCCTCTCTGCTGCTA 57.171 50.000 0.00 0.00 0.00 3.49
667 671 2.038659 GATAACCTCCTCTCTGCTGCT 58.961 52.381 0.00 0.00 0.00 4.24
668 672 1.759445 TGATAACCTCCTCTCTGCTGC 59.241 52.381 0.00 0.00 0.00 5.25
669 673 2.364970 CCTGATAACCTCCTCTCTGCTG 59.635 54.545 0.00 0.00 0.00 4.41
670 674 2.676748 CCTGATAACCTCCTCTCTGCT 58.323 52.381 0.00 0.00 0.00 4.24
671 675 1.069978 GCCTGATAACCTCCTCTCTGC 59.930 57.143 0.00 0.00 0.00 4.26
672 676 2.392662 TGCCTGATAACCTCCTCTCTG 58.607 52.381 0.00 0.00 0.00 3.35
673 677 2.769095 GTTGCCTGATAACCTCCTCTCT 59.231 50.000 0.00 0.00 0.00 3.10
674 678 2.501723 TGTTGCCTGATAACCTCCTCTC 59.498 50.000 0.00 0.00 0.00 3.20
675 679 2.237392 GTGTTGCCTGATAACCTCCTCT 59.763 50.000 0.00 0.00 0.00 3.69
676 680 2.027192 TGTGTTGCCTGATAACCTCCTC 60.027 50.000 0.00 0.00 0.00 3.71
677 681 1.985159 TGTGTTGCCTGATAACCTCCT 59.015 47.619 0.00 0.00 0.00 3.69
678 682 2.489938 TGTGTTGCCTGATAACCTCC 57.510 50.000 0.00 0.00 0.00 4.30
679 683 3.609853 TGATGTGTTGCCTGATAACCTC 58.390 45.455 0.00 0.00 0.00 3.85
680 684 3.719268 TGATGTGTTGCCTGATAACCT 57.281 42.857 0.00 0.00 0.00 3.50
681 685 3.489738 GCATGATGTGTTGCCTGATAACC 60.490 47.826 0.00 0.00 32.66 2.85
682 686 3.699067 GCATGATGTGTTGCCTGATAAC 58.301 45.455 0.00 0.00 32.66 1.89
690 694 1.153706 GCCTGGCATGATGTGTTGC 60.154 57.895 15.17 0.00 38.14 4.17
691 695 0.604073 TTGCCTGGCATGATGTGTTG 59.396 50.000 24.03 0.00 38.76 3.33
692 696 0.604578 GTTGCCTGGCATGATGTGTT 59.395 50.000 24.03 0.00 38.76 3.32
693 697 0.540133 TGTTGCCTGGCATGATGTGT 60.540 50.000 24.03 0.00 38.76 3.72
694 698 0.108992 GTGTTGCCTGGCATGATGTG 60.109 55.000 24.03 0.00 38.76 3.21
695 699 0.540133 TGTGTTGCCTGGCATGATGT 60.540 50.000 24.03 0.00 38.76 3.06
696 700 0.172578 CTGTGTTGCCTGGCATGATG 59.827 55.000 24.03 8.38 38.76 3.07
697 701 1.601419 GCTGTGTTGCCTGGCATGAT 61.601 55.000 24.03 0.00 38.76 2.45
698 702 2.270257 GCTGTGTTGCCTGGCATGA 61.270 57.895 24.03 9.23 38.76 3.07
699 703 2.260434 GCTGTGTTGCCTGGCATG 59.740 61.111 24.03 11.35 38.76 4.06
700 704 2.203523 TGCTGTGTTGCCTGGCAT 60.204 55.556 24.03 0.00 38.76 4.40
701 705 2.908428 CTGCTGTGTTGCCTGGCA 60.908 61.111 19.30 19.30 36.47 4.92
702 706 2.595463 TCTGCTGTGTTGCCTGGC 60.595 61.111 12.87 12.87 0.00 4.85
703 707 0.954449 CTCTCTGCTGTGTTGCCTGG 60.954 60.000 0.00 0.00 0.00 4.45
704 708 0.954449 CCTCTCTGCTGTGTTGCCTG 60.954 60.000 0.00 0.00 0.00 4.85
705 709 1.123861 TCCTCTCTGCTGTGTTGCCT 61.124 55.000 0.00 0.00 0.00 4.75
706 710 0.673022 CTCCTCTCTGCTGTGTTGCC 60.673 60.000 0.00 0.00 0.00 4.52
707 711 0.673022 CCTCCTCTCTGCTGTGTTGC 60.673 60.000 0.00 0.00 0.00 4.17
708 712 0.683973 ACCTCCTCTCTGCTGTGTTG 59.316 55.000 0.00 0.00 0.00 3.33
709 713 1.428869 AACCTCCTCTCTGCTGTGTT 58.571 50.000 0.00 0.00 0.00 3.32
710 714 1.896465 GTAACCTCCTCTCTGCTGTGT 59.104 52.381 0.00 0.00 0.00 3.72
711 715 2.094286 CAGTAACCTCCTCTCTGCTGTG 60.094 54.545 0.00 0.00 0.00 3.66
712 716 2.175202 CAGTAACCTCCTCTCTGCTGT 58.825 52.381 0.00 0.00 0.00 4.40
713 717 1.480137 CCAGTAACCTCCTCTCTGCTG 59.520 57.143 0.00 0.00 0.00 4.41
714 718 1.359474 TCCAGTAACCTCCTCTCTGCT 59.641 52.381 0.00 0.00 0.00 4.24
715 719 1.853963 TCCAGTAACCTCCTCTCTGC 58.146 55.000 0.00 0.00 0.00 4.26
716 720 4.021544 GCATATCCAGTAACCTCCTCTCTG 60.022 50.000 0.00 0.00 0.00 3.35
717 721 4.140805 AGCATATCCAGTAACCTCCTCTCT 60.141 45.833 0.00 0.00 0.00 3.10
718 722 4.156477 AGCATATCCAGTAACCTCCTCTC 58.844 47.826 0.00 0.00 0.00 3.20
719 723 4.206244 AGCATATCCAGTAACCTCCTCT 57.794 45.455 0.00 0.00 0.00 3.69
720 724 4.559704 CGAAGCATATCCAGTAACCTCCTC 60.560 50.000 0.00 0.00 0.00 3.71
721 725 3.322254 CGAAGCATATCCAGTAACCTCCT 59.678 47.826 0.00 0.00 0.00 3.69
722 726 3.069729 ACGAAGCATATCCAGTAACCTCC 59.930 47.826 0.00 0.00 0.00 4.30
723 727 4.038162 AGACGAAGCATATCCAGTAACCTC 59.962 45.833 0.00 0.00 0.00 3.85
724 728 3.961408 AGACGAAGCATATCCAGTAACCT 59.039 43.478 0.00 0.00 0.00 3.50
725 729 4.323553 AGACGAAGCATATCCAGTAACC 57.676 45.455 0.00 0.00 0.00 2.85
726 730 5.348986 TCAAGACGAAGCATATCCAGTAAC 58.651 41.667 0.00 0.00 0.00 2.50
727 731 5.592104 TCAAGACGAAGCATATCCAGTAA 57.408 39.130 0.00 0.00 0.00 2.24
728 732 5.562890 CGATCAAGACGAAGCATATCCAGTA 60.563 44.000 0.00 0.00 0.00 2.74
795 807 2.398554 GGGTGTAGCGGACGTACGA 61.399 63.158 27.46 0.00 35.47 3.43
820 840 1.600013 GTTGGTTGTGTACATGCGACA 59.400 47.619 0.00 0.00 0.00 4.35
821 841 1.397945 CGTTGGTTGTGTACATGCGAC 60.398 52.381 0.00 0.00 0.00 5.19
822 842 0.862490 CGTTGGTTGTGTACATGCGA 59.138 50.000 0.00 0.00 0.00 5.10
823 843 0.724453 GCGTTGGTTGTGTACATGCG 60.724 55.000 0.00 0.00 0.00 4.73
824 844 0.386731 GGCGTTGGTTGTGTACATGC 60.387 55.000 0.00 0.00 0.00 4.06
831 853 0.103937 AACAATGGGCGTTGGTTGTG 59.896 50.000 6.27 0.00 35.20 3.33
865 893 3.185299 ATGCCCGGTCAACCAACGA 62.185 57.895 0.00 0.00 35.14 3.85
866 894 2.671619 ATGCCCGGTCAACCAACG 60.672 61.111 0.00 0.00 35.14 4.10
867 895 2.686816 CGATGCCCGGTCAACCAAC 61.687 63.158 0.00 0.00 35.14 3.77
868 896 2.359354 CGATGCCCGGTCAACCAA 60.359 61.111 0.00 0.00 35.14 3.67
888 916 3.119245 CCTCCAAATGCCAGATTTGTCAG 60.119 47.826 7.09 3.53 37.32 3.51
896 924 5.135383 CAATAGATTCCTCCAAATGCCAGA 58.865 41.667 0.00 0.00 0.00 3.86
937 987 2.985896 ACTACCCTACGTACGTGCTAA 58.014 47.619 30.25 9.86 0.00 3.09
949 1004 6.376299 CGTGTGGAAGCATATATACTACCCTA 59.624 42.308 6.10 0.00 0.00 3.53
950 1005 5.185249 CGTGTGGAAGCATATATACTACCCT 59.815 44.000 6.10 0.00 0.00 4.34
951 1006 5.184479 TCGTGTGGAAGCATATATACTACCC 59.816 44.000 0.00 0.00 0.00 3.69
952 1007 6.263516 TCGTGTGGAAGCATATATACTACC 57.736 41.667 0.00 0.00 0.00 3.18
967 1022 0.678950 TGAGATGCTGTTCGTGTGGA 59.321 50.000 0.00 0.00 0.00 4.02
1116 1175 2.898343 GTGCCGAACACGTGGGTT 60.898 61.111 21.57 5.72 40.07 4.11
1188 1247 2.433491 TGATGGTACGCGTGCACC 60.433 61.111 28.13 24.77 35.24 5.01
1581 9032 2.642254 AAACTCATCGACCGGCGGA 61.642 57.895 35.78 11.41 41.33 5.54
1714 9165 3.788333 TCCGTAGCACACCTTGTATAC 57.212 47.619 0.00 0.00 0.00 1.47
1980 9443 4.408821 GAGCGGTCCATGGTGCCA 62.409 66.667 21.77 0.00 0.00 4.92
1983 9446 1.153369 AATCGAGCGGTCCATGGTG 60.153 57.895 12.58 4.31 0.00 4.17
2376 9851 0.325860 TACCCCTGAAGCCCATACGT 60.326 55.000 0.00 0.00 0.00 3.57
2418 9895 2.603412 CGAGAAGAAGATGATCGACGGG 60.603 54.545 0.00 0.00 35.47 5.28
2462 12692 1.598130 GGCTTCAGAACGCCAGTGT 60.598 57.895 15.15 0.00 45.59 3.55
2577 12807 1.592669 CATGGACGTGCCGGAGATC 60.593 63.158 5.05 0.00 40.66 2.75
2631 12861 1.600916 GTCCGGGTGCTTGCTCTTT 60.601 57.895 0.00 0.00 0.00 2.52
2793 13024 1.134580 TCGTAGACTAGTCCAGGGTCG 60.135 57.143 19.38 13.89 35.42 4.79
2844 13075 1.480545 TGGCTCGTGTACATGCTACAT 59.519 47.619 10.38 0.00 0.00 2.29
2907 14620 1.467342 CAGTCACTGATCACGACGGTA 59.533 52.381 0.00 0.00 34.80 4.02
2926 14639 1.678728 CGAAGGGTAATTCAGCAGGCA 60.679 52.381 0.00 0.00 0.00 4.75
2987 14700 3.121406 TTGCGCCTTACCACCACCA 62.121 57.895 4.18 0.00 0.00 4.17
3161 16380 4.790962 CCTGCAGCACCCTCGCAT 62.791 66.667 8.66 0.00 34.63 4.73
3248 16469 2.679837 TCTCTCATGCCGAAAATCAAGC 59.320 45.455 0.00 0.00 0.00 4.01
3288 16509 7.363617 GGAAAGAAAGAAAGGTCGGAGATAGTA 60.364 40.741 0.00 0.00 40.67 1.82
3289 16510 6.361768 AAAGAAAGAAAGGTCGGAGATAGT 57.638 37.500 0.00 0.00 40.67 2.12
3290 16511 5.813157 GGAAAGAAAGAAAGGTCGGAGATAG 59.187 44.000 0.00 0.00 40.67 2.08
3294 16515 3.075148 GGGAAAGAAAGAAAGGTCGGAG 58.925 50.000 0.00 0.00 0.00 4.63
3297 16518 2.160205 GGGGGAAAGAAAGAAAGGTCG 58.840 52.381 0.00 0.00 0.00 4.79
3298 16519 3.074687 AGAGGGGGAAAGAAAGAAAGGTC 59.925 47.826 0.00 0.00 0.00 3.85
3299 16520 3.064412 AGAGGGGGAAAGAAAGAAAGGT 58.936 45.455 0.00 0.00 0.00 3.50
3301 16522 4.042187 TGAGAGAGGGGGAAAGAAAGAAAG 59.958 45.833 0.00 0.00 0.00 2.62
3302 16523 3.980698 TGAGAGAGGGGGAAAGAAAGAAA 59.019 43.478 0.00 0.00 0.00 2.52
3305 16707 4.202514 ACTTTGAGAGAGGGGGAAAGAAAG 60.203 45.833 0.00 0.00 0.00 2.62
3310 16712 3.182152 CCTACTTTGAGAGAGGGGGAAA 58.818 50.000 0.00 0.00 0.00 3.13
3316 16718 3.516615 CGAAAGCCTACTTTGAGAGAGG 58.483 50.000 0.00 0.00 46.20 3.69
3319 16721 2.003301 GCCGAAAGCCTACTTTGAGAG 58.997 52.381 0.00 0.00 46.20 3.20
3331 16733 2.143925 GGTATACATCAGGCCGAAAGC 58.856 52.381 5.01 0.00 42.60 3.51
3332 16734 3.753294 AGGTATACATCAGGCCGAAAG 57.247 47.619 5.01 0.00 0.00 2.62
3333 16735 5.607477 CTTTAGGTATACATCAGGCCGAAA 58.393 41.667 5.01 0.00 0.00 3.46
3334 16736 4.502604 GCTTTAGGTATACATCAGGCCGAA 60.503 45.833 5.01 0.00 0.00 4.30
3336 16738 3.006967 AGCTTTAGGTATACATCAGGCCG 59.993 47.826 5.01 0.00 0.00 6.13
3337 16739 4.625607 AGCTTTAGGTATACATCAGGCC 57.374 45.455 5.01 0.00 0.00 5.19
3338 16740 6.097915 TGTAGCTTTAGGTATACATCAGGC 57.902 41.667 5.01 1.27 0.00 4.85
3339 16741 7.896811 TCATGTAGCTTTAGGTATACATCAGG 58.103 38.462 5.01 0.00 36.87 3.86
3340 16742 9.935241 AATCATGTAGCTTTAGGTATACATCAG 57.065 33.333 5.01 0.00 36.87 2.90
3341 16743 9.710900 CAATCATGTAGCTTTAGGTATACATCA 57.289 33.333 5.01 0.00 36.87 3.07
3345 16747 8.700644 CGTTCAATCATGTAGCTTTAGGTATAC 58.299 37.037 0.00 0.00 0.00 1.47
3347 16749 7.497595 TCGTTCAATCATGTAGCTTTAGGTAT 58.502 34.615 0.00 0.00 0.00 2.73
3349 16751 5.730550 TCGTTCAATCATGTAGCTTTAGGT 58.269 37.500 0.00 0.00 0.00 3.08
3350 16752 6.851222 ATCGTTCAATCATGTAGCTTTAGG 57.149 37.500 0.00 0.00 0.00 2.69
3351 16753 8.352752 TGTATCGTTCAATCATGTAGCTTTAG 57.647 34.615 0.00 0.00 0.00 1.85
3352 16754 8.710835 TTGTATCGTTCAATCATGTAGCTTTA 57.289 30.769 0.00 0.00 0.00 1.85
3360 16849 4.496341 GGCACCTTGTATCGTTCAATCATG 60.496 45.833 0.00 0.00 0.00 3.07
3366 16855 0.604073 TCGGCACCTTGTATCGTTCA 59.396 50.000 0.00 0.00 0.00 3.18
3371 16860 2.396590 TTTCCTCGGCACCTTGTATC 57.603 50.000 0.00 0.00 0.00 2.24
3398 16887 1.065782 GCAAGAGAGGGGAGGAGAAAC 60.066 57.143 0.00 0.00 0.00 2.78
3450 16939 4.226620 TGGAGAAGGTTAGGAATGGGTTAC 59.773 45.833 0.00 0.00 0.00 2.50
3452 16941 3.265489 TGGAGAAGGTTAGGAATGGGTT 58.735 45.455 0.00 0.00 0.00 4.11
3453 16942 2.929301 TGGAGAAGGTTAGGAATGGGT 58.071 47.619 0.00 0.00 0.00 4.51
3475 16964 0.803768 CAGGTCAGGCTTCGTCGATG 60.804 60.000 0.00 0.00 0.00 3.84
3476 16965 0.965866 TCAGGTCAGGCTTCGTCGAT 60.966 55.000 0.00 0.00 0.00 3.59
3480 16969 0.034059 CAACTCAGGTCAGGCTTCGT 59.966 55.000 0.00 0.00 0.00 3.85
3486 16975 1.557269 CCCTCCCAACTCAGGTCAGG 61.557 65.000 0.00 0.00 0.00 3.86
3498 16987 1.897037 TATGCACCTCTCCCCTCCCA 61.897 60.000 0.00 0.00 0.00 4.37
3601 17090 7.609146 ACTTATAATGATGCATATGACCACCAG 59.391 37.037 6.97 0.00 0.00 4.00
3604 17093 9.224267 AGAACTTATAATGATGCATATGACCAC 57.776 33.333 6.97 0.00 0.00 4.16
3619 17108 7.175104 TCTTGGCAACTTGGAGAACTTATAAT 58.825 34.615 0.00 0.00 37.61 1.28
3625 17114 3.297134 TTCTTGGCAACTTGGAGAACT 57.703 42.857 0.00 0.00 37.61 3.01
3628 17117 3.117888 ACTCTTTCTTGGCAACTTGGAGA 60.118 43.478 16.81 2.20 37.61 3.71
3629 17118 3.217626 ACTCTTTCTTGGCAACTTGGAG 58.782 45.455 0.00 5.04 37.61 3.86
3656 17145 9.582648 AAAATACCCTAGTTTCTTACATGTGTT 57.417 29.630 9.11 0.00 0.00 3.32
3662 17151 9.667107 CTCATGAAAATACCCTAGTTTCTTACA 57.333 33.333 0.00 0.00 41.72 2.41
3673 17162 3.738281 CGAGCGACTCATGAAAATACCCT 60.738 47.826 0.00 0.00 0.00 4.34
3674 17163 2.540101 CGAGCGACTCATGAAAATACCC 59.460 50.000 0.00 0.00 0.00 3.69
3695 17184 2.726832 AGAACTCAACTACGGAGCAC 57.273 50.000 0.00 0.00 35.79 4.40
3696 17185 3.069016 TGAAAGAACTCAACTACGGAGCA 59.931 43.478 0.00 0.00 35.79 4.26
3765 17254 7.938140 ATCAAGACGATTTTCTTATTCCCAA 57.062 32.000 0.00 0.00 33.89 4.12
3766 17255 7.226720 GCTATCAAGACGATTTTCTTATTCCCA 59.773 37.037 0.00 0.00 33.89 4.37
3777 17266 8.768955 GTCTAATGATTGCTATCAAGACGATTT 58.231 33.333 19.94 10.17 43.67 2.17
3791 17280 7.917505 CCTTTGTTCTATTGGTCTAATGATTGC 59.082 37.037 0.00 0.00 0.00 3.56
3803 17292 5.163713 GCAGAGCTTACCTTTGTTCTATTGG 60.164 44.000 0.00 0.00 0.00 3.16
3826 17315 1.133790 CCTTGCTTGTGGATTAGCTGC 59.866 52.381 0.00 0.00 38.22 5.25
3867 17356 0.906756 AGCCAGTAGAGCAGGAGCAA 60.907 55.000 0.00 0.00 45.49 3.91
3880 17369 3.969976 TCCTTCATAGATAGCAAGCCAGT 59.030 43.478 0.00 0.00 0.00 4.00
3881 17370 4.314121 GTCCTTCATAGATAGCAAGCCAG 58.686 47.826 0.00 0.00 0.00 4.85
3891 17380 3.452627 ACCAGCTTTCGTCCTTCATAGAT 59.547 43.478 0.00 0.00 0.00 1.98
3934 17423 1.851021 CGGCCTTCATTGCGTTGACA 61.851 55.000 0.00 0.00 0.00 3.58
3974 17463 7.387948 GCCGATGTAATTATCAGGAGTAATGTT 59.612 37.037 0.00 0.00 0.00 2.71
3988 17477 6.041182 TGCTAGAAAGGTAGCCGATGTAATTA 59.959 38.462 0.00 0.00 44.23 1.40
4008 17497 1.536922 CCTGGCTCGTGTACATGCTAG 60.537 57.143 18.03 18.03 34.51 3.42
4048 17537 2.169789 CAAGCAGTCGATCAGCCGG 61.170 63.158 0.00 0.00 0.00 6.13
4060 17549 2.029073 ACGACGGTGGTCAAGCAG 59.971 61.111 0.00 0.00 43.61 4.24
4073 17562 4.990543 TTCAACAGACAATGATCACGAC 57.009 40.909 0.00 0.00 0.00 4.34
4090 17583 2.104967 ACAGGTCGACGGGATATTCAA 58.895 47.619 9.92 0.00 0.00 2.69
4190 17683 3.459378 ATCGCCGCGTAGTACACCG 62.459 63.158 13.39 2.46 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.