Multiple sequence alignment - TraesCS2B01G426100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G426100 chr2B 100.000 5831 0 0 1 5831 612672558 612678388 0.000000e+00 10768.0
1 TraesCS2B01G426100 chr2B 88.235 374 40 2 318 688 616492059 616492431 1.490000e-120 444.0
2 TraesCS2B01G426100 chr2B 96.032 126 4 1 201 326 511150712 511150836 2.750000e-48 204.0
3 TraesCS2B01G426100 chr2B 76.903 381 65 13 5422 5780 476396644 476396265 1.660000e-45 195.0
4 TraesCS2B01G426100 chr2B 77.844 334 56 12 5459 5779 216713002 216712674 2.140000e-44 191.0
5 TraesCS2B01G426100 chr2D 93.427 4549 203 44 866 5370 520506750 520511246 0.000000e+00 6656.0
6 TraesCS2B01G426100 chr2D 78.548 303 43 13 5498 5783 57100402 57100105 4.640000e-41 180.0
7 TraesCS2B01G426100 chr2D 75.081 309 63 9 5486 5780 632050834 632051142 1.320000e-26 132.0
8 TraesCS2B01G426100 chr2D 92.453 53 4 0 811 863 520503388 520503440 6.270000e-10 76.8
9 TraesCS2B01G426100 chr2A 91.867 3627 186 50 1568 5144 665696249 665699816 0.000000e+00 4963.0
10 TraesCS2B01G426100 chr2A 92.199 564 37 5 1005 1561 665695557 665696120 0.000000e+00 791.0
11 TraesCS2B01G426100 chr2A 84.746 59 3 6 5728 5781 665700396 665700453 3.000000e-03 54.7
12 TraesCS2B01G426100 chr4A 97.388 689 15 3 1 688 702429507 702428821 0.000000e+00 1170.0
13 TraesCS2B01G426100 chr4A 91.262 206 13 3 1 204 76380051 76379849 5.760000e-70 276.0
14 TraesCS2B01G426100 chr4A 97.458 118 3 0 688 805 702427596 702427479 9.910000e-48 202.0
15 TraesCS2B01G426100 chr4A 76.596 282 50 7 5513 5779 648783682 648783962 2.190000e-29 141.0
16 TraesCS2B01G426100 chr4A 94.737 76 4 0 730 805 76379064 76378989 1.030000e-22 119.0
17 TraesCS2B01G426100 chr4A 88.889 90 10 0 3972 4061 16469323 16469412 1.720000e-20 111.0
18 TraesCS2B01G426100 chr4A 97.561 41 1 0 690 730 76379076 76379036 2.920000e-08 71.3
19 TraesCS2B01G426100 chr3B 95.785 688 17 4 1 687 605645899 605645223 0.000000e+00 1099.0
20 TraesCS2B01G426100 chr3B 94.385 374 19 1 316 687 255703756 255704129 1.820000e-159 573.0
21 TraesCS2B01G426100 chr3B 90.338 207 13 4 1 204 255703557 255703759 1.250000e-66 265.0
22 TraesCS2B01G426100 chr3B 98.333 120 2 0 201 320 694025133 694025014 1.650000e-50 211.0
23 TraesCS2B01G426100 chr3B 95.690 116 5 0 690 805 255705258 255705373 2.770000e-43 187.0
24 TraesCS2B01G426100 chr3B 89.130 92 9 1 3971 4061 565270282 565270191 4.780000e-21 113.0
25 TraesCS2B01G426100 chr3B 87.719 57 3 1 5728 5780 555493305 555493361 4.880000e-06 63.9
26 TraesCS2B01G426100 chr5D 86.933 375 43 5 317 688 549426402 549426031 3.250000e-112 416.0
27 TraesCS2B01G426100 chr5D 94.697 132 5 2 195 326 30459066 30459195 2.750000e-48 204.0
28 TraesCS2B01G426100 chr5D 77.246 334 70 3 5381 5709 348499600 348499932 2.140000e-44 191.0
29 TraesCS2B01G426100 chr5D 85.405 185 20 3 17 199 549426584 549426405 9.980000e-43 185.0
30 TraesCS2B01G426100 chr5D 74.568 405 80 14 5402 5784 328440305 328439902 7.820000e-34 156.0
31 TraesCS2B01G426100 chr5D 92.105 76 5 1 730 805 549425150 549425076 7.990000e-19 106.0
32 TraesCS2B01G426100 chr7B 86.327 373 46 5 318 688 621574461 621574092 9.100000e-108 401.0
33 TraesCS2B01G426100 chr7B 75.862 290 48 15 5510 5780 60479599 60479313 1.710000e-25 128.0
34 TraesCS2B01G426100 chr1A 94.660 206 9 2 1 204 54006506 54006301 9.430000e-83 318.0
35 TraesCS2B01G426100 chr1A 91.262 206 13 3 1 204 109424400 109424198 5.760000e-70 276.0
36 TraesCS2B01G426100 chr1A 95.690 116 5 0 690 805 54005526 54005411 2.770000e-43 187.0
37 TraesCS2B01G426100 chr1A 94.845 97 5 0 316 412 109424201 109424105 1.010000e-32 152.0
38 TraesCS2B01G426100 chr1A 80.978 184 34 1 355 538 333962992 333963174 1.690000e-30 145.0
39 TraesCS2B01G426100 chr1A 97.561 41 1 0 690 730 109423423 109423383 2.920000e-08 71.3
40 TraesCS2B01G426100 chr7D 95.312 128 5 1 191 318 192019278 192019152 9.910000e-48 202.0
41 TraesCS2B01G426100 chr7D 90.244 82 8 0 3972 4053 119897077 119896996 2.220000e-19 108.0
42 TraesCS2B01G426100 chr7D 97.059 34 1 0 776 809 503783058 503783025 2.270000e-04 58.4
43 TraesCS2B01G426100 chr4D 94.030 134 7 1 191 323 52629718 52629851 9.910000e-48 202.0
44 TraesCS2B01G426100 chr4D 87.778 90 11 0 3972 4061 450203791 450203702 7.990000e-19 106.0
45 TraesCS2B01G426100 chr4D 92.500 40 3 0 777 816 372832551 372832512 2.270000e-04 58.4
46 TraesCS2B01G426100 chr1B 94.615 130 6 1 201 330 95761764 95761636 3.560000e-47 200.0
47 TraesCS2B01G426100 chr3D 94.531 128 7 0 191 318 555117076 555117203 1.280000e-46 198.0
48 TraesCS2B01G426100 chr6B 95.082 122 6 0 690 811 710149466 710149587 5.960000e-45 193.0
49 TraesCS2B01G426100 chr6B 75.196 383 79 9 5409 5781 641909236 641908860 3.610000e-37 167.0
50 TraesCS2B01G426100 chrUn 75.439 399 71 11 5405 5781 474691255 474690862 1.000000e-37 169.0
51 TraesCS2B01G426100 chr1D 78.261 276 50 7 5426 5693 411058088 411058361 1.000000e-37 169.0
52 TraesCS2B01G426100 chr1D 74.439 223 40 9 5574 5780 48025818 48025597 4.840000e-11 80.5
53 TraesCS2B01G426100 chr5A 75.602 332 71 8 5459 5782 505496408 505496737 7.820000e-34 156.0
54 TraesCS2B01G426100 chr4B 93.814 97 6 0 689 785 55705949 55705853 4.710000e-31 147.0
55 TraesCS2B01G426100 chr4B 74.154 325 66 10 5473 5781 415114952 415115274 1.030000e-22 119.0
56 TraesCS2B01G426100 chr4B 89.535 86 9 0 3972 4057 131712245 131712330 6.180000e-20 110.0
57 TraesCS2B01G426100 chr6A 79.245 159 33 0 5521 5679 445606154 445606312 1.720000e-20 111.0
58 TraesCS2B01G426100 chr6D 85.437 103 13 2 3965 4067 292073366 292073466 7.990000e-19 106.0
59 TraesCS2B01G426100 chr3A 87.912 91 9 2 3967 4057 679696648 679696560 7.990000e-19 106.0
60 TraesCS2B01G426100 chr5B 84.746 59 4 3 777 832 670802453 670802397 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G426100 chr2B 612672558 612678388 5830 False 10768.000000 10768 100.000000 1 5831 1 chr2B.!!$F2 5830
1 TraesCS2B01G426100 chr2D 520503388 520511246 7858 False 3366.400000 6656 92.940000 811 5370 2 chr2D.!!$F2 4559
2 TraesCS2B01G426100 chr2A 665695557 665700453 4896 False 1936.233333 4963 89.604000 1005 5781 3 chr2A.!!$F1 4776
3 TraesCS2B01G426100 chr4A 702427479 702429507 2028 True 686.000000 1170 97.423000 1 805 2 chr4A.!!$R2 804
4 TraesCS2B01G426100 chr3B 605645223 605645899 676 True 1099.000000 1099 95.785000 1 687 1 chr3B.!!$R2 686
5 TraesCS2B01G426100 chr3B 255703557 255705373 1816 False 341.666667 573 93.471000 1 805 3 chr3B.!!$F2 804
6 TraesCS2B01G426100 chr5D 549425076 549426584 1508 True 235.666667 416 88.147667 17 805 3 chr5D.!!$R2 788
7 TraesCS2B01G426100 chr1A 54005411 54006506 1095 True 252.500000 318 95.175000 1 805 2 chr1A.!!$R1 804

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
906 5518 0.178955 TCACTGACCGGTGGACCTAA 60.179 55.0 14.63 0.0 37.75 2.69 F
910 5522 0.533491 TGACCGGTGGACCTAAATCG 59.467 55.0 14.63 0.0 0.00 3.34 F
911 5523 0.808847 GACCGGTGGACCTAAATCGC 60.809 60.0 14.63 0.0 0.00 4.58 F
2383 7147 0.601311 GCGGATGAGGATAGGTGCAC 60.601 60.0 8.80 8.8 0.00 4.57 F
3006 7773 0.883833 AATGCTACTGTTGTGCTGCC 59.116 50.0 0.00 0.0 0.00 4.85 F
4335 9107 0.031857 CAGTTGGCGCAATGTTGGAA 59.968 50.0 10.83 0.0 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2225 6989 0.383949 GGAGCAAACGAAAACAGCCA 59.616 50.000 0.00 0.00 0.00 4.75 R
2331 7095 1.540707 TCGGGGCGAAAAACAATTACC 59.459 47.619 0.00 0.00 31.06 2.85 R
2505 7269 4.016444 GCACATAACCCATGAGAAAGGAA 58.984 43.478 0.00 0.00 38.10 3.36 R
4168 8940 0.173481 CATGAAATGCTGCTGCTGCT 59.827 50.000 27.67 11.62 37.62 4.24 R
4448 9220 1.070134 GAGTACAGTTGCTGGGACACA 59.930 52.381 0.00 0.00 35.51 3.72 R
5795 10727 0.036765 TCGCCGGAAGTACAAAGCAT 60.037 50.000 5.05 0.00 0.00 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 72 8.876275 TTCCTTTTGAATCTTGATCTTGTTTG 57.124 30.769 0.00 0.00 0.00 2.93
161 167 9.787435 TCTTACCTTTCTTATGCTTTTAAGACA 57.213 29.630 4.51 0.00 37.80 3.41
162 168 9.827411 CTTACCTTTCTTATGCTTTTAAGACAC 57.173 33.333 4.51 0.00 37.80 3.67
485 491 6.542005 TGTGCATTCTTTACAGAACTCTTTCA 59.458 34.615 0.00 0.00 42.05 2.69
500 506 4.989168 ACTCTTTCACTTCCGTTACATGTC 59.011 41.667 0.00 0.00 0.00 3.06
529 535 1.381522 TGCAATCATCCACCACATCG 58.618 50.000 0.00 0.00 0.00 3.84
766 2071 9.259832 AGAAGGGTTATATGAGCAAGAATTTTT 57.740 29.630 0.00 0.00 0.00 1.94
805 2110 3.949313 GCACGTGCAAGCTTACTAC 57.051 52.632 34.52 0.19 41.59 2.73
806 2111 1.429463 GCACGTGCAAGCTTACTACT 58.571 50.000 34.52 0.00 41.59 2.57
807 2112 1.798813 GCACGTGCAAGCTTACTACTT 59.201 47.619 34.52 0.00 41.59 2.24
808 2113 2.223377 GCACGTGCAAGCTTACTACTTT 59.777 45.455 34.52 0.00 41.59 2.66
809 2114 3.664537 GCACGTGCAAGCTTACTACTTTC 60.665 47.826 34.52 0.00 41.59 2.62
822 2127 7.699812 AGCTTACTACTTTCCGTTAAACTATCG 59.300 37.037 0.00 0.00 0.00 2.92
831 2136 4.558470 TCCGTTAAACTATCGTTTACGCAG 59.442 41.667 2.25 0.36 43.30 5.18
833 2138 4.259530 CGTTAAACTATCGTTTACGCAGGG 60.260 45.833 2.25 0.00 43.30 4.45
834 2139 2.304751 AACTATCGTTTACGCAGGGG 57.695 50.000 0.00 0.00 39.60 4.79
863 2168 0.464452 CGCTTTACCCCTACCTGAGG 59.536 60.000 0.00 0.00 46.25 3.86
864 2169 0.180642 GCTTTACCCCTACCTGAGGC 59.819 60.000 0.00 0.00 45.17 4.70
869 5481 2.122813 CCCTACCTGAGGCCCGAT 60.123 66.667 0.00 0.00 45.17 4.18
889 5501 4.495422 GATCTAAAGACGTTTCTGCCTCA 58.505 43.478 0.00 0.00 29.98 3.86
905 5517 0.611062 CTCACTGACCGGTGGACCTA 60.611 60.000 14.63 0.00 37.75 3.08
906 5518 0.178955 TCACTGACCGGTGGACCTAA 60.179 55.000 14.63 0.00 37.75 2.69
907 5519 0.682852 CACTGACCGGTGGACCTAAA 59.317 55.000 14.63 0.00 33.95 1.85
908 5520 1.278127 CACTGACCGGTGGACCTAAAT 59.722 52.381 14.63 0.00 33.95 1.40
909 5521 1.553704 ACTGACCGGTGGACCTAAATC 59.446 52.381 14.63 0.00 0.00 2.17
910 5522 0.533491 TGACCGGTGGACCTAAATCG 59.467 55.000 14.63 0.00 0.00 3.34
911 5523 0.808847 GACCGGTGGACCTAAATCGC 60.809 60.000 14.63 0.00 0.00 4.58
912 5524 1.262640 ACCGGTGGACCTAAATCGCT 61.263 55.000 6.12 0.00 0.00 4.93
992 5604 4.410400 GCCTGGACCCACTTCCGG 62.410 72.222 0.00 0.00 41.28 5.14
993 5605 2.928396 CCTGGACCCACTTCCGGT 60.928 66.667 0.00 0.00 40.12 5.28
994 5606 2.526046 CCTGGACCCACTTCCGGTT 61.526 63.158 0.00 0.00 40.12 4.44
995 5607 1.003718 CTGGACCCACTTCCGGTTC 60.004 63.158 0.00 0.00 38.69 3.62
996 5608 2.350134 GGACCCACTTCCGGTTCC 59.650 66.667 0.00 0.00 32.27 3.62
997 5609 2.047560 GACCCACTTCCGGTTCCG 60.048 66.667 0.00 4.08 32.27 4.30
1110 5727 3.399181 GATCTCCCCACCGTGCCA 61.399 66.667 0.00 0.00 0.00 4.92
1112 5729 3.268103 ATCTCCCCACCGTGCCAAC 62.268 63.158 0.00 0.00 0.00 3.77
1297 5914 1.987770 GTACGAGTTTTCATCCGCGAA 59.012 47.619 8.23 0.00 0.00 4.70
1345 5964 1.135083 GTCGTACTGCCTGCACTATGT 60.135 52.381 0.00 0.00 0.00 2.29
1439 6058 4.459089 GTCTCCAGGCGAGGCACC 62.459 72.222 0.00 0.00 43.22 5.01
1473 6092 1.746615 CTGTGTTCCGCCCTGATGG 60.747 63.158 0.00 0.00 37.09 3.51
1490 6109 2.928801 TGGCGGCATCATACAAGTAT 57.071 45.000 7.97 0.00 0.00 2.12
1588 6329 5.483685 ACTGGCAGAACAAGAACATAGTA 57.516 39.130 23.66 0.00 0.00 1.82
1627 6372 7.177184 TGTATATGAAGGATGGGGATTCATTG 58.823 38.462 5.11 0.00 34.58 2.82
1781 6542 7.168219 TGATCATGTCAAAAGGTTTACTAGCT 58.832 34.615 0.00 0.00 32.78 3.32
1800 6561 5.927281 AGCTACGAGGAGGTAAATAAACA 57.073 39.130 0.00 0.00 0.00 2.83
1804 6565 6.255237 GCTACGAGGAGGTAAATAAACAAGAC 59.745 42.308 0.00 0.00 0.00 3.01
1805 6566 5.485620 ACGAGGAGGTAAATAAACAAGACC 58.514 41.667 0.00 0.00 0.00 3.85
1810 6571 8.721133 AGGAGGTAAATAAACAAGACCAAATT 57.279 30.769 0.00 0.00 32.28 1.82
2145 6909 2.159382 ACGGCCAGGTTTGTTTATCTG 58.841 47.619 2.24 0.00 0.00 2.90
2196 6960 1.948104 TGGTGAACAGTGCTGTGTAC 58.052 50.000 5.53 7.88 44.13 2.90
2203 6967 6.036083 GGTGAACAGTGCTGTGTACATAATAG 59.964 42.308 5.53 0.00 44.13 1.73
2225 6989 8.757982 ATAGCCTTGTTGATTTCAGATATGTT 57.242 30.769 0.00 0.00 0.00 2.71
2231 6995 5.711506 TGTTGATTTCAGATATGTTGGCTGT 59.288 36.000 0.00 0.00 0.00 4.40
2247 7011 2.227865 GGCTGTTTTCGTTTGCTCCATA 59.772 45.455 0.00 0.00 0.00 2.74
2261 7025 7.491682 GTTTGCTCCATATTTGTTGGATATGT 58.508 34.615 0.00 0.00 42.26 2.29
2264 7028 6.832900 TGCTCCATATTTGTTGGATATGTTCA 59.167 34.615 0.00 0.00 42.26 3.18
2331 7095 2.289694 ACACAGAAAGGAGGATGGTTCG 60.290 50.000 0.00 0.00 0.00 3.95
2383 7147 0.601311 GCGGATGAGGATAGGTGCAC 60.601 60.000 8.80 8.80 0.00 4.57
2504 7268 4.392754 TGAACAGTGACATGTGATGCATAC 59.607 41.667 1.15 0.00 35.74 2.39
2505 7269 4.212143 ACAGTGACATGTGATGCATACT 57.788 40.909 1.15 0.00 35.74 2.12
2536 7300 3.003394 TGGGTTATGTGCTTCATGAGG 57.997 47.619 0.00 0.00 37.91 3.86
2644 7408 3.378339 CCCGGAGTATACATTTGTCGTC 58.622 50.000 0.73 0.00 0.00 4.20
2682 7446 3.057526 GGTCACTATTTCAAGGTTGGTGC 60.058 47.826 0.00 0.00 0.00 5.01
2783 7549 2.683362 GGCCTGTCACCAATTAGCTTAC 59.317 50.000 0.00 0.00 0.00 2.34
2833 7599 2.505819 ACCTGGTGGAACTGGTGATATC 59.494 50.000 0.00 0.00 40.76 1.63
2987 7754 3.569194 TTGCAGTTACCCTCAACTTGA 57.431 42.857 0.00 0.00 36.61 3.02
3006 7773 0.883833 AATGCTACTGTTGTGCTGCC 59.116 50.000 0.00 0.00 0.00 4.85
3058 7825 5.250774 AGGATAGTGGTAGCTTTCCTCAAAA 59.749 40.000 0.00 0.00 41.11 2.44
3059 7826 6.069381 AGGATAGTGGTAGCTTTCCTCAAAAT 60.069 38.462 0.00 0.00 41.11 1.82
3067 7834 7.234577 TGGTAGCTTTCCTCAAAATATTTGGTT 59.765 33.333 0.39 0.00 0.00 3.67
3163 7930 3.196463 TGATGCTTTGCACTTTTGTTGG 58.804 40.909 0.00 0.00 43.04 3.77
3307 8074 3.973206 TGGTGAAGGTATGTGTACTGG 57.027 47.619 0.00 0.00 0.00 4.00
3326 8093 3.826157 CTGGACTTTGTTCCATTTGGCTA 59.174 43.478 0.00 0.00 44.97 3.93
3327 8094 4.415596 TGGACTTTGTTCCATTTGGCTAT 58.584 39.130 0.00 0.00 41.00 2.97
3328 8095 4.220382 TGGACTTTGTTCCATTTGGCTATG 59.780 41.667 0.00 0.00 41.00 2.23
3371 8138 6.920569 AAACAACAGTGTAGAGTAGTTTGG 57.079 37.500 0.00 0.00 36.80 3.28
3378 8145 8.426569 ACAGTGTAGAGTAGTTTGGGTATTAA 57.573 34.615 0.00 0.00 0.00 1.40
3383 8150 5.365619 AGAGTAGTTTGGGTATTAATGCCG 58.634 41.667 15.42 0.00 32.83 5.69
3384 8151 5.104652 AGAGTAGTTTGGGTATTAATGCCGT 60.105 40.000 15.42 1.89 32.83 5.68
3400 8167 2.685388 TGCCGTTGATTTCACTGACAAA 59.315 40.909 0.00 0.00 0.00 2.83
3434 8201 5.330271 GCATTTGCGTAGTCTATCGAAAT 57.670 39.130 0.00 6.39 0.00 2.17
3447 8215 7.612677 AGTCTATCGAAATAACTGAACAAGGT 58.387 34.615 0.00 0.00 0.00 3.50
3505 8273 8.365647 TGCTAGTAGCCAGGATATTTACTTAAC 58.634 37.037 19.41 0.00 41.51 2.01
3540 8309 6.567687 TCCAAACTGTACATGTTGTATTGG 57.432 37.500 2.30 12.82 39.13 3.16
3551 8320 7.225784 ACATGTTGTATTGGCACTATTTTCA 57.774 32.000 0.00 0.00 0.00 2.69
3639 8408 5.425630 ACTCCACTATTAACGGGAACAATC 58.574 41.667 0.00 0.00 0.00 2.67
3669 8438 9.050601 CCTGGAATCACAAGAAGAAGTATAATC 57.949 37.037 0.00 0.00 0.00 1.75
3679 8448 8.397906 CAAGAAGAAGTATAATCGAAATTGCCA 58.602 33.333 0.00 0.00 0.00 4.92
3681 8450 6.305693 AGAAGTATAATCGAAATTGCCAGC 57.694 37.500 0.00 0.00 0.00 4.85
3693 8462 4.563140 AATTGCCAGCAATCTTGGAATT 57.437 36.364 17.63 0.00 44.86 2.17
3722 8491 4.583871 ACTCAAACAGGGATGTTCATCTC 58.416 43.478 11.73 8.43 0.00 2.75
3723 8492 4.288105 ACTCAAACAGGGATGTTCATCTCT 59.712 41.667 9.14 9.14 0.00 3.10
3726 8495 5.013495 TCAAACAGGGATGTTCATCTCTTCT 59.987 40.000 11.92 0.91 0.00 2.85
3729 8498 3.113824 AGGGATGTTCATCTCTTCTGCT 58.886 45.455 9.14 0.00 0.00 4.24
3730 8499 3.134442 AGGGATGTTCATCTCTTCTGCTC 59.866 47.826 9.14 0.00 0.00 4.26
3734 8503 4.185467 TGTTCATCTCTTCTGCTCAGAC 57.815 45.455 0.00 0.00 37.14 3.51
3743 8512 4.285020 TCTTCTGCTCAGACCATCTATGT 58.715 43.478 0.00 0.00 37.14 2.29
3760 8529 8.880750 CCATCTATGTAGCAACAATATGAGATG 58.119 37.037 0.00 0.00 39.58 2.90
3763 8532 8.641541 TCTATGTAGCAACAATATGAGATGTGA 58.358 33.333 0.00 0.00 39.58 3.58
3777 8546 7.721286 ATGAGATGTGAATACGATCTTTTCC 57.279 36.000 0.00 0.00 30.25 3.13
3787 8556 8.673711 TGAATACGATCTTTTCCTTTAACATGG 58.326 33.333 0.00 0.00 0.00 3.66
3844 8613 4.063998 TGCGATAGATGAGTTGCTTGAT 57.936 40.909 0.00 0.00 39.76 2.57
3978 8750 6.729569 ACTAGTATCCCATTTACATACTCCCC 59.270 42.308 0.00 0.00 35.43 4.81
4034 8806 6.204688 TCAAATTTGAACTAAGAGCACGACAT 59.795 34.615 18.45 0.00 33.55 3.06
4039 8811 7.667043 TTGAACTAAGAGCACGACATTTATT 57.333 32.000 0.00 0.00 0.00 1.40
4053 8825 5.415701 CGACATTTATTATGGAATGGAGGGG 59.584 44.000 7.62 0.00 37.53 4.79
4063 8835 3.140144 TGGAATGGAGGGGGTATTTGATC 59.860 47.826 0.00 0.00 0.00 2.92
4089 8861 2.436173 AGACTACCAAATCTAGGCAGGC 59.564 50.000 0.00 0.00 0.00 4.85
4334 9106 1.659233 CAGTTGGCGCAATGTTGGA 59.341 52.632 10.83 0.00 0.00 3.53
4335 9107 0.031857 CAGTTGGCGCAATGTTGGAA 59.968 50.000 10.83 0.00 0.00 3.53
4466 9238 1.512926 CTGTGTCCCAGCAACTGTAC 58.487 55.000 0.00 0.00 33.59 2.90
4469 9241 1.070134 GTGTCCCAGCAACTGTACTCA 59.930 52.381 0.00 0.00 0.00 3.41
4561 9333 4.996122 GCTTTATCATCTGGATGGTCTCTG 59.004 45.833 10.22 0.00 39.24 3.35
4563 9335 1.870064 TCATCTGGATGGTCTCTGCA 58.130 50.000 10.22 0.00 39.24 4.41
4627 9400 5.302568 TCTGTCAGGAAATTTTGCAGAATGT 59.697 36.000 2.81 0.00 39.31 2.71
4628 9401 6.489700 TCTGTCAGGAAATTTTGCAGAATGTA 59.510 34.615 2.81 0.00 39.31 2.29
4629 9402 6.446318 TGTCAGGAAATTTTGCAGAATGTAC 58.554 36.000 2.81 0.00 39.31 2.90
4635 9408 8.515414 AGGAAATTTTGCAGAATGTACTAGAAC 58.485 33.333 2.96 0.00 39.31 3.01
4702 9475 2.915349 GCATCAAGCTGGATCAGAAGA 58.085 47.619 0.00 0.00 41.15 2.87
4703 9476 3.478509 GCATCAAGCTGGATCAGAAGAT 58.521 45.455 0.00 0.00 41.15 2.40
4744 9521 5.911838 GCTGTTGTTTCTTCTCATTCTGTTC 59.088 40.000 0.00 0.00 0.00 3.18
4789 9568 9.436957 ACTTTGAGTGTAAATAACTCTACCATG 57.563 33.333 5.29 0.00 43.69 3.66
4860 9639 5.540719 GGTTCATTACTAGGCACCTATCTCT 59.459 44.000 0.00 0.00 0.00 3.10
4873 9652 6.426328 GGCACCTATCTCTTTTATGTCTGATG 59.574 42.308 0.00 0.00 0.00 3.07
4875 9654 8.144478 GCACCTATCTCTTTTATGTCTGATGTA 58.856 37.037 0.00 0.00 0.00 2.29
4936 9723 7.017645 CAGTGCATAATTATATTTCGTCAGGC 58.982 38.462 0.00 0.00 0.00 4.85
5013 9810 0.325203 GCCTGGTCTCCTCTTCCTCT 60.325 60.000 0.00 0.00 0.00 3.69
5014 9811 1.899438 GCCTGGTCTCCTCTTCCTCTT 60.899 57.143 0.00 0.00 0.00 2.85
5016 9813 2.107366 CTGGTCTCCTCTTCCTCTTCC 58.893 57.143 0.00 0.00 0.00 3.46
5017 9814 1.719378 TGGTCTCCTCTTCCTCTTCCT 59.281 52.381 0.00 0.00 0.00 3.36
5018 9815 2.291930 TGGTCTCCTCTTCCTCTTCCTC 60.292 54.545 0.00 0.00 0.00 3.71
5019 9816 2.021457 GTCTCCTCTTCCTCTTCCTCG 58.979 57.143 0.00 0.00 0.00 4.63
5020 9817 1.064314 TCTCCTCTTCCTCTTCCTCGG 60.064 57.143 0.00 0.00 0.00 4.63
5021 9818 0.684805 TCCTCTTCCTCTTCCTCGGC 60.685 60.000 0.00 0.00 0.00 5.54
5134 9935 7.709149 TGTGACATATCCATCCATCTACTAG 57.291 40.000 0.00 0.00 0.00 2.57
5138 9939 8.615705 TGACATATCCATCCATCTACTAGTAGT 58.384 37.037 25.58 8.14 34.84 2.73
5139 9940 9.469097 GACATATCCATCCATCTACTAGTAGTT 57.531 37.037 25.58 16.92 34.84 2.24
5215 10023 6.159751 AGTCATAATAACCCCTTTTGGCTCTA 59.840 38.462 0.00 0.00 38.58 2.43
5219 10027 1.446016 ACCCCTTTTGGCTCTACTGT 58.554 50.000 0.00 0.00 38.58 3.55
5260 10068 3.439857 TTGTGGATCAAAAGGGAGAGG 57.560 47.619 0.00 0.00 32.64 3.69
5294 10108 7.167136 GGCAATATATATTCTTACCGCTCGTAC 59.833 40.741 4.93 0.00 0.00 3.67
5351 10165 1.608025 GCTGCTACTACACACCAAGCA 60.608 52.381 0.00 0.00 40.68 3.91
5355 10169 4.900684 TGCTACTACACACCAAGCATTTA 58.099 39.130 0.00 0.00 38.22 1.40
5358 10172 3.418047 ACTACACACCAAGCATTTACCC 58.582 45.455 0.00 0.00 0.00 3.69
5359 10173 2.675658 ACACACCAAGCATTTACCCT 57.324 45.000 0.00 0.00 0.00 4.34
5362 10176 1.710809 ACACCAAGCATTTACCCTCCT 59.289 47.619 0.00 0.00 0.00 3.69
5364 10178 3.527665 ACACCAAGCATTTACCCTCCTAT 59.472 43.478 0.00 0.00 0.00 2.57
5365 10179 4.017499 ACACCAAGCATTTACCCTCCTATT 60.017 41.667 0.00 0.00 0.00 1.73
5366 10180 4.580580 CACCAAGCATTTACCCTCCTATTC 59.419 45.833 0.00 0.00 0.00 1.75
5380 10284 7.660169 ACCCTCCTATTCCTTAGTAGTTTAGT 58.340 38.462 0.00 0.00 0.00 2.24
5383 10287 9.819267 CCTCCTATTCCTTAGTAGTTTAGTTTG 57.181 37.037 0.00 0.00 0.00 2.93
5390 10294 8.127150 TCCTTAGTAGTTTAGTTTGAGTACCC 57.873 38.462 0.00 0.00 0.00 3.69
5391 10295 7.729881 TCCTTAGTAGTTTAGTTTGAGTACCCA 59.270 37.037 0.00 0.00 0.00 4.51
5392 10296 8.033626 CCTTAGTAGTTTAGTTTGAGTACCCAG 58.966 40.741 0.00 0.00 0.00 4.45
5393 10297 5.791666 AGTAGTTTAGTTTGAGTACCCAGC 58.208 41.667 0.00 0.00 0.00 4.85
5394 10298 4.699925 AGTTTAGTTTGAGTACCCAGCA 57.300 40.909 0.00 0.00 0.00 4.41
5395 10299 4.642429 AGTTTAGTTTGAGTACCCAGCAG 58.358 43.478 0.00 0.00 0.00 4.24
5396 10300 3.695830 TTAGTTTGAGTACCCAGCAGG 57.304 47.619 0.00 0.00 43.78 4.85
5397 10301 0.036875 AGTTTGAGTACCCAGCAGGC 59.963 55.000 0.00 0.00 40.58 4.85
5398 10302 1.003839 TTTGAGTACCCAGCAGGCG 60.004 57.895 0.00 0.00 40.58 5.52
5399 10303 1.764571 TTTGAGTACCCAGCAGGCGT 61.765 55.000 0.00 0.00 40.58 5.68
5400 10304 0.901114 TTGAGTACCCAGCAGGCGTA 60.901 55.000 0.00 0.00 40.58 4.42
5401 10305 1.320344 TGAGTACCCAGCAGGCGTAG 61.320 60.000 0.00 0.00 40.58 3.51
5402 10306 1.305046 AGTACCCAGCAGGCGTAGT 60.305 57.895 0.00 0.00 40.58 2.73
5404 10308 3.014085 TACCCAGCAGGCGTAGTGC 62.014 63.158 0.00 0.00 45.38 4.40
5431 10342 1.683319 GGATGGTGGGGCTTCTTCTTC 60.683 57.143 0.00 0.00 0.00 2.87
5432 10343 1.004745 GATGGTGGGGCTTCTTCTTCA 59.995 52.381 0.00 0.00 0.00 3.02
5440 10351 4.099419 TGGGGCTTCTTCTTCAAGTTTTTC 59.901 41.667 0.00 0.00 0.00 2.29
5447 10358 4.578928 TCTTCTTCAAGTTTTTCTTCCGGG 59.421 41.667 0.00 0.00 33.63 5.73
5448 10359 2.621526 TCTTCAAGTTTTTCTTCCGGGC 59.378 45.455 0.00 0.00 33.63 6.13
5451 10362 3.028130 TCAAGTTTTTCTTCCGGGCTTT 58.972 40.909 0.00 0.00 33.63 3.51
5452 10363 3.123050 CAAGTTTTTCTTCCGGGCTTTG 58.877 45.455 0.00 0.00 33.63 2.77
5457 10374 2.806945 TTCTTCCGGGCTTTGATCAT 57.193 45.000 0.00 0.00 0.00 2.45
5464 10381 1.468520 CGGGCTTTGATCATGTTCGTT 59.531 47.619 0.00 0.00 0.00 3.85
5470 10387 5.294306 GGCTTTGATCATGTTCGTTCATCTA 59.706 40.000 0.00 0.00 0.00 1.98
5483 10400 5.114081 TCGTTCATCTAGACATAGTCGACA 58.886 41.667 19.50 4.13 37.67 4.35
5487 10404 5.919755 TCATCTAGACATAGTCGACAGAGT 58.080 41.667 19.50 12.27 37.67 3.24
5490 10407 5.117584 TCTAGACATAGTCGACAGAGTTCC 58.882 45.833 19.50 2.07 37.67 3.62
5491 10408 2.678836 AGACATAGTCGACAGAGTTCCG 59.321 50.000 19.50 0.00 37.67 4.30
5496 10413 2.805353 CGACAGAGTTCCGGCGTG 60.805 66.667 6.01 0.00 0.00 5.34
5505 10422 3.702802 TCCGGCGTGGATTACTGT 58.297 55.556 6.01 0.00 43.74 3.55
5507 10424 1.216977 CCGGCGTGGATTACTGTCA 59.783 57.895 6.01 0.00 42.00 3.58
5508 10425 1.082117 CCGGCGTGGATTACTGTCAC 61.082 60.000 6.01 0.00 42.00 3.67
5535 10452 1.744014 GGCGGCGAGATTAGGGTTA 59.256 57.895 12.98 0.00 0.00 2.85
5547 10464 3.880047 TTAGGGTTACTCGTCATGTGG 57.120 47.619 0.00 0.00 0.00 4.17
5549 10466 0.036765 GGGTTACTCGTCATGTGGCA 60.037 55.000 0.00 0.00 0.00 4.92
5556 10473 2.485426 ACTCGTCATGTGGCAAGATTTG 59.515 45.455 0.00 0.00 0.00 2.32
5558 10475 3.346315 TCGTCATGTGGCAAGATTTGAT 58.654 40.909 0.00 0.00 0.00 2.57
5564 10481 3.753815 TGTGGCAAGATTTGATGTCAGA 58.246 40.909 0.00 0.00 30.67 3.27
5583 10500 6.985059 TGTCAGATGCTTCAGATCTATTCAAG 59.015 38.462 0.00 0.00 0.00 3.02
5584 10501 6.424509 GTCAGATGCTTCAGATCTATTCAAGG 59.575 42.308 0.00 0.00 0.00 3.61
5585 10502 5.701750 CAGATGCTTCAGATCTATTCAAGGG 59.298 44.000 0.00 0.00 0.00 3.95
5591 10508 6.545298 GCTTCAGATCTATTCAAGGGTTCAAT 59.455 38.462 0.00 0.00 0.00 2.57
5592 10509 7.468357 GCTTCAGATCTATTCAAGGGTTCAATG 60.468 40.741 0.00 0.00 0.00 2.82
5594 10511 6.069440 TCAGATCTATTCAAGGGTTCAATGGT 60.069 38.462 0.00 0.00 0.00 3.55
5605 10522 0.948623 TTCAATGGTGACGACTGCCG 60.949 55.000 0.00 0.00 45.44 5.69
5608 10525 3.649277 ATGGTGACGACTGCCGCTC 62.649 63.158 0.00 0.00 43.32 5.03
5623 10540 2.765807 CTCCAGGGTGCCGATCCT 60.766 66.667 0.00 0.00 29.73 3.24
5624 10541 2.764128 TCCAGGGTGCCGATCCTC 60.764 66.667 0.00 0.00 25.21 3.71
5625 10542 3.083349 CCAGGGTGCCGATCCTCA 61.083 66.667 0.00 0.00 25.21 3.86
5626 10543 2.503061 CAGGGTGCCGATCCTCAG 59.497 66.667 0.00 0.00 25.21 3.35
5627 10544 2.765807 AGGGTGCCGATCCTCAGG 60.766 66.667 0.00 0.00 0.00 3.86
5628 10545 3.866582 GGGTGCCGATCCTCAGGG 61.867 72.222 0.00 0.00 0.00 4.45
5629 10546 3.866582 GGTGCCGATCCTCAGGGG 61.867 72.222 0.00 0.00 0.00 4.79
5630 10547 4.554036 GTGCCGATCCTCAGGGGC 62.554 72.222 2.49 2.49 45.76 5.80
5632 10549 4.554036 GCCGATCCTCAGGGGCAC 62.554 72.222 4.62 0.00 44.91 5.01
5633 10550 3.083349 CCGATCCTCAGGGGCACA 61.083 66.667 0.00 0.00 34.39 4.57
5634 10551 2.446848 CCGATCCTCAGGGGCACAT 61.447 63.158 0.00 0.00 34.39 3.21
5635 10552 1.227764 CGATCCTCAGGGGCACATG 60.228 63.158 0.00 0.00 34.39 3.21
5636 10553 1.527844 GATCCTCAGGGGCACATGC 60.528 63.158 0.00 0.00 41.14 4.06
5637 10554 2.274948 GATCCTCAGGGGCACATGCA 62.275 60.000 6.15 0.00 44.36 3.96
5638 10555 2.563013 ATCCTCAGGGGCACATGCAC 62.563 60.000 6.15 0.93 45.53 4.57
5644 10561 2.124570 GGGCACATGCACGGAGAT 60.125 61.111 6.15 0.00 44.36 2.75
5645 10562 2.182842 GGGCACATGCACGGAGATC 61.183 63.158 6.15 0.00 44.36 2.75
5646 10563 1.153289 GGCACATGCACGGAGATCT 60.153 57.895 6.15 0.00 44.36 2.75
5647 10564 1.156645 GGCACATGCACGGAGATCTC 61.157 60.000 14.75 14.75 44.36 2.75
5648 10565 1.485838 GCACATGCACGGAGATCTCG 61.486 60.000 16.46 13.62 41.59 4.04
5649 10566 1.227089 ACATGCACGGAGATCTCGC 60.227 57.895 16.46 14.33 0.00 5.03
5650 10567 2.026734 ATGCACGGAGATCTCGCG 59.973 61.111 23.55 23.55 0.00 5.87
5651 10568 2.481471 ATGCACGGAGATCTCGCGA 61.481 57.895 28.76 9.26 0.00 5.87
5652 10569 2.652496 GCACGGAGATCTCGCGAC 60.652 66.667 28.76 19.87 0.00 5.19
5653 10570 3.102985 CACGGAGATCTCGCGACT 58.897 61.111 28.76 0.00 0.00 4.18
5654 10571 1.297967 CACGGAGATCTCGCGACTG 60.298 63.158 28.76 18.55 0.00 3.51
5655 10572 2.329690 CGGAGATCTCGCGACTGG 59.670 66.667 21.82 0.00 0.00 4.00
5656 10573 2.026879 GGAGATCTCGCGACTGGC 59.973 66.667 16.46 0.00 38.69 4.85
5657 10574 2.775856 GGAGATCTCGCGACTGGCA 61.776 63.158 16.46 0.00 43.84 4.92
5658 10575 1.361993 GAGATCTCGCGACTGGCAT 59.638 57.895 3.71 0.00 43.84 4.40
5659 10576 0.662970 GAGATCTCGCGACTGGCATC 60.663 60.000 3.71 1.92 43.84 3.91
5660 10577 2.013483 GATCTCGCGACTGGCATCG 61.013 63.158 3.71 12.80 43.84 3.84
5661 10578 2.393989 GATCTCGCGACTGGCATCGA 62.394 60.000 18.84 0.00 45.13 3.59
5662 10579 2.669808 ATCTCGCGACTGGCATCGAC 62.670 60.000 18.84 11.22 45.13 4.20
5663 10580 3.683587 CTCGCGACTGGCATCGACA 62.684 63.158 18.84 6.87 45.13 4.35
5664 10581 2.809174 CGCGACTGGCATCGACAA 60.809 61.111 18.84 0.00 45.13 3.18
5665 10582 2.792290 CGCGACTGGCATCGACAAG 61.792 63.158 18.84 6.76 45.13 3.16
5666 10583 2.456119 GCGACTGGCATCGACAAGG 61.456 63.158 18.84 0.00 45.13 3.61
5667 10584 2.456119 CGACTGGCATCGACAAGGC 61.456 63.158 12.05 0.00 45.13 4.35
5671 10588 3.190878 GGCATCGACAAGGCCAAG 58.809 61.111 5.01 0.00 46.92 3.61
5672 10589 2.486966 GCATCGACAAGGCCAAGC 59.513 61.111 5.01 0.00 0.00 4.01
5673 10590 2.042831 GCATCGACAAGGCCAAGCT 61.043 57.895 5.01 0.00 0.00 3.74
5684 10601 4.445699 CCAAGCTGGCTCGGATAC 57.554 61.111 0.00 0.00 0.00 2.24
5689 10606 1.112315 AGCTGGCTCGGATACAGGAG 61.112 60.000 10.01 0.00 32.98 3.69
5697 10614 0.319040 CGGATACAGGAGCGGTGATG 60.319 60.000 0.00 0.00 0.00 3.07
5700 10617 2.369257 ATACAGGAGCGGTGATGGCG 62.369 60.000 0.00 0.00 35.00 5.69
5709 10626 4.796231 GTGATGGCGGCTCGTCGT 62.796 66.667 11.43 0.00 32.50 4.34
5710 10627 4.794439 TGATGGCGGCTCGTCGTG 62.794 66.667 11.43 0.00 32.50 4.35
5719 10636 4.111016 CTCGTCGTGGCAGCGGTA 62.111 66.667 9.05 0.00 0.00 4.02
5720 10637 4.111016 TCGTCGTGGCAGCGGTAG 62.111 66.667 9.05 2.94 0.00 3.18
5772 10704 9.507280 CGATGTAATTTTATGTTTGAGATGCTT 57.493 29.630 0.00 0.00 0.00 3.91
5782 10714 7.935338 ATGTTTGAGATGCTTTGTACTTTTG 57.065 32.000 0.00 0.00 0.00 2.44
5783 10715 5.748152 TGTTTGAGATGCTTTGTACTTTTGC 59.252 36.000 0.00 0.00 0.00 3.68
5784 10716 4.503741 TGAGATGCTTTGTACTTTTGCC 57.496 40.909 0.00 0.00 0.00 4.52
5785 10717 3.058293 TGAGATGCTTTGTACTTTTGCCG 60.058 43.478 0.00 0.00 0.00 5.69
5786 10718 2.228822 AGATGCTTTGTACTTTTGCCGG 59.771 45.455 0.00 0.00 0.00 6.13
5787 10719 1.681538 TGCTTTGTACTTTTGCCGGA 58.318 45.000 5.05 0.00 0.00 5.14
5788 10720 2.025155 TGCTTTGTACTTTTGCCGGAA 58.975 42.857 5.05 0.00 0.00 4.30
5789 10721 2.427453 TGCTTTGTACTTTTGCCGGAAA 59.573 40.909 5.05 0.00 0.00 3.13
5790 10722 3.119101 TGCTTTGTACTTTTGCCGGAAAA 60.119 39.130 5.05 3.64 32.44 2.29
5791 10723 3.866327 GCTTTGTACTTTTGCCGGAAAAA 59.134 39.130 19.47 19.47 33.04 1.94
5811 10743 4.766404 AAAAGATGCTTTGTACTTCCGG 57.234 40.909 0.00 0.00 0.00 5.14
5812 10744 1.739067 AGATGCTTTGTACTTCCGGC 58.261 50.000 0.00 0.00 0.00 6.13
5813 10745 0.373716 GATGCTTTGTACTTCCGGCG 59.626 55.000 0.00 0.00 0.00 6.46
5814 10746 0.036765 ATGCTTTGTACTTCCGGCGA 60.037 50.000 9.30 0.00 0.00 5.54
5815 10747 0.249953 TGCTTTGTACTTCCGGCGAA 60.250 50.000 9.30 0.00 0.00 4.70
5816 10748 0.165295 GCTTTGTACTTCCGGCGAAC 59.835 55.000 9.30 0.00 0.00 3.95
5817 10749 1.792006 CTTTGTACTTCCGGCGAACT 58.208 50.000 9.30 0.00 0.00 3.01
5818 10750 1.725164 CTTTGTACTTCCGGCGAACTC 59.275 52.381 9.30 0.00 0.00 3.01
5819 10751 0.963962 TTGTACTTCCGGCGAACTCT 59.036 50.000 9.30 0.00 0.00 3.24
5820 10752 0.242825 TGTACTTCCGGCGAACTCTG 59.757 55.000 9.30 0.00 0.00 3.35
5821 10753 0.524862 GTACTTCCGGCGAACTCTGA 59.475 55.000 9.30 0.00 0.00 3.27
5822 10754 1.068055 GTACTTCCGGCGAACTCTGAA 60.068 52.381 9.30 0.48 0.00 3.02
5823 10755 0.391597 ACTTCCGGCGAACTCTGAAA 59.608 50.000 9.30 0.00 0.00 2.69
5824 10756 1.002087 ACTTCCGGCGAACTCTGAAAT 59.998 47.619 9.30 0.00 0.00 2.17
5825 10757 2.232941 ACTTCCGGCGAACTCTGAAATA 59.767 45.455 9.30 0.00 0.00 1.40
5826 10758 2.579207 TCCGGCGAACTCTGAAATAG 57.421 50.000 9.30 0.00 0.00 1.73
5827 10759 2.097036 TCCGGCGAACTCTGAAATAGA 58.903 47.619 9.30 0.00 0.00 1.98
5828 10760 2.693591 TCCGGCGAACTCTGAAATAGAT 59.306 45.455 9.30 0.00 34.21 1.98
5829 10761 2.797156 CCGGCGAACTCTGAAATAGATG 59.203 50.000 9.30 0.00 34.21 2.90
5830 10762 3.448686 CGGCGAACTCTGAAATAGATGT 58.551 45.455 0.00 0.00 34.21 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 72 7.755373 TGACATGTTGCGTCTAAGCTATATATC 59.245 37.037 0.00 0.00 38.13 1.63
161 167 7.669722 TCCTGACTAATAAAGCCAAAATGAAGT 59.330 33.333 0.00 0.00 0.00 3.01
162 168 7.970614 GTCCTGACTAATAAAGCCAAAATGAAG 59.029 37.037 0.00 0.00 0.00 3.02
269 275 6.127869 CGTCGGAGAAATGGATGTATCTAGAT 60.128 42.308 10.73 10.73 39.69 1.98
458 464 6.734104 AGAGTTCTGTAAAGAATGCACATC 57.266 37.500 0.00 0.00 0.00 3.06
500 506 7.445096 TGTGGTGGATGATTGCATATAACTAAG 59.555 37.037 0.00 0.00 34.11 2.18
529 535 2.656560 ACTTGCAGTCGAGTGATACC 57.343 50.000 24.34 6.54 35.64 2.73
548 554 4.202233 TGAGCAGCATCAAACCAATCAAAA 60.202 37.500 0.00 0.00 0.00 2.44
584 593 5.451798 GCACCATGTTTCAAGAAAAGGAAGA 60.452 40.000 13.49 0.00 31.33 2.87
766 2071 2.975799 GCACGTCTCCGCCCAAAA 60.976 61.111 0.00 0.00 37.70 2.44
822 2127 2.934553 GTCATACTTCCCCTGCGTAAAC 59.065 50.000 0.00 0.00 0.00 2.01
831 2136 2.558378 GTAAAGCGGTCATACTTCCCC 58.442 52.381 0.00 0.00 0.00 4.81
833 2138 2.558378 GGGTAAAGCGGTCATACTTCC 58.442 52.381 9.49 1.96 0.00 3.46
834 2139 2.169978 AGGGGTAAAGCGGTCATACTTC 59.830 50.000 9.49 4.28 0.00 3.01
863 2168 2.603560 CAGAAACGTCTTTAGATCGGGC 59.396 50.000 0.00 0.00 28.78 6.13
864 2169 2.603560 GCAGAAACGTCTTTAGATCGGG 59.396 50.000 0.00 0.00 28.78 5.14
869 5481 3.321111 AGTGAGGCAGAAACGTCTTTAGA 59.679 43.478 0.00 0.00 28.78 2.10
889 5501 1.553704 GATTTAGGTCCACCGGTCAGT 59.446 52.381 2.59 0.00 42.08 3.41
905 5517 2.736670 AGGCAGGGATTTAGCGATTT 57.263 45.000 0.00 0.00 0.00 2.17
906 5518 2.224548 GGTAGGCAGGGATTTAGCGATT 60.225 50.000 0.00 0.00 0.00 3.34
907 5519 1.348036 GGTAGGCAGGGATTTAGCGAT 59.652 52.381 0.00 0.00 0.00 4.58
908 5520 0.756903 GGTAGGCAGGGATTTAGCGA 59.243 55.000 0.00 0.00 0.00 4.93
909 5521 0.250338 GGGTAGGCAGGGATTTAGCG 60.250 60.000 0.00 0.00 0.00 4.26
910 5522 0.110678 GGGGTAGGCAGGGATTTAGC 59.889 60.000 0.00 0.00 0.00 3.09
911 5523 0.396811 CGGGGTAGGCAGGGATTTAG 59.603 60.000 0.00 0.00 0.00 1.85
912 5524 1.702022 GCGGGGTAGGCAGGGATTTA 61.702 60.000 0.00 0.00 0.00 1.40
952 5564 2.359230 GCTCCACCCTGTCAGTGC 60.359 66.667 0.00 0.00 33.75 4.40
992 5604 3.379445 TGGCGAGGTCTCCGGAAC 61.379 66.667 5.23 6.92 0.00 3.62
993 5605 3.379445 GTGGCGAGGTCTCCGGAA 61.379 66.667 5.23 0.00 0.00 4.30
1110 5727 2.641321 GGGGTAGGTTGGTTGACTAGTT 59.359 50.000 0.00 0.00 0.00 2.24
1112 5729 1.558294 GGGGGTAGGTTGGTTGACTAG 59.442 57.143 0.00 0.00 0.00 2.57
1162 5779 1.792949 CGGAGCTCCATATTTGTACGC 59.207 52.381 31.67 0.53 35.14 4.42
1283 5900 4.019867 CGTAGAAATTCGCGGATGAAAAC 58.980 43.478 6.13 0.00 0.00 2.43
1297 5914 3.486263 GCCGTGCTGCGTAGAAAT 58.514 55.556 4.08 0.00 39.32 2.17
1456 6075 2.350895 CCATCAGGGCGGAACACA 59.649 61.111 0.00 0.00 0.00 3.72
1473 6092 3.130633 TGTCATACTTGTATGATGCCGC 58.869 45.455 21.57 11.89 38.55 6.53
1490 6109 2.280524 CGCCGGGTCAAGTTGTCA 60.281 61.111 2.18 0.00 0.00 3.58
1492 6111 4.250305 AGCGCCGGGTCAAGTTGT 62.250 61.111 2.29 0.00 0.00 3.32
1526 6145 0.723459 GCTGGCGTAAACGAAAACGG 60.723 55.000 6.71 0.00 43.02 4.44
1613 6358 2.549349 GCAATGCCAATGAATCCCCATC 60.549 50.000 0.00 0.00 0.00 3.51
1627 6372 2.094752 ACAATAGAAACACCGCAATGCC 60.095 45.455 0.00 0.00 0.00 4.40
1734 6493 7.707624 TCAATTGGATTGTAGCAATCTTTCT 57.292 32.000 17.79 2.94 41.02 2.52
1781 6542 6.211184 TGGTCTTGTTTATTTACCTCCTCGTA 59.789 38.462 0.00 0.00 0.00 3.43
1804 6565 7.103641 ACAGTGATAGTACTACACCAATTTGG 58.896 38.462 21.71 14.02 45.02 3.28
1805 6566 9.817809 ATACAGTGATAGTACTACACCAATTTG 57.182 33.333 21.71 17.47 35.47 2.32
1810 6571 7.344134 ACTGATACAGTGATAGTACTACACCA 58.656 38.462 21.71 12.13 43.63 4.17
2126 6890 1.135402 GCAGATAAACAAACCTGGCCG 60.135 52.381 0.00 0.00 0.00 6.13
2145 6909 0.607489 TTCTTCAAGGCAGAGCAGGC 60.607 55.000 0.00 0.00 0.00 4.85
2203 6967 6.038356 CCAACATATCTGAAATCAACAAGGC 58.962 40.000 0.00 0.00 0.00 4.35
2225 6989 0.383949 GGAGCAAACGAAAACAGCCA 59.616 50.000 0.00 0.00 0.00 4.75
2231 6995 5.694006 CCAACAAATATGGAGCAAACGAAAA 59.306 36.000 0.00 0.00 40.56 2.29
2261 7025 4.266502 GCACGTTTTACAAGCATGTTTGAA 59.733 37.500 26.57 14.17 41.05 2.69
2264 7028 3.775202 TGCACGTTTTACAAGCATGTTT 58.225 36.364 0.00 0.00 41.05 2.83
2331 7095 1.540707 TCGGGGCGAAAAACAATTACC 59.459 47.619 0.00 0.00 31.06 2.85
2504 7268 4.096984 GCACATAACCCATGAGAAAGGAAG 59.903 45.833 0.00 0.00 38.10 3.46
2505 7269 4.016444 GCACATAACCCATGAGAAAGGAA 58.984 43.478 0.00 0.00 38.10 3.36
2783 7549 4.615949 CGGTGATATTCTTCCTCAGTCAG 58.384 47.826 0.00 0.00 0.00 3.51
2833 7599 6.254157 CCGAAGCATAATTTCCAATTGTCTTG 59.746 38.462 4.43 0.00 0.00 3.02
2987 7754 0.883833 GGCAGCACAACAGTAGCATT 59.116 50.000 0.00 0.00 0.00 3.56
3006 7773 7.116662 TGCAAAATTAGAGCTTAAATGCACTTG 59.883 33.333 15.03 9.75 36.46 3.16
3017 7784 7.446625 CCACTATCCTATGCAAAATTAGAGCTT 59.553 37.037 0.00 0.00 0.00 3.74
3136 7903 1.985473 AGTGCAAAGCATCAGGAACA 58.015 45.000 0.00 0.00 41.91 3.18
3326 8093 6.839124 TTTCATAGATCCACTTGCAAACAT 57.161 33.333 0.00 0.00 0.00 2.71
3327 8094 6.040278 TGTTTTCATAGATCCACTTGCAAACA 59.960 34.615 0.00 7.89 34.48 2.83
3328 8095 6.446318 TGTTTTCATAGATCCACTTGCAAAC 58.554 36.000 0.00 0.00 31.43 2.93
3371 8138 5.971202 CAGTGAAATCAACGGCATTAATACC 59.029 40.000 0.00 0.00 0.00 2.73
3378 8145 2.503331 TGTCAGTGAAATCAACGGCAT 58.497 42.857 0.00 0.00 0.00 4.40
3400 8167 1.760192 GCAAATGCTCCCAGACATCT 58.240 50.000 0.00 0.00 38.21 2.90
3408 8175 2.596904 TAGACTACGCAAATGCTCCC 57.403 50.000 3.63 0.00 39.32 4.30
3411 8178 3.710326 TCGATAGACTACGCAAATGCT 57.290 42.857 3.63 0.00 42.67 3.79
3429 8196 4.213270 TCTGCACCTTGTTCAGTTATTTCG 59.787 41.667 0.00 0.00 29.55 3.46
3434 8201 2.813754 GCATCTGCACCTTGTTCAGTTA 59.186 45.455 0.00 0.00 41.59 2.24
3447 8215 8.373019 TCAGGTGATGATATTCTGCATCTGCA 62.373 42.308 4.58 4.58 40.19 4.41
3505 8273 2.082231 CAGTTTGGAGCAGTCATGGAG 58.918 52.381 0.00 0.00 0.00 3.86
3639 8408 4.292186 TCTTCTTGTGATTCCAGGAAGG 57.708 45.455 8.20 0.00 44.35 3.46
3669 8438 2.094597 TCCAAGATTGCTGGCAATTTCG 60.095 45.455 19.70 11.68 45.50 3.46
3679 8448 5.574188 AGTTACCTGAATTCCAAGATTGCT 58.426 37.500 2.27 0.00 0.00 3.91
3681 8450 7.452880 TTGAGTTACCTGAATTCCAAGATTG 57.547 36.000 2.27 0.00 0.00 2.67
3693 8462 3.650942 ACATCCCTGTTTGAGTTACCTGA 59.349 43.478 0.00 0.00 28.70 3.86
3722 8491 4.669206 ACATAGATGGTCTGAGCAGAAG 57.331 45.455 15.33 5.98 39.48 2.85
3723 8492 4.038522 GCTACATAGATGGTCTGAGCAGAA 59.961 45.833 15.33 3.66 39.48 3.02
3726 8495 3.299503 TGCTACATAGATGGTCTGAGCA 58.700 45.455 12.41 12.41 36.39 4.26
3729 8498 5.675684 TTGTTGCTACATAGATGGTCTGA 57.324 39.130 0.81 0.00 33.44 3.27
3730 8499 7.874528 TCATATTGTTGCTACATAGATGGTCTG 59.125 37.037 0.81 0.00 33.44 3.51
3734 8503 8.880750 CATCTCATATTGTTGCTACATAGATGG 58.119 37.037 18.74 11.07 33.44 3.51
3743 8512 8.141268 TCGTATTCACATCTCATATTGTTGCTA 58.859 33.333 0.00 0.00 0.00 3.49
3760 8529 9.490663 CATGTTAAAGGAAAAGATCGTATTCAC 57.509 33.333 9.39 1.79 0.00 3.18
3763 8532 8.575649 ACCATGTTAAAGGAAAAGATCGTATT 57.424 30.769 0.00 0.00 0.00 1.89
3844 8613 4.322273 CCTGTACAGAAGACTTCATCAGCA 60.322 45.833 24.68 8.23 0.00 4.41
3978 8750 4.574828 CCACGACACTTATTATGGAAAGGG 59.425 45.833 0.00 0.00 32.20 3.95
3981 8753 7.513371 AAAACCACGACACTTATTATGGAAA 57.487 32.000 0.00 0.00 0.00 3.13
4034 8806 7.429099 AATACCCCCTCCATTCCATAATAAA 57.571 36.000 0.00 0.00 0.00 1.40
4039 8811 4.320398 TCAAATACCCCCTCCATTCCATA 58.680 43.478 0.00 0.00 0.00 2.74
4053 8825 8.506168 TTTGGTAGTCTCATTGATCAAATACC 57.494 34.615 13.09 12.48 0.00 2.73
4063 8835 5.674525 TGCCTAGATTTGGTAGTCTCATTG 58.325 41.667 0.00 0.00 0.00 2.82
4089 8861 4.989168 CGTAAGCTTATAAACCCTGCCTAG 59.011 45.833 9.88 0.00 0.00 3.02
4168 8940 0.173481 CATGAAATGCTGCTGCTGCT 59.827 50.000 27.67 11.62 37.62 4.24
4292 9064 5.220265 GGCAATTGCAGATTTTGTATGAACG 60.220 40.000 30.32 0.00 44.36 3.95
4335 9107 2.629617 CTGGCAGATCCCACAAGTTTTT 59.370 45.455 9.42 0.00 0.00 1.94
4343 9115 1.826921 CATGGCTGGCAGATCCCAC 60.827 63.158 20.86 0.00 0.00 4.61
4448 9220 1.070134 GAGTACAGTTGCTGGGACACA 59.930 52.381 0.00 0.00 35.51 3.72
4466 9238 3.382865 TCTGGATAGCTGTAAGTGCTGAG 59.617 47.826 0.00 0.00 41.32 3.35
4469 9241 4.383552 CCTTTCTGGATAGCTGTAAGTGCT 60.384 45.833 0.00 0.00 40.32 4.40
4561 9333 1.237285 TTTCTTGCCGAGGAGCTTGC 61.237 55.000 0.00 0.00 0.00 4.01
4563 9335 1.239347 GTTTTCTTGCCGAGGAGCTT 58.761 50.000 0.00 0.00 0.00 3.74
4627 9400 6.934645 CACAGGGAAATTGTTCTGTTCTAGTA 59.065 38.462 5.44 0.00 38.27 1.82
4628 9401 5.765182 CACAGGGAAATTGTTCTGTTCTAGT 59.235 40.000 5.44 0.00 38.27 2.57
4629 9402 5.997746 TCACAGGGAAATTGTTCTGTTCTAG 59.002 40.000 5.44 0.00 38.27 2.43
4635 9408 5.972107 ATCTTCACAGGGAAATTGTTCTG 57.028 39.130 0.00 0.00 34.44 3.02
4744 9521 1.486726 GTGTAATCAGTCCTCCTGGGG 59.513 57.143 0.00 0.00 41.83 4.96
4849 9628 6.989169 ACATCAGACATAAAAGAGATAGGTGC 59.011 38.462 0.00 0.00 0.00 5.01
4873 9652 4.272504 CCCGTTGTCCATATCAACACATAC 59.727 45.833 8.98 0.00 43.40 2.39
4875 9654 3.278574 CCCGTTGTCCATATCAACACAT 58.721 45.455 8.98 0.00 43.40 3.21
4960 9756 1.486310 AGCGTAAATGAGATGCAGGGA 59.514 47.619 0.00 0.00 0.00 4.20
5013 9810 4.617520 TGCTGTTGCGCCGAGGAA 62.618 61.111 4.18 0.00 43.34 3.36
5021 9818 4.029186 ATGGCGTGTGCTGTTGCG 62.029 61.111 0.00 0.00 43.34 4.85
5294 10108 5.291128 ACGCGTGAAAGTATTTATCTGAAGG 59.709 40.000 12.93 0.00 39.27 3.46
5351 10165 9.516788 AAACTACTAAGGAATAGGAGGGTAAAT 57.483 33.333 0.17 0.00 45.67 1.40
5355 10169 7.660169 ACTAAACTACTAAGGAATAGGAGGGT 58.340 38.462 0.17 0.00 45.67 4.34
5364 10178 8.588472 GGGTACTCAAACTAAACTACTAAGGAA 58.412 37.037 0.00 0.00 0.00 3.36
5365 10179 7.729881 TGGGTACTCAAACTAAACTACTAAGGA 59.270 37.037 0.00 0.00 0.00 3.36
5366 10180 7.899973 TGGGTACTCAAACTAAACTACTAAGG 58.100 38.462 0.00 0.00 0.00 2.69
5380 10284 1.003839 CGCCTGCTGGGTACTCAAA 60.004 57.895 12.06 0.00 37.43 2.69
5383 10287 1.321074 ACTACGCCTGCTGGGTACTC 61.321 60.000 12.06 0.00 41.04 2.59
5384 10288 1.305046 ACTACGCCTGCTGGGTACT 60.305 57.895 12.06 0.00 41.04 2.73
5385 10289 1.153628 CACTACGCCTGCTGGGTAC 60.154 63.158 12.06 0.00 41.04 3.34
5386 10290 3.014085 GCACTACGCCTGCTGGGTA 62.014 63.158 12.06 10.51 41.04 3.69
5387 10291 4.394712 GCACTACGCCTGCTGGGT 62.395 66.667 12.06 9.93 43.48 4.51
5388 10292 4.087892 AGCACTACGCCTGCTGGG 62.088 66.667 12.06 4.29 43.54 4.45
5389 10293 2.510238 GAGCACTACGCCTGCTGG 60.510 66.667 5.03 5.03 45.23 4.85
5390 10294 2.882777 CGAGCACTACGCCTGCTG 60.883 66.667 6.79 0.00 45.23 4.41
5397 10301 3.900892 ATCCGCCCGAGCACTACG 61.901 66.667 0.00 0.00 39.83 3.51
5398 10302 2.279517 CATCCGCCCGAGCACTAC 60.280 66.667 0.00 0.00 39.83 2.73
5399 10303 3.536917 CCATCCGCCCGAGCACTA 61.537 66.667 0.00 0.00 39.83 2.74
5417 10328 3.312736 AAACTTGAAGAAGAAGCCCCA 57.687 42.857 0.00 0.00 32.98 4.96
5431 10342 3.123050 CAAAGCCCGGAAGAAAAACTTG 58.877 45.455 0.73 0.00 39.13 3.16
5432 10343 3.028130 TCAAAGCCCGGAAGAAAAACTT 58.972 40.909 0.73 0.00 42.03 2.66
5440 10351 1.755179 ACATGATCAAAGCCCGGAAG 58.245 50.000 0.73 0.00 0.00 3.46
5447 10358 5.227238 AGATGAACGAACATGATCAAAGC 57.773 39.130 0.00 0.00 0.00 3.51
5448 10359 7.276438 TGTCTAGATGAACGAACATGATCAAAG 59.724 37.037 0.00 0.00 0.00 2.77
5451 10362 6.207691 TGTCTAGATGAACGAACATGATCA 57.792 37.500 0.00 0.00 0.00 2.92
5452 10363 8.079203 ACTATGTCTAGATGAACGAACATGATC 58.921 37.037 0.00 0.00 0.00 2.92
5457 10374 5.583457 TCGACTATGTCTAGATGAACGAACA 59.417 40.000 0.00 0.00 0.00 3.18
5464 10381 5.919755 ACTCTGTCGACTATGTCTAGATGA 58.080 41.667 17.92 0.00 0.00 2.92
5470 10387 2.678836 CGGAACTCTGTCGACTATGTCT 59.321 50.000 17.92 0.00 0.00 3.41
5490 10407 1.082117 GGTGACAGTAATCCACGCCG 61.082 60.000 0.00 0.00 0.00 6.46
5491 10408 0.249398 AGGTGACAGTAATCCACGCC 59.751 55.000 0.00 0.00 0.00 5.68
5496 10413 2.092914 CCCAAGGAGGTGACAGTAATCC 60.093 54.545 0.00 0.00 34.66 3.01
5501 10418 2.529744 GCCCCAAGGAGGTGACAGT 61.530 63.158 0.00 0.00 34.66 3.55
5502 10419 2.352805 GCCCCAAGGAGGTGACAG 59.647 66.667 0.00 0.00 34.66 3.51
5526 10443 3.431766 GCCACATGACGAGTAACCCTAAT 60.432 47.826 0.00 0.00 0.00 1.73
5535 10452 2.479566 AATCTTGCCACATGACGAGT 57.520 45.000 0.00 0.00 0.00 4.18
5547 10464 4.634184 AGCATCTGACATCAAATCTTGC 57.366 40.909 0.00 0.00 0.00 4.01
5549 10466 6.178324 TCTGAAGCATCTGACATCAAATCTT 58.822 36.000 0.00 0.00 0.00 2.40
5556 10473 7.153315 TGAATAGATCTGAAGCATCTGACATC 58.847 38.462 5.18 0.00 36.50 3.06
5558 10475 6.475596 TGAATAGATCTGAAGCATCTGACA 57.524 37.500 5.18 0.00 36.50 3.58
5564 10481 5.643421 ACCCTTGAATAGATCTGAAGCAT 57.357 39.130 5.18 0.00 0.00 3.79
5583 10500 1.156736 CAGTCGTCACCATTGAACCC 58.843 55.000 0.00 0.00 31.90 4.11
5584 10501 0.517316 GCAGTCGTCACCATTGAACC 59.483 55.000 0.00 0.00 31.90 3.62
5585 10502 0.517316 GGCAGTCGTCACCATTGAAC 59.483 55.000 0.00 0.00 31.90 3.18
5591 10508 4.357947 GAGCGGCAGTCGTCACCA 62.358 66.667 1.45 0.00 41.72 4.17
5594 10511 4.056125 CTGGAGCGGCAGTCGTCA 62.056 66.667 1.45 0.00 41.72 4.35
5605 10522 4.554036 GGATCGGCACCCTGGAGC 62.554 72.222 0.00 0.00 0.00 4.70
5608 10525 3.083349 TGAGGATCGGCACCCTGG 61.083 66.667 0.00 0.00 38.61 4.45
5617 10534 1.227764 CATGTGCCCCTGAGGATCG 60.228 63.158 0.00 0.00 38.61 3.69
5619 10536 2.311070 TGCATGTGCCCCTGAGGAT 61.311 57.895 0.00 0.00 41.18 3.24
5623 10540 4.720902 CCGTGCATGTGCCCCTGA 62.721 66.667 4.96 0.00 41.18 3.86
5624 10541 4.720902 TCCGTGCATGTGCCCCTG 62.721 66.667 4.96 0.00 41.18 4.45
5625 10542 4.415150 CTCCGTGCATGTGCCCCT 62.415 66.667 4.96 0.00 41.18 4.79
5626 10543 3.704231 ATCTCCGTGCATGTGCCCC 62.704 63.158 4.96 0.00 41.18 5.80
5627 10544 2.124570 ATCTCCGTGCATGTGCCC 60.125 61.111 4.96 0.00 41.18 5.36
5628 10545 1.153289 AGATCTCCGTGCATGTGCC 60.153 57.895 4.96 0.00 41.18 5.01
5629 10546 1.485838 CGAGATCTCCGTGCATGTGC 61.486 60.000 17.13 0.00 42.50 4.57
5630 10547 1.485838 GCGAGATCTCCGTGCATGTG 61.486 60.000 17.13 0.84 0.00 3.21
5631 10548 1.227089 GCGAGATCTCCGTGCATGT 60.227 57.895 17.13 0.00 0.00 3.21
5632 10549 2.298629 CGCGAGATCTCCGTGCATG 61.299 63.158 17.13 0.00 0.00 4.06
5633 10550 2.026734 CGCGAGATCTCCGTGCAT 59.973 61.111 17.13 0.00 0.00 3.96
5634 10551 3.131478 TCGCGAGATCTCCGTGCA 61.131 61.111 23.84 9.95 37.44 4.57
5635 10552 2.652496 GTCGCGAGATCTCCGTGC 60.652 66.667 23.84 17.78 45.19 5.34
5636 10553 1.297967 CAGTCGCGAGATCTCCGTG 60.298 63.158 23.84 20.42 45.19 4.94
5637 10554 2.473760 CCAGTCGCGAGATCTCCGT 61.474 63.158 23.84 10.48 45.19 4.69
5638 10555 2.329690 CCAGTCGCGAGATCTCCG 59.670 66.667 10.24 19.34 45.19 4.63
5639 10556 2.026879 GCCAGTCGCGAGATCTCC 59.973 66.667 10.24 8.89 45.19 3.71
5640 10557 0.662970 GATGCCAGTCGCGAGATCTC 60.663 60.000 10.24 13.05 45.19 2.75
5641 10558 1.361993 GATGCCAGTCGCGAGATCT 59.638 57.895 10.24 0.00 45.19 2.75
5642 10559 2.013483 CGATGCCAGTCGCGAGATC 61.013 63.158 10.24 5.52 45.19 2.75
5643 10560 2.026734 CGATGCCAGTCGCGAGAT 59.973 61.111 10.24 0.00 45.19 2.75
5644 10561 3.131478 TCGATGCCAGTCGCGAGA 61.131 61.111 10.24 0.00 42.08 4.04
5645 10562 2.951745 GTCGATGCCAGTCGCGAG 60.952 66.667 10.24 0.00 42.08 5.03
5646 10563 3.275832 TTGTCGATGCCAGTCGCGA 62.276 57.895 3.71 3.71 42.08 5.87
5647 10564 2.792290 CTTGTCGATGCCAGTCGCG 61.792 63.158 0.00 0.00 42.08 5.87
5648 10565 2.456119 CCTTGTCGATGCCAGTCGC 61.456 63.158 0.00 0.00 41.22 5.19
5649 10566 2.456119 GCCTTGTCGATGCCAGTCG 61.456 63.158 0.00 0.00 42.74 4.18
5650 10567 2.109126 GGCCTTGTCGATGCCAGTC 61.109 63.158 11.79 0.00 44.70 3.51
5651 10568 2.045926 GGCCTTGTCGATGCCAGT 60.046 61.111 11.79 0.00 44.70 4.00
5654 10571 3.056313 GCTTGGCCTTGTCGATGCC 62.056 63.158 3.32 10.26 45.56 4.40
5655 10572 2.042831 AGCTTGGCCTTGTCGATGC 61.043 57.895 3.32 0.00 0.00 3.91
5656 10573 1.651240 CCAGCTTGGCCTTGTCGATG 61.651 60.000 3.32 0.00 0.00 3.84
5657 10574 1.377725 CCAGCTTGGCCTTGTCGAT 60.378 57.895 3.32 0.00 0.00 3.59
5658 10575 2.032528 CCAGCTTGGCCTTGTCGA 59.967 61.111 3.32 0.00 0.00 4.20
5667 10584 0.531532 CTGTATCCGAGCCAGCTTGG 60.532 60.000 18.49 18.49 46.58 3.61
5668 10585 0.531532 CCTGTATCCGAGCCAGCTTG 60.532 60.000 0.00 0.00 0.00 4.01
5669 10586 0.687757 TCCTGTATCCGAGCCAGCTT 60.688 55.000 0.00 0.00 0.00 3.74
5670 10587 1.075970 TCCTGTATCCGAGCCAGCT 60.076 57.895 0.00 0.00 0.00 4.24
5671 10588 1.365633 CTCCTGTATCCGAGCCAGC 59.634 63.158 0.00 0.00 0.00 4.85
5672 10589 1.365633 GCTCCTGTATCCGAGCCAG 59.634 63.158 0.00 0.00 44.70 4.85
5673 10590 3.538614 GCTCCTGTATCCGAGCCA 58.461 61.111 0.00 0.00 44.70 4.75
5678 10595 0.319040 CATCACCGCTCCTGTATCCG 60.319 60.000 0.00 0.00 0.00 4.18
5683 10600 4.457496 CGCCATCACCGCTCCTGT 62.457 66.667 0.00 0.00 0.00 4.00
5703 10620 4.111016 CTACCGCTGCCACGACGA 62.111 66.667 0.00 0.00 34.06 4.20
5707 10624 4.873129 ATCGCTACCGCTGCCACG 62.873 66.667 0.00 0.00 0.00 4.94
5709 10626 2.511373 CAATCGCTACCGCTGCCA 60.511 61.111 0.00 0.00 0.00 4.92
5710 10627 1.644786 AAACAATCGCTACCGCTGCC 61.645 55.000 0.00 0.00 0.00 4.85
5712 10629 0.096976 CCAAACAATCGCTACCGCTG 59.903 55.000 0.00 0.00 0.00 5.18
5713 10630 0.321298 ACCAAACAATCGCTACCGCT 60.321 50.000 0.00 0.00 0.00 5.52
5714 10631 0.179200 CACCAAACAATCGCTACCGC 60.179 55.000 0.00 0.00 0.00 5.68
5716 10633 1.467342 GACCACCAAACAATCGCTACC 59.533 52.381 0.00 0.00 0.00 3.18
5717 10634 2.423577 AGACCACCAAACAATCGCTAC 58.576 47.619 0.00 0.00 0.00 3.58
5719 10636 1.981256 AAGACCACCAAACAATCGCT 58.019 45.000 0.00 0.00 0.00 4.93
5720 10637 3.071479 TCTAAGACCACCAAACAATCGC 58.929 45.455 0.00 0.00 0.00 4.58
5721 10638 5.643777 AGATTCTAAGACCACCAAACAATCG 59.356 40.000 0.00 0.00 0.00 3.34
5723 10640 5.643777 CGAGATTCTAAGACCACCAAACAAT 59.356 40.000 0.00 0.00 0.00 2.71
5724 10641 4.994852 CGAGATTCTAAGACCACCAAACAA 59.005 41.667 0.00 0.00 0.00 2.83
5725 10642 4.282449 TCGAGATTCTAAGACCACCAAACA 59.718 41.667 0.00 0.00 0.00 2.83
5726 10643 4.817517 TCGAGATTCTAAGACCACCAAAC 58.182 43.478 0.00 0.00 0.00 2.93
5727 10644 5.046591 ACATCGAGATTCTAAGACCACCAAA 60.047 40.000 0.00 0.00 0.00 3.28
5728 10645 4.466370 ACATCGAGATTCTAAGACCACCAA 59.534 41.667 0.00 0.00 0.00 3.67
5758 10686 6.421801 GCAAAAGTACAAAGCATCTCAAACAT 59.578 34.615 0.00 0.00 0.00 2.71
5764 10696 3.492313 CGGCAAAAGTACAAAGCATCTC 58.508 45.455 0.00 0.00 0.00 2.75
5769 10701 2.785713 TTCCGGCAAAAGTACAAAGC 57.214 45.000 0.00 0.00 0.00 3.51
5789 10721 4.558697 GCCGGAAGTACAAAGCATCTTTTT 60.559 41.667 5.05 0.00 0.00 1.94
5790 10722 3.057526 GCCGGAAGTACAAAGCATCTTTT 60.058 43.478 5.05 0.00 0.00 2.27
5791 10723 2.488153 GCCGGAAGTACAAAGCATCTTT 59.512 45.455 5.05 0.00 0.00 2.52
5792 10724 2.084546 GCCGGAAGTACAAAGCATCTT 58.915 47.619 5.05 0.00 0.00 2.40
5793 10725 1.739067 GCCGGAAGTACAAAGCATCT 58.261 50.000 5.05 0.00 0.00 2.90
5794 10726 0.373716 CGCCGGAAGTACAAAGCATC 59.626 55.000 5.05 0.00 0.00 3.91
5795 10727 0.036765 TCGCCGGAAGTACAAAGCAT 60.037 50.000 5.05 0.00 0.00 3.79
5796 10728 0.249953 TTCGCCGGAAGTACAAAGCA 60.250 50.000 5.05 0.00 0.00 3.91
5797 10729 0.165295 GTTCGCCGGAAGTACAAAGC 59.835 55.000 5.05 0.00 31.49 3.51
5798 10730 1.725164 GAGTTCGCCGGAAGTACAAAG 59.275 52.381 5.05 0.00 35.96 2.77
5799 10731 1.342174 AGAGTTCGCCGGAAGTACAAA 59.658 47.619 5.05 0.00 35.96 2.83
5800 10732 0.963962 AGAGTTCGCCGGAAGTACAA 59.036 50.000 5.05 0.00 35.96 2.41
5801 10733 0.242825 CAGAGTTCGCCGGAAGTACA 59.757 55.000 5.05 0.00 35.96 2.90
5802 10734 0.524862 TCAGAGTTCGCCGGAAGTAC 59.475 55.000 5.05 1.82 35.96 2.73
5803 10735 1.250328 TTCAGAGTTCGCCGGAAGTA 58.750 50.000 5.05 0.00 35.96 2.24
5804 10736 0.391597 TTTCAGAGTTCGCCGGAAGT 59.608 50.000 5.05 0.00 38.53 3.01
5805 10737 1.726853 ATTTCAGAGTTCGCCGGAAG 58.273 50.000 5.05 0.00 31.49 3.46
5806 10738 2.494471 TCTATTTCAGAGTTCGCCGGAA 59.506 45.455 5.05 0.00 0.00 4.30
5807 10739 2.097036 TCTATTTCAGAGTTCGCCGGA 58.903 47.619 5.05 0.00 0.00 5.14
5808 10740 2.579207 TCTATTTCAGAGTTCGCCGG 57.421 50.000 0.00 0.00 0.00 6.13
5809 10741 3.448686 ACATCTATTTCAGAGTTCGCCG 58.551 45.455 0.00 0.00 36.48 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.