Multiple sequence alignment - TraesCS2B01G425200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G425200 chr2B 100.000 3351 0 0 1 3351 611069188 611065838 0.000000e+00 6189.0
1 TraesCS2B01G425200 chr2B 90.863 197 11 5 3157 3351 612071499 612071690 1.190000e-64 257.0
2 TraesCS2B01G425200 chr2B 90.863 197 11 5 3157 3351 612077815 612078006 1.190000e-64 257.0
3 TraesCS2B01G425200 chr2B 79.878 164 27 6 1793 1952 770183877 770184038 7.600000e-22 115.0
4 TraesCS2B01G425200 chr2B 100.000 36 0 0 2750 2785 612067527 612067562 2.160000e-07 67.6
5 TraesCS2B01G425200 chr2A 92.063 2457 132 26 510 2925 662972023 662969589 0.000000e+00 3398.0
6 TraesCS2B01G425200 chr2A 87.597 516 35 12 22 512 662972566 662972055 3.750000e-159 571.0
7 TraesCS2B01G425200 chr2A 87.403 516 36 12 22 512 663304338 663303827 1.750000e-157 566.0
8 TraesCS2B01G425200 chr2A 87.760 433 26 15 2922 3351 662969457 662969049 6.500000e-132 481.0
9 TraesCS2B01G425200 chr2D 94.658 1928 54 6 22 1908 518813342 518811423 0.000000e+00 2944.0
10 TraesCS2B01G425200 chr2D 88.143 953 65 34 1970 2882 518811424 518810480 0.000000e+00 1090.0
11 TraesCS2B01G425200 chr2D 93.571 420 22 3 2935 3351 518810336 518809919 3.670000e-174 621.0
12 TraesCS2B01G425200 chr2D 82.562 281 46 3 22 302 107012607 107012330 9.290000e-61 244.0
13 TraesCS2B01G425200 chr2D 100.000 36 0 0 2750 2785 520042099 520042134 2.160000e-07 67.6
14 TraesCS2B01G425200 chr6A 84.512 297 42 4 22 316 564199889 564200183 1.180000e-74 291.0
15 TraesCS2B01G425200 chr6A 80.000 160 29 3 1795 1952 235028091 235028249 7.600000e-22 115.0
16 TraesCS2B01G425200 chr4D 83.972 287 41 5 22 306 261523918 261523635 1.530000e-68 270.0
17 TraesCS2B01G425200 chr4D 79.755 163 26 6 1793 1952 503842244 503842402 9.830000e-21 111.0
18 TraesCS2B01G425200 chr5D 86.486 222 29 1 85 306 530067134 530067354 3.340000e-60 243.0
19 TraesCS2B01G425200 chr4A 88.384 198 20 3 115 311 616449107 616449302 5.590000e-58 235.0
20 TraesCS2B01G425200 chr6B 79.861 288 52 6 24 309 534012568 534012285 4.380000e-49 206.0
21 TraesCS2B01G425200 chr6D 81.595 163 25 5 1793 1952 181729727 181729567 2.710000e-26 130.0
22 TraesCS2B01G425200 chr1D 80.226 177 29 6 1793 1966 28560184 28560011 9.760000e-26 128.0
23 TraesCS2B01G425200 chr3D 80.864 162 25 6 1795 1952 526937260 526937419 4.540000e-24 122.0
24 TraesCS2B01G425200 chr1B 79.755 163 25 6 1793 1952 517506336 517506493 9.830000e-21 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G425200 chr2B 611065838 611069188 3350 True 6189.000000 6189 100.000 1 3351 1 chr2B.!!$R1 3350
1 TraesCS2B01G425200 chr2A 662969049 662972566 3517 True 1483.333333 3398 89.140 22 3351 3 chr2A.!!$R2 3329
2 TraesCS2B01G425200 chr2A 663303827 663304338 511 True 566.000000 566 87.403 22 512 1 chr2A.!!$R1 490
3 TraesCS2B01G425200 chr2D 518809919 518813342 3423 True 1551.666667 2944 92.124 22 3351 3 chr2D.!!$R2 3329

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
387 444 0.918983 TTTCCCCTTGAGATCGCCAT 59.081 50.0 0.0 0.0 0.0 4.40 F
1038 1143 0.253347 ATGGGAAGGAGGAAGCCAGA 60.253 55.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1251 1357 0.238289 CTGCCAGTGCCAGTTAAACG 59.762 55.0 0.0 0.0 36.33 3.6 R
2584 2737 0.674895 CCCACTTCCACTAGCAGCAC 60.675 60.0 0.0 0.0 0.00 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
285 286 4.807304 CACAGCAGCTTTTTCAGAATTTGT 59.193 37.500 0.00 0.00 0.00 2.83
343 344 3.288290 CCCCTCCCGTCGATCTCG 61.288 72.222 0.00 0.00 41.45 4.04
347 348 2.437895 TCCCGTCGATCTCGCAGT 60.438 61.111 0.00 0.00 39.60 4.40
374 431 2.282180 TCTTGCACCGCTTTCCCC 60.282 61.111 0.00 0.00 0.00 4.81
376 433 1.903404 CTTGCACCGCTTTCCCCTT 60.903 57.895 0.00 0.00 0.00 3.95
387 444 0.918983 TTTCCCCTTGAGATCGCCAT 59.081 50.000 0.00 0.00 0.00 4.40
435 492 1.681327 AGCCTCCGCTTTCTCCGTA 60.681 57.895 0.00 0.00 45.55 4.02
535 626 1.308216 CCTCCCAGACCCCTTCCAT 60.308 63.158 0.00 0.00 0.00 3.41
554 645 4.452251 TCCGAAGCCGCCCTCCTA 62.452 66.667 0.00 0.00 0.00 2.94
782 887 6.203338 GCAACAATCCAATTTTATGCCTATGG 59.797 38.462 0.00 0.00 0.00 2.74
893 998 3.636231 CCAGTGGAGGAACGGCCA 61.636 66.667 1.68 0.00 40.02 5.36
894 999 2.429930 CAGTGGAGGAACGGCCAA 59.570 61.111 2.24 0.00 39.16 4.52
1038 1143 0.253347 ATGGGAAGGAGGAAGCCAGA 60.253 55.000 0.00 0.00 0.00 3.86
1251 1357 2.171448 ACATTCATGCTGGACTACCTCC 59.829 50.000 0.00 0.00 39.97 4.30
1539 1645 6.420008 CCTTTTGTTTCTTCTTGCATTGAGAG 59.580 38.462 0.00 0.00 0.00 3.20
1565 1673 7.362401 GCCTTACACTGTAACTACTAGCAACTA 60.362 40.741 0.00 0.00 0.00 2.24
1566 1674 8.684520 CCTTACACTGTAACTACTAGCAACTAT 58.315 37.037 0.00 0.00 0.00 2.12
1762 1870 5.068987 TGAGCTAAGTTTTTCCAATGCAAGT 59.931 36.000 0.00 0.00 0.00 3.16
1813 1922 2.482336 TGTACAATGCAAGGTGCTTACG 59.518 45.455 9.81 0.00 45.31 3.18
1908 2018 6.567602 AGGCACCTCTTCTGTAGAAATAAT 57.432 37.500 0.00 0.00 33.07 1.28
2179 2331 2.901839 ACCCTTCTGCAAATTCAGCAAT 59.098 40.909 6.93 0.00 42.17 3.56
2201 2353 9.630098 GCAATGAATTCAAGAATCTTAGTTTCA 57.370 29.630 13.09 12.71 0.00 2.69
2332 2484 0.183014 AAGAGAGGCTACGGGATCGA 59.817 55.000 0.00 0.00 40.11 3.59
2347 2499 2.423185 GGATCGATTGTGGTTGCATTCA 59.577 45.455 0.00 0.00 0.00 2.57
2433 2586 6.946009 ACCTCGGATTTATCCTTTTTCTGAAA 59.054 34.615 7.16 0.00 44.93 2.69
2434 2587 7.450323 ACCTCGGATTTATCCTTTTTCTGAAAA 59.550 33.333 11.33 11.33 44.93 2.29
2571 2724 7.964559 CACTGTAATTGAACCATGACTGTAATG 59.035 37.037 0.00 0.00 0.00 1.90
2600 2753 1.205893 GCTAGTGCTGCTAGTGGAAGT 59.794 52.381 14.31 0.00 46.81 3.01
2601 2754 2.886081 CTAGTGCTGCTAGTGGAAGTG 58.114 52.381 0.00 0.00 41.68 3.16
2611 2770 0.474184 AGTGGAAGTGGGTTCTGGTG 59.526 55.000 0.00 0.00 35.25 4.17
2748 2918 0.515564 ACATTGTTGTCGTTAGGCGC 59.484 50.000 0.00 0.00 41.07 6.53
2808 2978 2.824341 CAAAGAAAAGGCTGGCTGATCT 59.176 45.455 3.84 8.78 0.00 2.75
2823 2993 4.474113 GCTGATCTTTGAAGCTTTGTCTG 58.526 43.478 0.00 0.00 34.05 3.51
2834 3004 6.946340 TGAAGCTTTGTCTGGATACTGAATA 58.054 36.000 0.00 0.00 46.86 1.75
2845 3015 6.098838 TCTGGATACTGAATAGCTCACATTGT 59.901 38.462 0.00 0.00 42.08 2.71
2846 3016 6.051074 TGGATACTGAATAGCTCACATTGTG 58.949 40.000 10.64 10.64 37.61 3.33
2855 3025 3.156293 AGCTCACATTGTGGCAATTACA 58.844 40.909 23.29 2.77 34.10 2.41
2882 3052 1.392589 ACACGATTCATGGCCATTCC 58.607 50.000 17.92 4.41 0.00 3.01
2896 3066 5.158141 TGGCCATTCCTTCAGAGTATATCT 58.842 41.667 0.00 0.00 35.36 1.98
2902 3073 6.902771 TTCCTTCAGAGTATATCTACTGCC 57.097 41.667 0.00 0.00 38.33 4.85
2905 3076 6.839134 TCCTTCAGAGTATATCTACTGCCAAA 59.161 38.462 0.00 0.00 38.33 3.28
2910 3081 5.928839 AGAGTATATCTACTGCCAAAATGCG 59.071 40.000 0.00 0.00 38.33 4.73
2925 3096 6.666451 GCCAAAATGCGAAATAAACTTGTACG 60.666 38.462 0.00 0.00 0.00 3.67
2926 3097 6.361214 CCAAAATGCGAAATAAACTTGTACGT 59.639 34.615 0.00 0.00 0.00 3.57
2927 3098 7.534578 CCAAAATGCGAAATAAACTTGTACGTA 59.465 33.333 0.00 0.00 0.00 3.57
2928 3099 9.057365 CAAAATGCGAAATAAACTTGTACGTAT 57.943 29.630 0.00 0.00 0.00 3.06
2933 3104 9.743937 TGCGAAATAAACTTGTACGTATAAAAG 57.256 29.630 6.22 9.47 32.48 2.27
2983 3294 9.643693 CAGCAGACATGTTTCCTTTTAAATAAT 57.356 29.630 0.00 0.00 0.00 1.28
3019 3330 2.039084 CACCAGCTAACCAACTTCTCCT 59.961 50.000 0.00 0.00 0.00 3.69
3053 3364 8.912658 CATTTGAATGAAGATCTCAAACACAAG 58.087 33.333 8.70 0.00 40.74 3.16
3071 3385 2.171635 GCTTCAAGGGTAAGCCGTG 58.828 57.895 0.00 0.00 42.85 4.94
3134 3448 5.078256 CCTACCCGAAATCTAGATAGTGGT 58.922 45.833 5.46 12.40 0.00 4.16
3135 3449 4.939052 ACCCGAAATCTAGATAGTGGTG 57.061 45.455 5.46 5.18 0.00 4.17
3140 3454 6.463049 CCCGAAATCTAGATAGTGGTGTCATT 60.463 42.308 5.46 0.00 0.00 2.57
3237 3551 6.672147 AGCAGAAGTATGATTGAACAACAAC 58.328 36.000 0.00 0.00 41.52 3.32
3245 3560 4.657055 TGATTGAACAACAACGACAACAG 58.343 39.130 0.00 0.00 41.52 3.16
3255 3570 4.569943 ACAACGACAACAGCTCTATCAAT 58.430 39.130 0.00 0.00 0.00 2.57
3260 3575 8.817100 CAACGACAACAGCTCTATCAATTTATA 58.183 33.333 0.00 0.00 0.00 0.98
3273 3588 8.605947 TCTATCAATTTATATACAGCCAGGCTT 58.394 33.333 12.86 6.28 36.40 4.35
3278 3593 9.066892 CAATTTATATACAGCCAGGCTTCTAAA 57.933 33.333 12.86 11.40 36.40 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.858382 GCTAACAACAAAAACAACAAAACCTTT 59.142 29.630 0.00 0.00 0.00 3.11
2 3 7.227711 AGCTAACAACAAAAACAACAAAACCTT 59.772 29.630 0.00 0.00 0.00 3.50
3 4 6.708502 AGCTAACAACAAAAACAACAAAACCT 59.291 30.769 0.00 0.00 0.00 3.50
4 5 6.893759 AGCTAACAACAAAAACAACAAAACC 58.106 32.000 0.00 0.00 0.00 3.27
5 6 9.471742 CATAGCTAACAACAAAAACAACAAAAC 57.528 29.630 0.00 0.00 0.00 2.43
6 7 9.424319 TCATAGCTAACAACAAAAACAACAAAA 57.576 25.926 0.00 0.00 0.00 2.44
7 8 8.988064 TCATAGCTAACAACAAAAACAACAAA 57.012 26.923 0.00 0.00 0.00 2.83
8 9 8.988064 TTCATAGCTAACAACAAAAACAACAA 57.012 26.923 0.00 0.00 0.00 2.83
9 10 9.243637 GATTCATAGCTAACAACAAAAACAACA 57.756 29.630 0.00 0.00 0.00 3.33
10 11 9.243637 TGATTCATAGCTAACAACAAAAACAAC 57.756 29.630 0.00 0.00 0.00 3.32
11 12 9.979578 ATGATTCATAGCTAACAACAAAAACAA 57.020 25.926 0.00 0.00 0.00 2.83
12 13 9.624697 GATGATTCATAGCTAACAACAAAAACA 57.375 29.630 0.00 0.00 0.00 2.83
13 14 9.846248 AGATGATTCATAGCTAACAACAAAAAC 57.154 29.630 0.00 0.00 0.00 2.43
16 17 9.230122 TGAAGATGATTCATAGCTAACAACAAA 57.770 29.630 0.00 0.00 0.00 2.83
17 18 8.791327 TGAAGATGATTCATAGCTAACAACAA 57.209 30.769 0.00 0.00 0.00 2.83
18 19 8.969260 ATGAAGATGATTCATAGCTAACAACA 57.031 30.769 0.00 0.00 37.38 3.33
19 20 9.661187 CAATGAAGATGATTCATAGCTAACAAC 57.339 33.333 0.00 0.00 38.11 3.32
20 21 9.399797 ACAATGAAGATGATTCATAGCTAACAA 57.600 29.630 0.00 0.00 38.11 2.83
285 286 1.234615 GGCTGCGTTTGGTTGAGCTA 61.235 55.000 0.00 0.00 0.00 3.32
343 344 4.443266 AAGAGGGAGCGCGACTGC 62.443 66.667 12.10 12.19 35.62 4.40
347 348 4.742201 GTGCAAGAGGGAGCGCGA 62.742 66.667 12.10 0.00 0.00 5.87
374 431 0.943359 GAGGCGATGGCGATCTCAAG 60.943 60.000 7.15 0.00 41.24 3.02
376 433 2.730733 GAGGCGATGGCGATCTCA 59.269 61.111 7.15 0.00 41.24 3.27
435 492 0.835543 ACTTGGTGGCTCAGAGCTCT 60.836 55.000 21.99 11.45 41.99 4.09
554 645 1.070445 GCTGTGTCACTGCTCCACT 59.930 57.895 23.29 0.00 39.55 4.00
753 858 5.065090 GGCATAAAATTGGATTGTTGCTTCC 59.935 40.000 0.00 0.00 0.00 3.46
782 887 2.416162 GGTGAGCGAGCACTATATAGCC 60.416 54.545 9.78 1.58 38.78 3.93
862 967 0.390472 CACTGGAACGAGGAAGAGGC 60.390 60.000 0.00 0.00 0.00 4.70
863 968 0.247736 CCACTGGAACGAGGAAGAGG 59.752 60.000 0.00 0.00 0.00 3.69
893 998 7.213178 ACCCTTATAAATCCTGACACTGATT 57.787 36.000 0.00 0.00 32.72 2.57
894 999 6.831664 ACCCTTATAAATCCTGACACTGAT 57.168 37.500 0.00 0.00 0.00 2.90
1038 1143 0.555769 TGCCCTCCAAACCTGTCTTT 59.444 50.000 0.00 0.00 0.00 2.52
1251 1357 0.238289 CTGCCAGTGCCAGTTAAACG 59.762 55.000 0.00 0.00 36.33 3.60
1301 1407 5.559770 TCTGGCTATCATGTGACAGAAAAA 58.440 37.500 15.47 0.00 32.60 1.94
1400 1506 2.293122 CAGGCGACAAATTTCCACAGAA 59.707 45.455 0.00 0.00 0.00 3.02
1403 1509 0.958091 CCAGGCGACAAATTTCCACA 59.042 50.000 0.00 0.00 0.00 4.17
1539 1645 5.320549 TGCTAGTAGTTACAGTGTAAGGC 57.679 43.478 16.03 12.83 0.00 4.35
1566 1674 9.276590 CAAGATATTGATGCACCATCTTTAGTA 57.723 33.333 0.00 0.00 41.06 1.82
1589 1697 2.551032 TGCAAGTCATCAAGCAGTCAAG 59.449 45.455 0.00 0.00 32.48 3.02
1612 1720 8.641498 ATTATTACTCAATTGGGCAGAATAGG 57.359 34.615 4.86 0.00 0.00 2.57
1762 1870 7.469456 GCAGGTTTCACCACTTTAGACATAAAA 60.469 37.037 0.00 0.00 41.95 1.52
1813 1922 1.273327 CTCATTTTCACAAGCACCCCC 59.727 52.381 0.00 0.00 0.00 5.40
1908 2018 5.298276 ACCAAATTTTCTTAAGCGTCAGTGA 59.702 36.000 0.00 0.00 0.00 3.41
1956 2066 7.676683 AGTAGATAACTTGGACCATGTACAT 57.323 36.000 13.08 1.41 33.35 2.29
2027 2137 6.872628 AGCTATGCAACATACTAGTACGTA 57.127 37.500 4.31 0.00 0.00 3.57
2028 2138 5.769484 AGCTATGCAACATACTAGTACGT 57.231 39.130 4.31 0.00 0.00 3.57
2029 2139 6.305877 GCTAAGCTATGCAACATACTAGTACG 59.694 42.308 4.31 0.00 0.00 3.67
2196 2348 5.300034 TCATCAACATGGGCATAGATGAAAC 59.700 40.000 0.00 0.00 38.95 2.78
2201 2353 4.395625 CACTCATCAACATGGGCATAGAT 58.604 43.478 0.00 0.00 33.05 1.98
2332 2484 6.045072 AGAAATCATGAATGCAACCACAAT 57.955 33.333 0.00 0.00 0.00 2.71
2347 2499 3.131755 GCAAGCCAAAGCCTAGAAATCAT 59.868 43.478 0.00 0.00 41.25 2.45
2399 2551 5.855045 GGATAAATCCGAGGTACAGTTCAT 58.145 41.667 0.00 0.00 37.19 2.57
2400 2552 5.272283 GGATAAATCCGAGGTACAGTTCA 57.728 43.478 0.00 0.00 37.19 3.18
2433 2586 5.200483 TCCTTTCCACATCAAACAAGACTT 58.800 37.500 0.00 0.00 0.00 3.01
2434 2587 4.792068 TCCTTTCCACATCAAACAAGACT 58.208 39.130 0.00 0.00 0.00 3.24
2584 2737 0.674895 CCCACTTCCACTAGCAGCAC 60.675 60.000 0.00 0.00 0.00 4.40
2596 2749 1.694696 AGAGACACCAGAACCCACTTC 59.305 52.381 0.00 0.00 0.00 3.01
2597 2750 1.807814 AGAGACACCAGAACCCACTT 58.192 50.000 0.00 0.00 0.00 3.16
2598 2751 2.696526 TAGAGACACCAGAACCCACT 57.303 50.000 0.00 0.00 0.00 4.00
2600 2753 4.781775 TTTTTAGAGACACCAGAACCCA 57.218 40.909 0.00 0.00 0.00 4.51
2601 2754 4.082733 GCATTTTTAGAGACACCAGAACCC 60.083 45.833 0.00 0.00 0.00 4.11
2611 2770 1.740025 AGGCAGCGCATTTTTAGAGAC 59.260 47.619 11.47 0.00 0.00 3.36
2748 2918 5.163834 GGTTTATCATTTGGCAGCAATTGTG 60.164 40.000 7.40 5.57 0.00 3.33
2808 2978 5.620206 TCAGTATCCAGACAAAGCTTCAAA 58.380 37.500 0.00 0.00 0.00 2.69
2823 2993 5.468072 CCACAATGTGAGCTATTCAGTATCC 59.532 44.000 15.91 0.00 36.21 2.59
2834 3004 3.156293 TGTAATTGCCACAATGTGAGCT 58.844 40.909 15.91 4.01 35.23 4.09
2846 3016 1.131693 GTGTAACGGCCTGTAATTGCC 59.868 52.381 0.00 0.00 44.41 4.52
2882 3052 8.986847 CATTTTGGCAGTAGATATACTCTGAAG 58.013 37.037 0.00 0.00 35.28 3.02
2896 3066 6.019779 AGTTTATTTCGCATTTTGGCAGTA 57.980 33.333 0.00 0.00 0.00 2.74
2902 3073 7.315419 ACGTACAAGTTTATTTCGCATTTTG 57.685 32.000 0.00 0.00 0.00 2.44
2983 3294 2.813754 GCTGGTGTGCATGAACTTTAGA 59.186 45.455 5.18 0.00 0.00 2.10
3039 3350 4.320788 CCCTTGAAGCTTGTGTTTGAGATC 60.321 45.833 2.10 0.00 0.00 2.75
3053 3364 1.679032 ATCACGGCTTACCCTTGAAGC 60.679 52.381 0.00 0.00 44.12 3.86
3071 3385 9.965824 CCTAACATCCAATTTATTTGTACCATC 57.034 33.333 0.00 0.00 33.15 3.51
3134 3448 8.628630 TCATGTTTGGTGATAGTTTAATGACA 57.371 30.769 0.00 0.00 0.00 3.58
3135 3449 8.184192 CCTCATGTTTGGTGATAGTTTAATGAC 58.816 37.037 0.00 0.00 0.00 3.06
3140 3454 5.565509 TGCCTCATGTTTGGTGATAGTTTA 58.434 37.500 0.00 0.00 0.00 2.01
3145 3459 4.080413 TCTCATGCCTCATGTTTGGTGATA 60.080 41.667 6.68 0.00 41.98 2.15
3245 3560 7.011857 GCCTGGCTGTATATAAATTGATAGAGC 59.988 40.741 12.43 12.48 41.74 4.09
3255 3570 8.491134 TCTTTTAGAAGCCTGGCTGTATATAAA 58.509 33.333 24.16 16.90 39.62 1.40
3260 3575 4.844349 TCTTTTAGAAGCCTGGCTGTAT 57.156 40.909 24.16 13.55 39.62 2.29
3265 3580 4.013050 ACTGATTCTTTTAGAAGCCTGGC 58.987 43.478 11.65 11.65 39.71 4.85
3273 3588 7.619698 TGATCCCTGACTACTGATTCTTTTAGA 59.380 37.037 0.00 0.00 0.00 2.10
3278 3593 4.098654 CGTGATCCCTGACTACTGATTCTT 59.901 45.833 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.