Multiple sequence alignment - TraesCS2B01G426200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G426200 chr2B 100.000 8585 0 0 1 8585 612681044 612689628 0.000000e+00 15854.0
1 TraesCS2B01G426200 chr2B 100.000 30 0 0 3275 3304 708185790 708185761 1.000000e-03 56.5
2 TraesCS2B01G426200 chr2D 93.219 6474 294 70 2198 8585 520520548 520526962 0.000000e+00 9389.0
3 TraesCS2B01G426200 chr2D 89.280 1987 132 37 159 2109 520518575 520520516 0.000000e+00 2414.0
4 TraesCS2B01G426200 chr2D 100.000 30 0 0 3275 3304 586695578 586695549 1.000000e-03 56.5
5 TraesCS2B01G426200 chr2A 93.743 4555 190 43 2718 7209 665705450 665709972 0.000000e+00 6745.0
6 TraesCS2B01G426200 chr2A 92.926 1357 50 25 7249 8585 665709979 665711309 0.000000e+00 1932.0
7 TraesCS2B01G426200 chr2A 88.880 1223 66 31 973 2145 665703694 665704896 0.000000e+00 1441.0
8 TraesCS2B01G426200 chr2A 87.937 572 56 6 2166 2730 665704863 665705428 0.000000e+00 662.0
9 TraesCS2B01G426200 chr2A 85.227 440 41 11 444 871 665702892 665703319 1.710000e-116 431.0
10 TraesCS2B01G426200 chr2A 77.812 329 39 17 8110 8418 4115842 4115528 1.150000e-38 172.0
11 TraesCS2B01G426200 chr2A 80.882 204 18 12 1 188 665702677 665702875 3.230000e-29 141.0
12 TraesCS2B01G426200 chr2A 97.619 42 1 0 1566 1607 665704375 665704416 1.200000e-08 73.1
13 TraesCS2B01G426200 chr1B 88.789 669 51 15 2389 3041 31629847 31630507 0.000000e+00 798.0
14 TraesCS2B01G426200 chr1B 83.884 242 25 9 1907 2145 31629505 31629735 1.450000e-52 219.0
15 TraesCS2B01G426200 chr1B 89.542 153 12 3 2166 2318 31629703 31629851 3.160000e-44 191.0
16 TraesCS2B01G426200 chr1B 83.594 128 18 3 7252 7378 400312790 400312915 5.450000e-22 117.0
17 TraesCS2B01G426200 chr1A 76.694 369 50 20 7252 7587 370109095 370109460 1.150000e-38 172.0
18 TraesCS2B01G426200 chr1A 94.286 70 4 0 8516 8585 370110113 370110182 3.280000e-19 108.0
19 TraesCS2B01G426200 chr5D 76.471 408 40 26 8097 8466 292675981 292676370 4.120000e-38 171.0
20 TraesCS2B01G426200 chr3B 74.306 432 61 26 8113 8516 573476084 573475675 4.180000e-28 137.0
21 TraesCS2B01G426200 chr1D 85.156 128 16 3 7252 7378 297537485 297537610 2.520000e-25 128.0
22 TraesCS2B01G426200 chr6B 92.105 76 6 0 8510 8585 708667900 708667975 3.280000e-19 108.0
23 TraesCS2B01G426200 chr6D 90.909 77 7 0 8509 8585 464737135 464737211 4.240000e-18 104.0
24 TraesCS2B01G426200 chr6D 100.000 30 0 0 3275 3304 358227661 358227690 1.000000e-03 56.5
25 TraesCS2B01G426200 chr6A 90.411 73 7 0 8513 8585 611314450 611314522 7.090000e-16 97.1
26 TraesCS2B01G426200 chr6A 95.122 41 1 1 3269 3308 3867689 3867649 7.190000e-06 63.9
27 TraesCS2B01G426200 chr7D 88.889 63 3 3 8097 8155 213041737 213041799 3.320000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G426200 chr2B 612681044 612689628 8584 False 15854.000000 15854 100.0000 1 8585 1 chr2B.!!$F1 8584
1 TraesCS2B01G426200 chr2D 520518575 520526962 8387 False 5901.500000 9389 91.2495 159 8585 2 chr2D.!!$F1 8426
2 TraesCS2B01G426200 chr2A 665702677 665711309 8632 False 1632.157143 6745 89.6020 1 8585 7 chr2A.!!$F1 8584
3 TraesCS2B01G426200 chr1B 31629505 31630507 1002 False 402.666667 798 87.4050 1907 3041 3 chr1B.!!$F2 1134

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
370 404 0.031994 GGTTGTTGGCAAAGCGACAT 59.968 50.0 0.00 0.00 36.22 3.06 F
510 547 0.035152 TTAGGACGTCGAGCTACCCA 60.035 55.0 9.92 0.00 0.00 4.51 F
1444 1804 0.179073 ATCAGAGATTGTTCGGGCCG 60.179 55.0 22.51 22.51 0.00 6.13 F
2583 3003 0.107508 CGGCAGGTCCAATGTGATCT 60.108 55.0 0.00 0.00 34.01 2.75 F
3907 4404 0.827507 AAGATGTGGCCAAAGCGGTT 60.828 50.0 7.24 0.00 41.24 4.44 F
5330 5854 0.036952 AGAGGTGACCGTGCATTCTG 60.037 55.0 0.00 0.00 0.00 3.02 F
5748 6274 0.176680 AAGCGTCAGAATCGATGGCT 59.823 50.0 0.00 0.00 31.34 4.75 F
5750 6276 0.528466 GCGTCAGAATCGATGGCTGA 60.528 55.0 20.98 20.98 36.40 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1922 2310 0.390209 TTACCTGTTTACCGGCGAGC 60.390 55.000 9.30 0.00 0.00 5.03 R
2109 2505 0.613260 TGCTAGCACAAATCTCCCGT 59.387 50.000 14.93 0.00 0.00 5.28 R
2730 3186 0.541998 CCCTTTTCCACCCTCCCAAC 60.542 60.000 0.00 0.00 0.00 3.77 R
3948 4445 0.036388 TTTGGACCTAGCTTCGCCAG 60.036 55.000 0.00 0.00 0.00 4.85 R
5748 6274 0.178921 ACCTCTCTGAACAGCCCTCA 60.179 55.000 0.00 0.00 0.00 3.86 R
6723 7255 0.178944 ATGTGGATGGGCATGGATGG 60.179 55.000 0.00 0.00 0.00 3.51 R
7502 8061 0.325577 TGCTGGACTGCCTGGAGATA 60.326 55.000 0.00 0.00 33.99 1.98 R
7627 8186 1.227438 TTTCCCGATCGCGATTCCC 60.227 57.895 24.55 9.72 40.82 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 6.706270 ACGAAGATTGAGAAAAGCTCTAACAA 59.294 34.615 0.00 0.00 44.27 2.83
39 40 8.225603 AGATTGAGAAAAGCTCTAACAACAAA 57.774 30.769 0.00 0.00 44.27 2.83
42 43 7.566760 TGAGAAAAGCTCTAACAACAAATGA 57.433 32.000 0.00 0.00 44.27 2.57
48 49 6.076981 AGCTCTAACAACAAATGAAAGTGG 57.923 37.500 0.00 0.00 0.00 4.00
52 56 6.039616 TCTAACAACAAATGAAAGTGGCAAC 58.960 36.000 0.00 0.00 0.00 4.17
90 94 3.201290 CCATCATCTACAAGTGGAGCAC 58.799 50.000 0.00 0.00 31.59 4.40
92 96 4.449131 CATCATCTACAAGTGGAGCACAT 58.551 43.478 0.00 0.00 36.74 3.21
113 117 0.624795 AGGTTTCCCTCCCCTCATCC 60.625 60.000 0.00 0.00 35.62 3.51
119 134 1.073474 CCTCCCCTCATCCCCATCA 60.073 63.158 0.00 0.00 0.00 3.07
125 140 0.921896 CCTCATCCCCATCACTTGGT 59.078 55.000 0.00 0.00 44.83 3.67
131 146 4.080356 TCATCCCCATCACTTGGTTTCTAG 60.080 45.833 0.00 0.00 44.83 2.43
141 156 6.880484 TCACTTGGTTTCTAGTGAAGTAACA 58.120 36.000 7.88 0.00 46.86 2.41
144 159 4.624015 TGGTTTCTAGTGAAGTAACACCG 58.376 43.478 0.00 0.00 41.12 4.94
149 164 6.579666 TTCTAGTGAAGTAACACCGTATGT 57.420 37.500 0.00 0.00 46.42 2.29
163 178 2.473868 CCGTATGTTTGCATGACGACAC 60.474 50.000 0.00 0.76 35.83 3.67
168 183 3.838120 TGTTTGCATGACGACACAAAAA 58.162 36.364 0.00 0.00 34.10 1.94
194 209 3.084039 ACCACATGGCATCACTTAACAG 58.916 45.455 0.00 0.00 39.32 3.16
206 221 3.064271 TCACTTAACAGCAACCACGTTTC 59.936 43.478 0.00 0.00 0.00 2.78
236 251 4.321899 GCACAACCAACATCATAACACCAT 60.322 41.667 0.00 0.00 0.00 3.55
238 253 5.048154 CACAACCAACATCATAACACCATCA 60.048 40.000 0.00 0.00 0.00 3.07
249 269 1.865865 ACACCATCAAGACGACACAC 58.134 50.000 0.00 0.00 0.00 3.82
278 298 0.313987 CTCACCGTGCACTGACTACA 59.686 55.000 15.72 0.00 0.00 2.74
287 307 4.376008 CGTGCACTGACTACAACAACATAC 60.376 45.833 16.19 0.00 0.00 2.39
289 309 3.435671 GCACTGACTACAACAACATACCC 59.564 47.826 0.00 0.00 0.00 3.69
321 341 0.400213 TCAACACGAGGATGCCCTTT 59.600 50.000 0.00 0.00 44.53 3.11
322 342 1.202879 TCAACACGAGGATGCCCTTTT 60.203 47.619 0.00 0.00 44.53 2.27
325 345 1.089920 CACGAGGATGCCCTTTTCTG 58.910 55.000 0.00 0.00 44.53 3.02
334 354 2.717639 GCCCTTTTCTGGCTAGATCA 57.282 50.000 0.00 0.00 45.70 2.92
350 370 6.149142 GGCTAGATCATCATTTCCATCAACTC 59.851 42.308 0.00 0.00 0.00 3.01
351 371 6.128607 GCTAGATCATCATTTCCATCAACTCG 60.129 42.308 0.00 0.00 0.00 4.18
352 372 5.061853 AGATCATCATTTCCATCAACTCGG 58.938 41.667 0.00 0.00 0.00 4.63
353 373 4.220693 TCATCATTTCCATCAACTCGGT 57.779 40.909 0.00 0.00 0.00 4.69
354 374 4.588899 TCATCATTTCCATCAACTCGGTT 58.411 39.130 0.00 0.00 0.00 4.44
355 375 4.395854 TCATCATTTCCATCAACTCGGTTG 59.604 41.667 9.65 9.65 43.99 3.77
356 376 3.750371 TCATTTCCATCAACTCGGTTGT 58.250 40.909 13.95 2.83 43.23 3.32
357 377 4.141287 TCATTTCCATCAACTCGGTTGTT 58.859 39.130 13.95 5.84 43.23 2.83
358 378 3.980646 TTTCCATCAACTCGGTTGTTG 57.019 42.857 13.95 14.69 46.09 3.33
360 380 3.773117 CATCAACTCGGTTGTTGGC 57.227 52.632 13.95 0.00 45.15 4.52
361 381 0.950836 CATCAACTCGGTTGTTGGCA 59.049 50.000 13.95 0.00 45.15 4.92
362 382 1.336440 CATCAACTCGGTTGTTGGCAA 59.664 47.619 13.95 0.00 45.15 4.52
370 404 0.031994 GGTTGTTGGCAAAGCGACAT 59.968 50.000 0.00 0.00 36.22 3.06
381 415 5.576384 TGGCAAAGCGACATTGAAAAATATC 59.424 36.000 0.00 0.00 0.00 1.63
409 443 3.595173 CATCACCTGACGACAACCATTA 58.405 45.455 0.00 0.00 0.00 1.90
414 448 4.034394 CACCTGACGACAACCATTATCATG 59.966 45.833 0.00 0.00 0.00 3.07
415 449 4.081142 ACCTGACGACAACCATTATCATGA 60.081 41.667 0.00 0.00 31.07 3.07
430 466 2.229792 TCATGAAGCACCAAGTGAACC 58.770 47.619 0.00 0.00 35.23 3.62
434 470 1.264288 GAAGCACCAAGTGAACCGAAG 59.736 52.381 0.00 0.00 35.23 3.79
469 506 1.003696 AGCTGTAAAGCACCCCTCTTC 59.996 52.381 7.85 0.00 37.25 2.87
471 508 2.553247 GCTGTAAAGCACCCCTCTTCTT 60.553 50.000 0.00 0.00 34.41 2.52
472 509 3.307480 GCTGTAAAGCACCCCTCTTCTTA 60.307 47.826 0.00 0.00 34.41 2.10
473 510 4.626529 GCTGTAAAGCACCCCTCTTCTTAT 60.627 45.833 0.00 0.00 34.41 1.73
474 511 5.099042 TGTAAAGCACCCCTCTTCTTATC 57.901 43.478 0.00 0.00 0.00 1.75
476 513 3.922171 AAGCACCCCTCTTCTTATCAG 57.078 47.619 0.00 0.00 0.00 2.90
477 514 2.839228 AGCACCCCTCTTCTTATCAGT 58.161 47.619 0.00 0.00 0.00 3.41
478 515 2.769095 AGCACCCCTCTTCTTATCAGTC 59.231 50.000 0.00 0.00 0.00 3.51
484 521 1.849219 CTCTTCTTATCAGTCGCACGC 59.151 52.381 0.00 0.00 0.00 5.34
505 542 3.243134 GCTCTTTATTAGGACGTCGAGCT 60.243 47.826 22.44 12.57 39.47 4.09
510 547 0.035152 TTAGGACGTCGAGCTACCCA 60.035 55.000 9.92 0.00 0.00 4.51
559 596 2.663119 GCATTGCGCTTTTAGAAACTGG 59.337 45.455 9.73 0.00 37.77 4.00
561 598 4.614993 GCATTGCGCTTTTAGAAACTGGTA 60.615 41.667 9.73 0.00 37.77 3.25
583 620 5.606348 AGTTTGGTGCCAAAAGTTATCAA 57.394 34.783 16.89 0.00 45.86 2.57
604 641 2.242196 ACCAGTATGTAGGCAAGCCAAT 59.758 45.455 14.40 6.53 38.92 3.16
605 642 3.290710 CCAGTATGTAGGCAAGCCAATT 58.709 45.455 14.40 0.00 38.92 2.32
606 643 3.701040 CCAGTATGTAGGCAAGCCAATTT 59.299 43.478 14.40 0.00 38.92 1.82
678 720 3.786553 ACCTTTTAATTCCCCCACTTCC 58.213 45.455 0.00 0.00 0.00 3.46
709 751 3.757745 AACTTCCGTCACACTTGTTTG 57.242 42.857 0.00 0.00 0.00 2.93
736 778 7.967771 TGTGACATTATGAATTATGTTTGCG 57.032 32.000 0.00 0.00 35.24 4.85
743 785 5.673337 ATGAATTATGTTTGCGCGATAGT 57.327 34.783 12.10 0.00 39.35 2.12
746 788 7.006187 TGAATTATGTTTGCGCGATAGTTAA 57.994 32.000 12.10 0.00 39.35 2.01
782 824 7.765695 AACACAGATGGACTTAACAATCATT 57.234 32.000 0.00 0.00 0.00 2.57
883 989 5.178797 CCAACCTAGTATATAGTGGCATGC 58.821 45.833 9.90 9.90 0.00 4.06
922 1028 7.066404 GTGTCAAGATTTATTCTTCTCTTCCCC 59.934 40.741 0.00 0.00 42.98 4.81
925 1031 8.394040 TCAAGATTTATTCTTCTCTTCCCCTTT 58.606 33.333 0.00 0.00 42.98 3.11
926 1032 9.029368 CAAGATTTATTCTTCTCTTCCCCTTTT 57.971 33.333 0.00 0.00 42.98 2.27
927 1033 8.815565 AGATTTATTCTTCTCTTCCCCTTTTC 57.184 34.615 0.00 0.00 0.00 2.29
928 1034 7.836685 AGATTTATTCTTCTCTTCCCCTTTTCC 59.163 37.037 0.00 0.00 0.00 3.13
930 1036 5.607168 ATTCTTCTCTTCCCCTTTTCCTT 57.393 39.130 0.00 0.00 0.00 3.36
931 1037 4.373156 TCTTCTCTTCCCCTTTTCCTTG 57.627 45.455 0.00 0.00 0.00 3.61
932 1038 3.722101 TCTTCTCTTCCCCTTTTCCTTGT 59.278 43.478 0.00 0.00 0.00 3.16
933 1039 3.790089 TCTCTTCCCCTTTTCCTTGTC 57.210 47.619 0.00 0.00 0.00 3.18
934 1040 3.053077 TCTCTTCCCCTTTTCCTTGTCA 58.947 45.455 0.00 0.00 0.00 3.58
935 1041 3.657727 TCTCTTCCCCTTTTCCTTGTCAT 59.342 43.478 0.00 0.00 0.00 3.06
938 1046 1.357761 TCCCCTTTTCCTTGTCATCCC 59.642 52.381 0.00 0.00 0.00 3.85
951 1059 1.134788 GTCATCCCCTACGTGTTGAGG 60.135 57.143 0.00 0.00 0.00 3.86
967 1075 2.034878 TGAGGTTGATCGAGCAGCTAT 58.965 47.619 17.03 6.49 0.00 2.97
1082 1427 4.384056 GTCATCAGAGAGAGAGAGAGAGG 58.616 52.174 0.00 0.00 0.00 3.69
1091 1436 3.312890 AGAGAGAGAGAGGGAGAGAGAG 58.687 54.545 0.00 0.00 0.00 3.20
1092 1437 3.051803 AGAGAGAGAGAGGGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
1261 1619 4.789012 TCATCATCAGAAAAAGGCAACC 57.211 40.909 0.00 0.00 37.17 3.77
1264 1622 5.070180 TCATCATCAGAAAAAGGCAACCAAA 59.930 36.000 0.00 0.00 37.17 3.28
1279 1638 1.248101 CCAAATTCCCACACGGTCCC 61.248 60.000 0.00 0.00 0.00 4.46
1310 1669 0.470341 GGAAGGGGCTGTGAGTATCC 59.530 60.000 0.00 0.00 0.00 2.59
1418 1778 3.788766 CGGCTGCGAAGAAACGGG 61.789 66.667 0.00 0.00 0.00 5.28
1443 1803 1.672881 CAATCAGAGATTGTTCGGGCC 59.327 52.381 10.72 0.00 0.00 5.80
1444 1804 0.179073 ATCAGAGATTGTTCGGGCCG 60.179 55.000 22.51 22.51 0.00 6.13
1485 1845 1.604185 CCGAGAGATTCTGAATCGCCC 60.604 57.143 24.35 15.62 42.75 6.13
1549 1915 3.403558 GCTCCGCCCTCCTCCTTT 61.404 66.667 0.00 0.00 0.00 3.11
1551 1917 2.687566 TCCGCCCTCCTCCTTTCC 60.688 66.667 0.00 0.00 0.00 3.13
1674 2061 2.342648 GAAACCGAGGAGGCACGT 59.657 61.111 0.00 0.00 46.52 4.49
1687 2074 2.673368 GAGGCACGTCAATAACAAGGAG 59.327 50.000 0.00 0.00 0.00 3.69
1688 2075 2.301870 AGGCACGTCAATAACAAGGAGA 59.698 45.455 0.00 0.00 0.00 3.71
1689 2076 2.673368 GGCACGTCAATAACAAGGAGAG 59.327 50.000 0.00 0.00 0.00 3.20
1690 2077 2.094417 GCACGTCAATAACAAGGAGAGC 59.906 50.000 0.00 0.00 0.00 4.09
1714 2101 0.891373 TTCCTGCTCCGTCAGAAGAG 59.109 55.000 0.00 0.00 36.19 2.85
1744 2131 1.005394 GTTTCCGCCCGTCTTCAGA 60.005 57.895 0.00 0.00 0.00 3.27
1746 2133 1.134907 GTTTCCGCCCGTCTTCAGATA 60.135 52.381 0.00 0.00 0.00 1.98
1788 2175 1.134670 GGGAGGTCGGATTCTGAGTTG 60.135 57.143 0.00 0.00 0.00 3.16
1922 2310 2.069273 GGGTTCTGTCTGTGATCAACG 58.931 52.381 0.00 0.00 0.00 4.10
2028 2416 3.498082 ACGAACACAACTTTCAGTTTGC 58.502 40.909 0.00 0.00 36.03 3.68
2123 2519 6.619801 ATTTATAGAACGGGAGATTTGTGC 57.380 37.500 0.00 0.00 0.00 4.57
2124 2520 3.914426 ATAGAACGGGAGATTTGTGCT 57.086 42.857 0.00 0.00 0.00 4.40
2125 2521 6.474140 TTATAGAACGGGAGATTTGTGCTA 57.526 37.500 0.00 0.00 0.00 3.49
2126 2522 3.252974 AGAACGGGAGATTTGTGCTAG 57.747 47.619 0.00 0.00 0.00 3.42
2127 2523 1.666189 GAACGGGAGATTTGTGCTAGC 59.334 52.381 8.10 8.10 0.00 3.42
2128 2524 0.613260 ACGGGAGATTTGTGCTAGCA 59.387 50.000 14.93 14.93 0.00 3.49
2129 2525 1.293924 CGGGAGATTTGTGCTAGCAG 58.706 55.000 20.03 0.00 0.00 4.24
2130 2526 1.020437 GGGAGATTTGTGCTAGCAGC 58.980 55.000 20.03 13.62 42.82 5.25
2131 2527 0.654683 GGAGATTTGTGCTAGCAGCG 59.345 55.000 20.03 0.00 46.26 5.18
2132 2528 1.363744 GAGATTTGTGCTAGCAGCGT 58.636 50.000 20.03 4.47 46.26 5.07
2133 2529 1.734465 GAGATTTGTGCTAGCAGCGTT 59.266 47.619 20.03 3.54 46.26 4.84
2134 2530 1.734465 AGATTTGTGCTAGCAGCGTTC 59.266 47.619 20.03 13.04 46.26 3.95
2135 2531 1.734465 GATTTGTGCTAGCAGCGTTCT 59.266 47.619 20.03 0.51 46.26 3.01
2136 2532 1.593196 TTTGTGCTAGCAGCGTTCTT 58.407 45.000 20.03 0.00 46.26 2.52
2137 2533 1.593196 TTGTGCTAGCAGCGTTCTTT 58.407 45.000 20.03 0.00 46.26 2.52
2138 2534 0.867746 TGTGCTAGCAGCGTTCTTTG 59.132 50.000 20.03 0.00 46.26 2.77
2139 2535 0.868406 GTGCTAGCAGCGTTCTTTGT 59.132 50.000 20.03 0.00 46.26 2.83
2140 2536 2.066262 GTGCTAGCAGCGTTCTTTGTA 58.934 47.619 20.03 0.00 46.26 2.41
2141 2537 2.673368 GTGCTAGCAGCGTTCTTTGTAT 59.327 45.455 20.03 0.00 46.26 2.29
2142 2538 2.672874 TGCTAGCAGCGTTCTTTGTATG 59.327 45.455 14.93 0.00 46.26 2.39
2143 2539 2.537730 GCTAGCAGCGTTCTTTGTATGC 60.538 50.000 10.63 0.00 0.00 3.14
2144 2540 1.813513 AGCAGCGTTCTTTGTATGCT 58.186 45.000 0.00 0.00 39.09 3.79
2145 2541 2.972625 AGCAGCGTTCTTTGTATGCTA 58.027 42.857 0.00 0.00 41.90 3.49
2146 2542 2.932614 AGCAGCGTTCTTTGTATGCTAG 59.067 45.455 0.00 0.00 41.90 3.42
2147 2543 2.537730 GCAGCGTTCTTTGTATGCTAGC 60.538 50.000 8.10 8.10 36.15 3.42
2148 2544 2.672874 CAGCGTTCTTTGTATGCTAGCA 59.327 45.455 21.85 21.85 36.15 3.49
2149 2545 2.932614 AGCGTTCTTTGTATGCTAGCAG 59.067 45.455 23.89 8.33 36.15 4.24
2150 2546 2.537730 GCGTTCTTTGTATGCTAGCAGC 60.538 50.000 23.89 17.93 42.82 5.25
2151 2547 2.285256 CGTTCTTTGTATGCTAGCAGCG 60.285 50.000 23.89 6.42 46.26 5.18
2152 2548 2.672961 TCTTTGTATGCTAGCAGCGT 57.327 45.000 23.89 9.14 46.26 5.07
2153 2549 2.972625 TCTTTGTATGCTAGCAGCGTT 58.027 42.857 23.89 8.75 46.26 4.84
2154 2550 3.334691 TCTTTGTATGCTAGCAGCGTTT 58.665 40.909 23.89 8.34 46.26 3.60
2155 2551 3.751175 TCTTTGTATGCTAGCAGCGTTTT 59.249 39.130 23.89 7.55 46.26 2.43
2156 2552 4.932799 TCTTTGTATGCTAGCAGCGTTTTA 59.067 37.500 23.89 6.46 46.26 1.52
2157 2553 5.584649 TCTTTGTATGCTAGCAGCGTTTTAT 59.415 36.000 23.89 5.98 46.26 1.40
2158 2554 5.811399 TTGTATGCTAGCAGCGTTTTATT 57.189 34.783 23.89 5.21 46.26 1.40
2159 2555 5.811399 TGTATGCTAGCAGCGTTTTATTT 57.189 34.783 23.89 4.43 46.26 1.40
2160 2556 6.912203 TGTATGCTAGCAGCGTTTTATTTA 57.088 33.333 23.89 3.38 46.26 1.40
2161 2557 7.490962 TGTATGCTAGCAGCGTTTTATTTAT 57.509 32.000 23.89 3.66 46.26 1.40
2162 2558 8.596271 TGTATGCTAGCAGCGTTTTATTTATA 57.404 30.769 23.89 2.62 46.26 0.98
2163 2559 9.214957 TGTATGCTAGCAGCGTTTTATTTATAT 57.785 29.630 23.89 2.51 46.26 0.86
2235 2644 7.396540 AATCCAACATGATAACTGTTCCTTC 57.603 36.000 0.00 0.00 34.69 3.46
2247 2656 1.557832 TGTTCCTTCCGTTATCAGGGG 59.442 52.381 0.00 0.00 0.00 4.79
2252 2661 0.472471 TTCCGTTATCAGGGGATGGC 59.528 55.000 0.00 0.00 34.89 4.40
2253 2662 1.301716 CCGTTATCAGGGGATGGCG 60.302 63.158 0.00 0.00 34.89 5.69
2254 2663 1.301716 CGTTATCAGGGGATGGCGG 60.302 63.158 0.00 0.00 34.89 6.13
2255 2664 1.073199 GTTATCAGGGGATGGCGGG 59.927 63.158 0.00 0.00 34.89 6.13
2308 2718 0.173255 ATTTGCCTTTTCGATGCCCG 59.827 50.000 0.00 0.00 40.25 6.13
2453 2869 4.440214 GCTCCGTGCGTCAAATTG 57.560 55.556 0.00 0.00 0.00 2.32
2478 2894 5.010012 TGCTCCTTTGATTCTTTCAAGTTCC 59.990 40.000 0.00 0.00 44.90 3.62
2503 2919 6.225318 TGTGACACGGTTAAGCTTACTAAAT 58.775 36.000 5.45 0.00 0.00 1.40
2583 3003 0.107508 CGGCAGGTCCAATGTGATCT 60.108 55.000 0.00 0.00 34.01 2.75
2595 3015 5.305128 TCCAATGTGATCTTTGCCTCTTTTT 59.695 36.000 0.00 0.00 0.00 1.94
2653 3076 5.895636 TCTCATTCATTTATTTGGTGCGT 57.104 34.783 0.00 0.00 0.00 5.24
2706 3130 7.201732 CCACCATTCACTAATTGGAACATACTC 60.202 40.741 0.00 0.00 39.30 2.59
2730 3186 5.065914 TGAGAAAATCTGAGTTGTTGGGAG 58.934 41.667 0.00 0.00 0.00 4.30
2866 3329 3.685139 CTCTGAAGAGGGTGCTTACAA 57.315 47.619 0.00 0.00 38.48 2.41
2867 3330 3.594134 CTCTGAAGAGGGTGCTTACAAG 58.406 50.000 0.00 0.00 38.48 3.16
2868 3331 2.972713 TCTGAAGAGGGTGCTTACAAGT 59.027 45.455 0.00 0.00 0.00 3.16
2869 3332 3.391296 TCTGAAGAGGGTGCTTACAAGTT 59.609 43.478 0.00 0.00 0.00 2.66
3220 3683 9.612620 GATGTAAGTTTTGAATCGACTGAAAAT 57.387 29.630 0.00 0.00 0.00 1.82
3264 3731 5.103898 ACATAGGATGTACTCTCTCTGTCCA 60.104 44.000 0.00 0.00 42.78 4.02
3277 3744 4.724399 TCTCTGTCCAAAAATAAGTGCCA 58.276 39.130 0.00 0.00 0.00 4.92
3278 3745 4.518970 TCTCTGTCCAAAAATAAGTGCCAC 59.481 41.667 0.00 0.00 0.00 5.01
3296 3792 3.142951 CCACGACACTTATTTTGGGACA 58.857 45.455 0.00 0.00 0.00 4.02
3577 4074 3.172339 TGGGGCTGAAACAATTTATGCT 58.828 40.909 0.00 0.00 0.00 3.79
3625 4122 1.280421 GAAGAAGAGATGGCCAGTGGT 59.720 52.381 13.05 0.00 0.00 4.16
3769 4266 5.689383 TTTACAGAAGTCACAATGGAAGC 57.311 39.130 0.00 0.00 0.00 3.86
3791 4288 3.614616 CCAAGACAGTAGCGATTCTGTTC 59.385 47.826 14.24 7.84 43.64 3.18
3899 4396 1.279496 AGCACTAGAAGATGTGGCCA 58.721 50.000 0.00 0.00 34.99 5.36
3907 4404 0.827507 AAGATGTGGCCAAAGCGGTT 60.828 50.000 7.24 0.00 41.24 4.44
3934 4431 2.031944 CCATCAATCAGCGAATGCAGAG 60.032 50.000 0.00 0.00 46.23 3.35
3948 4445 2.972625 TGCAGAGTACATAACCAGCAC 58.027 47.619 0.00 0.00 0.00 4.40
3949 4446 2.567169 TGCAGAGTACATAACCAGCACT 59.433 45.455 0.00 0.00 0.00 4.40
4224 4721 6.398918 TCTTGCAAGAGGATAAGTTAGTCAC 58.601 40.000 25.16 0.00 0.00 3.67
4472 4969 6.951971 AGTAGTACTTTCCAGAATGCTGATT 58.048 36.000 0.74 0.00 45.17 2.57
4706 5206 7.448420 TCAAGATGAAGACATTTCTCAGACTT 58.552 34.615 0.00 0.00 36.82 3.01
4729 5229 9.289782 ACTTTACATAAATCAGAATCCATAGGC 57.710 33.333 0.00 0.00 0.00 3.93
4742 5242 9.021807 CAGAATCCATAGGCAGATTAATTTCAT 57.978 33.333 0.00 0.00 32.91 2.57
4743 5243 9.597681 AGAATCCATAGGCAGATTAATTTCATT 57.402 29.630 0.00 0.00 32.91 2.57
4748 5248 7.040478 CCATAGGCAGATTAATTTCATTTCCGA 60.040 37.037 0.00 0.00 0.00 4.55
4841 5341 8.019669 CAGACTCAAGTTCACAAATAATTGAGG 58.980 37.037 14.99 0.00 44.93 3.86
5024 5527 8.382030 TGAAGGTATGTTGCTCATGTATTATG 57.618 34.615 0.00 0.00 37.91 1.90
5039 5542 7.347222 TCATGTATTATGAAGTGTAAGACCCCT 59.653 37.037 0.00 0.00 0.00 4.79
5056 5559 3.009584 ACCCCTTTCTCTTCAGCTTTAGG 59.990 47.826 0.00 0.00 0.00 2.69
5067 5570 6.329496 TCTTCAGCTTTAGGTTTTTGTTGTG 58.671 36.000 0.00 0.00 0.00 3.33
5068 5571 5.652994 TCAGCTTTAGGTTTTTGTTGTGT 57.347 34.783 0.00 0.00 0.00 3.72
5069 5572 6.761099 TCAGCTTTAGGTTTTTGTTGTGTA 57.239 33.333 0.00 0.00 0.00 2.90
5071 5574 7.777095 TCAGCTTTAGGTTTTTGTTGTGTAAT 58.223 30.769 0.00 0.00 0.00 1.89
5072 5575 7.704472 TCAGCTTTAGGTTTTTGTTGTGTAATG 59.296 33.333 0.00 0.00 0.00 1.90
5073 5576 7.491048 CAGCTTTAGGTTTTTGTTGTGTAATGT 59.509 33.333 0.00 0.00 0.00 2.71
5074 5577 8.688151 AGCTTTAGGTTTTTGTTGTGTAATGTA 58.312 29.630 0.00 0.00 0.00 2.29
5075 5578 9.471084 GCTTTAGGTTTTTGTTGTGTAATGTAT 57.529 29.630 0.00 0.00 0.00 2.29
5314 5838 1.942657 CCCATGAATGCGTTACCAGAG 59.057 52.381 0.00 0.00 0.00 3.35
5330 5854 0.036952 AGAGGTGACCGTGCATTCTG 60.037 55.000 0.00 0.00 0.00 3.02
5374 5898 1.086067 ACGATTGCAGTCCATCAGCG 61.086 55.000 3.33 0.00 0.00 5.18
5378 5902 2.110757 TTGCAGTCCATCAGCGGTCA 62.111 55.000 0.00 0.00 0.00 4.02
5411 5935 4.563993 CCAAGCCATCCATGTTGACATTTT 60.564 41.667 0.00 0.00 33.61 1.82
5419 5943 6.647334 TCCATGTTGACATTTTCTTGCTTA 57.353 33.333 0.00 0.00 33.61 3.09
5446 5970 5.122869 CGAGAATGCTGATGAAAAAGAGGAA 59.877 40.000 0.00 0.00 0.00 3.36
5484 6008 1.916181 GGTTCTGGATCCTTCCTTGGA 59.084 52.381 14.23 0.00 43.07 3.53
5494 6018 6.447084 TGGATCCTTCCTTGGAAAATAGTACT 59.553 38.462 14.23 0.00 43.07 2.73
5500 6024 7.125963 CCTTCCTTGGAAAATAGTACTAGTCCT 59.874 40.741 21.72 0.00 0.00 3.85
5622 6148 1.012086 CAGATGAGTTGTCCATGCCG 58.988 55.000 0.00 0.00 0.00 5.69
5743 6269 1.743394 TGCTAGAAGCGTCAGAATCGA 59.257 47.619 1.61 0.00 46.26 3.59
5748 6274 0.176680 AAGCGTCAGAATCGATGGCT 59.823 50.000 0.00 0.00 31.34 4.75
5750 6276 0.528466 GCGTCAGAATCGATGGCTGA 60.528 55.000 20.98 20.98 36.40 4.26
5760 6286 1.300963 GATGGCTGAGGGCTGTTCA 59.699 57.895 0.00 0.00 41.46 3.18
5952 6478 2.029073 AACGTGAGACCAGCACCG 59.971 61.111 0.00 0.00 32.74 4.94
5967 6493 2.231380 ACCGCTGGGGATGGAACTT 61.231 57.895 18.53 0.00 39.97 2.66
5972 6498 2.802719 GCTGGGGATGGAACTTGTTAA 58.197 47.619 0.00 0.00 0.00 2.01
5987 6513 4.141344 ACTTGTTAAAGAGGTGGCCAAGTA 60.141 41.667 7.24 0.00 39.23 2.24
6043 6569 4.574674 AAAGCATTAGATGAGGTGGTGA 57.425 40.909 0.00 0.00 0.00 4.02
6197 6723 7.323420 TGTAGATCTTTGTAGTTGTCCATGAG 58.677 38.462 0.00 0.00 0.00 2.90
6291 6819 8.379457 AGGATTTAATAGATTTAGCGGTGTTC 57.621 34.615 0.00 0.00 0.00 3.18
6318 6849 7.394077 TCTTCTATAGAGATGAGGATTCAGCAG 59.606 40.741 2.02 0.00 42.14 4.24
6365 6896 9.838339 ATGGAAAAGTAAAGTGAGTATGATAGG 57.162 33.333 0.00 0.00 0.00 2.57
6431 6963 2.829120 GGTTGAATCCCATTTTCCGGAA 59.171 45.455 14.35 14.35 0.00 4.30
6514 7046 3.202829 TGTGGTTCCAAACACTAGGAC 57.797 47.619 8.88 0.00 38.39 3.85
6539 7071 6.959639 TGTTTGGTTATGCTTTTCTTCTCT 57.040 33.333 0.00 0.00 0.00 3.10
6561 7093 5.592282 TCTCTTGATGTTGTTGGCTGTAAAA 59.408 36.000 0.00 0.00 0.00 1.52
6568 7100 4.218635 TGTTGTTGGCTGTAAAAGTGTGAA 59.781 37.500 0.00 0.00 0.00 3.18
6578 7110 7.595130 GGCTGTAAAAGTGTGAAAATAGGAAAG 59.405 37.037 0.00 0.00 0.00 2.62
6636 7168 7.108847 ACTGTCTGAAGAATAATTTCCCTCAG 58.891 38.462 8.21 8.21 40.45 3.35
6679 7211 9.429109 TCTCCCTGTTTATGATGTAGTATTACA 57.571 33.333 0.05 0.05 43.55 2.41
6725 7257 2.436109 GCCAACTTGAGAGGCCCA 59.564 61.111 0.00 0.00 42.58 5.36
6726 7258 1.000396 GCCAACTTGAGAGGCCCAT 60.000 57.895 0.00 0.00 42.58 4.00
6784 7316 7.447545 ACAAGTGACAAGTGATACTGTACTCTA 59.552 37.037 0.00 0.00 0.00 2.43
6809 7343 4.936411 GGCATCCATTGTCATGATAGAGAG 59.064 45.833 0.00 0.00 31.07 3.20
6817 7351 5.349061 TGTCATGATAGAGAGTGCAATGT 57.651 39.130 0.00 0.00 0.00 2.71
6820 7354 6.982724 TGTCATGATAGAGAGTGCAATGTAAG 59.017 38.462 0.00 0.00 0.00 2.34
6824 7358 7.117285 TGATAGAGAGTGCAATGTAAGTGAT 57.883 36.000 0.00 0.00 30.28 3.06
6852 7391 2.043664 TGGGAATGAATGTAGCCCCAAA 59.956 45.455 0.00 0.00 40.56 3.28
6856 7395 4.892934 GGAATGAATGTAGCCCCAAACATA 59.107 41.667 0.00 0.00 35.30 2.29
6859 7398 3.287222 GAATGTAGCCCCAAACATAGCA 58.713 45.455 0.00 0.00 35.30 3.49
6865 7404 1.207811 GCCCCAAACATAGCAATGCTT 59.792 47.619 14.85 0.00 40.44 3.91
6907 7449 4.321718 TCATGCTGCTATCTTCCATTAGC 58.678 43.478 0.00 0.00 40.97 3.09
6951 7496 8.654485 ATGGCATAATGTACATATTGTTGGAT 57.346 30.769 9.21 0.00 0.00 3.41
6967 7512 2.775418 TGGATGGATGTATGGACCAGT 58.225 47.619 0.00 0.00 37.12 4.00
6973 7518 6.777580 GGATGGATGTATGGACCAGTATTTTT 59.222 38.462 0.00 0.00 37.12 1.94
7160 7716 3.755378 AGCACAAGAACAGATTCATCACC 59.245 43.478 0.00 0.00 37.29 4.02
7190 7748 6.839124 ATTTCACAATTCAAGCCTGTGATA 57.161 33.333 5.07 1.66 46.45 2.15
7191 7749 5.885230 TTCACAATTCAAGCCTGTGATAG 57.115 39.130 5.07 0.00 46.45 2.08
7202 7760 5.184892 AGCCTGTGATAGGATTGAAAACT 57.815 39.130 0.00 0.00 44.62 2.66
7204 7762 6.721318 AGCCTGTGATAGGATTGAAAACTTA 58.279 36.000 0.00 0.00 44.62 2.24
7205 7763 6.825721 AGCCTGTGATAGGATTGAAAACTTAG 59.174 38.462 0.00 0.00 44.62 2.18
7206 7764 8.068943 AGCCTGTGATAGGATTGAAAACTTAGG 61.069 40.741 0.00 0.00 44.62 2.69
7208 7766 7.921786 TGTGATAGGATTGAAAACTTAGGTG 57.078 36.000 0.00 0.00 0.00 4.00
7210 7768 6.884836 GTGATAGGATTGAAAACTTAGGTGGT 59.115 38.462 0.00 0.00 0.00 4.16
7219 7778 1.318576 ACTTAGGTGGTTGCAGTTGC 58.681 50.000 0.00 0.00 42.50 4.17
7502 8061 4.194720 GCCTCGTGCTCCGACGAT 62.195 66.667 0.00 0.00 46.72 3.73
7681 8240 0.322546 AGTTTCATGGCGGGAGGTTC 60.323 55.000 0.00 0.00 0.00 3.62
7695 8254 3.706373 GTTCGAGGAGGCTGCCCA 61.706 66.667 16.57 0.00 0.00 5.36
7696 8255 2.927856 TTCGAGGAGGCTGCCCAA 60.928 61.111 16.57 0.00 0.00 4.12
7697 8256 3.254024 TTCGAGGAGGCTGCCCAAC 62.254 63.158 16.57 5.87 0.00 3.77
7698 8257 4.785453 CGAGGAGGCTGCCCAACC 62.785 72.222 16.57 16.24 0.00 3.77
8024 8583 2.971261 CGCGCATCATCAATCAAATCAG 59.029 45.455 8.75 0.00 0.00 2.90
8150 8711 1.175983 AGATGTCGGATCTCGGCCTC 61.176 60.000 0.00 5.78 43.91 4.70
8184 8745 4.201980 CCTGACACAACCAGAATGCATATG 60.202 45.833 0.00 1.82 33.65 1.78
8201 8762 2.642139 ATGTTTCAGATGCTTTGCCG 57.358 45.000 0.00 0.00 0.00 5.69
8212 8773 1.315257 GCTTTGCCGGTGACATGGAT 61.315 55.000 1.90 0.00 0.00 3.41
8213 8774 0.734889 CTTTGCCGGTGACATGGATC 59.265 55.000 1.90 0.00 0.00 3.36
8214 8775 0.037447 TTTGCCGGTGACATGGATCA 59.963 50.000 1.90 0.00 0.00 2.92
8215 8776 0.255604 TTGCCGGTGACATGGATCAT 59.744 50.000 1.90 0.00 0.00 2.45
8216 8777 0.464193 TGCCGGTGACATGGATCATG 60.464 55.000 1.90 6.37 46.18 3.07
8217 8778 1.168407 GCCGGTGACATGGATCATGG 61.168 60.000 1.90 0.82 45.16 3.66
8218 8779 0.469494 CCGGTGACATGGATCATGGA 59.531 55.000 11.85 0.00 45.16 3.41
8224 8785 3.018856 TGACATGGATCATGGAAGTTGC 58.981 45.455 11.85 0.00 45.16 4.17
8227 8788 4.795469 ACATGGATCATGGAAGTTGCATA 58.205 39.130 9.77 0.00 45.16 3.14
8231 8792 6.795144 TGGATCATGGAAGTTGCATATTTT 57.205 33.333 9.77 0.00 0.00 1.82
8232 8793 6.808829 TGGATCATGGAAGTTGCATATTTTC 58.191 36.000 9.77 4.86 0.00 2.29
8242 8803 3.182341 TGCATATTTTCAAGCCATGGC 57.818 42.857 30.12 30.12 42.33 4.40
8258 8819 1.164411 TGGCGCTGATGTTTCGATTT 58.836 45.000 7.64 0.00 0.00 2.17
8261 8822 2.159517 GGCGCTGATGTTTCGATTTCTT 60.160 45.455 7.64 0.00 0.00 2.52
8384 8945 1.122019 ACTTCTTCTCCACCGGCAGT 61.122 55.000 0.00 0.00 0.00 4.40
8417 8978 2.966309 GCAGCTCCCGAAAACGGTG 61.966 63.158 7.83 1.01 0.00 4.94
8422 8983 3.361977 CCCGAAAACGGTGGCTGG 61.362 66.667 7.83 0.00 0.00 4.85
8446 9007 0.392193 AGAGGAAGCAGCGGATGTTG 60.392 55.000 0.00 0.00 0.00 3.33
8468 9037 2.928416 GGGGACGTCCTCTGTTTTG 58.072 57.895 32.52 0.00 32.35 2.44
8470 9039 1.345415 GGGGACGTCCTCTGTTTTGTA 59.655 52.381 32.52 0.00 32.35 2.41
8471 9040 2.027469 GGGGACGTCCTCTGTTTTGTAT 60.027 50.000 32.52 0.00 32.35 2.29
8472 9041 3.259902 GGGACGTCCTCTGTTTTGTATC 58.740 50.000 32.52 8.65 35.95 2.24
8473 9042 2.921754 GGACGTCCTCTGTTTTGTATCG 59.078 50.000 27.64 0.00 0.00 2.92
8474 9043 2.921754 GACGTCCTCTGTTTTGTATCGG 59.078 50.000 3.51 0.00 0.00 4.18
8475 9044 2.298163 ACGTCCTCTGTTTTGTATCGGT 59.702 45.455 0.00 0.00 0.00 4.69
8476 9045 3.507233 ACGTCCTCTGTTTTGTATCGGTA 59.493 43.478 0.00 0.00 0.00 4.02
8479 9048 4.329256 GTCCTCTGTTTTGTATCGGTAAGC 59.671 45.833 0.00 0.00 0.00 3.09
8480 9049 4.222145 TCCTCTGTTTTGTATCGGTAAGCT 59.778 41.667 0.00 0.00 0.00 3.74
8481 9050 4.567159 CCTCTGTTTTGTATCGGTAAGCTC 59.433 45.833 0.00 0.00 0.00 4.09
8482 9051 5.401531 TCTGTTTTGTATCGGTAAGCTCT 57.598 39.130 0.00 0.00 0.00 4.09
8483 9052 5.790593 TCTGTTTTGTATCGGTAAGCTCTT 58.209 37.500 0.00 0.00 0.00 2.85
8505 9083 2.344500 CAAGGACGGGCGTGGTTA 59.656 61.111 0.00 0.00 0.00 2.85
8534 9112 0.249120 CGTAGAGGTTGGTGATGGCA 59.751 55.000 0.00 0.00 0.00 4.92
8546 9124 0.468585 TGATGGCATTGGAGATGGCC 60.469 55.000 0.00 0.00 46.58 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 4.575645 CCATTTGTTGCCACTTTCATTTGT 59.424 37.500 0.00 0.00 0.00 2.83
39 40 5.543507 TTACCATTTGTTGCCACTTTCAT 57.456 34.783 0.00 0.00 0.00 2.57
42 43 8.738645 TTTTATTTACCATTTGTTGCCACTTT 57.261 26.923 0.00 0.00 0.00 2.66
60 64 9.308000 TCCACTTGTAGATGATGGTTTTTATTT 57.692 29.630 0.00 0.00 0.00 1.40
68 72 2.840038 TGCTCCACTTGTAGATGATGGT 59.160 45.455 0.00 0.00 0.00 3.55
82 86 1.168714 GGAAACCTCATGTGCTCCAC 58.831 55.000 0.00 0.00 32.41 4.02
83 87 3.650647 GGAAACCTCATGTGCTCCA 57.349 52.632 0.00 0.00 32.41 3.86
119 134 6.053650 GGTGTTACTTCACTAGAAACCAAGT 58.946 40.000 0.00 0.00 38.28 3.16
125 140 6.985117 ACATACGGTGTTACTTCACTAGAAA 58.015 36.000 0.00 0.00 38.01 2.52
141 156 1.730064 GTCGTCATGCAAACATACGGT 59.270 47.619 0.00 0.00 35.67 4.83
144 159 3.804518 TGTGTCGTCATGCAAACATAC 57.195 42.857 0.00 0.00 33.67 2.39
168 183 2.880443 AGTGATGCCATGTGGTCTTTT 58.120 42.857 0.35 0.00 37.57 2.27
181 196 2.665519 CGTGGTTGCTGTTAAGTGATGC 60.666 50.000 0.00 0.00 0.00 3.91
206 221 1.732259 GATGTTGGTTGTGCCTCGTAG 59.268 52.381 0.00 0.00 38.35 3.51
214 229 4.844998 TGGTGTTATGATGTTGGTTGTG 57.155 40.909 0.00 0.00 0.00 3.33
215 230 5.076182 TGATGGTGTTATGATGTTGGTTGT 58.924 37.500 0.00 0.00 0.00 3.32
236 251 2.313317 ACTAAGGGTGTGTCGTCTTGA 58.687 47.619 0.00 0.00 0.00 3.02
238 253 2.036862 GGAACTAAGGGTGTGTCGTCTT 59.963 50.000 0.00 0.00 0.00 3.01
249 269 0.391263 GCACGGTGAGGAACTAAGGG 60.391 60.000 13.29 0.00 41.55 3.95
278 298 5.128663 AGCTTTGTTCTTTGGGTATGTTGTT 59.871 36.000 0.00 0.00 0.00 2.83
287 307 3.447742 GTGTTGAGCTTTGTTCTTTGGG 58.552 45.455 0.00 0.00 0.00 4.12
289 309 4.014847 TCGTGTTGAGCTTTGTTCTTTG 57.985 40.909 0.00 0.00 0.00 2.77
321 341 5.635278 TGGAAATGATGATCTAGCCAGAA 57.365 39.130 0.00 0.00 33.50 3.02
322 342 5.308759 TGATGGAAATGATGATCTAGCCAGA 59.691 40.000 0.00 0.00 34.56 3.86
325 345 6.002704 AGTTGATGGAAATGATGATCTAGCC 58.997 40.000 0.00 0.00 0.00 3.93
328 348 6.183361 ACCGAGTTGATGGAAATGATGATCTA 60.183 38.462 0.00 0.00 0.00 1.98
329 349 5.061853 CCGAGTTGATGGAAATGATGATCT 58.938 41.667 0.00 0.00 0.00 2.75
333 353 4.156556 ACAACCGAGTTGATGGAAATGATG 59.843 41.667 19.38 0.00 45.28 3.07
334 354 4.335416 ACAACCGAGTTGATGGAAATGAT 58.665 39.130 19.38 0.00 45.28 2.45
350 370 1.657181 GTCGCTTTGCCAACAACCG 60.657 57.895 0.00 0.00 34.87 4.44
351 371 0.031994 ATGTCGCTTTGCCAACAACC 59.968 50.000 0.00 0.00 34.87 3.77
352 372 1.522258 CAATGTCGCTTTGCCAACAAC 59.478 47.619 0.00 0.00 34.87 3.32
353 373 1.406898 TCAATGTCGCTTTGCCAACAA 59.593 42.857 0.00 0.00 0.00 2.83
354 374 1.028130 TCAATGTCGCTTTGCCAACA 58.972 45.000 0.00 0.00 0.00 3.33
355 375 2.132740 TTCAATGTCGCTTTGCCAAC 57.867 45.000 0.00 0.00 0.00 3.77
356 376 2.879002 TTTCAATGTCGCTTTGCCAA 57.121 40.000 0.00 0.00 0.00 4.52
357 377 2.879002 TTTTCAATGTCGCTTTGCCA 57.121 40.000 0.00 0.00 0.00 4.92
358 378 5.576384 TGATATTTTTCAATGTCGCTTTGCC 59.424 36.000 0.00 0.00 34.10 4.52
359 379 6.089283 TGTGATATTTTTCAATGTCGCTTTGC 59.911 34.615 6.75 0.00 40.14 3.68
360 380 7.565450 TGTGATATTTTTCAATGTCGCTTTG 57.435 32.000 6.75 0.99 40.14 2.77
361 381 7.329226 CCTTGTGATATTTTTCAATGTCGCTTT 59.671 33.333 6.75 0.00 40.14 3.51
362 382 6.808212 CCTTGTGATATTTTTCAATGTCGCTT 59.192 34.615 6.75 0.00 40.14 4.68
370 404 6.397272 GGTGATGCCTTGTGATATTTTTCAA 58.603 36.000 0.00 0.00 0.00 2.69
409 443 2.821969 GGTTCACTTGGTGCTTCATGAT 59.178 45.455 0.00 0.00 32.98 2.45
414 448 1.264288 CTTCGGTTCACTTGGTGCTTC 59.736 52.381 0.00 0.00 32.98 3.86
415 449 1.134220 TCTTCGGTTCACTTGGTGCTT 60.134 47.619 0.00 0.00 32.98 3.91
469 506 1.914634 AAGAGCGTGCGACTGATAAG 58.085 50.000 0.00 0.00 0.00 1.73
471 508 3.710326 ATAAAGAGCGTGCGACTGATA 57.290 42.857 0.00 0.00 0.00 2.15
472 509 2.586258 ATAAAGAGCGTGCGACTGAT 57.414 45.000 0.00 0.00 0.00 2.90
473 510 2.363788 AATAAAGAGCGTGCGACTGA 57.636 45.000 0.00 0.00 0.00 3.41
474 511 2.535984 CCTAATAAAGAGCGTGCGACTG 59.464 50.000 0.00 0.00 0.00 3.51
476 513 2.534757 GTCCTAATAAAGAGCGTGCGAC 59.465 50.000 0.00 0.00 0.00 5.19
477 514 2.793585 CGTCCTAATAAAGAGCGTGCGA 60.794 50.000 0.00 0.00 0.00 5.10
478 515 1.517276 CGTCCTAATAAAGAGCGTGCG 59.483 52.381 0.00 0.00 0.00 5.34
484 521 4.555348 AGCTCGACGTCCTAATAAAGAG 57.445 45.455 10.58 9.05 0.00 2.85
505 542 4.919774 TTCTAAACATGAAGCCTGGGTA 57.080 40.909 0.00 0.00 0.00 3.69
510 547 6.715347 AAACACTTTCTAAACATGAAGCCT 57.285 33.333 0.00 0.00 0.00 4.58
559 596 6.079424 TGATAACTTTTGGCACCAAACTAC 57.921 37.500 14.31 4.69 44.39 2.73
561 598 5.356426 GTTGATAACTTTTGGCACCAAACT 58.644 37.500 14.31 5.30 44.39 2.66
583 620 1.285280 TGGCTTGCCTACATACTGGT 58.715 50.000 13.18 0.00 0.00 4.00
606 643 6.603940 AGCTAACCAATTGGCAGATAAAAA 57.396 33.333 24.79 0.00 44.42 1.94
678 720 1.627864 ACGGAAGTTTCCCCAAATGG 58.372 50.000 5.36 0.00 46.40 3.16
694 736 1.946768 ACATCCAAACAAGTGTGACGG 59.053 47.619 0.00 0.00 0.00 4.79
695 737 2.611751 TCACATCCAAACAAGTGTGACG 59.388 45.455 3.18 0.00 44.14 4.35
709 751 8.971321 GCAAACATAATTCATAATGTCACATCC 58.029 33.333 0.00 0.00 0.00 3.51
728 770 5.734855 AAGATTAACTATCGCGCAAACAT 57.265 34.783 8.75 0.00 38.36 2.71
729 771 6.838198 ATAAGATTAACTATCGCGCAAACA 57.162 33.333 8.75 0.00 38.36 2.83
883 989 2.567169 TCTTGACACATACACCCCTGAG 59.433 50.000 0.00 0.00 0.00 3.35
918 1024 1.357761 GGGATGACAAGGAAAAGGGGA 59.642 52.381 0.00 0.00 0.00 4.81
922 1028 3.270877 CGTAGGGGATGACAAGGAAAAG 58.729 50.000 0.00 0.00 0.00 2.27
925 1031 1.553248 CACGTAGGGGATGACAAGGAA 59.447 52.381 0.00 0.00 0.00 3.36
926 1032 1.191535 CACGTAGGGGATGACAAGGA 58.808 55.000 0.00 0.00 0.00 3.36
927 1033 0.902531 ACACGTAGGGGATGACAAGG 59.097 55.000 0.00 0.00 0.00 3.61
928 1034 2.028476 TCAACACGTAGGGGATGACAAG 60.028 50.000 0.00 0.00 0.00 3.16
930 1036 1.548719 CTCAACACGTAGGGGATGACA 59.451 52.381 0.00 0.00 0.00 3.58
931 1037 1.134788 CCTCAACACGTAGGGGATGAC 60.135 57.143 0.00 0.00 0.00 3.06
932 1038 1.191535 CCTCAACACGTAGGGGATGA 58.808 55.000 0.00 0.00 0.00 2.92
933 1039 0.902531 ACCTCAACACGTAGGGGATG 59.097 55.000 7.02 0.00 37.18 3.51
934 1040 1.278127 CAACCTCAACACGTAGGGGAT 59.722 52.381 7.02 0.00 37.18 3.85
935 1041 0.682852 CAACCTCAACACGTAGGGGA 59.317 55.000 7.02 0.00 37.18 4.81
938 1046 2.094906 TCGATCAACCTCAACACGTAGG 60.095 50.000 0.36 0.36 38.93 3.18
951 1059 2.217393 CGTCAATAGCTGCTCGATCAAC 59.783 50.000 4.91 0.00 0.00 3.18
967 1075 3.872771 GTGTCCCTCTTTTTGTACGTCAA 59.127 43.478 0.00 0.00 0.00 3.18
1029 1374 0.106669 AGCGGATTAAAAGAGGGGGC 60.107 55.000 0.00 0.00 0.00 5.80
1082 1427 2.452600 ACCACCATCTCTCTCTCTCC 57.547 55.000 0.00 0.00 0.00 3.71
1091 1436 1.686052 CTGCTCTCCTACCACCATCTC 59.314 57.143 0.00 0.00 0.00 2.75
1092 1437 1.289231 TCTGCTCTCCTACCACCATCT 59.711 52.381 0.00 0.00 0.00 2.90
1261 1619 1.582610 CGGGACCGTGTGGGAATTTG 61.583 60.000 1.86 0.00 40.75 2.32
1279 1638 1.946283 GCCCCTTCCTTCTTCTTCACG 60.946 57.143 0.00 0.00 0.00 4.35
1288 1647 1.276622 TACTCACAGCCCCTTCCTTC 58.723 55.000 0.00 0.00 0.00 3.46
1310 1669 0.525761 AACCCAAATGCGGATGAACG 59.474 50.000 0.00 0.00 0.00 3.95
1402 1761 3.431725 CCCCGTTTCTTCGCAGCC 61.432 66.667 0.00 0.00 0.00 4.85
1408 1767 2.945668 CTGATTGATCCCCCGTTTCTTC 59.054 50.000 0.00 0.00 0.00 2.87
1418 1778 3.812053 CCGAACAATCTCTGATTGATCCC 59.188 47.826 22.22 9.91 33.51 3.85
1443 1803 2.900337 GAAATACCCCAGCGCCCG 60.900 66.667 2.29 0.00 0.00 6.13
1444 1804 2.518587 GGAAATACCCCAGCGCCC 60.519 66.667 2.29 0.00 0.00 6.13
1451 1811 1.148498 CTCGGGCAGGAAATACCCC 59.852 63.158 0.00 0.00 40.86 4.95
1456 1816 2.122768 AGAATCTCTCGGGCAGGAAAT 58.877 47.619 0.00 0.00 0.00 2.17
1466 1826 1.777101 GGGCGATTCAGAATCTCTCG 58.223 55.000 19.05 9.99 35.73 4.04
1468 1828 1.339610 CTCGGGCGATTCAGAATCTCT 59.660 52.381 19.05 0.00 35.73 3.10
1485 1845 1.984570 TCTCAGTCCTTGGGCCTCG 60.985 63.158 4.53 0.00 0.00 4.63
1492 1852 1.216710 GGCGGAGTCTCAGTCCTTG 59.783 63.158 1.47 0.00 35.52 3.61
1549 1915 1.103803 GGATCTACACACGCAGAGGA 58.896 55.000 0.00 0.00 0.00 3.71
1551 1917 2.480416 GGAAGGATCTACACACGCAGAG 60.480 54.545 0.00 0.00 0.00 3.35
1599 1965 1.472878 TCCACGTCCAGAATCGAGAAG 59.527 52.381 0.00 0.00 0.00 2.85
1674 2061 1.906574 ACCCGCTCTCCTTGTTATTGA 59.093 47.619 0.00 0.00 0.00 2.57
1687 2074 2.436824 GGAGCAGGAAACCCGCTC 60.437 66.667 15.18 15.18 43.27 5.03
1688 2075 4.394712 CGGAGCAGGAAACCCGCT 62.395 66.667 0.00 0.00 36.68 5.52
1689 2076 4.699522 ACGGAGCAGGAAACCCGC 62.700 66.667 0.00 0.00 45.29 6.13
1690 2077 2.434359 GACGGAGCAGGAAACCCG 60.434 66.667 0.00 0.00 46.65 5.28
1714 2101 1.469767 GGCGGAAACAGATTGGAATGC 60.470 52.381 0.00 0.00 0.00 3.56
1744 2131 4.367450 GCTCTCAACGATGAAGAAGCTAT 58.633 43.478 13.63 0.00 34.91 2.97
1746 2133 2.615869 GCTCTCAACGATGAAGAAGCT 58.384 47.619 13.63 0.00 34.91 3.74
1788 2175 3.126831 CTCGGCACCAATATTCAGAGAC 58.873 50.000 0.00 0.00 0.00 3.36
1909 2297 1.687494 GGCGAGCGTTGATCACAGAC 61.687 60.000 0.00 0.00 0.00 3.51
1910 2298 1.446099 GGCGAGCGTTGATCACAGA 60.446 57.895 0.00 0.00 0.00 3.41
1922 2310 0.390209 TTACCTGTTTACCGGCGAGC 60.390 55.000 9.30 0.00 0.00 5.03
2028 2416 1.154016 CACCGACGGAGCACTACAG 60.154 63.158 23.38 0.00 0.00 2.74
2109 2505 0.613260 TGCTAGCACAAATCTCCCGT 59.387 50.000 14.93 0.00 0.00 5.28
2110 2506 1.293924 CTGCTAGCACAAATCTCCCG 58.706 55.000 14.93 0.00 0.00 5.14
2111 2507 1.020437 GCTGCTAGCACAAATCTCCC 58.980 55.000 14.93 0.00 41.89 4.30
2113 2509 1.363744 ACGCTGCTAGCACAAATCTC 58.636 50.000 14.93 0.00 42.58 2.75
2115 2511 1.734465 AGAACGCTGCTAGCACAAATC 59.266 47.619 14.93 10.24 42.58 2.17
2116 2512 1.813513 AGAACGCTGCTAGCACAAAT 58.186 45.000 14.93 0.14 42.58 2.32
2117 2513 1.593196 AAGAACGCTGCTAGCACAAA 58.407 45.000 14.93 0.00 42.58 2.83
2118 2514 1.264020 CAAAGAACGCTGCTAGCACAA 59.736 47.619 14.93 0.00 42.58 3.33
2119 2515 0.867746 CAAAGAACGCTGCTAGCACA 59.132 50.000 14.93 0.00 42.58 4.57
2120 2516 0.868406 ACAAAGAACGCTGCTAGCAC 59.132 50.000 14.93 10.14 42.58 4.40
2121 2517 2.448926 TACAAAGAACGCTGCTAGCA 57.551 45.000 18.22 18.22 42.58 3.49
2122 2518 2.537730 GCATACAAAGAACGCTGCTAGC 60.538 50.000 8.10 8.10 38.02 3.42
2123 2519 2.932614 AGCATACAAAGAACGCTGCTAG 59.067 45.455 0.00 0.00 38.13 3.42
2124 2520 2.972625 AGCATACAAAGAACGCTGCTA 58.027 42.857 0.00 0.00 38.13 3.49
2125 2521 1.813513 AGCATACAAAGAACGCTGCT 58.186 45.000 0.00 0.00 35.26 4.24
2126 2522 2.537730 GCTAGCATACAAAGAACGCTGC 60.538 50.000 10.63 0.00 34.18 5.25
2127 2523 2.672874 TGCTAGCATACAAAGAACGCTG 59.327 45.455 14.93 0.00 34.18 5.18
2128 2524 2.932614 CTGCTAGCATACAAAGAACGCT 59.067 45.455 19.72 0.00 36.72 5.07
2129 2525 2.537730 GCTGCTAGCATACAAAGAACGC 60.538 50.000 19.72 10.19 41.89 4.84
2130 2526 2.285256 CGCTGCTAGCATACAAAGAACG 60.285 50.000 19.72 3.24 42.58 3.95
2131 2527 2.673368 ACGCTGCTAGCATACAAAGAAC 59.327 45.455 19.72 0.00 42.58 3.01
2132 2528 2.972625 ACGCTGCTAGCATACAAAGAA 58.027 42.857 19.72 0.00 42.58 2.52
2133 2529 2.672961 ACGCTGCTAGCATACAAAGA 57.327 45.000 19.72 0.00 42.58 2.52
2134 2530 3.747099 AAACGCTGCTAGCATACAAAG 57.253 42.857 19.72 6.44 42.58 2.77
2135 2531 5.811399 ATAAAACGCTGCTAGCATACAAA 57.189 34.783 19.72 1.33 42.58 2.83
2136 2532 5.811399 AATAAAACGCTGCTAGCATACAA 57.189 34.783 19.72 0.79 42.58 2.41
2137 2533 5.811399 AAATAAAACGCTGCTAGCATACA 57.189 34.783 19.72 0.00 42.58 2.29
2145 2541 9.607285 CCGAAATAATATAAATAAAACGCTGCT 57.393 29.630 0.00 0.00 0.00 4.24
2146 2542 9.389570 ACCGAAATAATATAAATAAAACGCTGC 57.610 29.630 0.00 0.00 0.00 5.25
2156 2552 9.155975 CTGCTAGCTGACCGAAATAATATAAAT 57.844 33.333 17.23 0.00 0.00 1.40
2157 2553 7.117812 GCTGCTAGCTGACCGAAATAATATAAA 59.882 37.037 24.19 0.00 38.45 1.40
2158 2554 6.590292 GCTGCTAGCTGACCGAAATAATATAA 59.410 38.462 24.19 0.00 38.45 0.98
2159 2555 6.100004 GCTGCTAGCTGACCGAAATAATATA 58.900 40.000 24.19 0.00 38.45 0.86
2160 2556 4.932200 GCTGCTAGCTGACCGAAATAATAT 59.068 41.667 24.19 0.00 38.45 1.28
2161 2557 4.307432 GCTGCTAGCTGACCGAAATAATA 58.693 43.478 24.19 0.00 38.45 0.98
2162 2558 3.134458 GCTGCTAGCTGACCGAAATAAT 58.866 45.455 24.19 0.00 38.45 1.28
2163 2559 2.550978 GCTGCTAGCTGACCGAAATAA 58.449 47.619 24.19 0.00 38.45 1.40
2164 2560 1.536072 CGCTGCTAGCTGACCGAAATA 60.536 52.381 24.19 0.00 39.60 1.40
2235 2644 1.301716 CGCCATCCCCTGATAACGG 60.302 63.158 0.00 0.00 0.00 4.44
2308 2718 2.483889 CCGAGGAGGCAGAAGTATTTCC 60.484 54.545 0.00 0.00 33.64 3.13
2478 2894 3.650139 AGTAAGCTTAACCGTGTCACAG 58.350 45.455 7.99 0.00 0.00 3.66
2520 2940 4.638304 GTGGTTAGAGTTACAGGCTTTCA 58.362 43.478 0.00 0.00 0.00 2.69
2583 3003 6.916360 AAGACCATATCAAAAAGAGGCAAA 57.084 33.333 0.00 0.00 0.00 3.68
2595 3015 5.640147 ACCCAAAAGACAAAGACCATATCA 58.360 37.500 0.00 0.00 0.00 2.15
2706 3130 5.065914 TCCCAACAACTCAGATTTTCTCAG 58.934 41.667 0.00 0.00 0.00 3.35
2730 3186 0.541998 CCCTTTTCCACCCTCCCAAC 60.542 60.000 0.00 0.00 0.00 3.77
2863 3326 6.238538 CCAAACGGTGTTATCTTGTAACTTGT 60.239 38.462 0.00 0.00 0.00 3.16
2864 3327 6.140110 CCAAACGGTGTTATCTTGTAACTTG 58.860 40.000 0.00 0.00 0.00 3.16
2865 3328 5.278120 GCCAAACGGTGTTATCTTGTAACTT 60.278 40.000 0.00 0.00 0.00 2.66
2866 3329 4.214758 GCCAAACGGTGTTATCTTGTAACT 59.785 41.667 0.00 0.00 0.00 2.24
2867 3330 4.469552 GCCAAACGGTGTTATCTTGTAAC 58.530 43.478 0.00 0.00 0.00 2.50
2868 3331 3.502979 GGCCAAACGGTGTTATCTTGTAA 59.497 43.478 0.00 0.00 0.00 2.41
2869 3332 3.075884 GGCCAAACGGTGTTATCTTGTA 58.924 45.455 0.00 0.00 0.00 2.41
3184 3647 3.328382 AAACTTACATCTGCAGCCGTA 57.672 42.857 9.47 9.84 0.00 4.02
3248 3715 7.872993 CACTTATTTTTGGACAGAGAGAGTACA 59.127 37.037 0.00 0.00 0.00 2.90
3277 3744 4.315803 CTCTGTCCCAAAATAAGTGTCGT 58.684 43.478 0.00 0.00 0.00 4.34
3278 3745 3.684788 CCTCTGTCCCAAAATAAGTGTCG 59.315 47.826 0.00 0.00 0.00 4.35
3296 3792 2.014068 GCGCTATTTTGTGCTCCCTCT 61.014 52.381 0.00 0.00 40.01 3.69
3625 4122 1.953686 GTTTGCTTCAAGGGCTGTGTA 59.046 47.619 0.00 0.00 0.00 2.90
3769 4266 3.238108 ACAGAATCGCTACTGTCTTGG 57.762 47.619 0.00 0.00 42.61 3.61
3791 4288 7.985476 ACTGAATAAGAAATGTTACCGGATTG 58.015 34.615 9.46 0.00 0.00 2.67
3899 4396 4.887071 TGATTGATGGCTTATAACCGCTTT 59.113 37.500 0.00 0.00 0.00 3.51
3907 4404 4.154737 GCATTCGCTGATTGATGGCTTATA 59.845 41.667 5.15 0.00 34.30 0.98
3948 4445 0.036388 TTTGGACCTAGCTTCGCCAG 60.036 55.000 0.00 0.00 0.00 4.85
3949 4446 0.036388 CTTTGGACCTAGCTTCGCCA 60.036 55.000 0.00 0.00 0.00 5.69
4224 4721 2.672961 TAGCTGTGATGGTTTCCTCG 57.327 50.000 0.00 0.00 0.00 4.63
4361 4858 1.064017 ACTTTCAACCTGACCTGGCAA 60.064 47.619 0.00 0.00 0.00 4.52
4706 5206 8.659527 TCTGCCTATGGATTCTGATTTATGTAA 58.340 33.333 0.00 0.00 0.00 2.41
4726 5226 6.183360 CCTTCGGAAATGAAATTAATCTGCCT 60.183 38.462 0.00 0.00 33.67 4.75
4729 5229 8.623903 TCATCCTTCGGAAATGAAATTAATCTG 58.376 33.333 3.26 0.00 33.67 2.90
4742 5242 2.806945 AATGCCTCATCCTTCGGAAA 57.193 45.000 0.00 0.00 34.34 3.13
4743 5243 2.806945 AAATGCCTCATCCTTCGGAA 57.193 45.000 0.00 0.00 34.34 4.30
4748 5248 2.312741 TGGGAGAAAATGCCTCATCCTT 59.687 45.455 0.00 0.00 40.89 3.36
4841 5341 9.230932 GCTAAAATTTGCTGAACTATCATCTTC 57.769 33.333 0.00 0.00 34.37 2.87
5024 5527 4.893829 AGAGAAAGGGGTCTTACACTTC 57.106 45.455 0.00 0.00 32.01 3.01
5039 5542 7.404671 ACAAAAACCTAAAGCTGAAGAGAAA 57.595 32.000 0.00 0.00 0.00 2.52
5071 5574 8.743714 TGCAAACAAATGGATGTGTATAATACA 58.256 29.630 0.00 0.00 36.08 2.29
5072 5575 9.236691 CTGCAAACAAATGGATGTGTATAATAC 57.763 33.333 0.00 0.00 32.81 1.89
5073 5576 9.183368 TCTGCAAACAAATGGATGTGTATAATA 57.817 29.630 0.00 0.00 32.81 0.98
5074 5577 8.065473 TCTGCAAACAAATGGATGTGTATAAT 57.935 30.769 0.00 0.00 32.81 1.28
5075 5578 7.459795 TCTGCAAACAAATGGATGTGTATAA 57.540 32.000 0.00 0.00 32.81 0.98
5123 5627 3.429135 GGTAGAGAGTTGTAGGCTTTCCG 60.429 52.174 0.00 0.00 37.47 4.30
5197 5720 5.646577 ACTTTGTATCGAGACTGCTAAGT 57.353 39.130 12.03 11.87 40.21 2.24
5205 5728 5.847670 AAAGCTCAACTTTGTATCGAGAC 57.152 39.130 2.50 2.50 47.00 3.36
5330 5854 2.266055 CTCAACGGGGTCCTCAGC 59.734 66.667 0.00 0.00 0.00 4.26
5349 5873 1.795768 TGGACTGCAATCGTCTTGTC 58.204 50.000 4.76 0.00 0.00 3.18
5411 5935 1.555075 AGCATTCTCGGGTAAGCAAGA 59.445 47.619 0.00 0.00 0.00 3.02
5419 5943 2.787473 TTTCATCAGCATTCTCGGGT 57.213 45.000 0.00 0.00 0.00 5.28
5446 5970 2.093128 AACCGAGTGTGGACTCAGTTTT 60.093 45.455 0.00 0.00 44.18 2.43
5494 6018 6.534475 TTTCGAGTTTTATGGCTAGGACTA 57.466 37.500 0.00 0.00 0.00 2.59
5500 6024 4.394920 CCTTGCTTTCGAGTTTTATGGCTA 59.605 41.667 0.00 0.00 0.00 3.93
5622 6148 4.985409 TCTTCGAAAAGAACTCTTGAGCTC 59.015 41.667 6.82 6.82 38.58 4.09
5743 6269 1.203441 TCTGAACAGCCCTCAGCCAT 61.203 55.000 3.07 0.00 45.47 4.40
5748 6274 0.178921 ACCTCTCTGAACAGCCCTCA 60.179 55.000 0.00 0.00 0.00 3.86
5750 6276 1.197430 CCACCTCTCTGAACAGCCCT 61.197 60.000 0.00 0.00 0.00 5.19
5760 6286 4.820775 ACACATCCATATACCACCTCTCT 58.179 43.478 0.00 0.00 0.00 3.10
5882 6408 4.434330 CGCCGAAGAAATTATCGCTTATCC 60.434 45.833 3.45 0.00 37.73 2.59
5893 6419 1.305930 GGGTCAGCGCCGAAGAAATT 61.306 55.000 2.29 0.00 0.00 1.82
5919 6445 3.064820 TCACGTTGTTCTTCAGAAAAGCC 59.935 43.478 0.00 0.00 35.58 4.35
5952 6478 2.507407 TAACAAGTTCCATCCCCAGC 57.493 50.000 0.00 0.00 0.00 4.85
5967 6493 3.136809 TGTACTTGGCCACCTCTTTAACA 59.863 43.478 3.88 0.00 0.00 2.41
5972 6498 1.066143 CGATGTACTTGGCCACCTCTT 60.066 52.381 3.88 0.00 0.00 2.85
6043 6569 4.145052 GGTCCACTTTCCAAGTCTTTCAT 58.855 43.478 0.00 0.00 40.46 2.57
6188 6714 2.462723 TCCGATGTAACCTCATGGACA 58.537 47.619 0.00 0.00 37.04 4.02
6189 6715 3.069586 TGATCCGATGTAACCTCATGGAC 59.930 47.826 0.00 0.00 37.04 4.02
6197 6723 2.943033 CCAGGTTTGATCCGATGTAACC 59.057 50.000 11.06 11.06 38.78 2.85
6216 6742 0.322997 CCCATACGACCAAAAGGCCA 60.323 55.000 5.01 0.00 0.00 5.36
6318 6849 6.099269 TCCATTACCTCCTTATAACAGGACAC 59.901 42.308 11.32 0.00 38.11 3.67
6514 7046 7.428826 AGAGAAGAAAAGCATAACCAAACAAG 58.571 34.615 0.00 0.00 0.00 3.16
6539 7071 5.359576 ACTTTTACAGCCAACAACATCAAGA 59.640 36.000 0.00 0.00 0.00 3.02
6568 7100 8.116026 ACACACCCAATCTTATCTTTCCTATTT 58.884 33.333 0.00 0.00 0.00 1.40
6578 7110 9.561069 AACAATCTATACACACCCAATCTTATC 57.439 33.333 0.00 0.00 0.00 1.75
6581 7113 6.828785 GGAACAATCTATACACACCCAATCTT 59.171 38.462 0.00 0.00 0.00 2.40
6584 7116 5.193728 AGGGAACAATCTATACACACCCAAT 59.806 40.000 0.00 0.00 37.49 3.16
6636 7168 4.978388 AGGGAGAATTATATATCCTGCCCC 59.022 45.833 11.05 0.00 36.21 5.80
6675 7207 9.112725 CATGATTCACCAGAGTATGAATTGTAA 57.887 33.333 1.33 0.00 43.85 2.41
6676 7208 8.267183 ACATGATTCACCAGAGTATGAATTGTA 58.733 33.333 0.00 0.00 43.85 2.41
6677 7209 7.114754 ACATGATTCACCAGAGTATGAATTGT 58.885 34.615 0.00 0.92 43.85 2.71
6678 7210 7.281549 TGACATGATTCACCAGAGTATGAATTG 59.718 37.037 0.00 0.38 43.85 2.32
6679 7211 7.341030 TGACATGATTCACCAGAGTATGAATT 58.659 34.615 0.00 0.00 43.85 2.17
6680 7212 6.892485 TGACATGATTCACCAGAGTATGAAT 58.108 36.000 0.00 0.00 45.92 2.57
6723 7255 0.178944 ATGTGGATGGGCATGGATGG 60.179 55.000 0.00 0.00 0.00 3.51
6724 7256 2.165167 GTATGTGGATGGGCATGGATG 58.835 52.381 0.00 0.00 0.00 3.51
6725 7257 1.782140 TGTATGTGGATGGGCATGGAT 59.218 47.619 0.00 0.00 0.00 3.41
6726 7258 1.220703 TGTATGTGGATGGGCATGGA 58.779 50.000 0.00 0.00 0.00 3.41
6809 7343 3.081061 TGGTCCATCACTTACATTGCAC 58.919 45.455 0.00 0.00 0.00 4.57
6817 7351 3.785325 TCATTCCCATGGTCCATCACTTA 59.215 43.478 11.73 0.00 0.00 2.24
6820 7354 2.734755 TCATTCCCATGGTCCATCAC 57.265 50.000 11.73 0.00 0.00 3.06
6824 7358 3.688126 GCTACATTCATTCCCATGGTCCA 60.688 47.826 11.73 0.00 0.00 4.02
6859 7398 1.490910 GTAGGCTACTCCCCAAGCATT 59.509 52.381 17.35 0.00 40.61 3.56
6865 7404 0.976073 GCACAGTAGGCTACTCCCCA 60.976 60.000 23.95 0.00 36.76 4.96
6907 7449 4.980434 GCCATAACATGTAGTGGTAGTACG 59.020 45.833 23.08 4.57 32.45 3.67
6951 7496 6.489603 ACAAAAATACTGGTCCATACATCCA 58.510 36.000 0.00 0.00 0.00 3.41
6967 7512 5.303333 GGACCTGGACCAGAAAACAAAAATA 59.697 40.000 23.77 0.00 32.44 1.40
6973 7518 1.217916 TGGACCTGGACCAGAAAACA 58.782 50.000 23.77 12.72 32.44 2.83
7004 7555 7.063662 CGAGGAAGATCTGATGATGATCATTTC 59.936 40.741 10.14 10.65 41.85 2.17
7160 7716 5.929992 AGGCTTGAATTGTGAAATTGTGATG 59.070 36.000 0.00 0.00 0.00 3.07
7190 7748 4.280929 GCAACCACCTAAGTTTTCAATCCT 59.719 41.667 0.00 0.00 0.00 3.24
7191 7749 4.038642 TGCAACCACCTAAGTTTTCAATCC 59.961 41.667 0.00 0.00 0.00 3.01
7195 7753 3.626930 ACTGCAACCACCTAAGTTTTCA 58.373 40.909 0.00 0.00 0.00 2.69
7219 7778 3.751246 CCACACCAATGCCGCCTG 61.751 66.667 0.00 0.00 0.00 4.85
7227 7786 3.675348 ATCCATGATCACCACACCAAT 57.325 42.857 0.00 0.00 0.00 3.16
7502 8061 0.325577 TGCTGGACTGCCTGGAGATA 60.326 55.000 0.00 0.00 33.99 1.98
7613 8172 2.814097 CGATTCCCCTGACAAAGGTTGT 60.814 50.000 0.00 0.00 45.78 3.32
7627 8186 1.227438 TTTCCCGATCGCGATTCCC 60.227 57.895 24.55 9.72 40.82 3.97
7681 8240 4.785453 GGTTGGGCAGCCTCCTCG 62.785 72.222 12.43 0.00 0.00 4.63
7776 8335 2.046023 CAGATCCACAAGGCGGCA 60.046 61.111 13.08 0.00 33.74 5.69
7842 8401 2.358737 GTCACCAAGTCCGGGCTG 60.359 66.667 10.71 0.00 0.00 4.85
8024 8583 1.804151 TGCTGTTCACGTGGCTTAATC 59.196 47.619 17.00 0.26 0.00 1.75
8150 8711 2.094659 GTGTCAGGTGATGGCGACG 61.095 63.158 0.00 0.00 35.76 5.12
8184 8745 0.598065 ACCGGCAAAGCATCTGAAAC 59.402 50.000 0.00 0.00 0.00 2.78
8201 8762 3.287867 ACTTCCATGATCCATGTCACC 57.712 47.619 0.00 0.00 39.94 4.02
8212 8773 6.101332 GCTTGAAAATATGCAACTTCCATGA 58.899 36.000 0.00 0.00 0.00 3.07
8213 8774 5.292589 GGCTTGAAAATATGCAACTTCCATG 59.707 40.000 0.00 0.00 0.00 3.66
8214 8775 5.046448 TGGCTTGAAAATATGCAACTTCCAT 60.046 36.000 0.00 0.00 0.00 3.41
8215 8776 4.282957 TGGCTTGAAAATATGCAACTTCCA 59.717 37.500 0.00 0.00 0.00 3.53
8216 8777 4.819769 TGGCTTGAAAATATGCAACTTCC 58.180 39.130 0.00 0.00 0.00 3.46
8217 8778 5.292589 CCATGGCTTGAAAATATGCAACTTC 59.707 40.000 0.00 0.00 0.00 3.01
8218 8779 5.180271 CCATGGCTTGAAAATATGCAACTT 58.820 37.500 0.00 0.00 0.00 2.66
8224 8785 2.129607 GCGCCATGGCTTGAAAATATG 58.870 47.619 33.07 15.13 39.32 1.78
8227 8788 0.108520 CAGCGCCATGGCTTGAAAAT 60.109 50.000 33.07 9.02 42.53 1.82
8231 8792 2.116533 CATCAGCGCCATGGCTTGA 61.117 57.895 30.82 30.82 42.53 3.02
8232 8793 1.940883 AACATCAGCGCCATGGCTTG 61.941 55.000 33.07 28.22 42.53 4.01
8242 8803 4.330074 AGGTAAGAAATCGAAACATCAGCG 59.670 41.667 0.00 0.00 0.00 5.18
8244 8805 6.020281 CGAGAGGTAAGAAATCGAAACATCAG 60.020 42.308 0.00 0.00 35.47 2.90
8417 8978 2.588989 CTTCCTCTGCTCCCAGCC 59.411 66.667 0.00 0.00 41.51 4.85
8422 8983 2.511145 CGCTGCTTCCTCTGCTCC 60.511 66.667 0.00 0.00 0.00 4.70
8446 9007 1.186267 AACAGAGGACGTCCCCTGAC 61.186 60.000 42.15 23.62 36.49 3.51
8479 9048 1.301677 GCCCGTCCTTGCTTGAAGAG 61.302 60.000 0.00 0.00 32.82 2.85
8480 9049 1.302511 GCCCGTCCTTGCTTGAAGA 60.303 57.895 0.00 0.00 32.82 2.87
8481 9050 2.680913 CGCCCGTCCTTGCTTGAAG 61.681 63.158 0.00 0.00 0.00 3.02
8482 9051 2.668212 CGCCCGTCCTTGCTTGAA 60.668 61.111 0.00 0.00 0.00 2.69
8483 9052 3.936203 ACGCCCGTCCTTGCTTGA 61.936 61.111 0.00 0.00 0.00 3.02
8490 9068 0.903942 TAATTAACCACGCCCGTCCT 59.096 50.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.