Multiple sequence alignment - TraesCS2B01G425100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G425100 chr2B 100.000 4658 0 0 1 4658 611062234 611066891 0.000000e+00 8602.0
1 TraesCS2B01G425100 chr2B 87.822 1010 82 18 1983 2990 612073306 612072336 0.000000e+00 1146.0
2 TraesCS2B01G425100 chr2B 87.822 1010 82 18 1983 2990 612079622 612078652 0.000000e+00 1146.0
3 TraesCS2B01G425100 chr2B 87.896 537 53 6 2921 3448 612072335 612071802 5.120000e-174 621.0
4 TraesCS2B01G425100 chr2B 87.896 537 53 6 2921 3448 612078651 612078118 5.120000e-174 621.0
5 TraesCS2B01G425100 chr2B 91.003 289 13 7 3515 3799 612071778 612071499 1.220000e-100 377.0
6 TraesCS2B01G425100 chr2B 91.003 289 13 7 3515 3799 612078094 612077815 1.220000e-100 377.0
7 TraesCS2B01G425100 chr2B 90.404 198 14 1 1755 1947 612073498 612073301 5.980000e-64 255.0
8 TraesCS2B01G425100 chr2B 90.404 198 14 1 1755 1947 612079814 612079617 5.980000e-64 255.0
9 TraesCS2B01G425100 chr2B 89.831 118 10 2 1483 1599 612073695 612073579 2.900000e-32 150.0
10 TraesCS2B01G425100 chr2B 89.831 118 10 2 1483 1599 612080011 612079895 2.900000e-32 150.0
11 TraesCS2B01G425100 chr2B 81.818 165 13 12 923 1072 612080398 612080236 6.330000e-24 122.0
12 TraesCS2B01G425100 chr2B 84.921 126 10 7 954 1072 612074043 612073920 8.190000e-23 119.0
13 TraesCS2B01G425100 chr2B 100.000 36 0 0 4171 4206 612067562 612067527 3.010000e-07 67.6
14 TraesCS2B01G425100 chr2D 97.432 1830 37 5 843 2671 518806978 518808798 0.000000e+00 3110.0
15 TraesCS2B01G425100 chr2D 95.266 1204 50 5 2822 4021 518809136 518810336 0.000000e+00 1901.0
16 TraesCS2B01G425100 chr2D 95.506 534 19 1 1 529 518806252 518806785 0.000000e+00 848.0
17 TraesCS2B01G425100 chr2D 90.084 595 43 11 4074 4658 518810480 518811068 0.000000e+00 758.0
18 TraesCS2B01G425100 chr2D 93.038 158 10 1 587 744 518806781 518806937 3.630000e-56 230.0
19 TraesCS2B01G425100 chr2D 96.226 53 2 0 764 816 518806925 518806977 2.310000e-13 87.9
20 TraesCS2B01G425100 chr2D 100.000 36 0 0 4171 4206 520042134 520042099 3.010000e-07 67.6
21 TraesCS2B01G425100 chr2A 96.793 1840 49 3 843 2678 662966189 662968022 0.000000e+00 3062.0
22 TraesCS2B01G425100 chr2A 91.930 1363 71 20 2677 4034 662968129 662969457 0.000000e+00 1871.0
23 TraesCS2B01G425100 chr2A 90.867 646 33 13 4031 4658 662969589 662970226 0.000000e+00 843.0
24 TraesCS2B01G425100 chr2A 95.283 530 24 1 1 529 662965470 662965999 0.000000e+00 839.0
25 TraesCS2B01G425100 chr2A 95.139 144 7 0 587 730 662965995 662966138 1.300000e-55 228.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G425100 chr2B 611062234 611066891 4657 False 8602.000000 8602 100.000000 1 4658 1 chr2B.!!$F1 4657
1 TraesCS2B01G425100 chr2B 612067527 612080398 12871 True 415.892308 1146 89.280846 923 4206 13 chr2B.!!$R1 3283
2 TraesCS2B01G425100 chr2D 518806252 518811068 4816 False 1155.816667 3110 94.592000 1 4658 6 chr2D.!!$F1 4657
3 TraesCS2B01G425100 chr2A 662965470 662970226 4756 False 1368.600000 3062 94.002400 1 4658 5 chr2A.!!$F1 4657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
828 835 0.108945 AACCGCCTTCGTAGCAGTAC 60.109 55.000 0.00 0.0 0.0 2.73 F
831 838 0.108992 CGCCTTCGTAGCAGTACCAA 60.109 55.000 0.00 0.0 0.0 3.67 F
1075 1090 1.010046 ACCCTAACCCTAACCCTACCC 59.990 57.143 0.00 0.0 0.0 3.69 F
2761 9359 1.005630 GTCTTCTGTGCAGCTCGGT 60.006 57.895 3.23 0.0 0.0 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2740 9338 0.038801 CGAGCTGCACAGAAGACAGA 60.039 55.0 1.02 0.0 33.10 3.41 R
2752 9350 0.097674 CAGTGCAATTACCGAGCTGC 59.902 55.0 0.00 0.0 35.32 5.25 R
2997 9699 0.534203 GCCCGTCTCCAACACTTTCA 60.534 55.0 0.00 0.0 0.00 2.69 R
4622 14959 0.183014 AAGAGAGGCTACGGGATCGA 59.817 55.0 0.00 0.0 40.11 3.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 0.771127 TTGGGTACAAGAGGCTGCTT 59.229 50.000 0.00 0.00 31.73 3.91
169 170 4.335416 GTGTTTTCATGGATCCCTTCTCA 58.665 43.478 9.90 0.00 0.00 3.27
174 175 3.662078 TCATGGATCCCTTCTCAGATGT 58.338 45.455 9.90 0.00 0.00 3.06
187 188 8.820831 CCCTTCTCAGATGTATATGGTTTAGAT 58.179 37.037 0.00 0.00 0.00 1.98
199 200 2.103094 TGGTTTAGATCATGAGAGGCCG 59.897 50.000 0.09 0.00 0.00 6.13
281 282 2.033049 AGTACTGCTACGATGTAAGCCG 59.967 50.000 0.00 0.00 37.97 5.52
321 322 1.815003 CCACTTCAGATTTCCCAGTGC 59.185 52.381 0.00 0.00 34.67 4.40
338 339 4.359706 CAGTGCCATGTTTCATCATCATG 58.640 43.478 0.00 0.00 38.72 3.07
524 531 4.430007 CAAGCATGGTTGATCATCCTTTG 58.570 43.478 29.31 18.18 0.00 2.77
525 532 3.705051 AGCATGGTTGATCATCCTTTGT 58.295 40.909 20.87 8.87 0.00 2.83
526 533 4.858850 AGCATGGTTGATCATCCTTTGTA 58.141 39.130 20.87 3.72 0.00 2.41
527 534 4.641989 AGCATGGTTGATCATCCTTTGTAC 59.358 41.667 20.87 3.18 0.00 2.90
528 535 4.641989 GCATGGTTGATCATCCTTTGTACT 59.358 41.667 20.87 0.00 0.00 2.73
529 536 5.220931 GCATGGTTGATCATCCTTTGTACTC 60.221 44.000 20.87 5.58 0.00 2.59
530 537 4.503910 TGGTTGATCATCCTTTGTACTCG 58.496 43.478 20.87 0.00 0.00 4.18
531 538 3.871594 GGTTGATCATCCTTTGTACTCGG 59.128 47.826 14.55 0.00 0.00 4.63
532 539 4.382685 GGTTGATCATCCTTTGTACTCGGA 60.383 45.833 14.55 0.00 0.00 4.55
533 540 4.386867 TGATCATCCTTTGTACTCGGAC 57.613 45.455 0.00 0.00 0.00 4.79
534 541 3.132289 TGATCATCCTTTGTACTCGGACC 59.868 47.826 0.00 0.00 0.00 4.46
535 542 2.531771 TCATCCTTTGTACTCGGACCA 58.468 47.619 0.00 0.00 0.00 4.02
536 543 3.104512 TCATCCTTTGTACTCGGACCAT 58.895 45.455 0.00 0.00 0.00 3.55
537 544 3.118775 TCATCCTTTGTACTCGGACCATG 60.119 47.826 0.00 0.00 0.00 3.66
538 545 2.531771 TCCTTTGTACTCGGACCATGA 58.468 47.619 0.00 0.00 0.00 3.07
539 546 2.496070 TCCTTTGTACTCGGACCATGAG 59.504 50.000 0.00 0.00 39.40 2.90
541 548 3.446161 CCTTTGTACTCGGACCATGAGTA 59.554 47.826 5.42 5.42 44.57 2.59
546 553 3.944055 ACTCGGACCATGAGTATATGC 57.056 47.619 0.00 0.00 44.57 3.14
547 554 3.501349 ACTCGGACCATGAGTATATGCT 58.499 45.455 0.00 0.00 44.57 3.79
548 555 4.663334 ACTCGGACCATGAGTATATGCTA 58.337 43.478 0.00 0.00 44.57 3.49
549 556 5.265191 ACTCGGACCATGAGTATATGCTAT 58.735 41.667 0.00 0.00 44.57 2.97
550 557 5.358442 ACTCGGACCATGAGTATATGCTATC 59.642 44.000 0.00 0.00 44.57 2.08
551 558 5.261216 TCGGACCATGAGTATATGCTATCA 58.739 41.667 0.00 0.00 0.00 2.15
552 559 5.358160 TCGGACCATGAGTATATGCTATCAG 59.642 44.000 0.00 0.00 0.00 2.90
553 560 5.126222 CGGACCATGAGTATATGCTATCAGT 59.874 44.000 0.00 0.00 0.00 3.41
554 561 6.350528 CGGACCATGAGTATATGCTATCAGTT 60.351 42.308 0.00 0.00 0.00 3.16
555 562 7.038659 GGACCATGAGTATATGCTATCAGTTC 58.961 42.308 0.00 0.00 0.00 3.01
556 563 6.940739 ACCATGAGTATATGCTATCAGTTCC 58.059 40.000 0.00 0.00 0.00 3.62
557 564 6.498303 ACCATGAGTATATGCTATCAGTTCCA 59.502 38.462 0.00 0.00 0.00 3.53
558 565 7.016563 ACCATGAGTATATGCTATCAGTTCCAA 59.983 37.037 0.00 0.00 0.00 3.53
559 566 7.548427 CCATGAGTATATGCTATCAGTTCCAAG 59.452 40.741 0.00 0.00 0.00 3.61
560 567 6.997655 TGAGTATATGCTATCAGTTCCAAGG 58.002 40.000 0.00 0.00 0.00 3.61
561 568 6.782494 TGAGTATATGCTATCAGTTCCAAGGA 59.218 38.462 0.00 0.00 0.00 3.36
562 569 7.290014 TGAGTATATGCTATCAGTTCCAAGGAA 59.710 37.037 0.00 0.00 0.00 3.36
594 601 4.494591 AGGAGTTCCTTGGAGTACTTTCT 58.505 43.478 0.00 0.00 46.09 2.52
709 716 4.758688 ACACGCTGAATAATGTGATGAGA 58.241 39.130 0.00 0.00 36.25 3.27
721 728 5.624344 ATGTGATGAGAAACTCTGCTTTG 57.376 39.130 0.00 0.00 0.00 2.77
729 736 2.736670 AACTCTGCTTTGGGTGAAGT 57.263 45.000 0.00 0.00 0.00 3.01
730 737 3.857157 AACTCTGCTTTGGGTGAAGTA 57.143 42.857 0.00 0.00 0.00 2.24
731 738 3.857157 ACTCTGCTTTGGGTGAAGTAA 57.143 42.857 0.00 0.00 0.00 2.24
732 739 4.373156 ACTCTGCTTTGGGTGAAGTAAT 57.627 40.909 0.00 0.00 0.00 1.89
733 740 4.729868 ACTCTGCTTTGGGTGAAGTAATT 58.270 39.130 0.00 0.00 0.00 1.40
734 741 5.876357 ACTCTGCTTTGGGTGAAGTAATTA 58.124 37.500 0.00 0.00 0.00 1.40
735 742 6.485171 ACTCTGCTTTGGGTGAAGTAATTAT 58.515 36.000 0.00 0.00 0.00 1.28
736 743 6.599638 ACTCTGCTTTGGGTGAAGTAATTATC 59.400 38.462 0.00 0.00 0.00 1.75
737 744 6.480763 TCTGCTTTGGGTGAAGTAATTATCA 58.519 36.000 0.00 0.00 0.00 2.15
738 745 6.945435 TCTGCTTTGGGTGAAGTAATTATCAA 59.055 34.615 0.00 0.00 0.00 2.57
739 746 7.615365 TCTGCTTTGGGTGAAGTAATTATCAAT 59.385 33.333 0.00 0.00 0.00 2.57
740 747 8.133024 TGCTTTGGGTGAAGTAATTATCAATT 57.867 30.769 0.00 0.00 34.90 2.32
741 748 8.592809 TGCTTTGGGTGAAGTAATTATCAATTT 58.407 29.630 0.00 0.00 32.38 1.82
742 749 9.087424 GCTTTGGGTGAAGTAATTATCAATTTC 57.913 33.333 0.00 0.00 32.38 2.17
743 750 9.586435 CTTTGGGTGAAGTAATTATCAATTTCC 57.414 33.333 0.00 0.00 32.38 3.13
744 751 8.893563 TTGGGTGAAGTAATTATCAATTTCCT 57.106 30.769 0.00 0.00 32.38 3.36
745 752 8.893563 TGGGTGAAGTAATTATCAATTTCCTT 57.106 30.769 0.00 0.00 32.38 3.36
746 753 9.320295 TGGGTGAAGTAATTATCAATTTCCTTT 57.680 29.630 0.00 0.00 32.38 3.11
816 823 4.526970 AGATGATAATTCACAAACCGCCT 58.473 39.130 0.00 0.00 33.85 5.52
817 824 4.949856 AGATGATAATTCACAAACCGCCTT 59.050 37.500 0.00 0.00 33.85 4.35
818 825 4.695217 TGATAATTCACAAACCGCCTTC 57.305 40.909 0.00 0.00 0.00 3.46
819 826 3.126171 TGATAATTCACAAACCGCCTTCG 59.874 43.478 0.00 0.00 0.00 3.79
820 827 1.314730 AATTCACAAACCGCCTTCGT 58.685 45.000 0.00 0.00 0.00 3.85
821 828 2.172851 ATTCACAAACCGCCTTCGTA 57.827 45.000 0.00 0.00 0.00 3.43
822 829 1.504359 TTCACAAACCGCCTTCGTAG 58.496 50.000 0.00 0.00 0.00 3.51
823 830 0.947180 TCACAAACCGCCTTCGTAGC 60.947 55.000 0.00 0.00 0.00 3.58
824 831 1.070105 ACAAACCGCCTTCGTAGCA 59.930 52.632 0.00 0.00 0.00 3.49
825 832 0.949105 ACAAACCGCCTTCGTAGCAG 60.949 55.000 0.00 0.00 0.00 4.24
826 833 0.949105 CAAACCGCCTTCGTAGCAGT 60.949 55.000 0.00 0.00 0.00 4.40
827 834 0.604578 AAACCGCCTTCGTAGCAGTA 59.395 50.000 0.00 0.00 0.00 2.74
828 835 0.108945 AACCGCCTTCGTAGCAGTAC 60.109 55.000 0.00 0.00 0.00 2.73
829 836 1.226888 CCGCCTTCGTAGCAGTACC 60.227 63.158 0.00 0.00 0.00 3.34
830 837 1.509463 CGCCTTCGTAGCAGTACCA 59.491 57.895 0.00 0.00 0.00 3.25
831 838 0.108992 CGCCTTCGTAGCAGTACCAA 60.109 55.000 0.00 0.00 0.00 3.67
832 839 1.670674 CGCCTTCGTAGCAGTACCAAA 60.671 52.381 0.00 0.00 0.00 3.28
833 840 2.000447 GCCTTCGTAGCAGTACCAAAG 59.000 52.381 0.00 0.00 0.00 2.77
834 841 2.618053 CCTTCGTAGCAGTACCAAAGG 58.382 52.381 0.00 0.00 0.00 3.11
835 842 2.028385 CCTTCGTAGCAGTACCAAAGGT 60.028 50.000 0.00 0.00 40.16 3.50
836 843 3.194116 CCTTCGTAGCAGTACCAAAGGTA 59.806 47.826 0.00 0.00 37.09 3.08
1067 1082 1.131804 TCCCCCAAACCCTAACCCTAA 60.132 52.381 0.00 0.00 0.00 2.69
1071 1086 1.997791 CCAAACCCTAACCCTAACCCT 59.002 52.381 0.00 0.00 0.00 4.34
1072 1087 3.192108 CCAAACCCTAACCCTAACCCTA 58.808 50.000 0.00 0.00 0.00 3.53
1073 1088 3.054139 CCAAACCCTAACCCTAACCCTAC 60.054 52.174 0.00 0.00 0.00 3.18
1074 1089 2.575921 ACCCTAACCCTAACCCTACC 57.424 55.000 0.00 0.00 0.00 3.18
1075 1090 1.010046 ACCCTAACCCTAACCCTACCC 59.990 57.143 0.00 0.00 0.00 3.69
1076 1091 1.696965 CCCTAACCCTAACCCTACCCC 60.697 61.905 0.00 0.00 0.00 4.95
1080 1095 2.041197 CCTAACCCTACCCCGCCT 60.041 66.667 0.00 0.00 0.00 5.52
1125 1140 4.935495 CACATCCCCGCCATCCCG 62.935 72.222 0.00 0.00 0.00 5.14
1398 1428 4.087892 CTCCTCACCAGGTGGCGG 62.088 72.222 20.14 18.98 41.28 6.13
1419 1449 2.354259 GAGACCTTCAACTCATGGCTG 58.646 52.381 0.00 0.00 33.86 4.85
1713 8033 1.217057 AGATGGAAGGTGGTGGGCAT 61.217 55.000 0.00 0.00 0.00 4.40
1860 8185 2.220586 TGGGTCGCCAGTTGATCCA 61.221 57.895 0.00 0.00 44.26 3.41
2166 8491 3.365265 GGCAACGGGAGGCTTGTG 61.365 66.667 0.00 0.00 0.00 3.33
2632 8957 4.794334 TCAGATACTGAGGGGTAAGACTC 58.206 47.826 0.00 0.00 35.39 3.36
2633 8958 4.479056 TCAGATACTGAGGGGTAAGACTCT 59.521 45.833 0.00 0.00 35.39 3.24
2718 9313 9.764363 GTATTCAATACCTATCACAACTGATGA 57.236 33.333 0.00 0.00 37.70 2.92
2752 9350 8.994429 ACATATTCTTAGTTCTGTCTTCTGTG 57.006 34.615 0.00 0.00 0.00 3.66
2755 9353 4.876125 TCTTAGTTCTGTCTTCTGTGCAG 58.124 43.478 0.00 0.00 0.00 4.41
2761 9359 1.005630 GTCTTCTGTGCAGCTCGGT 60.006 57.895 3.23 0.00 0.00 4.69
2833 9439 5.300286 ACTCCTCAAAAATGGTTTCTGTCTG 59.700 40.000 0.00 0.00 0.00 3.51
2859 9490 1.885887 TGAACCTTGTGTATTGCAGGC 59.114 47.619 0.00 0.00 0.00 4.85
2913 9545 6.010850 AGATCCTCTACAGAGTGTTTGTACA 58.989 40.000 5.56 0.00 40.48 2.90
2938 9570 1.202818 GGGGCACAGACTCTTTCAGTT 60.203 52.381 0.00 0.00 34.41 3.16
2997 9699 7.892771 TCTGGAGATGACTATGACATATTAGCT 59.107 37.037 0.00 0.00 0.00 3.32
3018 9720 4.681978 AGTGTTGGAGACGGGCGC 62.682 66.667 0.00 0.00 0.00 6.53
3198 9900 6.394025 GCTTGTGCTACCTTACTAGTAGAT 57.606 41.667 3.59 0.00 39.71 1.98
3213 9915 5.873164 ACTAGTAGATTTGTTTAGGCAACCG 59.127 40.000 3.59 0.00 33.97 4.44
3231 9933 1.271926 CCGGACTTGGAATTTGGGAGT 60.272 52.381 0.00 0.00 0.00 3.85
3240 9942 4.803452 TGGAATTTGGGAGTTTCTCTGTT 58.197 39.130 0.00 0.00 0.00 3.16
3250 9952 5.010617 GGGAGTTTCTCTGTTATTTTTGGCA 59.989 40.000 0.00 0.00 0.00 4.92
3294 10005 1.681166 CCAGCCATTCTGAAGGTGGAG 60.681 57.143 18.01 8.31 45.72 3.86
3501 10212 2.162408 GCTGCATTACCTCTGTGAAACC 59.838 50.000 0.00 0.00 34.36 3.27
3540 10253 0.110486 GCAGGAAAGGTCTTGGTCCA 59.890 55.000 0.00 0.00 31.59 4.02
3558 10271 0.818445 CAGGGGCTGATGCTGTGATC 60.818 60.000 0.00 0.00 39.59 2.92
3681 10394 7.619698 TGATCCCTGACTACTGATTCTTTTAGA 59.380 37.037 0.00 0.00 0.00 2.10
3709 10422 7.011857 GCCTGGCTGTATATAAATTGATAGAGC 59.988 40.741 12.43 12.48 41.74 4.09
3809 10523 4.080413 TCTCATGCCTCATGTTTGGTGATA 60.080 41.667 6.68 0.00 41.98 2.15
3814 10528 5.565509 TGCCTCATGTTTGGTGATAGTTTA 58.434 37.500 0.00 0.00 0.00 2.01
3819 10533 8.184192 CCTCATGTTTGGTGATAGTTTAATGAC 58.816 37.037 0.00 0.00 0.00 3.06
3820 10534 8.628630 TCATGTTTGGTGATAGTTTAATGACA 57.371 30.769 0.00 0.00 0.00 3.58
3883 10597 9.965824 CCTAACATCCAATTTATTTGTACCATC 57.034 33.333 0.00 0.00 33.15 3.51
3915 10632 4.320788 CCCTTGAAGCTTGTGTTTGAGATC 60.321 45.833 2.10 0.00 0.00 2.75
3973 10691 4.082571 GCTGGTGTGCATGAACTTTAGATT 60.083 41.667 5.18 0.00 0.00 2.40
4052 11210 7.315419 ACGTACAAGTTTATTTCGCATTTTG 57.685 32.000 0.00 0.00 0.00 2.44
4054 11212 5.590104 ACAAGTTTATTTCGCATTTTGGC 57.410 34.783 0.00 0.00 0.00 4.52
4055 11213 5.053145 ACAAGTTTATTTCGCATTTTGGCA 58.947 33.333 0.00 0.00 0.00 4.92
4056 11214 5.177327 ACAAGTTTATTTCGCATTTTGGCAG 59.823 36.000 0.00 0.00 0.00 4.85
4057 11215 4.881920 AGTTTATTTCGCATTTTGGCAGT 58.118 34.783 0.00 0.00 0.00 4.40
4058 11216 6.019779 AGTTTATTTCGCATTTTGGCAGTA 57.980 33.333 0.00 0.00 0.00 2.74
4059 11217 6.092748 AGTTTATTTCGCATTTTGGCAGTAG 58.907 36.000 0.00 0.00 0.00 2.57
4060 11218 5.888691 TTATTTCGCATTTTGGCAGTAGA 57.111 34.783 0.00 0.00 0.00 2.59
4061 11219 4.989279 ATTTCGCATTTTGGCAGTAGAT 57.011 36.364 0.00 0.00 0.00 1.98
4062 11220 7.561021 TTATTTCGCATTTTGGCAGTAGATA 57.439 32.000 0.00 0.00 0.00 1.98
4063 11221 6.639632 ATTTCGCATTTTGGCAGTAGATAT 57.360 33.333 0.00 0.00 0.00 1.63
4064 11222 7.744087 ATTTCGCATTTTGGCAGTAGATATA 57.256 32.000 0.00 0.00 0.00 0.86
4065 11223 6.539649 TTCGCATTTTGGCAGTAGATATAC 57.460 37.500 0.00 0.00 0.00 1.47
4066 11224 5.853936 TCGCATTTTGGCAGTAGATATACT 58.146 37.500 0.00 0.00 0.00 2.12
4067 11225 5.926542 TCGCATTTTGGCAGTAGATATACTC 59.073 40.000 0.00 0.00 0.00 2.59
4068 11226 5.928839 CGCATTTTGGCAGTAGATATACTCT 59.071 40.000 0.00 0.00 38.06 3.24
4069 11227 6.128715 CGCATTTTGGCAGTAGATATACTCTG 60.129 42.308 0.00 0.00 35.28 3.35
4070 11228 6.931281 GCATTTTGGCAGTAGATATACTCTGA 59.069 38.462 0.00 0.00 35.28 3.27
4071 11229 7.442364 GCATTTTGGCAGTAGATATACTCTGAA 59.558 37.037 0.00 0.00 35.28 3.02
4072 11230 8.986847 CATTTTGGCAGTAGATATACTCTGAAG 58.013 37.037 0.00 0.00 35.28 3.02
4120 12963 3.156293 TGTAATTGCCACAATGTGAGCT 58.844 40.909 15.91 4.01 35.23 4.09
4131 12974 5.468072 CCACAATGTGAGCTATTCAGTATCC 59.532 44.000 15.91 0.00 36.21 2.59
4146 12989 5.620206 TCAGTATCCAGACAAAGCTTCAAA 58.380 37.500 0.00 0.00 0.00 2.69
4206 14526 5.163834 GGTTTATCATTTGGCAGCAATTGTG 60.164 40.000 7.40 5.57 0.00 3.33
4343 14674 1.740025 AGGCAGCGCATTTTTAGAGAC 59.260 47.619 11.47 0.00 0.00 3.36
4352 14683 4.378459 CGCATTTTTAGAGACACCAGAACC 60.378 45.833 0.00 0.00 0.00 3.62
4353 14684 4.082733 GCATTTTTAGAGACACCAGAACCC 60.083 45.833 0.00 0.00 0.00 4.11
4354 14685 4.781775 TTTTTAGAGACACCAGAACCCA 57.218 40.909 0.00 0.00 0.00 4.51
4356 14687 2.696526 TAGAGACACCAGAACCCACT 57.303 50.000 0.00 0.00 0.00 4.00
4357 14688 1.807814 AGAGACACCAGAACCCACTT 58.192 50.000 0.00 0.00 0.00 3.16
4370 14707 0.674895 CCCACTTCCACTAGCAGCAC 60.675 60.000 0.00 0.00 0.00 4.40
4554 14891 5.272283 GGATAAATCCGAGGTACAGTTCA 57.728 43.478 0.00 0.00 37.19 3.18
4555 14892 5.855045 GGATAAATCCGAGGTACAGTTCAT 58.145 41.667 0.00 0.00 37.19 2.57
4607 14944 3.131755 GCAAGCCAAAGCCTAGAAATCAT 59.868 43.478 0.00 0.00 41.25 2.45
4622 14959 6.045072 AGAAATCATGAATGCAACCACAAT 57.955 33.333 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 1.980052 CTTCAGGTACCGGGCTTCA 59.020 57.895 12.41 0.00 0.00 3.02
174 175 6.127338 CGGCCTCTCATGATCTAAACCATATA 60.127 42.308 0.00 0.00 0.00 0.86
187 188 0.105709 TATGGGACGGCCTCTCATGA 60.106 55.000 21.26 0.00 40.66 3.07
195 196 1.621814 TGCTATTAGTATGGGACGGCC 59.378 52.381 0.00 0.00 0.00 6.13
199 200 6.163135 ACTTCACTGCTATTAGTATGGGAC 57.837 41.667 0.00 0.00 0.00 4.46
250 251 0.530744 TAGCAGTACTCCTGTTGCCG 59.469 55.000 0.00 0.00 43.55 5.69
281 282 0.040958 CACTTCACAAACTGCGCTCC 60.041 55.000 9.73 0.00 0.00 4.70
321 322 3.491964 GGCCACATGATGATGAAACATGG 60.492 47.826 0.00 0.00 43.55 3.66
338 339 1.337118 TGATCCCAAAACAAGGCCAC 58.663 50.000 5.01 0.00 0.00 5.01
524 531 4.459685 AGCATATACTCATGGTCCGAGTAC 59.540 45.833 8.36 0.00 46.01 2.73
525 532 4.663334 AGCATATACTCATGGTCCGAGTA 58.337 43.478 8.56 8.56 46.92 2.59
526 533 3.501349 AGCATATACTCATGGTCCGAGT 58.499 45.455 4.98 4.98 45.53 4.18
527 534 5.358160 TGATAGCATATACTCATGGTCCGAG 59.642 44.000 0.00 0.00 37.74 4.63
528 535 5.261216 TGATAGCATATACTCATGGTCCGA 58.739 41.667 0.00 0.00 37.74 4.55
529 536 5.126222 ACTGATAGCATATACTCATGGTCCG 59.874 44.000 0.00 0.00 37.74 4.79
530 537 6.537453 ACTGATAGCATATACTCATGGTCC 57.463 41.667 0.00 0.00 37.74 4.46
531 538 7.038659 GGAACTGATAGCATATACTCATGGTC 58.961 42.308 0.00 0.00 37.74 4.02
532 539 6.498303 TGGAACTGATAGCATATACTCATGGT 59.502 38.462 0.00 0.00 39.78 3.55
533 540 6.939622 TGGAACTGATAGCATATACTCATGG 58.060 40.000 0.00 0.00 0.00 3.66
534 541 7.548427 CCTTGGAACTGATAGCATATACTCATG 59.452 40.741 0.00 0.00 0.00 3.07
535 542 7.455953 TCCTTGGAACTGATAGCATATACTCAT 59.544 37.037 0.00 0.00 0.00 2.90
536 543 6.782494 TCCTTGGAACTGATAGCATATACTCA 59.218 38.462 0.00 0.00 0.00 3.41
537 544 7.233389 TCCTTGGAACTGATAGCATATACTC 57.767 40.000 0.00 0.00 0.00 2.59
538 545 7.445945 GTTCCTTGGAACTGATAGCATATACT 58.554 38.462 21.47 0.00 32.67 2.12
539 546 6.651225 GGTTCCTTGGAACTGATAGCATATAC 59.349 42.308 25.80 6.65 35.54 1.47
540 547 6.558775 AGGTTCCTTGGAACTGATAGCATATA 59.441 38.462 25.80 0.00 35.54 0.86
541 548 5.370880 AGGTTCCTTGGAACTGATAGCATAT 59.629 40.000 25.80 3.73 35.54 1.78
542 549 4.721776 AGGTTCCTTGGAACTGATAGCATA 59.278 41.667 25.80 0.00 35.54 3.14
543 550 3.525199 AGGTTCCTTGGAACTGATAGCAT 59.475 43.478 25.80 0.00 35.54 3.79
544 551 2.912956 AGGTTCCTTGGAACTGATAGCA 59.087 45.455 25.80 0.00 35.54 3.49
545 552 3.636153 AGGTTCCTTGGAACTGATAGC 57.364 47.619 25.80 12.38 35.54 2.97
546 553 4.911390 ACAAGGTTCCTTGGAACTGATAG 58.089 43.478 28.01 16.11 45.39 2.08
547 554 4.993705 ACAAGGTTCCTTGGAACTGATA 57.006 40.909 28.01 0.00 45.39 2.15
548 555 3.884037 ACAAGGTTCCTTGGAACTGAT 57.116 42.857 28.01 13.49 45.39 2.90
549 556 3.456644 TGTACAAGGTTCCTTGGAACTGA 59.543 43.478 28.01 12.87 45.39 3.41
550 557 3.815809 TGTACAAGGTTCCTTGGAACTG 58.184 45.455 28.01 20.48 45.39 3.16
551 558 4.461198 CTTGTACAAGGTTCCTTGGAACT 58.539 43.478 28.01 14.38 45.39 3.01
552 559 4.830826 CTTGTACAAGGTTCCTTGGAAC 57.169 45.455 28.01 24.46 45.39 3.62
571 578 7.377493 TGAGAAAGTACTCCAAGGAACTCCTT 61.377 42.308 5.11 5.11 43.90 3.36
572 579 5.932271 TGAGAAAGTACTCCAAGGAACTCCT 60.932 44.000 0.00 0.00 41.01 3.69
573 580 4.283722 TGAGAAAGTACTCCAAGGAACTCC 59.716 45.833 0.00 0.00 34.86 3.85
574 581 5.470047 TGAGAAAGTACTCCAAGGAACTC 57.530 43.478 0.00 0.00 34.86 3.01
575 582 4.284746 CCTGAGAAAGTACTCCAAGGAACT 59.715 45.833 0.00 0.00 36.70 3.01
576 583 4.570930 CCTGAGAAAGTACTCCAAGGAAC 58.429 47.826 0.00 0.00 34.20 3.62
577 584 3.008049 GCCTGAGAAAGTACTCCAAGGAA 59.992 47.826 15.29 0.00 34.20 3.36
578 585 2.567615 GCCTGAGAAAGTACTCCAAGGA 59.432 50.000 15.29 0.00 34.20 3.36
579 586 2.355209 GGCCTGAGAAAGTACTCCAAGG 60.355 54.545 0.00 4.54 36.22 3.61
580 587 2.303022 TGGCCTGAGAAAGTACTCCAAG 59.697 50.000 3.32 0.00 36.22 3.61
581 588 2.303022 CTGGCCTGAGAAAGTACTCCAA 59.697 50.000 3.32 0.00 36.22 3.53
582 589 1.902508 CTGGCCTGAGAAAGTACTCCA 59.097 52.381 3.32 0.00 36.22 3.86
583 590 1.903183 ACTGGCCTGAGAAAGTACTCC 59.097 52.381 17.64 0.00 36.22 3.85
584 591 3.259625 AGAACTGGCCTGAGAAAGTACTC 59.740 47.826 17.64 0.00 37.42 2.59
585 592 3.243724 AGAACTGGCCTGAGAAAGTACT 58.756 45.455 17.64 0.00 0.00 2.73
594 601 1.768275 TCAGAACAAGAACTGGCCTGA 59.232 47.619 17.64 0.00 36.12 3.86
709 716 3.018423 ACTTCACCCAAAGCAGAGTTT 57.982 42.857 0.00 0.00 0.00 2.66
747 754 9.930693 AAATTGATAATTACTTACCCGCAAAAA 57.069 25.926 0.00 0.00 0.00 1.94
748 755 9.575783 GAAATTGATAATTACTTACCCGCAAAA 57.424 29.630 0.00 0.00 0.00 2.44
749 756 8.192110 GGAAATTGATAATTACTTACCCGCAAA 58.808 33.333 0.00 0.00 0.00 3.68
750 757 7.467539 CGGAAATTGATAATTACTTACCCGCAA 60.468 37.037 0.00 0.00 0.00 4.85
751 758 6.017770 CGGAAATTGATAATTACTTACCCGCA 60.018 38.462 0.00 0.00 0.00 5.69
752 759 6.017687 ACGGAAATTGATAATTACTTACCCGC 60.018 38.462 0.00 0.00 34.68 6.13
753 760 7.486802 ACGGAAATTGATAATTACTTACCCG 57.513 36.000 0.00 0.00 37.03 5.28
759 766 8.774586 GCAGTCATACGGAAATTGATAATTACT 58.225 33.333 0.00 0.00 0.00 2.24
760 767 7.740346 CGCAGTCATACGGAAATTGATAATTAC 59.260 37.037 0.00 0.00 0.00 1.89
761 768 7.439955 ACGCAGTCATACGGAAATTGATAATTA 59.560 33.333 0.00 0.00 29.74 1.40
762 769 6.260050 ACGCAGTCATACGGAAATTGATAATT 59.740 34.615 0.00 0.00 29.74 1.40
766 773 3.531538 ACGCAGTCATACGGAAATTGAT 58.468 40.909 0.00 0.00 29.74 2.57
826 833 5.376756 AAAACAGACCTGTACCTTTGGTA 57.623 39.130 2.78 0.00 44.13 3.25
827 834 3.945640 AAACAGACCTGTACCTTTGGT 57.054 42.857 2.78 0.00 44.13 3.67
828 835 4.212636 CGTAAAACAGACCTGTACCTTTGG 59.787 45.833 2.78 0.00 44.13 3.28
829 836 4.812626 ACGTAAAACAGACCTGTACCTTTG 59.187 41.667 2.78 0.00 44.13 2.77
830 837 5.027293 ACGTAAAACAGACCTGTACCTTT 57.973 39.130 2.78 3.76 44.13 3.11
831 838 4.677673 ACGTAAAACAGACCTGTACCTT 57.322 40.909 2.78 1.16 44.13 3.50
832 839 5.105595 GGATACGTAAAACAGACCTGTACCT 60.106 44.000 0.00 0.00 44.13 3.08
833 840 5.105063 GGATACGTAAAACAGACCTGTACC 58.895 45.833 0.00 0.00 44.13 3.34
834 841 5.958955 AGGATACGTAAAACAGACCTGTAC 58.041 41.667 0.00 0.00 42.92 2.90
835 842 6.658816 TGTAGGATACGTAAAACAGACCTGTA 59.341 38.462 0.00 0.00 46.99 2.74
836 843 5.477984 TGTAGGATACGTAAAACAGACCTGT 59.522 40.000 0.00 0.00 46.99 4.00
837 844 5.803967 GTGTAGGATACGTAAAACAGACCTG 59.196 44.000 0.00 0.00 46.99 4.00
838 845 5.105595 GGTGTAGGATACGTAAAACAGACCT 60.106 44.000 0.00 3.26 46.99 3.85
839 846 5.105063 GGTGTAGGATACGTAAAACAGACC 58.895 45.833 0.00 0.42 46.99 3.85
840 847 4.795278 CGGTGTAGGATACGTAAAACAGAC 59.205 45.833 0.00 0.00 46.99 3.51
841 848 4.699735 TCGGTGTAGGATACGTAAAACAGA 59.300 41.667 0.00 0.00 46.99 3.41
845 852 4.864247 GCTTTCGGTGTAGGATACGTAAAA 59.136 41.667 0.00 0.00 46.99 1.52
1071 1086 4.839706 GGTACGGGAGGCGGGGTA 62.840 72.222 0.00 0.00 0.00 3.69
1095 1110 1.384191 GATGTGGAGGGCAAGGGTT 59.616 57.895 0.00 0.00 0.00 4.11
1120 1135 3.801997 CTTGCTGGGGCTCGGGAT 61.802 66.667 0.00 0.00 39.59 3.85
1215 1245 0.384309 TCACTATGATGTCGTCCGCC 59.616 55.000 0.00 0.00 0.00 6.13
1398 1428 1.280421 AGCCATGAGTTGAAGGTCTCC 59.720 52.381 0.00 0.00 0.00 3.71
1722 8042 3.052082 CTGCCACCAAGGTCAGCG 61.052 66.667 6.36 0.00 40.61 5.18
1731 8051 2.668212 GTAAGCACGCTGCCACCA 60.668 61.111 6.39 0.00 46.52 4.17
1860 8185 3.379452 CTCCACTTCCTTATCCACCTCT 58.621 50.000 0.00 0.00 0.00 3.69
2166 8491 3.355957 ATTCTCTGCCAGGGCCTGC 62.356 63.158 28.51 22.28 41.09 4.85
2434 8759 1.065709 TCCAAAGGTATCAAGGTCGGC 60.066 52.381 0.00 0.00 0.00 5.54
2731 9329 5.858381 TGCACAGAAGACAGAACTAAGAAT 58.142 37.500 0.00 0.00 0.00 2.40
2734 9332 3.431572 GCTGCACAGAAGACAGAACTAAG 59.568 47.826 0.81 0.00 33.10 2.18
2735 9333 3.070159 AGCTGCACAGAAGACAGAACTAA 59.930 43.478 1.02 0.00 33.10 2.24
2736 9334 2.630098 AGCTGCACAGAAGACAGAACTA 59.370 45.455 1.02 0.00 33.10 2.24
2737 9335 1.415659 AGCTGCACAGAAGACAGAACT 59.584 47.619 1.02 0.00 33.10 3.01
2738 9336 1.797635 GAGCTGCACAGAAGACAGAAC 59.202 52.381 1.02 0.00 33.10 3.01
2739 9337 1.603931 CGAGCTGCACAGAAGACAGAA 60.604 52.381 1.02 0.00 33.10 3.02
2740 9338 0.038801 CGAGCTGCACAGAAGACAGA 60.039 55.000 1.02 0.00 33.10 3.41
2741 9339 1.013005 CCGAGCTGCACAGAAGACAG 61.013 60.000 1.02 0.00 34.48 3.51
2742 9340 1.005748 CCGAGCTGCACAGAAGACA 60.006 57.895 1.02 0.00 0.00 3.41
2743 9341 0.243907 TACCGAGCTGCACAGAAGAC 59.756 55.000 1.02 0.00 0.00 3.01
2744 9342 0.966179 TTACCGAGCTGCACAGAAGA 59.034 50.000 1.02 0.00 0.00 2.87
2745 9343 2.015736 ATTACCGAGCTGCACAGAAG 57.984 50.000 1.02 0.00 0.00 2.85
2752 9350 0.097674 CAGTGCAATTACCGAGCTGC 59.902 55.000 0.00 0.00 35.32 5.25
2755 9353 3.764885 ATTTCAGTGCAATTACCGAGC 57.235 42.857 0.00 0.00 0.00 5.03
2812 9418 5.772825 TCAGACAGAAACCATTTTTGAGG 57.227 39.130 0.00 0.00 0.00 3.86
2833 9439 6.012658 TGCAATACACAAGGTTCATCTTTC 57.987 37.500 0.00 0.00 0.00 2.62
2859 9490 3.652057 ACCCCTTGTGGTTCATAGATG 57.348 47.619 0.00 0.00 33.91 2.90
2913 9545 1.366319 AAGAGTCTGTGCCCCATCTT 58.634 50.000 0.00 0.00 0.00 2.40
2938 9570 3.062909 GCAACGTGCGAATATGAACCTAA 59.937 43.478 0.00 0.00 31.71 2.69
2997 9699 0.534203 GCCCGTCTCCAACACTTTCA 60.534 55.000 0.00 0.00 0.00 2.69
3198 9900 2.351706 AGTCCGGTTGCCTAAACAAA 57.648 45.000 0.00 0.00 40.86 2.83
3213 9915 4.152647 AGAAACTCCCAAATTCCAAGTCC 58.847 43.478 0.00 0.00 0.00 3.85
3231 9933 7.224557 GCTTTTCTGCCAAAAATAACAGAGAAA 59.775 33.333 0.00 0.00 40.08 2.52
3250 9952 2.591915 TCGGATCCGAGGCTTTTCT 58.408 52.632 32.59 0.00 44.01 2.52
3501 10212 1.472480 CCAACTAATTTCACGCCCAGG 59.528 52.381 0.00 0.00 0.00 4.45
3540 10253 1.530771 GATCACAGCATCAGCCCCT 59.469 57.895 0.00 0.00 43.56 4.79
3558 10271 1.436983 GGTCCGCCTTAATGGAAGCG 61.437 60.000 0.00 0.00 38.35 4.68
3681 10394 8.605947 TCTATCAATTTATATACAGCCAGGCTT 58.394 33.333 12.86 6.28 36.40 4.35
3709 10422 4.657055 TGATTGAACAACAACGACAACAG 58.343 39.130 0.00 0.00 41.52 3.16
3717 10431 6.672147 AGCAGAAGTATGATTGAACAACAAC 58.328 36.000 0.00 0.00 41.52 3.32
3814 10528 6.463049 CCCGAAATCTAGATAGTGGTGTCATT 60.463 42.308 5.46 0.00 0.00 2.57
3819 10533 4.939052 ACCCGAAATCTAGATAGTGGTG 57.061 45.455 5.46 5.18 0.00 4.17
3820 10534 5.078256 CCTACCCGAAATCTAGATAGTGGT 58.922 45.833 5.46 12.40 0.00 4.16
3883 10597 2.171635 GCTTCAAGGGTAAGCCGTG 58.828 57.895 0.00 0.00 42.85 4.94
3973 10691 8.177119 ACAGCAGACATGTTTCCTTTTAAATA 57.823 30.769 0.00 0.00 0.00 1.40
4020 10738 9.956797 GCGAAATAAACTTGTACGTATAAAAGA 57.043 29.630 17.42 1.91 30.94 2.52
4021 10739 9.743937 TGCGAAATAAACTTGTACGTATAAAAG 57.256 29.630 6.22 9.47 32.48 2.27
4029 10747 6.666451 GCCAAAATGCGAAATAAACTTGTACG 60.666 38.462 0.00 0.00 0.00 3.67
4044 11202 5.928839 AGAGTATATCTACTGCCAAAATGCG 59.071 40.000 0.00 0.00 38.33 4.73
4049 11207 6.839134 TCCTTCAGAGTATATCTACTGCCAAA 59.161 38.462 0.00 0.00 38.33 3.28
4052 11210 6.902771 TTCCTTCAGAGTATATCTACTGCC 57.097 41.667 0.00 0.00 38.33 4.85
4054 11212 7.319646 GCCATTCCTTCAGAGTATATCTACTG 58.680 42.308 0.00 0.00 38.33 2.74
4055 11213 6.439058 GGCCATTCCTTCAGAGTATATCTACT 59.561 42.308 0.00 0.00 40.98 2.57
4056 11214 6.211584 TGGCCATTCCTTCAGAGTATATCTAC 59.788 42.308 0.00 0.00 33.91 2.59
4057 11215 6.322931 TGGCCATTCCTTCAGAGTATATCTA 58.677 40.000 0.00 0.00 33.91 1.98
4058 11216 5.158141 TGGCCATTCCTTCAGAGTATATCT 58.842 41.667 0.00 0.00 35.36 1.98
4059 11217 5.489792 TGGCCATTCCTTCAGAGTATATC 57.510 43.478 0.00 0.00 35.26 1.63
4060 11218 5.549228 TCATGGCCATTCCTTCAGAGTATAT 59.451 40.000 17.92 0.00 35.26 0.86
4061 11219 4.907269 TCATGGCCATTCCTTCAGAGTATA 59.093 41.667 17.92 0.00 35.26 1.47
4062 11220 3.718434 TCATGGCCATTCCTTCAGAGTAT 59.282 43.478 17.92 0.00 35.26 2.12
4063 11221 3.114606 TCATGGCCATTCCTTCAGAGTA 58.885 45.455 17.92 0.00 35.26 2.59
4064 11222 1.918262 TCATGGCCATTCCTTCAGAGT 59.082 47.619 17.92 0.00 35.26 3.24
4065 11223 2.723322 TCATGGCCATTCCTTCAGAG 57.277 50.000 17.92 0.88 35.26 3.35
4066 11224 3.559069 GATTCATGGCCATTCCTTCAGA 58.441 45.455 17.92 5.42 35.26 3.27
4067 11225 2.292569 CGATTCATGGCCATTCCTTCAG 59.707 50.000 17.92 2.59 35.26 3.02
4068 11226 2.300433 CGATTCATGGCCATTCCTTCA 58.700 47.619 17.92 0.00 35.26 3.02
4069 11227 2.033801 CACGATTCATGGCCATTCCTTC 59.966 50.000 17.92 9.88 35.26 3.46
4070 11228 2.026641 CACGATTCATGGCCATTCCTT 58.973 47.619 17.92 0.55 35.26 3.36
4071 11229 1.064463 ACACGATTCATGGCCATTCCT 60.064 47.619 17.92 2.46 35.26 3.36
4072 11230 1.392589 ACACGATTCATGGCCATTCC 58.607 50.000 17.92 4.41 0.00 3.01
4120 12963 6.946340 TGAAGCTTTGTCTGGATACTGAATA 58.054 36.000 0.00 0.00 46.86 1.75
4131 12974 4.474113 GCTGATCTTTGAAGCTTTGTCTG 58.526 43.478 0.00 0.00 34.05 3.51
4146 12989 2.824341 CAAAGAAAAGGCTGGCTGATCT 59.176 45.455 3.84 8.78 0.00 2.75
4206 14526 0.515564 ACATTGTTGTCGTTAGGCGC 59.484 50.000 0.00 0.00 41.07 6.53
4343 14674 0.474184 AGTGGAAGTGGGTTCTGGTG 59.526 55.000 0.00 0.00 35.25 4.17
4352 14683 0.322975 AGTGCTGCTAGTGGAAGTGG 59.677 55.000 0.00 0.00 0.00 4.00
4353 14684 2.886081 CTAGTGCTGCTAGTGGAAGTG 58.114 52.381 0.00 0.00 41.68 3.16
4354 14685 1.205893 GCTAGTGCTGCTAGTGGAAGT 59.794 52.381 14.31 0.00 46.81 3.01
4383 14720 7.964559 CACTGTAATTGAACCATGACTGTAATG 59.035 37.037 0.00 0.00 0.00 1.90
4607 14944 2.423185 GGATCGATTGTGGTTGCATTCA 59.577 45.455 0.00 0.00 0.00 2.57
4622 14959 0.183014 AAGAGAGGCTACGGGATCGA 59.817 55.000 0.00 0.00 40.11 3.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.