Multiple sequence alignment - TraesCS2B01G424900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G424900 chr2B 100.000 4535 0 0 1 4535 610923753 610928287 0.000000e+00 8375.0
1 TraesCS2B01G424900 chr2B 94.553 257 11 2 4 260 479849913 479849660 1.180000e-105 394.0
2 TraesCS2B01G424900 chr2B 77.143 455 95 9 1301 1751 675356147 675355698 5.820000e-64 255.0
3 TraesCS2B01G424900 chr2B 92.000 50 3 1 2975 3024 419941345 419941297 8.140000e-08 69.4
4 TraesCS2B01G424900 chr2D 94.424 2493 89 15 725 3198 518612890 518615351 0.000000e+00 3788.0
5 TraesCS2B01G424900 chr2D 96.021 578 17 3 3200 3773 518615399 518615974 0.000000e+00 935.0
6 TraesCS2B01G424900 chr2D 88.301 359 40 2 4178 4535 630617393 630617750 3.240000e-116 429.0
7 TraesCS2B01G424900 chr2D 76.923 455 96 9 1301 1751 564095461 564095012 2.710000e-62 250.0
8 TraesCS2B01G424900 chr2D 92.814 167 10 2 374 539 518612745 518612910 1.630000e-59 241.0
9 TraesCS2B01G424900 chr2D 85.714 91 9 3 280 366 518612618 518612708 4.830000e-15 93.5
10 TraesCS2B01G424900 chr2D 92.453 53 3 1 2972 3024 238089686 238089737 1.750000e-09 75.0
11 TraesCS2B01G424900 chr2A 93.814 2522 96 19 725 3198 662904814 662907323 0.000000e+00 3738.0
12 TraesCS2B01G424900 chr2A 95.181 581 22 2 3198 3773 662907371 662907950 0.000000e+00 913.0
13 TraesCS2B01G424900 chr2A 91.414 396 32 2 3787 4182 66851508 66851115 3.990000e-150 542.0
14 TraesCS2B01G424900 chr2A 88.089 361 34 8 4178 4535 605183654 605184008 1.950000e-113 420.0
15 TraesCS2B01G424900 chr6D 92.494 413 26 4 3774 4185 391684356 391684764 1.820000e-163 586.0
16 TraesCS2B01G424900 chr6D 89.049 347 36 2 4190 4535 391684853 391685198 3.240000e-116 429.0
17 TraesCS2B01G424900 chr4B 91.443 409 33 2 3774 4182 66605335 66605741 1.100000e-155 560.0
18 TraesCS2B01G424900 chr4B 98.182 165 3 0 561 725 110315489 110315325 5.740000e-74 289.0
19 TraesCS2B01G424900 chr3D 91.041 413 34 3 3774 4185 596883453 596883863 5.130000e-154 555.0
20 TraesCS2B01G424900 chr3D 87.719 171 18 1 1978 2148 268521011 268521178 3.580000e-46 196.0
21 TraesCS2B01G424900 chr3A 91.709 398 31 2 3781 4178 647500910 647500515 6.630000e-153 551.0
22 TraesCS2B01G424900 chr1D 90.931 408 35 2 3774 4181 338925393 338925798 8.580000e-152 547.0
23 TraesCS2B01G424900 chr1D 87.465 359 43 2 4178 4535 75907094 75907451 3.260000e-111 412.0
24 TraesCS2B01G424900 chr5A 90.686 408 36 2 3774 4181 11886554 11886959 3.990000e-150 542.0
25 TraesCS2B01G424900 chr5A 91.392 395 32 2 3787 4181 245966721 245967113 1.440000e-149 540.0
26 TraesCS2B01G424900 chr5A 76.445 467 90 17 1288 1744 611564617 611565073 7.580000e-58 235.0
27 TraesCS2B01G424900 chr5A 79.167 264 47 5 1490 1749 505612871 505612612 4.660000e-40 176.0
28 TraesCS2B01G424900 chr5D 90.441 408 35 3 3774 4181 159641826 159641423 6.680000e-148 534.0
29 TraesCS2B01G424900 chr5D 88.184 347 40 1 4190 4535 9229816 9230162 3.260000e-111 412.0
30 TraesCS2B01G424900 chr5D 76.923 468 86 19 1288 1744 489905882 489906338 3.500000e-61 246.0
31 TraesCS2B01G424900 chrUn 88.022 359 41 2 4178 4535 71282729 71283086 1.510000e-114 424.0
32 TraesCS2B01G424900 chr7D 87.744 359 42 2 4178 4535 604992964 604993321 7.020000e-113 418.0
33 TraesCS2B01G424900 chr7D 88.252 349 36 4 4190 4535 627278888 627279234 3.260000e-111 412.0
34 TraesCS2B01G424900 chr7D 92.453 53 3 1 2972 3024 83761679 83761628 1.750000e-09 75.0
35 TraesCS2B01G424900 chr7D 92.453 53 3 1 2972 3024 366437086 366437137 1.750000e-09 75.0
36 TraesCS2B01G424900 chr7B 96.813 251 7 1 1 251 535240444 535240195 7.020000e-113 418.0
37 TraesCS2B01G424900 chr7B 95.635 252 9 2 4 254 489815752 489815502 1.960000e-108 403.0
38 TraesCS2B01G424900 chr7B 98.182 165 3 0 562 726 648648682 648648518 5.740000e-74 289.0
39 TraesCS2B01G424900 chr7B 98.171 164 3 0 562 725 1815877 1815714 2.060000e-73 287.0
40 TraesCS2B01G424900 chr7B 97.024 168 5 0 559 726 732116365 732116532 2.670000e-72 283.0
41 TraesCS2B01G424900 chr7B 90.566 53 4 1 2972 3024 73170761 73170710 8.140000e-08 69.4
42 TraesCS2B01G424900 chr4D 87.465 359 40 3 4178 4535 3499219 3499573 4.220000e-110 409.0
43 TraesCS2B01G424900 chr1A 95.618 251 9 1 4 254 570224585 570224337 7.070000e-108 401.0
44 TraesCS2B01G424900 chr1A 98.182 165 3 0 563 727 590716139 590716303 5.740000e-74 289.0
45 TraesCS2B01G424900 chr1A 95.977 174 5 2 562 734 578923336 578923508 9.610000e-72 281.0
46 TraesCS2B01G424900 chr1A 95.455 176 5 3 562 736 32272736 32272563 1.240000e-70 278.0
47 TraesCS2B01G424900 chr3B 94.902 255 13 0 1 255 567152245 567152499 2.540000e-107 399.0
48 TraesCS2B01G424900 chr3B 94.882 254 13 0 4 257 689001336 689001083 9.140000e-107 398.0
49 TraesCS2B01G424900 chr3B 97.590 166 4 0 560 725 383919714 383919879 7.430000e-73 285.0
50 TraesCS2B01G424900 chr5B 94.841 252 13 0 4 255 406525044 406524793 1.180000e-105 394.0
51 TraesCS2B01G424900 chr5B 77.892 389 68 15 1365 1744 604065390 604065769 4.560000e-55 226.0
52 TraesCS2B01G424900 chr5B 78.652 267 43 10 1490 1749 480294404 480294145 1.010000e-36 165.0
53 TraesCS2B01G424900 chr6B 93.536 263 16 1 1 263 653011270 653011531 1.530000e-104 390.0
54 TraesCS2B01G424900 chr6B 92.857 266 17 2 1 266 373892421 373892684 7.120000e-103 385.0
55 TraesCS2B01G424900 chr6B 92.453 53 3 1 2972 3024 617034151 617034100 1.750000e-09 75.0
56 TraesCS2B01G424900 chr6B 92.453 53 3 1 2972 3024 676708687 676708636 1.750000e-09 75.0
57 TraesCS2B01G424900 chr7A 97.619 168 4 0 559 726 18294462 18294629 5.740000e-74 289.0
58 TraesCS2B01G424900 chr7A 89.595 173 17 1 1977 2148 734894211 734894383 7.640000e-53 219.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G424900 chr2B 610923753 610928287 4534 False 8375.000 8375 100.00000 1 4535 1 chr2B.!!$F1 4534
1 TraesCS2B01G424900 chr2D 518612618 518615974 3356 False 1264.375 3788 92.24325 280 3773 4 chr2D.!!$F3 3493
2 TraesCS2B01G424900 chr2A 662904814 662907950 3136 False 2325.500 3738 94.49750 725 3773 2 chr2A.!!$F2 3048
3 TraesCS2B01G424900 chr6D 391684356 391685198 842 False 507.500 586 90.77150 3774 4535 2 chr6D.!!$F1 761

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
64 65 0.030369 GGTACGAGGCCTGACATACG 59.970 60.0 12.00 9.27 0.00 3.06 F
65 66 0.030369 GTACGAGGCCTGACATACGG 59.970 60.0 12.00 0.00 0.00 4.02 F
593 628 0.035056 ACTTCATGGGCACTAGCACC 60.035 55.0 0.00 0.00 46.13 5.01 F
696 731 0.102300 GGTTTACAATCATGCGCCCC 59.898 55.0 4.18 0.00 0.00 5.80 F
698 733 0.323816 TTTACAATCATGCGCCCCCA 60.324 50.0 4.18 0.00 0.00 4.96 F
2488 2578 0.036732 TCAAAGAAGGCGGTGCATCT 59.963 50.0 0.00 0.00 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1508 1572 2.048222 CCATGACGAGGTGCACGT 60.048 61.111 12.68 12.68 46.58 4.49 R
2035 2115 3.390967 TCTCTCCCATAATTCCGATGCAA 59.609 43.478 0.00 0.00 0.00 4.08 R
2213 2294 1.261619 GCGTCAAATATGCCCTTCTCG 59.738 52.381 0.00 0.00 33.68 4.04 R
2488 2578 1.816537 GCTGTCGATAGGCCTGTCA 59.183 57.895 26.94 12.87 42.82 3.58 R
2606 2696 4.032558 GCGTGTCAGCTTAGTTATACCAAC 59.967 45.833 0.00 0.00 0.00 3.77 R
3935 4082 0.166814 GCAAGGTTGATGCGTCAGTC 59.833 55.000 8.93 6.67 35.39 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 4.451150 GTCGCATGCGGGACCAGA 62.451 66.667 37.18 15.76 46.57 3.86
43 44 3.700970 TCGCATGCGGGACCAGAA 61.701 61.111 37.18 14.97 40.25 3.02
44 45 2.514592 CGCATGCGGGACCAGAAT 60.515 61.111 31.99 0.00 35.56 2.40
45 46 2.827051 CGCATGCGGGACCAGAATG 61.827 63.158 31.99 8.20 35.56 2.67
57 58 3.369381 CAGAATGGTACGAGGCCTG 57.631 57.895 12.00 5.11 0.00 4.85
58 59 0.824109 CAGAATGGTACGAGGCCTGA 59.176 55.000 12.00 0.00 0.00 3.86
59 60 0.824759 AGAATGGTACGAGGCCTGAC 59.175 55.000 12.00 5.04 0.00 3.51
60 61 0.535335 GAATGGTACGAGGCCTGACA 59.465 55.000 12.00 1.27 0.00 3.58
61 62 1.139058 GAATGGTACGAGGCCTGACAT 59.861 52.381 12.00 4.02 0.00 3.06
62 63 2.082140 ATGGTACGAGGCCTGACATA 57.918 50.000 12.00 0.00 0.00 2.29
63 64 1.108776 TGGTACGAGGCCTGACATAC 58.891 55.000 12.00 6.88 0.00 2.39
64 65 0.030369 GGTACGAGGCCTGACATACG 59.970 60.000 12.00 9.27 0.00 3.06
65 66 0.030369 GTACGAGGCCTGACATACGG 59.970 60.000 12.00 0.00 0.00 4.02
71 72 2.577059 CCTGACATACGGGCGTGT 59.423 61.111 0.00 0.00 38.29 4.49
72 73 1.809619 CCTGACATACGGGCGTGTG 60.810 63.158 0.00 0.00 41.90 3.82
73 74 1.809619 CTGACATACGGGCGTGTGG 60.810 63.158 0.00 0.00 40.75 4.17
74 75 2.510691 GACATACGGGCGTGTGGG 60.511 66.667 0.00 0.00 40.75 4.61
75 76 4.770874 ACATACGGGCGTGTGGGC 62.771 66.667 0.00 0.00 40.75 5.36
81 82 3.199891 GGGCGTGTGGGCGTTATC 61.200 66.667 0.00 0.00 43.46 1.75
82 83 2.435234 GGCGTGTGGGCGTTATCA 60.435 61.111 0.00 0.00 0.00 2.15
83 84 2.036006 GGCGTGTGGGCGTTATCAA 61.036 57.895 0.00 0.00 0.00 2.57
84 85 1.133869 GCGTGTGGGCGTTATCAAC 59.866 57.895 0.00 0.00 0.00 3.18
85 86 1.296056 GCGTGTGGGCGTTATCAACT 61.296 55.000 0.00 0.00 0.00 3.16
86 87 1.153353 CGTGTGGGCGTTATCAACTT 58.847 50.000 0.00 0.00 0.00 2.66
87 88 1.127951 CGTGTGGGCGTTATCAACTTC 59.872 52.381 0.00 0.00 0.00 3.01
88 89 1.127951 GTGTGGGCGTTATCAACTTCG 59.872 52.381 0.00 0.00 0.00 3.79
89 90 0.096454 GTGGGCGTTATCAACTTCGC 59.904 55.000 0.00 0.00 46.42 4.70
92 93 2.462503 GCGTTATCAACTTCGCCCA 58.537 52.632 0.00 0.00 42.33 5.36
93 94 0.096454 GCGTTATCAACTTCGCCCAC 59.904 55.000 0.00 0.00 42.33 4.61
94 95 1.434555 CGTTATCAACTTCGCCCACA 58.565 50.000 0.00 0.00 0.00 4.17
95 96 1.127951 CGTTATCAACTTCGCCCACAC 59.872 52.381 0.00 0.00 0.00 3.82
96 97 1.127951 GTTATCAACTTCGCCCACACG 59.872 52.381 0.00 0.00 0.00 4.49
97 98 1.017177 TATCAACTTCGCCCACACGC 61.017 55.000 0.00 0.00 0.00 5.34
98 99 3.276091 CAACTTCGCCCACACGCA 61.276 61.111 0.00 0.00 0.00 5.24
99 100 3.276846 AACTTCGCCCACACGCAC 61.277 61.111 0.00 0.00 0.00 5.34
148 149 4.789012 AAAAGATGTGTGTGGGCATTAG 57.211 40.909 0.00 0.00 0.00 1.73
149 150 3.439857 AAGATGTGTGTGGGCATTAGT 57.560 42.857 0.00 0.00 0.00 2.24
150 151 3.439857 AGATGTGTGTGGGCATTAGTT 57.560 42.857 0.00 0.00 0.00 2.24
151 152 3.084039 AGATGTGTGTGGGCATTAGTTG 58.916 45.455 0.00 0.00 0.00 3.16
152 153 2.356665 TGTGTGTGGGCATTAGTTGT 57.643 45.000 0.00 0.00 0.00 3.32
153 154 2.660572 TGTGTGTGGGCATTAGTTGTT 58.339 42.857 0.00 0.00 0.00 2.83
154 155 3.027412 TGTGTGTGGGCATTAGTTGTTT 58.973 40.909 0.00 0.00 0.00 2.83
155 156 3.449018 TGTGTGTGGGCATTAGTTGTTTT 59.551 39.130 0.00 0.00 0.00 2.43
156 157 3.801594 GTGTGTGGGCATTAGTTGTTTTG 59.198 43.478 0.00 0.00 0.00 2.44
157 158 2.799978 GTGTGGGCATTAGTTGTTTTGC 59.200 45.455 0.00 0.00 0.00 3.68
162 163 3.104843 GCATTAGTTGTTTTGCCCACA 57.895 42.857 0.00 0.00 0.00 4.17
163 164 2.799978 GCATTAGTTGTTTTGCCCACAC 59.200 45.455 0.00 0.00 0.00 3.82
164 165 3.492482 GCATTAGTTGTTTTGCCCACACT 60.492 43.478 0.00 0.00 0.00 3.55
165 166 4.692228 CATTAGTTGTTTTGCCCACACTT 58.308 39.130 0.00 0.00 0.00 3.16
166 167 5.737635 GCATTAGTTGTTTTGCCCACACTTA 60.738 40.000 0.00 0.00 0.00 2.24
167 168 5.508200 TTAGTTGTTTTGCCCACACTTAG 57.492 39.130 0.00 0.00 0.00 2.18
168 169 2.693074 AGTTGTTTTGCCCACACTTAGG 59.307 45.455 0.00 0.00 0.00 2.69
169 170 2.429250 GTTGTTTTGCCCACACTTAGGT 59.571 45.455 0.00 0.00 0.00 3.08
179 180 2.932663 CACTTAGGTGTGTGGGCTG 58.067 57.895 0.00 0.00 38.54 4.85
180 181 0.606401 CACTTAGGTGTGTGGGCTGG 60.606 60.000 0.00 0.00 38.54 4.85
181 182 1.060163 ACTTAGGTGTGTGGGCTGGT 61.060 55.000 0.00 0.00 0.00 4.00
182 183 0.110486 CTTAGGTGTGTGGGCTGGTT 59.890 55.000 0.00 0.00 0.00 3.67
183 184 0.179004 TTAGGTGTGTGGGCTGGTTG 60.179 55.000 0.00 0.00 0.00 3.77
184 185 2.690653 TAGGTGTGTGGGCTGGTTGC 62.691 60.000 0.00 0.00 41.94 4.17
185 186 2.519302 GTGTGTGGGCTGGTTGCT 60.519 61.111 0.00 0.00 42.39 3.91
186 187 2.519063 TGTGTGGGCTGGTTGCTG 60.519 61.111 0.00 0.00 42.39 4.41
187 188 2.519302 GTGTGGGCTGGTTGCTGT 60.519 61.111 0.00 0.00 42.39 4.40
188 189 2.203337 TGTGGGCTGGTTGCTGTC 60.203 61.111 0.00 0.00 42.39 3.51
189 190 2.985847 GTGGGCTGGTTGCTGTCC 60.986 66.667 0.00 0.00 42.39 4.02
190 191 3.497115 TGGGCTGGTTGCTGTCCA 61.497 61.111 0.00 0.00 42.39 4.02
191 192 2.036256 GGGCTGGTTGCTGTCCAT 59.964 61.111 0.00 0.00 42.39 3.41
192 193 2.345760 GGGCTGGTTGCTGTCCATG 61.346 63.158 0.00 0.00 42.39 3.66
193 194 2.570181 GCTGGTTGCTGTCCATGC 59.430 61.111 0.00 0.00 38.95 4.06
194 195 2.998279 GCTGGTTGCTGTCCATGCC 61.998 63.158 0.00 0.00 38.95 4.40
195 196 1.604308 CTGGTTGCTGTCCATGCCA 60.604 57.895 0.00 0.00 34.26 4.92
196 197 1.870055 CTGGTTGCTGTCCATGCCAC 61.870 60.000 0.00 0.00 34.26 5.01
197 198 1.902918 GGTTGCTGTCCATGCCACA 60.903 57.895 0.00 0.00 0.00 4.17
198 199 1.286880 GTTGCTGTCCATGCCACAC 59.713 57.895 0.00 0.00 0.00 3.82
199 200 2.260154 TTGCTGTCCATGCCACACG 61.260 57.895 0.00 0.00 0.00 4.49
200 201 3.434319 GCTGTCCATGCCACACGG 61.434 66.667 0.00 0.00 0.00 4.94
201 202 2.747460 CTGTCCATGCCACACGGG 60.747 66.667 0.00 0.00 40.85 5.28
202 203 4.343323 TGTCCATGCCACACGGGG 62.343 66.667 0.00 0.00 37.04 5.73
203 204 4.344865 GTCCATGCCACACGGGGT 62.345 66.667 0.00 0.00 37.04 4.95
220 221 2.327228 GTGTGTGGCACAACTACCC 58.673 57.895 23.90 9.38 46.28 3.69
221 222 1.227704 TGTGTGGCACAACTACCCG 60.228 57.895 23.90 0.00 44.16 5.28
222 223 1.070105 GTGTGGCACAACTACCCGA 59.930 57.895 23.90 0.00 44.16 5.14
223 224 0.321298 GTGTGGCACAACTACCCGAT 60.321 55.000 23.90 0.00 44.16 4.18
224 225 1.066716 GTGTGGCACAACTACCCGATA 60.067 52.381 23.90 0.00 44.16 2.92
225 226 1.066716 TGTGGCACAACTACCCGATAC 60.067 52.381 19.74 0.00 44.16 2.24
226 227 1.066716 GTGGCACAACTACCCGATACA 60.067 52.381 13.86 0.00 44.16 2.29
227 228 1.066716 TGGCACAACTACCCGATACAC 60.067 52.381 0.00 0.00 31.92 2.90
228 229 1.648504 GCACAACTACCCGATACACC 58.351 55.000 0.00 0.00 0.00 4.16
229 230 1.066716 GCACAACTACCCGATACACCA 60.067 52.381 0.00 0.00 0.00 4.17
230 231 2.613691 CACAACTACCCGATACACCAC 58.386 52.381 0.00 0.00 0.00 4.16
231 232 2.028839 CACAACTACCCGATACACCACA 60.029 50.000 0.00 0.00 0.00 4.17
232 233 2.028748 ACAACTACCCGATACACCACAC 60.029 50.000 0.00 0.00 0.00 3.82
233 234 0.813184 ACTACCCGATACACCACACG 59.187 55.000 0.00 0.00 0.00 4.49
234 235 0.813184 CTACCCGATACACCACACGT 59.187 55.000 0.00 0.00 0.00 4.49
247 248 0.438445 CACACGTGTGGCAGTTATCG 59.562 55.000 35.65 10.61 42.10 2.92
248 249 0.669318 ACACGTGTGGCAGTTATCGG 60.669 55.000 22.71 0.00 34.19 4.18
249 250 1.079405 ACGTGTGGCAGTTATCGGG 60.079 57.895 0.00 0.00 0.00 5.14
250 251 1.216977 CGTGTGGCAGTTATCGGGA 59.783 57.895 0.00 0.00 0.00 5.14
251 252 1.082117 CGTGTGGCAGTTATCGGGAC 61.082 60.000 0.00 0.00 0.00 4.46
252 253 0.743345 GTGTGGCAGTTATCGGGACC 60.743 60.000 0.00 0.00 0.00 4.46
253 254 1.153229 GTGGCAGTTATCGGGACCC 60.153 63.158 0.00 0.00 0.00 4.46
254 255 1.613928 TGGCAGTTATCGGGACCCA 60.614 57.895 12.15 0.00 0.00 4.51
255 256 0.986019 TGGCAGTTATCGGGACCCAT 60.986 55.000 12.15 6.03 0.00 4.00
256 257 0.182775 GGCAGTTATCGGGACCCATT 59.817 55.000 12.15 0.00 0.00 3.16
257 258 1.418637 GGCAGTTATCGGGACCCATTA 59.581 52.381 12.15 0.00 0.00 1.90
258 259 2.158726 GGCAGTTATCGGGACCCATTAA 60.159 50.000 12.15 4.69 0.00 1.40
259 260 3.497942 GGCAGTTATCGGGACCCATTAAT 60.498 47.826 12.15 0.64 0.00 1.40
260 261 4.142038 GCAGTTATCGGGACCCATTAATT 58.858 43.478 12.15 1.65 0.00 1.40
261 262 5.310451 GCAGTTATCGGGACCCATTAATTA 58.690 41.667 12.15 0.00 0.00 1.40
262 263 5.944007 GCAGTTATCGGGACCCATTAATTAT 59.056 40.000 12.15 0.00 0.00 1.28
263 264 6.093633 GCAGTTATCGGGACCCATTAATTATC 59.906 42.308 12.15 0.00 0.00 1.75
264 265 7.394816 CAGTTATCGGGACCCATTAATTATCT 58.605 38.462 12.15 0.00 0.00 1.98
265 266 7.883311 CAGTTATCGGGACCCATTAATTATCTT 59.117 37.037 12.15 0.00 0.00 2.40
266 267 8.445588 AGTTATCGGGACCCATTAATTATCTTT 58.554 33.333 12.15 0.00 0.00 2.52
267 268 9.729281 GTTATCGGGACCCATTAATTATCTTTA 57.271 33.333 12.15 0.00 0.00 1.85
268 269 9.729281 TTATCGGGACCCATTAATTATCTTTAC 57.271 33.333 12.15 0.00 0.00 2.01
269 270 6.225318 TCGGGACCCATTAATTATCTTTACG 58.775 40.000 12.15 0.00 0.00 3.18
270 271 5.993441 CGGGACCCATTAATTATCTTTACGT 59.007 40.000 12.15 0.00 0.00 3.57
271 272 6.484308 CGGGACCCATTAATTATCTTTACGTT 59.516 38.462 12.15 0.00 0.00 3.99
272 273 7.307573 CGGGACCCATTAATTATCTTTACGTTC 60.308 40.741 12.15 0.00 0.00 3.95
273 274 7.499895 GGGACCCATTAATTATCTTTACGTTCA 59.500 37.037 5.33 0.00 0.00 3.18
274 275 8.340443 GGACCCATTAATTATCTTTACGTTCAC 58.660 37.037 0.00 0.00 0.00 3.18
275 276 8.795842 ACCCATTAATTATCTTTACGTTCACA 57.204 30.769 0.00 0.00 0.00 3.58
276 277 9.403583 ACCCATTAATTATCTTTACGTTCACAT 57.596 29.630 0.00 0.00 0.00 3.21
277 278 9.878599 CCCATTAATTATCTTTACGTTCACATC 57.121 33.333 0.00 0.00 0.00 3.06
301 302 3.548770 TGGAGATGCTTTTAGATGCCAG 58.451 45.455 0.00 0.00 0.00 4.85
302 303 2.883386 GGAGATGCTTTTAGATGCCAGG 59.117 50.000 0.00 0.00 0.00 4.45
305 306 3.950395 AGATGCTTTTAGATGCCAGGTTC 59.050 43.478 0.00 0.00 0.00 3.62
343 344 2.669229 TGCCATGCGTGTCCACTG 60.669 61.111 4.96 0.00 0.00 3.66
344 345 2.358615 GCCATGCGTGTCCACTGA 60.359 61.111 4.96 0.00 0.00 3.41
345 346 2.393768 GCCATGCGTGTCCACTGAG 61.394 63.158 4.96 0.00 0.00 3.35
348 352 1.375140 ATGCGTGTCCACTGAGCAG 60.375 57.895 5.09 0.00 41.34 4.24
356 360 0.823356 TCCACTGAGCAGCCCAAAAC 60.823 55.000 0.00 0.00 0.00 2.43
361 365 2.106511 ACTGAGCAGCCCAAAACTTCTA 59.893 45.455 0.00 0.00 0.00 2.10
365 369 4.037923 TGAGCAGCCCAAAACTTCTAAAAG 59.962 41.667 0.00 0.00 38.54 2.27
367 371 3.653344 CAGCCCAAAACTTCTAAAAGGC 58.347 45.455 0.00 0.00 36.78 4.35
370 374 3.611766 GCCCAAAACTTCTAAAAGGCGAG 60.612 47.826 0.00 0.00 36.78 5.03
386 420 1.334054 CGAGGTTCGGTTTCACTACG 58.666 55.000 0.00 0.00 36.00 3.51
387 421 1.706443 GAGGTTCGGTTTCACTACGG 58.294 55.000 0.00 0.00 0.00 4.02
392 426 1.331214 TCGGTTTCACTACGGAAGGT 58.669 50.000 0.00 0.00 0.00 3.50
393 427 2.513753 TCGGTTTCACTACGGAAGGTA 58.486 47.619 0.00 0.00 0.00 3.08
402 436 3.999001 CACTACGGAAGGTAAAAGGTTCC 59.001 47.826 0.00 0.00 37.05 3.62
406 440 1.810755 GGAAGGTAAAAGGTTCCGCAG 59.189 52.381 0.00 0.00 30.84 5.18
439 474 4.063967 AAGGCCACATCGACGCGA 62.064 61.111 15.93 4.51 41.13 5.87
446 481 0.365523 CACATCGACGCGATTTCGTT 59.634 50.000 15.93 3.95 44.59 3.85
517 552 0.997196 GCTTCACCGACACCGAATAC 59.003 55.000 0.00 0.00 38.22 1.89
518 553 1.670674 GCTTCACCGACACCGAATACA 60.671 52.381 0.00 0.00 38.22 2.29
519 554 2.679450 CTTCACCGACACCGAATACAA 58.321 47.619 0.00 0.00 38.22 2.41
520 555 3.259064 CTTCACCGACACCGAATACAAT 58.741 45.455 0.00 0.00 38.22 2.71
521 556 2.883574 TCACCGACACCGAATACAATC 58.116 47.619 0.00 0.00 38.22 2.67
522 557 2.231721 TCACCGACACCGAATACAATCA 59.768 45.455 0.00 0.00 38.22 2.57
523 558 2.347452 CACCGACACCGAATACAATCAC 59.653 50.000 0.00 0.00 38.22 3.06
524 559 2.232941 ACCGACACCGAATACAATCACT 59.767 45.455 0.00 0.00 38.22 3.41
525 560 3.444742 ACCGACACCGAATACAATCACTA 59.555 43.478 0.00 0.00 38.22 2.74
526 561 4.082081 ACCGACACCGAATACAATCACTAA 60.082 41.667 0.00 0.00 38.22 2.24
527 562 4.503007 CCGACACCGAATACAATCACTAAG 59.497 45.833 0.00 0.00 38.22 2.18
528 563 4.026804 CGACACCGAATACAATCACTAAGC 60.027 45.833 0.00 0.00 38.22 3.09
529 564 4.827692 ACACCGAATACAATCACTAAGCA 58.172 39.130 0.00 0.00 0.00 3.91
530 565 5.428253 ACACCGAATACAATCACTAAGCAT 58.572 37.500 0.00 0.00 0.00 3.79
531 566 6.578944 ACACCGAATACAATCACTAAGCATA 58.421 36.000 0.00 0.00 0.00 3.14
532 567 7.045416 ACACCGAATACAATCACTAAGCATAA 58.955 34.615 0.00 0.00 0.00 1.90
533 568 7.224753 ACACCGAATACAATCACTAAGCATAAG 59.775 37.037 0.00 0.00 0.00 1.73
534 569 7.438160 CACCGAATACAATCACTAAGCATAAGA 59.562 37.037 0.00 0.00 0.00 2.10
535 570 8.150945 ACCGAATACAATCACTAAGCATAAGAT 58.849 33.333 0.00 0.00 0.00 2.40
536 571 9.639601 CCGAATACAATCACTAAGCATAAGATA 57.360 33.333 0.00 0.00 0.00 1.98
540 575 9.868277 ATACAATCACTAAGCATAAGATAGCTC 57.132 33.333 0.00 0.00 40.90 4.09
541 576 7.158021 ACAATCACTAAGCATAAGATAGCTCC 58.842 38.462 0.00 0.00 40.90 4.70
542 577 5.378292 TCACTAAGCATAAGATAGCTCCG 57.622 43.478 0.00 0.00 40.90 4.63
543 578 5.070685 TCACTAAGCATAAGATAGCTCCGA 58.929 41.667 0.00 0.00 40.90 4.55
544 579 5.535030 TCACTAAGCATAAGATAGCTCCGAA 59.465 40.000 0.00 0.00 40.90 4.30
545 580 6.209589 TCACTAAGCATAAGATAGCTCCGAAT 59.790 38.462 0.00 0.00 40.90 3.34
546 581 7.393515 TCACTAAGCATAAGATAGCTCCGAATA 59.606 37.037 0.00 0.00 40.90 1.75
547 582 7.486551 CACTAAGCATAAGATAGCTCCGAATAC 59.513 40.741 0.00 0.00 40.90 1.89
548 583 5.984695 AGCATAAGATAGCTCCGAATACA 57.015 39.130 0.00 0.00 36.00 2.29
549 584 6.346477 AGCATAAGATAGCTCCGAATACAA 57.654 37.500 0.00 0.00 36.00 2.41
550 585 6.940739 AGCATAAGATAGCTCCGAATACAAT 58.059 36.000 0.00 0.00 36.00 2.71
551 586 7.038659 AGCATAAGATAGCTCCGAATACAATC 58.961 38.462 0.00 0.00 36.00 2.67
552 587 6.813649 GCATAAGATAGCTCCGAATACAATCA 59.186 38.462 0.00 0.00 0.00 2.57
553 588 7.201478 GCATAAGATAGCTCCGAATACAATCAC 60.201 40.741 0.00 0.00 0.00 3.06
554 589 6.412362 AAGATAGCTCCGAATACAATCACT 57.588 37.500 0.00 0.00 0.00 3.41
555 590 5.777802 AGATAGCTCCGAATACAATCACTG 58.222 41.667 0.00 0.00 0.00 3.66
556 591 2.555199 AGCTCCGAATACAATCACTGC 58.445 47.619 0.00 0.00 0.00 4.40
557 592 1.258982 GCTCCGAATACAATCACTGCG 59.741 52.381 0.00 0.00 0.00 5.18
558 593 1.258982 CTCCGAATACAATCACTGCGC 59.741 52.381 0.00 0.00 0.00 6.09
559 594 1.006086 CCGAATACAATCACTGCGCA 58.994 50.000 10.98 10.98 0.00 6.09
560 595 1.599071 CCGAATACAATCACTGCGCAT 59.401 47.619 12.24 0.00 0.00 4.73
561 596 2.799978 CCGAATACAATCACTGCGCATA 59.200 45.455 12.24 0.00 0.00 3.14
562 597 3.247411 CCGAATACAATCACTGCGCATAA 59.753 43.478 12.24 0.00 0.00 1.90
563 598 4.260579 CCGAATACAATCACTGCGCATAAA 60.261 41.667 12.24 0.00 0.00 1.40
564 599 5.262422 CGAATACAATCACTGCGCATAAAA 58.738 37.500 12.24 0.00 0.00 1.52
565 600 5.736824 CGAATACAATCACTGCGCATAAAAA 59.263 36.000 12.24 0.00 0.00 1.94
587 622 4.961438 AAAATGAAACTTCATGGGCACT 57.039 36.364 5.72 0.00 46.60 4.40
588 623 6.418057 AAAAATGAAACTTCATGGGCACTA 57.582 33.333 5.72 0.00 46.60 2.74
589 624 5.649782 AAATGAAACTTCATGGGCACTAG 57.350 39.130 5.72 0.00 46.60 2.57
590 625 2.436417 TGAAACTTCATGGGCACTAGC 58.564 47.619 0.00 0.00 34.08 3.42
591 626 2.224744 TGAAACTTCATGGGCACTAGCA 60.225 45.455 0.00 0.00 35.69 3.49
592 627 4.366377 TGAAACTTCATGGGCACTAGCAC 61.366 47.826 0.00 0.00 37.14 4.40
593 628 0.035056 ACTTCATGGGCACTAGCACC 60.035 55.000 0.00 0.00 46.13 5.01
594 629 0.749454 CTTCATGGGCACTAGCACCC 60.749 60.000 12.83 12.83 46.13 4.61
598 633 4.778143 GGGCACTAGCACCCACGG 62.778 72.222 14.48 0.00 46.22 4.94
599 634 4.016706 GGCACTAGCACCCACGGT 62.017 66.667 0.00 0.00 44.61 4.83
600 635 2.032071 GCACTAGCACCCACGGTT 59.968 61.111 0.00 0.00 41.58 4.44
601 636 1.599797 GCACTAGCACCCACGGTTT 60.600 57.895 0.00 0.00 41.58 3.27
602 637 1.170290 GCACTAGCACCCACGGTTTT 61.170 55.000 0.00 0.00 41.58 2.43
603 638 0.872388 CACTAGCACCCACGGTTTTC 59.128 55.000 0.00 0.00 31.02 2.29
604 639 0.763035 ACTAGCACCCACGGTTTTCT 59.237 50.000 0.00 0.00 31.02 2.52
605 640 1.142262 ACTAGCACCCACGGTTTTCTT 59.858 47.619 0.00 0.00 31.02 2.52
606 641 1.535462 CTAGCACCCACGGTTTTCTTG 59.465 52.381 0.00 0.00 31.02 3.02
607 642 0.106918 AGCACCCACGGTTTTCTTGA 60.107 50.000 0.00 0.00 31.02 3.02
608 643 0.958822 GCACCCACGGTTTTCTTGAT 59.041 50.000 0.00 0.00 31.02 2.57
609 644 2.156098 GCACCCACGGTTTTCTTGATA 58.844 47.619 0.00 0.00 31.02 2.15
610 645 2.752903 GCACCCACGGTTTTCTTGATAT 59.247 45.455 0.00 0.00 31.02 1.63
611 646 3.942748 GCACCCACGGTTTTCTTGATATA 59.057 43.478 0.00 0.00 31.02 0.86
612 647 4.035208 GCACCCACGGTTTTCTTGATATAG 59.965 45.833 0.00 0.00 31.02 1.31
613 648 5.424757 CACCCACGGTTTTCTTGATATAGA 58.575 41.667 0.00 0.00 31.02 1.98
614 649 5.878116 CACCCACGGTTTTCTTGATATAGAA 59.122 40.000 0.00 0.00 31.02 2.10
615 650 6.037172 CACCCACGGTTTTCTTGATATAGAAG 59.963 42.308 0.00 0.00 32.65 2.85
616 651 6.070424 ACCCACGGTTTTCTTGATATAGAAGA 60.070 38.462 0.00 0.00 35.69 2.87
617 652 6.821665 CCCACGGTTTTCTTGATATAGAAGAA 59.178 38.462 5.62 5.62 37.60 2.52
618 653 7.011482 CCCACGGTTTTCTTGATATAGAAGAAG 59.989 40.741 8.62 2.73 39.86 2.85
619 654 7.402640 CACGGTTTTCTTGATATAGAAGAAGC 58.597 38.462 8.62 6.95 39.86 3.86
620 655 7.064609 CACGGTTTTCTTGATATAGAAGAAGCA 59.935 37.037 8.62 0.77 39.86 3.91
621 656 7.770897 ACGGTTTTCTTGATATAGAAGAAGCAT 59.229 33.333 8.62 0.00 39.86 3.79
622 657 8.279103 CGGTTTTCTTGATATAGAAGAAGCATC 58.721 37.037 8.62 0.00 39.86 3.91
623 658 8.563732 GGTTTTCTTGATATAGAAGAAGCATCC 58.436 37.037 8.62 7.22 39.86 3.51
624 659 8.563732 GTTTTCTTGATATAGAAGAAGCATCCC 58.436 37.037 8.62 0.00 39.86 3.85
625 660 7.623999 TTCTTGATATAGAAGAAGCATCCCT 57.376 36.000 5.62 0.00 35.07 4.20
626 661 7.238486 TCTTGATATAGAAGAAGCATCCCTC 57.762 40.000 0.00 0.00 0.00 4.30
627 662 6.784473 TCTTGATATAGAAGAAGCATCCCTCA 59.216 38.462 0.00 0.00 0.00 3.86
628 663 7.457218 TCTTGATATAGAAGAAGCATCCCTCAT 59.543 37.037 0.00 0.00 0.00 2.90
629 664 6.944096 TGATATAGAAGAAGCATCCCTCATG 58.056 40.000 0.00 0.00 35.29 3.07
630 665 6.727697 TGATATAGAAGAAGCATCCCTCATGA 59.272 38.462 0.00 0.00 33.80 3.07
631 666 3.842007 AGAAGAAGCATCCCTCATGAG 57.158 47.619 16.24 16.24 33.80 2.90
632 667 3.382278 AGAAGAAGCATCCCTCATGAGA 58.618 45.455 24.62 5.64 33.80 3.27
633 668 3.779183 AGAAGAAGCATCCCTCATGAGAA 59.221 43.478 24.62 11.97 33.80 2.87
634 669 4.412858 AGAAGAAGCATCCCTCATGAGAAT 59.587 41.667 24.62 13.73 33.80 2.40
635 670 4.792513 AGAAGCATCCCTCATGAGAATT 57.207 40.909 24.62 8.69 33.80 2.17
636 671 5.126699 AGAAGCATCCCTCATGAGAATTT 57.873 39.130 24.62 9.02 33.80 1.82
637 672 5.131784 AGAAGCATCCCTCATGAGAATTTC 58.868 41.667 24.62 15.97 33.80 2.17
638 673 4.515028 AGCATCCCTCATGAGAATTTCA 57.485 40.909 24.62 1.32 40.85 2.69
639 674 4.462133 AGCATCCCTCATGAGAATTTCAG 58.538 43.478 24.62 5.13 39.68 3.02
640 675 4.165565 AGCATCCCTCATGAGAATTTCAGA 59.834 41.667 24.62 8.82 39.68 3.27
641 676 4.885907 GCATCCCTCATGAGAATTTCAGAA 59.114 41.667 24.62 0.00 39.68 3.02
642 677 5.359009 GCATCCCTCATGAGAATTTCAGAAA 59.641 40.000 24.62 0.00 39.68 2.52
643 678 6.040616 GCATCCCTCATGAGAATTTCAGAAAT 59.959 38.462 24.62 2.20 39.68 2.17
644 679 7.417570 GCATCCCTCATGAGAATTTCAGAAATT 60.418 37.037 24.62 19.26 39.68 1.82
652 687 4.016113 GAATTTCAGAAATTCGTCCCCG 57.984 45.455 25.87 0.00 44.94 5.73
653 688 2.843401 TTTCAGAAATTCGTCCCCGA 57.157 45.000 0.00 0.00 42.41 5.14
654 689 2.088950 TTCAGAAATTCGTCCCCGAC 57.911 50.000 0.00 0.00 44.13 4.79
663 698 3.136123 GTCCCCGACGTGGATCGA 61.136 66.667 1.39 0.00 45.13 3.59
664 699 2.361483 TCCCCGACGTGGATCGAA 60.361 61.111 0.00 0.00 45.13 3.71
665 700 2.202703 CCCCGACGTGGATCGAAC 60.203 66.667 0.00 0.00 45.13 3.95
666 701 2.707849 CCCCGACGTGGATCGAACT 61.708 63.158 0.00 0.00 45.13 3.01
667 702 1.226603 CCCGACGTGGATCGAACTC 60.227 63.158 0.00 0.00 45.13 3.01
668 703 1.654954 CCCGACGTGGATCGAACTCT 61.655 60.000 0.00 0.00 45.13 3.24
669 704 0.523546 CCGACGTGGATCGAACTCTG 60.524 60.000 0.00 0.00 45.13 3.35
670 705 0.523546 CGACGTGGATCGAACTCTGG 60.524 60.000 0.00 0.00 45.13 3.86
671 706 0.526662 GACGTGGATCGAACTCTGGT 59.473 55.000 0.00 0.00 42.86 4.00
672 707 1.741706 GACGTGGATCGAACTCTGGTA 59.258 52.381 0.00 0.00 42.86 3.25
673 708 1.743958 ACGTGGATCGAACTCTGGTAG 59.256 52.381 0.00 0.00 42.86 3.18
674 709 1.743958 CGTGGATCGAACTCTGGTAGT 59.256 52.381 0.00 0.00 42.86 2.73
688 723 7.549147 ACTCTGGTAGTTAGGTTTACAATCA 57.451 36.000 0.00 0.00 33.35 2.57
689 724 8.147244 ACTCTGGTAGTTAGGTTTACAATCAT 57.853 34.615 0.00 0.00 33.35 2.45
690 725 8.041323 ACTCTGGTAGTTAGGTTTACAATCATG 58.959 37.037 0.00 0.00 33.35 3.07
691 726 6.821665 TCTGGTAGTTAGGTTTACAATCATGC 59.178 38.462 0.00 0.00 0.00 4.06
692 727 5.583061 TGGTAGTTAGGTTTACAATCATGCG 59.417 40.000 0.00 0.00 0.00 4.73
693 728 4.616181 AGTTAGGTTTACAATCATGCGC 57.384 40.909 0.00 0.00 0.00 6.09
694 729 3.377172 AGTTAGGTTTACAATCATGCGCC 59.623 43.478 4.18 0.00 0.00 6.53
695 730 1.102978 AGGTTTACAATCATGCGCCC 58.897 50.000 4.18 0.00 0.00 6.13
696 731 0.102300 GGTTTACAATCATGCGCCCC 59.898 55.000 4.18 0.00 0.00 5.80
697 732 0.102300 GTTTACAATCATGCGCCCCC 59.898 55.000 4.18 0.00 0.00 5.40
698 733 0.323816 TTTACAATCATGCGCCCCCA 60.324 50.000 4.18 0.00 0.00 4.96
699 734 0.323816 TTACAATCATGCGCCCCCAA 60.324 50.000 4.18 0.00 0.00 4.12
700 735 1.034838 TACAATCATGCGCCCCCAAC 61.035 55.000 4.18 0.00 0.00 3.77
701 736 2.759560 AATCATGCGCCCCCAACC 60.760 61.111 4.18 0.00 0.00 3.77
702 737 3.598747 AATCATGCGCCCCCAACCA 62.599 57.895 4.18 0.00 0.00 3.67
713 748 3.924507 CCAACCACTGGGCTATGC 58.075 61.111 0.00 0.00 42.17 3.14
723 758 2.109181 GGCTATGCCCACGTCCTC 59.891 66.667 0.00 0.00 44.06 3.71
732 767 1.021390 CCCACGTCCTCAATCACTGC 61.021 60.000 0.00 0.00 0.00 4.40
760 795 0.535335 TAGCGTGATTCCGAGGCTTT 59.465 50.000 0.00 0.00 36.10 3.51
761 796 1.021390 AGCGTGATTCCGAGGCTTTG 61.021 55.000 0.00 0.00 30.49 2.77
762 797 1.982073 GCGTGATTCCGAGGCTTTGG 61.982 60.000 0.00 0.00 0.00 3.28
763 798 1.803289 GTGATTCCGAGGCTTTGGC 59.197 57.895 0.00 0.00 37.82 4.52
764 799 1.745115 TGATTCCGAGGCTTTGGCG 60.745 57.895 0.00 0.00 39.81 5.69
765 800 1.449601 GATTCCGAGGCTTTGGCGA 60.450 57.895 0.00 0.00 39.81 5.54
766 801 1.432270 GATTCCGAGGCTTTGGCGAG 61.432 60.000 0.00 0.00 39.81 5.03
830 869 2.424956 GCATAAAGCTCAAACCCCAGAG 59.575 50.000 0.00 0.00 41.15 3.35
931 974 2.172679 GGATAACCCCCGCTTCAAAAA 58.827 47.619 0.00 0.00 0.00 1.94
938 981 0.684535 CCCGCTTCAAAAACCCCATT 59.315 50.000 0.00 0.00 0.00 3.16
999 1057 2.096248 AGAGAGGAGGAAACTGTAGCG 58.904 52.381 0.00 0.00 44.43 4.26
1039 1097 3.204306 AGACGTACGAGATACCCATCA 57.796 47.619 24.41 0.00 33.21 3.07
1206 1270 3.721706 CCCCTGCCGAGCTTCCTT 61.722 66.667 0.00 0.00 0.00 3.36
1508 1572 2.697761 CCTTCGAGGACGCCGAGAA 61.698 63.158 0.00 0.00 37.67 2.87
1807 1877 4.201657 TGATCCCACACATGACATGATTC 58.798 43.478 22.19 7.86 0.00 2.52
1836 1906 2.942376 AGTCTCAATGCAACACGAACAA 59.058 40.909 0.00 0.00 0.00 2.83
1917 1994 9.770097 GGATAATTCAGATAGACAATTCAGTCA 57.230 33.333 0.00 0.00 40.98 3.41
1923 2000 9.506018 TTCAGATAGACAATTCAGTCAAATTCA 57.494 29.630 0.00 0.00 40.98 2.57
1924 2001 9.159364 TCAGATAGACAATTCAGTCAAATTCAG 57.841 33.333 0.00 0.00 40.98 3.02
1925 2002 8.944029 CAGATAGACAATTCAGTCAAATTCAGT 58.056 33.333 0.00 0.00 40.98 3.41
1926 2003 9.512588 AGATAGACAATTCAGTCAAATTCAGTT 57.487 29.630 0.00 0.00 40.98 3.16
1939 2016 7.811236 AGTCAAATTCAGTTCAACATTGCATAG 59.189 33.333 0.00 0.00 0.00 2.23
2035 2115 1.762957 ACTATGTGGCGCCAGAAGTAT 59.237 47.619 33.73 20.44 0.00 2.12
2091 2171 1.759445 AGCGCTGGAGTGATCTTGTAT 59.241 47.619 10.39 0.00 0.00 2.29
2109 2189 9.698309 ATCTTGTATATTCTCTTATGTGGTTCG 57.302 33.333 0.00 0.00 0.00 3.95
2213 2294 5.678132 ATTTGCAAATTTGAGCAGAAACC 57.322 34.783 22.31 1.28 42.39 3.27
2415 2501 9.155975 GAAGAGTTCTTCTGCATTTGTATAGAA 57.844 33.333 13.32 0.00 46.59 2.10
2488 2578 0.036732 TCAAAGAAGGCGGTGCATCT 59.963 50.000 0.00 0.00 0.00 2.90
2560 2650 5.334569 GGCGATGAACAAGCTAAAACAACTA 60.335 40.000 0.00 0.00 0.00 2.24
2577 2667 5.484715 ACAACTAGCGCTTAAGGTGAATTA 58.515 37.500 27.67 0.00 34.43 1.40
2593 2683 7.405292 AGGTGAATTATCCTTGACAAAGATGA 58.595 34.615 9.18 2.10 35.19 2.92
2596 2686 8.734386 GTGAATTATCCTTGACAAAGATGACTT 58.266 33.333 9.18 1.26 35.19 3.01
2606 2696 8.763049 TTGACAAAGATGACTTCTACTATGTG 57.237 34.615 0.00 0.00 35.05 3.21
2790 2880 7.454260 AACAAAGTTAGGATCAAAGATCACC 57.546 36.000 9.02 0.00 0.00 4.02
2793 2883 5.677319 AGTTAGGATCAAAGATCACCGAA 57.323 39.130 9.02 0.00 0.00 4.30
2870 2960 8.095169 CACCCTTCACCATAGGTTAAGTATATC 58.905 40.741 8.75 0.00 35.75 1.63
2929 3019 2.093764 AGACAAGAGTGGCAGCATAGAC 60.094 50.000 0.00 0.00 33.83 2.59
3091 3181 5.597594 TGCATGCATCACCATAAATTAAGGA 59.402 36.000 18.46 0.00 0.00 3.36
3092 3182 6.097981 TGCATGCATCACCATAAATTAAGGAA 59.902 34.615 18.46 0.00 0.00 3.36
3155 3245 6.119144 AGTACCAATCGTGTTATTGAATGC 57.881 37.500 0.00 0.00 38.84 3.56
3198 3288 3.214697 TGTGCCGTTCTTGCATTATTG 57.785 42.857 0.00 0.00 41.46 1.90
3264 3402 8.577296 GTCAGCAGGTACTAATCATAGACAATA 58.423 37.037 0.00 0.00 36.02 1.90
3305 3443 8.904834 TGTAGGTACATATCAAGAGAAGAACTC 58.095 37.037 0.00 0.00 45.22 3.01
3414 3552 3.963476 TTTCCCCTCACCTTTCTTTCA 57.037 42.857 0.00 0.00 0.00 2.69
3467 3605 6.828785 ACTGAACATATTTAACCCCTGTCATC 59.171 38.462 0.00 0.00 0.00 2.92
3525 3663 6.070656 AGAGTTTGTGGAAATGATGAGGAAA 58.929 36.000 0.00 0.00 0.00 3.13
3665 3807 9.838975 CTTGCAATGTGTGTGTATATAGAAAAA 57.161 29.630 0.00 0.00 0.00 1.94
3685 3827 6.365970 AAAACAATGTTGCCATATACCCAA 57.634 33.333 0.00 0.00 0.00 4.12
3708 3850 7.484959 CCAAAATACTTCTTTTCCTTCGTATGC 59.515 37.037 0.00 0.00 0.00 3.14
3773 3920 7.220108 CCTGCACTTAAACAAAGTTACAGAAAC 59.780 37.037 14.68 0.00 46.61 2.78
3785 3932 6.105397 AGTTACAGAAACTGTTAATCCGGA 57.895 37.500 6.61 6.61 46.90 5.14
3800 3947 3.899052 TCCGGACCTAATACCAAACAG 57.101 47.619 0.00 0.00 0.00 3.16
3827 3974 3.016736 GCAGCCAAGCCTAACATCTAAA 58.983 45.455 0.00 0.00 0.00 1.85
3828 3975 3.065925 GCAGCCAAGCCTAACATCTAAAG 59.934 47.826 0.00 0.00 0.00 1.85
3829 3976 4.517285 CAGCCAAGCCTAACATCTAAAGA 58.483 43.478 0.00 0.00 0.00 2.52
3830 3977 4.333926 CAGCCAAGCCTAACATCTAAAGAC 59.666 45.833 0.00 0.00 0.00 3.01
3831 3978 3.628032 GCCAAGCCTAACATCTAAAGACC 59.372 47.826 0.00 0.00 0.00 3.85
3874 4021 2.966732 CGGGTATGGGGCACACACT 61.967 63.158 0.00 0.00 0.00 3.55
3875 4022 1.378514 GGGTATGGGGCACACACTG 60.379 63.158 0.00 0.00 0.00 3.66
3932 4079 1.905215 CCACCACTCCATCTTCAGAGT 59.095 52.381 0.00 0.00 44.12 3.24
3935 4082 2.304180 ACCACTCCATCTTCAGAGTTGG 59.696 50.000 0.00 0.00 41.38 3.77
3958 4105 3.814268 CGCATCAACCTTGCCCGG 61.814 66.667 0.00 0.00 36.75 5.73
3959 4106 2.676471 GCATCAACCTTGCCCGGT 60.676 61.111 0.00 0.00 39.48 5.28
3967 4114 2.660064 CCTTGCCCGGTCTAGCTGT 61.660 63.158 0.00 0.00 0.00 4.40
3968 4115 1.448540 CTTGCCCGGTCTAGCTGTG 60.449 63.158 0.00 0.00 0.00 3.66
3976 4123 1.514443 GTCTAGCTGTGGTCGACGC 60.514 63.158 9.92 7.28 0.00 5.19
3998 4145 4.280494 ACGACGCCAGACAACGCT 62.280 61.111 0.00 0.00 0.00 5.07
4004 4151 1.019278 CGCCAGACAACGCTACCATT 61.019 55.000 0.00 0.00 0.00 3.16
4033 4180 2.562912 CATCAACACACGCCCAGC 59.437 61.111 0.00 0.00 0.00 4.85
4075 4222 3.512516 GCTGAGACCCGCCATTGC 61.513 66.667 0.00 0.00 0.00 3.56
4086 4233 2.860293 CCATTGCCGACGTGTCAC 59.140 61.111 0.00 0.00 0.00 3.67
4097 4244 2.891221 CGTGTCACATGCAACGCCA 61.891 57.895 3.42 0.00 0.00 5.69
4130 4277 1.621814 GAACACCACCTGCTACCACTA 59.378 52.381 0.00 0.00 0.00 2.74
4133 4280 1.204941 CACCACCTGCTACCACTAGTC 59.795 57.143 0.00 0.00 0.00 2.59
4142 4289 1.220750 CTACCACTAGTCCCATCCCCT 59.779 57.143 0.00 0.00 0.00 4.79
4151 4298 2.276740 CCATCCCCTTCCACCTGC 59.723 66.667 0.00 0.00 0.00 4.85
4227 4459 3.123620 CCTCAGCTGCGCCTTCAC 61.124 66.667 9.47 0.00 0.00 3.18
4230 4462 2.816958 CAGCTGCGCCTTCACGAT 60.817 61.111 4.18 0.00 34.06 3.73
4237 4469 1.298859 GCGCCTTCACGATGGAAAGT 61.299 55.000 0.00 0.00 34.06 2.66
4307 4539 1.568118 CCCCCGGACCCAAAGTACAT 61.568 60.000 0.73 0.00 0.00 2.29
4310 4542 1.211949 CCCGGACCCAAAGTACATCAT 59.788 52.381 0.73 0.00 0.00 2.45
4323 4555 1.219773 ACATCATCAGGGCTCACCAT 58.780 50.000 0.00 0.00 43.89 3.55
4329 4561 4.101448 AGGGCTCACCATCACCGC 62.101 66.667 0.00 0.00 43.89 5.68
4370 4602 2.041686 GGACGACGAGAGAGGCAGT 61.042 63.158 0.00 0.00 0.00 4.40
4408 4640 1.153745 AGATCTGACGCAACGGAGC 60.154 57.895 0.00 0.00 32.55 4.70
4410 4642 1.005037 ATCTGACGCAACGGAGCAA 60.005 52.632 2.33 0.00 0.00 3.91
4411 4643 1.016130 ATCTGACGCAACGGAGCAAG 61.016 55.000 2.33 0.00 0.00 4.01
4414 4646 4.927782 ACGCAACGGAGCAAGGCA 62.928 61.111 2.33 0.00 0.00 4.75
4418 4650 2.594592 AACGGAGCAAGGCACCAC 60.595 61.111 5.57 0.00 39.20 4.16
4435 4667 4.760047 CGGCCGGACTCCACCAAG 62.760 72.222 20.10 0.00 0.00 3.61
4442 4674 2.122547 ACTCCACCAAGGACCCGT 60.123 61.111 0.00 0.00 43.07 5.28
4448 4680 3.246112 CCAAGGACCCGTCACCCA 61.246 66.667 0.00 0.00 0.00 4.51
4449 4681 2.032071 CAAGGACCCGTCACCCAC 59.968 66.667 0.00 0.00 0.00 4.61
4471 4704 4.034258 CAAGCACACTGGCCAGCG 62.034 66.667 33.06 26.18 0.00 5.18
4483 4716 3.434319 CCAGCGTCGCCTGCAAAT 61.434 61.111 14.86 0.00 33.85 2.32
4486 4719 2.202349 GCGTCGCCTGCAAATGTC 60.202 61.111 5.75 0.00 0.00 3.06
4495 4728 3.737172 GCAAATGTCGCCAGCCGT 61.737 61.111 0.00 0.00 38.35 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.950794 TTCTGGTCCCGCATGCGAC 62.951 63.158 39.90 29.34 42.83 5.19
26 27 3.030168 ATTCTGGTCCCGCATGCGA 62.030 57.895 39.90 19.97 42.83 5.10
27 28 2.514592 ATTCTGGTCCCGCATGCG 60.515 61.111 32.60 32.60 39.44 4.73
28 29 2.484062 CCATTCTGGTCCCGCATGC 61.484 63.158 7.91 7.91 31.35 4.06
29 30 3.831883 CCATTCTGGTCCCGCATG 58.168 61.111 0.00 0.00 31.35 4.06
38 39 0.179073 CAGGCCTCGTACCATTCTGG 60.179 60.000 0.00 0.00 45.02 3.86
39 40 0.824109 TCAGGCCTCGTACCATTCTG 59.176 55.000 0.00 0.00 0.00 3.02
40 41 0.824759 GTCAGGCCTCGTACCATTCT 59.175 55.000 0.00 0.00 0.00 2.40
41 42 0.535335 TGTCAGGCCTCGTACCATTC 59.465 55.000 0.00 0.00 0.00 2.67
42 43 1.204146 ATGTCAGGCCTCGTACCATT 58.796 50.000 0.00 0.00 0.00 3.16
43 44 1.687123 GTATGTCAGGCCTCGTACCAT 59.313 52.381 0.00 3.26 0.00 3.55
44 45 1.108776 GTATGTCAGGCCTCGTACCA 58.891 55.000 0.00 0.00 0.00 3.25
45 46 0.030369 CGTATGTCAGGCCTCGTACC 59.970 60.000 0.00 0.00 0.00 3.34
46 47 0.030369 CCGTATGTCAGGCCTCGTAC 59.970 60.000 0.00 8.08 0.00 3.67
47 48 1.105167 CCCGTATGTCAGGCCTCGTA 61.105 60.000 0.00 0.00 0.00 3.43
48 49 2.423898 CCCGTATGTCAGGCCTCGT 61.424 63.158 0.00 0.00 0.00 4.18
49 50 2.417516 CCCGTATGTCAGGCCTCG 59.582 66.667 0.00 1.29 0.00 4.63
50 51 2.109181 GCCCGTATGTCAGGCCTC 59.891 66.667 0.00 0.00 41.00 4.70
51 52 3.849951 CGCCCGTATGTCAGGCCT 61.850 66.667 0.00 0.00 44.13 5.19
52 53 4.157120 ACGCCCGTATGTCAGGCC 62.157 66.667 0.00 0.00 44.13 5.19
53 54 2.890474 CACGCCCGTATGTCAGGC 60.890 66.667 0.00 0.00 43.53 4.85
54 55 1.809619 CACACGCCCGTATGTCAGG 60.810 63.158 0.00 0.00 0.00 3.86
55 56 1.809619 CCACACGCCCGTATGTCAG 60.810 63.158 0.00 0.00 0.00 3.51
56 57 2.263227 CCACACGCCCGTATGTCA 59.737 61.111 0.00 0.00 0.00 3.58
57 58 2.510691 CCCACACGCCCGTATGTC 60.511 66.667 0.00 0.00 0.00 3.06
58 59 4.770874 GCCCACACGCCCGTATGT 62.771 66.667 0.00 0.00 0.00 2.29
64 65 3.199891 GATAACGCCCACACGCCC 61.200 66.667 0.00 0.00 36.19 6.13
65 66 2.036006 TTGATAACGCCCACACGCC 61.036 57.895 0.00 0.00 36.19 5.68
66 67 1.133869 GTTGATAACGCCCACACGC 59.866 57.895 0.00 0.00 36.19 5.34
67 68 1.127951 GAAGTTGATAACGCCCACACG 59.872 52.381 0.00 0.00 36.23 4.49
68 69 1.127951 CGAAGTTGATAACGCCCACAC 59.872 52.381 0.00 0.00 36.23 3.82
69 70 1.434555 CGAAGTTGATAACGCCCACA 58.565 50.000 0.00 0.00 36.23 4.17
70 71 0.096454 GCGAAGTTGATAACGCCCAC 59.904 55.000 0.00 0.00 44.27 4.61
71 72 2.462503 GCGAAGTTGATAACGCCCA 58.537 52.632 0.00 0.00 44.27 5.36
75 76 1.127951 GTGTGGGCGAAGTTGATAACG 59.872 52.381 0.00 0.00 36.23 3.18
76 77 1.127951 CGTGTGGGCGAAGTTGATAAC 59.872 52.381 0.00 0.00 0.00 1.89
77 78 1.434555 CGTGTGGGCGAAGTTGATAA 58.565 50.000 0.00 0.00 0.00 1.75
78 79 1.017177 GCGTGTGGGCGAAGTTGATA 61.017 55.000 0.00 0.00 0.00 2.15
79 80 2.325082 GCGTGTGGGCGAAGTTGAT 61.325 57.895 0.00 0.00 0.00 2.57
80 81 2.970324 GCGTGTGGGCGAAGTTGA 60.970 61.111 0.00 0.00 0.00 3.18
81 82 3.276091 TGCGTGTGGGCGAAGTTG 61.276 61.111 0.00 0.00 35.06 3.16
82 83 3.276846 GTGCGTGTGGGCGAAGTT 61.277 61.111 0.00 0.00 35.06 2.66
106 107 4.798682 TTCCTCCCGGCCCCTCTC 62.799 72.222 0.00 0.00 0.00 3.20
107 108 3.883822 TTTTCCTCCCGGCCCCTCT 62.884 63.158 0.00 0.00 0.00 3.69
108 109 2.914310 TTTTTCCTCCCGGCCCCTC 61.914 63.158 0.00 0.00 0.00 4.30
109 110 2.861974 TTTTTCCTCCCGGCCCCT 60.862 61.111 0.00 0.00 0.00 4.79
126 127 4.588528 ACTAATGCCCACACACATCTTTTT 59.411 37.500 0.00 0.00 0.00 1.94
127 128 4.151883 ACTAATGCCCACACACATCTTTT 58.848 39.130 0.00 0.00 0.00 2.27
128 129 3.766545 ACTAATGCCCACACACATCTTT 58.233 40.909 0.00 0.00 0.00 2.52
129 130 3.439857 ACTAATGCCCACACACATCTT 57.560 42.857 0.00 0.00 0.00 2.40
130 131 3.084039 CAACTAATGCCCACACACATCT 58.916 45.455 0.00 0.00 0.00 2.90
131 132 2.819608 ACAACTAATGCCCACACACATC 59.180 45.455 0.00 0.00 0.00 3.06
132 133 2.875296 ACAACTAATGCCCACACACAT 58.125 42.857 0.00 0.00 0.00 3.21
133 134 2.356665 ACAACTAATGCCCACACACA 57.643 45.000 0.00 0.00 0.00 3.72
134 135 3.726291 AAACAACTAATGCCCACACAC 57.274 42.857 0.00 0.00 0.00 3.82
135 136 3.739519 GCAAAACAACTAATGCCCACACA 60.740 43.478 0.00 0.00 32.73 3.72
136 137 2.799978 GCAAAACAACTAATGCCCACAC 59.200 45.455 0.00 0.00 32.73 3.82
137 138 3.104843 GCAAAACAACTAATGCCCACA 57.895 42.857 0.00 0.00 32.73 4.17
142 143 2.799978 GTGTGGGCAAAACAACTAATGC 59.200 45.455 0.00 0.00 38.06 3.56
143 144 4.320608 AGTGTGGGCAAAACAACTAATG 57.679 40.909 0.00 0.00 0.00 1.90
144 145 5.010617 CCTAAGTGTGGGCAAAACAACTAAT 59.989 40.000 0.00 0.00 0.00 1.73
145 146 4.339814 CCTAAGTGTGGGCAAAACAACTAA 59.660 41.667 0.00 0.00 0.00 2.24
146 147 3.886505 CCTAAGTGTGGGCAAAACAACTA 59.113 43.478 0.00 0.00 0.00 2.24
147 148 2.693074 CCTAAGTGTGGGCAAAACAACT 59.307 45.455 0.00 0.00 0.00 3.16
148 149 2.429250 ACCTAAGTGTGGGCAAAACAAC 59.571 45.455 0.00 0.00 0.00 3.32
149 150 2.428890 CACCTAAGTGTGGGCAAAACAA 59.571 45.455 0.00 0.00 39.30 2.83
150 151 2.028130 CACCTAAGTGTGGGCAAAACA 58.972 47.619 0.00 0.00 39.30 2.83
151 152 2.793278 CACCTAAGTGTGGGCAAAAC 57.207 50.000 0.00 0.00 39.30 2.43
162 163 1.060163 ACCAGCCCACACACCTAAGT 61.060 55.000 0.00 0.00 0.00 2.24
163 164 0.110486 AACCAGCCCACACACCTAAG 59.890 55.000 0.00 0.00 0.00 2.18
164 165 0.179004 CAACCAGCCCACACACCTAA 60.179 55.000 0.00 0.00 0.00 2.69
165 166 1.454104 CAACCAGCCCACACACCTA 59.546 57.895 0.00 0.00 0.00 3.08
166 167 2.195683 CAACCAGCCCACACACCT 59.804 61.111 0.00 0.00 0.00 4.00
167 168 3.605664 GCAACCAGCCCACACACC 61.606 66.667 0.00 0.00 37.23 4.16
176 177 2.570181 GCATGGACAGCAACCAGC 59.430 61.111 0.00 0.00 40.89 4.85
177 178 1.604308 TGGCATGGACAGCAACCAG 60.604 57.895 0.00 0.00 40.89 4.00
178 179 1.902918 GTGGCATGGACAGCAACCA 60.903 57.895 0.00 0.00 41.83 3.67
179 180 1.902918 TGTGGCATGGACAGCAACC 60.903 57.895 0.00 0.00 35.00 3.77
180 181 1.286880 GTGTGGCATGGACAGCAAC 59.713 57.895 0.00 0.00 36.45 4.17
181 182 2.260154 CGTGTGGCATGGACAGCAA 61.260 57.895 0.00 0.00 0.00 3.91
182 183 2.669229 CGTGTGGCATGGACAGCA 60.669 61.111 0.00 0.00 0.00 4.41
183 184 3.434319 CCGTGTGGCATGGACAGC 61.434 66.667 1.31 0.00 42.73 4.40
184 185 2.747460 CCCGTGTGGCATGGACAG 60.747 66.667 8.81 0.00 42.73 3.51
185 186 4.343323 CCCCGTGTGGCATGGACA 62.343 66.667 8.81 0.00 42.73 4.02
186 187 4.344865 ACCCCGTGTGGCATGGAC 62.345 66.667 8.81 0.00 42.73 4.02
187 188 4.343323 CACCCCGTGTGGCATGGA 62.343 66.667 8.81 0.00 42.73 3.41
202 203 1.503818 CGGGTAGTTGTGCCACACAC 61.504 60.000 0.00 0.00 44.47 3.82
203 204 1.227704 CGGGTAGTTGTGCCACACA 60.228 57.895 0.00 0.00 43.02 3.72
204 205 0.321298 ATCGGGTAGTTGTGCCACAC 60.321 55.000 0.00 0.00 34.56 3.82
205 206 1.066716 GTATCGGGTAGTTGTGCCACA 60.067 52.381 0.00 0.00 0.00 4.17
206 207 1.066716 TGTATCGGGTAGTTGTGCCAC 60.067 52.381 0.00 0.00 0.00 5.01
207 208 1.066716 GTGTATCGGGTAGTTGTGCCA 60.067 52.381 0.00 0.00 0.00 4.92
208 209 1.648504 GTGTATCGGGTAGTTGTGCC 58.351 55.000 0.00 0.00 0.00 5.01
209 210 1.066716 TGGTGTATCGGGTAGTTGTGC 60.067 52.381 0.00 0.00 0.00 4.57
210 211 2.028839 TGTGGTGTATCGGGTAGTTGTG 60.029 50.000 0.00 0.00 0.00 3.33
211 212 2.028748 GTGTGGTGTATCGGGTAGTTGT 60.029 50.000 0.00 0.00 0.00 3.32
212 213 2.613691 GTGTGGTGTATCGGGTAGTTG 58.386 52.381 0.00 0.00 0.00 3.16
213 214 1.203052 CGTGTGGTGTATCGGGTAGTT 59.797 52.381 0.00 0.00 0.00 2.24
214 215 0.813184 CGTGTGGTGTATCGGGTAGT 59.187 55.000 0.00 0.00 0.00 2.73
215 216 0.813184 ACGTGTGGTGTATCGGGTAG 59.187 55.000 0.00 0.00 0.00 3.18
216 217 0.527113 CACGTGTGGTGTATCGGGTA 59.473 55.000 7.58 0.00 41.89 3.69
217 218 1.290955 CACGTGTGGTGTATCGGGT 59.709 57.895 7.58 0.00 41.89 5.28
218 219 4.178861 CACGTGTGGTGTATCGGG 57.821 61.111 7.58 0.00 41.89 5.14
228 229 0.438445 CGATAACTGCCACACGTGTG 59.562 55.000 36.13 36.13 45.23 3.82
229 230 0.669318 CCGATAACTGCCACACGTGT 60.669 55.000 17.22 17.22 0.00 4.49
230 231 1.358725 CCCGATAACTGCCACACGTG 61.359 60.000 15.48 15.48 0.00 4.49
231 232 1.079405 CCCGATAACTGCCACACGT 60.079 57.895 0.00 0.00 0.00 4.49
232 233 1.082117 GTCCCGATAACTGCCACACG 61.082 60.000 0.00 0.00 0.00 4.49
233 234 0.743345 GGTCCCGATAACTGCCACAC 60.743 60.000 0.00 0.00 0.00 3.82
234 235 1.600107 GGTCCCGATAACTGCCACA 59.400 57.895 0.00 0.00 0.00 4.17
235 236 1.153229 GGGTCCCGATAACTGCCAC 60.153 63.158 0.00 0.00 0.00 5.01
236 237 0.986019 ATGGGTCCCGATAACTGCCA 60.986 55.000 2.65 0.00 0.00 4.92
237 238 0.182775 AATGGGTCCCGATAACTGCC 59.817 55.000 2.65 0.00 0.00 4.85
238 239 2.922740 TAATGGGTCCCGATAACTGC 57.077 50.000 2.65 0.00 0.00 4.40
239 240 7.394816 AGATAATTAATGGGTCCCGATAACTG 58.605 38.462 2.65 0.00 0.00 3.16
240 241 7.569599 AGATAATTAATGGGTCCCGATAACT 57.430 36.000 2.65 0.00 0.00 2.24
241 242 8.631480 AAAGATAATTAATGGGTCCCGATAAC 57.369 34.615 2.65 0.00 0.00 1.89
242 243 9.729281 GTAAAGATAATTAATGGGTCCCGATAA 57.271 33.333 2.65 5.57 0.00 1.75
243 244 8.036575 CGTAAAGATAATTAATGGGTCCCGATA 58.963 37.037 2.65 0.00 0.00 2.92
244 245 6.877322 CGTAAAGATAATTAATGGGTCCCGAT 59.123 38.462 2.65 0.00 0.00 4.18
245 246 6.183360 ACGTAAAGATAATTAATGGGTCCCGA 60.183 38.462 2.65 0.00 0.00 5.14
246 247 5.993441 ACGTAAAGATAATTAATGGGTCCCG 59.007 40.000 2.65 0.00 0.00 5.14
247 248 7.499895 TGAACGTAAAGATAATTAATGGGTCCC 59.500 37.037 0.00 0.00 0.00 4.46
248 249 8.340443 GTGAACGTAAAGATAATTAATGGGTCC 58.660 37.037 0.00 0.00 0.00 4.46
249 250 8.885722 TGTGAACGTAAAGATAATTAATGGGTC 58.114 33.333 0.00 0.00 0.00 4.46
250 251 8.795842 TGTGAACGTAAAGATAATTAATGGGT 57.204 30.769 0.00 0.00 0.00 4.51
251 252 9.878599 GATGTGAACGTAAAGATAATTAATGGG 57.121 33.333 0.00 0.00 0.00 4.00
257 258 9.173021 TCCAATGATGTGAACGTAAAGATAATT 57.827 29.630 0.00 0.00 0.00 1.40
258 259 8.731275 TCCAATGATGTGAACGTAAAGATAAT 57.269 30.769 0.00 0.00 0.00 1.28
259 260 8.038351 TCTCCAATGATGTGAACGTAAAGATAA 58.962 33.333 0.00 0.00 0.00 1.75
260 261 7.552459 TCTCCAATGATGTGAACGTAAAGATA 58.448 34.615 0.00 0.00 0.00 1.98
261 262 6.406370 TCTCCAATGATGTGAACGTAAAGAT 58.594 36.000 0.00 0.00 0.00 2.40
262 263 5.789521 TCTCCAATGATGTGAACGTAAAGA 58.210 37.500 0.00 0.00 0.00 2.52
263 264 6.481134 CATCTCCAATGATGTGAACGTAAAG 58.519 40.000 0.00 0.00 39.05 1.85
264 265 5.163764 GCATCTCCAATGATGTGAACGTAAA 60.164 40.000 0.00 0.00 44.02 2.01
265 266 4.332543 GCATCTCCAATGATGTGAACGTAA 59.667 41.667 0.00 0.00 44.02 3.18
266 267 3.871006 GCATCTCCAATGATGTGAACGTA 59.129 43.478 0.00 0.00 44.02 3.57
267 268 2.679837 GCATCTCCAATGATGTGAACGT 59.320 45.455 6.40 0.00 44.02 3.99
268 269 2.941064 AGCATCTCCAATGATGTGAACG 59.059 45.455 6.40 0.00 44.02 3.95
269 270 4.978083 AAGCATCTCCAATGATGTGAAC 57.022 40.909 6.40 0.00 44.02 3.18
270 271 5.988310 AAAAGCATCTCCAATGATGTGAA 57.012 34.783 6.40 0.00 44.02 3.18
271 272 6.417258 TCTAAAAGCATCTCCAATGATGTGA 58.583 36.000 6.40 0.00 44.02 3.58
272 273 6.688637 TCTAAAAGCATCTCCAATGATGTG 57.311 37.500 6.40 0.00 44.02 3.21
273 274 6.238953 GCATCTAAAAGCATCTCCAATGATGT 60.239 38.462 6.40 0.00 44.02 3.06
274 275 6.150318 GCATCTAAAAGCATCTCCAATGATG 58.850 40.000 0.00 0.00 44.72 3.07
275 276 5.243283 GGCATCTAAAAGCATCTCCAATGAT 59.757 40.000 0.00 0.00 0.00 2.45
276 277 4.581824 GGCATCTAAAAGCATCTCCAATGA 59.418 41.667 0.00 0.00 0.00 2.57
277 278 4.340097 TGGCATCTAAAAGCATCTCCAATG 59.660 41.667 0.00 0.00 0.00 2.82
278 279 4.539726 TGGCATCTAAAAGCATCTCCAAT 58.460 39.130 0.00 0.00 0.00 3.16
282 283 3.549794 ACCTGGCATCTAAAAGCATCTC 58.450 45.455 0.00 0.00 0.00 2.75
290 291 3.132289 CCGAGTAGAACCTGGCATCTAAA 59.868 47.826 10.41 0.00 30.39 1.85
301 302 5.689068 CGTGGTAAATATTCCGAGTAGAACC 59.311 44.000 0.00 0.00 0.00 3.62
302 303 6.197842 CACGTGGTAAATATTCCGAGTAGAAC 59.802 42.308 7.95 0.00 0.00 3.01
305 306 4.443394 GCACGTGGTAAATATTCCGAGTAG 59.557 45.833 18.88 0.00 0.00 2.57
337 338 0.823356 GTTTTGGGCTGCTCAGTGGA 60.823 55.000 1.00 0.00 0.00 4.02
343 344 4.550422 CTTTTAGAAGTTTTGGGCTGCTC 58.450 43.478 0.00 0.00 0.00 4.26
344 345 3.321968 CCTTTTAGAAGTTTTGGGCTGCT 59.678 43.478 0.00 0.00 0.00 4.24
345 346 3.653344 CCTTTTAGAAGTTTTGGGCTGC 58.347 45.455 0.00 0.00 0.00 5.25
348 352 2.295070 TCGCCTTTTAGAAGTTTTGGGC 59.705 45.455 0.00 0.00 35.53 5.36
356 360 2.000447 CCGAACCTCGCCTTTTAGAAG 59.000 52.381 0.00 0.00 38.82 2.85
361 365 0.949397 GAAACCGAACCTCGCCTTTT 59.051 50.000 0.00 0.00 38.82 2.27
365 369 0.037975 TAGTGAAACCGAACCTCGCC 60.038 55.000 0.00 0.00 38.82 5.54
367 371 1.334054 CGTAGTGAAACCGAACCTCG 58.666 55.000 0.00 0.00 37.80 4.63
370 374 2.064014 CTTCCGTAGTGAAACCGAACC 58.936 52.381 0.00 0.00 37.80 3.62
386 420 1.810755 CTGCGGAACCTTTTACCTTCC 59.189 52.381 0.00 0.00 0.00 3.46
387 421 2.483106 GTCTGCGGAACCTTTTACCTTC 59.517 50.000 0.00 0.00 0.00 3.46
392 426 1.614903 TCGAGTCTGCGGAACCTTTTA 59.385 47.619 0.00 0.00 0.00 1.52
393 427 0.391597 TCGAGTCTGCGGAACCTTTT 59.608 50.000 0.00 0.00 0.00 2.27
402 436 0.658829 GTCGGATGATCGAGTCTGCG 60.659 60.000 0.00 0.00 40.01 5.18
406 440 1.866063 GCCTTGTCGGATGATCGAGTC 60.866 57.143 0.00 0.00 40.01 3.36
483 518 2.387125 GAAGCAGAAACAACGGCGCA 62.387 55.000 10.83 0.00 36.22 6.09
517 552 6.309980 CGGAGCTATCTTATGCTTAGTGATTG 59.690 42.308 0.00 0.00 39.91 2.67
518 553 6.209589 TCGGAGCTATCTTATGCTTAGTGATT 59.790 38.462 0.00 0.00 39.91 2.57
519 554 5.712446 TCGGAGCTATCTTATGCTTAGTGAT 59.288 40.000 0.00 0.00 39.91 3.06
520 555 5.070685 TCGGAGCTATCTTATGCTTAGTGA 58.929 41.667 0.00 0.00 39.91 3.41
521 556 5.378292 TCGGAGCTATCTTATGCTTAGTG 57.622 43.478 0.00 0.00 39.91 2.74
522 557 6.597832 ATTCGGAGCTATCTTATGCTTAGT 57.402 37.500 0.00 0.00 39.91 2.24
523 558 7.539436 TGTATTCGGAGCTATCTTATGCTTAG 58.461 38.462 0.00 0.00 39.91 2.18
524 559 7.462571 TGTATTCGGAGCTATCTTATGCTTA 57.537 36.000 0.00 0.00 39.91 3.09
525 560 6.346477 TGTATTCGGAGCTATCTTATGCTT 57.654 37.500 0.00 0.00 39.91 3.91
526 561 5.984695 TGTATTCGGAGCTATCTTATGCT 57.015 39.130 0.00 0.00 42.82 3.79
527 562 6.813649 TGATTGTATTCGGAGCTATCTTATGC 59.186 38.462 0.00 0.00 0.00 3.14
528 563 8.031864 AGTGATTGTATTCGGAGCTATCTTATG 58.968 37.037 0.00 0.00 0.00 1.90
529 564 8.031864 CAGTGATTGTATTCGGAGCTATCTTAT 58.968 37.037 0.00 0.00 0.00 1.73
530 565 7.371159 CAGTGATTGTATTCGGAGCTATCTTA 58.629 38.462 0.00 0.00 0.00 2.10
531 566 6.219473 CAGTGATTGTATTCGGAGCTATCTT 58.781 40.000 0.00 0.00 0.00 2.40
532 567 5.777802 CAGTGATTGTATTCGGAGCTATCT 58.222 41.667 0.00 0.00 0.00 1.98
533 568 4.387256 GCAGTGATTGTATTCGGAGCTATC 59.613 45.833 0.00 0.00 0.00 2.08
534 569 4.310769 GCAGTGATTGTATTCGGAGCTAT 58.689 43.478 0.00 0.00 0.00 2.97
535 570 3.717707 GCAGTGATTGTATTCGGAGCTA 58.282 45.455 0.00 0.00 0.00 3.32
536 571 2.555199 GCAGTGATTGTATTCGGAGCT 58.445 47.619 0.00 0.00 0.00 4.09
537 572 1.258982 CGCAGTGATTGTATTCGGAGC 59.741 52.381 0.00 0.00 0.00 4.70
538 573 1.258982 GCGCAGTGATTGTATTCGGAG 59.741 52.381 0.30 0.00 0.00 4.63
539 574 1.286501 GCGCAGTGATTGTATTCGGA 58.713 50.000 0.30 0.00 0.00 4.55
540 575 1.006086 TGCGCAGTGATTGTATTCGG 58.994 50.000 5.66 0.00 0.00 4.30
541 576 4.451379 TTATGCGCAGTGATTGTATTCG 57.549 40.909 18.32 0.00 0.00 3.34
565 600 5.294734 AGTGCCCATGAAGTTTCATTTTT 57.705 34.783 4.66 0.00 45.13 1.94
566 601 4.961438 AGTGCCCATGAAGTTTCATTTT 57.039 36.364 4.66 0.00 45.13 1.82
567 602 4.082026 GCTAGTGCCCATGAAGTTTCATTT 60.082 41.667 4.66 0.00 45.13 2.32
568 603 3.445096 GCTAGTGCCCATGAAGTTTCATT 59.555 43.478 4.66 0.00 45.13 2.57
569 604 3.561960 TGCTAGTGCCCATGAAGTTTCAT 60.562 43.478 1.58 1.58 42.66 2.57
570 605 2.224744 TGCTAGTGCCCATGAAGTTTCA 60.225 45.455 0.00 0.00 38.98 2.69
571 606 2.162408 GTGCTAGTGCCCATGAAGTTTC 59.838 50.000 0.00 0.00 38.71 2.78
572 607 2.162681 GTGCTAGTGCCCATGAAGTTT 58.837 47.619 0.00 0.00 38.71 2.66
573 608 1.614317 GGTGCTAGTGCCCATGAAGTT 60.614 52.381 0.00 0.00 38.71 2.66
574 609 0.035056 GGTGCTAGTGCCCATGAAGT 60.035 55.000 0.00 0.00 38.71 3.01
575 610 0.749454 GGGTGCTAGTGCCCATGAAG 60.749 60.000 15.91 0.00 44.23 3.02
576 611 1.302949 GGGTGCTAGTGCCCATGAA 59.697 57.895 15.91 0.00 44.23 2.57
577 612 2.998097 GGGTGCTAGTGCCCATGA 59.002 61.111 15.91 0.00 44.23 3.07
581 616 4.778143 CCGTGGGTGCTAGTGCCC 62.778 72.222 14.48 14.48 45.04 5.36
582 617 3.546714 AACCGTGGGTGCTAGTGCC 62.547 63.158 0.00 0.00 35.34 5.01
583 618 1.170290 AAAACCGTGGGTGCTAGTGC 61.170 55.000 0.00 0.00 35.34 4.40
584 619 0.872388 GAAAACCGTGGGTGCTAGTG 59.128 55.000 0.00 0.00 35.34 2.74
585 620 0.763035 AGAAAACCGTGGGTGCTAGT 59.237 50.000 0.00 0.00 35.34 2.57
586 621 1.535462 CAAGAAAACCGTGGGTGCTAG 59.465 52.381 0.00 0.00 35.34 3.42
587 622 1.141254 TCAAGAAAACCGTGGGTGCTA 59.859 47.619 0.00 0.00 35.34 3.49
588 623 0.106918 TCAAGAAAACCGTGGGTGCT 60.107 50.000 0.00 0.00 35.34 4.40
589 624 0.958822 ATCAAGAAAACCGTGGGTGC 59.041 50.000 0.00 0.00 35.34 5.01
590 625 5.424757 TCTATATCAAGAAAACCGTGGGTG 58.575 41.667 0.00 0.00 35.34 4.61
591 626 5.687166 TCTATATCAAGAAAACCGTGGGT 57.313 39.130 0.00 0.00 37.65 4.51
592 627 6.346096 TCTTCTATATCAAGAAAACCGTGGG 58.654 40.000 0.00 0.00 35.14 4.61
593 628 7.466050 GCTTCTTCTATATCAAGAAAACCGTGG 60.466 40.741 9.82 0.00 38.98 4.94
594 629 7.064609 TGCTTCTTCTATATCAAGAAAACCGTG 59.935 37.037 9.82 1.71 38.98 4.94
595 630 7.103641 TGCTTCTTCTATATCAAGAAAACCGT 58.896 34.615 9.82 0.00 38.98 4.83
596 631 7.539712 TGCTTCTTCTATATCAAGAAAACCG 57.460 36.000 9.82 2.47 38.98 4.44
597 632 8.563732 GGATGCTTCTTCTATATCAAGAAAACC 58.436 37.037 9.82 7.73 38.98 3.27
598 633 8.563732 GGGATGCTTCTTCTATATCAAGAAAAC 58.436 37.037 9.82 6.87 38.98 2.43
599 634 8.497745 AGGGATGCTTCTTCTATATCAAGAAAA 58.502 33.333 9.82 4.15 38.98 2.29
600 635 8.038862 AGGGATGCTTCTTCTATATCAAGAAA 57.961 34.615 9.82 0.14 38.98 2.52
601 636 7.290948 TGAGGGATGCTTCTTCTATATCAAGAA 59.709 37.037 8.70 8.70 37.50 2.52
602 637 6.784473 TGAGGGATGCTTCTTCTATATCAAGA 59.216 38.462 0.00 0.00 0.00 3.02
603 638 7.002250 TGAGGGATGCTTCTTCTATATCAAG 57.998 40.000 0.00 0.00 0.00 3.02
604 639 7.236225 TCATGAGGGATGCTTCTTCTATATCAA 59.764 37.037 0.00 0.00 31.32 2.57
605 640 6.727697 TCATGAGGGATGCTTCTTCTATATCA 59.272 38.462 0.00 0.00 31.32 2.15
606 641 7.123997 TCTCATGAGGGATGCTTCTTCTATATC 59.876 40.741 22.42 0.00 31.32 1.63
607 642 6.958778 TCTCATGAGGGATGCTTCTTCTATAT 59.041 38.462 22.42 0.00 31.32 0.86
608 643 6.318112 TCTCATGAGGGATGCTTCTTCTATA 58.682 40.000 22.42 0.00 31.32 1.31
609 644 5.153675 TCTCATGAGGGATGCTTCTTCTAT 58.846 41.667 22.42 0.00 31.32 1.98
610 645 4.550669 TCTCATGAGGGATGCTTCTTCTA 58.449 43.478 22.42 0.00 31.32 2.10
611 646 3.382278 TCTCATGAGGGATGCTTCTTCT 58.618 45.455 22.42 0.00 31.32 2.85
612 647 3.834489 TCTCATGAGGGATGCTTCTTC 57.166 47.619 22.42 0.00 31.32 2.87
613 648 4.792513 ATTCTCATGAGGGATGCTTCTT 57.207 40.909 22.42 0.00 31.32 2.52
614 649 4.792513 AATTCTCATGAGGGATGCTTCT 57.207 40.909 22.42 0.05 31.32 2.85
615 650 4.885907 TGAAATTCTCATGAGGGATGCTTC 59.114 41.667 22.42 16.16 31.32 3.86
616 651 4.863548 TGAAATTCTCATGAGGGATGCTT 58.136 39.130 22.42 9.14 31.32 3.91
617 652 4.165565 TCTGAAATTCTCATGAGGGATGCT 59.834 41.667 22.42 8.29 32.14 3.79
618 653 4.458397 TCTGAAATTCTCATGAGGGATGC 58.542 43.478 22.42 10.22 32.14 3.91
619 654 7.584122 ATTTCTGAAATTCTCATGAGGGATG 57.416 36.000 22.42 7.14 32.14 3.51
646 681 2.703798 TTCGATCCACGTCGGGGAC 61.704 63.158 20.83 11.97 41.74 4.46
647 682 2.361483 TTCGATCCACGTCGGGGA 60.361 61.111 20.66 20.66 41.74 4.81
648 683 2.202703 GTTCGATCCACGTCGGGG 60.203 66.667 7.38 7.38 41.74 5.73
649 684 1.226603 GAGTTCGATCCACGTCGGG 60.227 63.158 0.00 0.00 41.74 5.14
650 685 0.523546 CAGAGTTCGATCCACGTCGG 60.524 60.000 0.00 0.00 41.74 4.79
651 686 0.523546 CCAGAGTTCGATCCACGTCG 60.524 60.000 0.00 0.00 43.13 5.12
652 687 0.526662 ACCAGAGTTCGATCCACGTC 59.473 55.000 0.00 0.00 43.13 4.34
653 688 1.743958 CTACCAGAGTTCGATCCACGT 59.256 52.381 0.00 0.00 43.13 4.49
654 689 1.743958 ACTACCAGAGTTCGATCCACG 59.256 52.381 0.00 0.00 44.09 4.94
655 690 3.870633 AACTACCAGAGTTCGATCCAC 57.129 47.619 0.00 0.00 45.81 4.02
656 691 3.952323 CCTAACTACCAGAGTTCGATCCA 59.048 47.826 0.00 0.00 45.81 3.41
657 692 3.952967 ACCTAACTACCAGAGTTCGATCC 59.047 47.826 0.00 0.00 45.81 3.36
658 693 5.579564 AACCTAACTACCAGAGTTCGATC 57.420 43.478 0.00 0.00 45.81 3.69
659 694 5.997384 AAACCTAACTACCAGAGTTCGAT 57.003 39.130 0.00 0.00 45.81 3.59
660 695 5.769662 TGTAAACCTAACTACCAGAGTTCGA 59.230 40.000 0.00 0.00 45.81 3.71
661 696 6.017400 TGTAAACCTAACTACCAGAGTTCG 57.983 41.667 0.00 0.00 45.81 3.95
662 697 8.092687 TGATTGTAAACCTAACTACCAGAGTTC 58.907 37.037 0.00 0.00 45.81 3.01
664 699 7.549147 TGATTGTAAACCTAACTACCAGAGT 57.451 36.000 0.00 0.00 41.56 3.24
665 700 7.011482 GCATGATTGTAAACCTAACTACCAGAG 59.989 40.741 0.00 0.00 0.00 3.35
666 701 6.821665 GCATGATTGTAAACCTAACTACCAGA 59.178 38.462 0.00 0.00 0.00 3.86
667 702 6.238103 CGCATGATTGTAAACCTAACTACCAG 60.238 42.308 0.00 0.00 0.00 4.00
668 703 5.583061 CGCATGATTGTAAACCTAACTACCA 59.417 40.000 0.00 0.00 0.00 3.25
669 704 5.503520 GCGCATGATTGTAAACCTAACTACC 60.504 44.000 0.30 0.00 0.00 3.18
670 705 5.499047 GCGCATGATTGTAAACCTAACTAC 58.501 41.667 0.30 0.00 0.00 2.73
671 706 4.573201 GGCGCATGATTGTAAACCTAACTA 59.427 41.667 10.83 0.00 0.00 2.24
672 707 3.377172 GGCGCATGATTGTAAACCTAACT 59.623 43.478 10.83 0.00 0.00 2.24
673 708 3.488553 GGGCGCATGATTGTAAACCTAAC 60.489 47.826 10.83 0.00 0.00 2.34
674 709 2.685897 GGGCGCATGATTGTAAACCTAA 59.314 45.455 10.83 0.00 0.00 2.69
675 710 2.294074 GGGCGCATGATTGTAAACCTA 58.706 47.619 10.83 0.00 0.00 3.08
676 711 1.102978 GGGCGCATGATTGTAAACCT 58.897 50.000 10.83 0.00 0.00 3.50
677 712 0.102300 GGGGCGCATGATTGTAAACC 59.898 55.000 10.83 0.00 0.00 3.27
678 713 0.102300 GGGGGCGCATGATTGTAAAC 59.898 55.000 10.83 0.00 0.00 2.01
679 714 0.323816 TGGGGGCGCATGATTGTAAA 60.324 50.000 10.83 0.00 0.00 2.01
680 715 0.323816 TTGGGGGCGCATGATTGTAA 60.324 50.000 10.83 0.00 0.00 2.41
681 716 1.034838 GTTGGGGGCGCATGATTGTA 61.035 55.000 10.83 0.00 0.00 2.41
682 717 2.037049 TTGGGGGCGCATGATTGT 59.963 55.556 10.83 0.00 0.00 2.71
683 718 2.495866 GTTGGGGGCGCATGATTG 59.504 61.111 10.83 0.00 0.00 2.67
684 719 2.759560 GGTTGGGGGCGCATGATT 60.760 61.111 10.83 0.00 0.00 2.57
685 720 4.059304 TGGTTGGGGGCGCATGAT 62.059 61.111 10.83 0.00 0.00 2.45
696 731 1.754234 GGCATAGCCCAGTGGTTGG 60.754 63.158 8.74 0.00 44.06 3.77
697 732 3.924507 GGCATAGCCCAGTGGTTG 58.075 61.111 8.74 1.51 44.06 3.77
707 742 0.179045 ATTGAGGACGTGGGCATAGC 60.179 55.000 0.00 0.00 0.00 2.97
708 743 1.138859 TGATTGAGGACGTGGGCATAG 59.861 52.381 0.00 0.00 0.00 2.23
709 744 1.134521 GTGATTGAGGACGTGGGCATA 60.135 52.381 0.00 0.00 0.00 3.14
710 745 0.392998 GTGATTGAGGACGTGGGCAT 60.393 55.000 0.00 0.00 0.00 4.40
711 746 1.003839 GTGATTGAGGACGTGGGCA 60.004 57.895 0.00 0.00 0.00 5.36
712 747 1.021390 CAGTGATTGAGGACGTGGGC 61.021 60.000 0.00 0.00 0.00 5.36
713 748 1.021390 GCAGTGATTGAGGACGTGGG 61.021 60.000 0.00 0.00 0.00 4.61
714 749 1.354337 CGCAGTGATTGAGGACGTGG 61.354 60.000 0.00 0.00 0.00 4.94
715 750 1.959899 GCGCAGTGATTGAGGACGTG 61.960 60.000 0.30 0.00 0.00 4.49
716 751 1.738099 GCGCAGTGATTGAGGACGT 60.738 57.895 0.30 0.00 0.00 4.34
717 752 1.086067 ATGCGCAGTGATTGAGGACG 61.086 55.000 18.32 0.00 28.32 4.79
718 753 1.939974 TATGCGCAGTGATTGAGGAC 58.060 50.000 18.32 0.00 28.32 3.85
719 754 2.168313 TCTTATGCGCAGTGATTGAGGA 59.832 45.455 18.32 0.82 0.00 3.71
720 755 2.554142 TCTTATGCGCAGTGATTGAGG 58.446 47.619 18.32 0.00 0.00 3.86
721 756 4.143158 GCTATCTTATGCGCAGTGATTGAG 60.143 45.833 18.32 14.05 0.00 3.02
722 757 3.742882 GCTATCTTATGCGCAGTGATTGA 59.257 43.478 18.32 8.43 0.00 2.57
723 758 3.422732 CGCTATCTTATGCGCAGTGATTG 60.423 47.826 18.32 18.73 45.50 2.67
760 795 1.378514 GATTCAAAGGGGCTCGCCA 60.379 57.895 10.51 0.00 37.98 5.69
761 796 0.681243 AAGATTCAAAGGGGCTCGCC 60.681 55.000 0.00 0.00 0.00 5.54
762 797 1.133216 GAAAGATTCAAAGGGGCTCGC 59.867 52.381 0.00 0.00 0.00 5.03
763 798 2.716217 AGAAAGATTCAAAGGGGCTCG 58.284 47.619 0.00 0.00 0.00 5.03
764 799 4.081972 GGAAAGAAAGATTCAAAGGGGCTC 60.082 45.833 0.00 0.00 0.00 4.70
765 800 3.834813 GGAAAGAAAGATTCAAAGGGGCT 59.165 43.478 0.00 0.00 0.00 5.19
766 801 3.055819 GGGAAAGAAAGATTCAAAGGGGC 60.056 47.826 0.00 0.00 0.00 5.80
931 974 0.253327 GAGAGCGAAAGGAATGGGGT 59.747 55.000 0.00 0.00 0.00 4.95
938 981 0.898789 AGGAACCGAGAGCGAAAGGA 60.899 55.000 0.00 0.00 40.82 3.36
981 1024 2.217510 TCGCTACAGTTTCCTCCTCT 57.782 50.000 0.00 0.00 0.00 3.69
999 1057 0.895100 TGGTGAAGCAGTTGCCCATC 60.895 55.000 0.00 0.87 43.38 3.51
1039 1097 3.730761 CTCGAACGACCCCGACGT 61.731 66.667 0.00 0.00 45.89 4.34
1508 1572 2.048222 CCATGACGAGGTGCACGT 60.048 61.111 12.68 12.68 46.58 4.49
1807 1877 3.809279 TGTTGCATTGAGACTGTACTGTG 59.191 43.478 10.43 0.00 0.00 3.66
1878 1955 4.111577 TGAATTATCCCCTCCTCTGTTGT 58.888 43.478 0.00 0.00 0.00 3.32
1917 1994 8.579006 TCTTCTATGCAATGTTGAACTGAATTT 58.421 29.630 0.00 0.00 0.00 1.82
1918 1995 8.114331 TCTTCTATGCAATGTTGAACTGAATT 57.886 30.769 0.00 0.00 0.00 2.17
1919 1996 7.692460 TCTTCTATGCAATGTTGAACTGAAT 57.308 32.000 0.00 0.00 0.00 2.57
1920 1997 7.692460 ATCTTCTATGCAATGTTGAACTGAA 57.308 32.000 0.00 0.00 0.00 3.02
1921 1998 7.823799 TGTATCTTCTATGCAATGTTGAACTGA 59.176 33.333 0.00 0.00 0.00 3.41
1922 1999 7.977904 TGTATCTTCTATGCAATGTTGAACTG 58.022 34.615 0.00 0.00 0.00 3.16
1923 2000 8.565896 TTGTATCTTCTATGCAATGTTGAACT 57.434 30.769 0.00 0.00 0.00 3.01
1924 2001 9.793252 ATTTGTATCTTCTATGCAATGTTGAAC 57.207 29.630 0.00 0.00 0.00 3.18
2035 2115 3.390967 TCTCTCCCATAATTCCGATGCAA 59.609 43.478 0.00 0.00 0.00 4.08
2091 2171 3.713288 CGGCGAACCACATAAGAGAATA 58.287 45.455 0.00 0.00 34.57 1.75
2103 2183 2.668212 CAGAAAGGCGGCGAACCA 60.668 61.111 12.98 0.00 34.57 3.67
2201 2281 1.270839 CCCTTCTCGGTTTCTGCTCAA 60.271 52.381 0.00 0.00 0.00 3.02
2213 2294 1.261619 GCGTCAAATATGCCCTTCTCG 59.738 52.381 0.00 0.00 33.68 4.04
2350 2431 3.628257 GGTGTACTTACCTAGGGCCTGTA 60.628 52.174 18.53 8.09 37.74 2.74
2415 2501 9.290483 CAGATTTATCGCAACGATGTACTATAT 57.710 33.333 12.45 0.00 46.43 0.86
2488 2578 1.816537 GCTGTCGATAGGCCTGTCA 59.183 57.895 26.94 12.87 42.82 3.58
2560 2650 4.423625 AGGATAATTCACCTTAAGCGCT 57.576 40.909 2.64 2.64 31.95 5.92
2577 2667 7.251321 AGTAGAAGTCATCTTTGTCAAGGAT 57.749 36.000 4.42 4.42 39.71 3.24
2596 2686 9.417561 AGCTTAGTTATACCAACACATAGTAGA 57.582 33.333 0.00 0.00 0.00 2.59
2606 2696 4.032558 GCGTGTCAGCTTAGTTATACCAAC 59.967 45.833 0.00 0.00 0.00 3.77
2790 2880 1.074752 GCTTCTGAACCTCTGCTTCG 58.925 55.000 0.00 0.00 0.00 3.79
2793 2883 3.370315 CCATAAGCTTCTGAACCTCTGCT 60.370 47.826 13.08 0.00 0.00 4.24
2826 2916 6.396829 AGGGTGAAACAAAAGAGAAATGAG 57.603 37.500 0.00 0.00 39.98 2.90
2833 2923 3.699038 TGGTGAAGGGTGAAACAAAAGAG 59.301 43.478 0.00 0.00 39.98 2.85
2870 2960 7.034685 TCATAGCATGGTCAATGAAATCTTG 57.965 36.000 0.00 0.00 38.72 3.02
2929 3019 4.199432 AGCAGTCAGGAATTCTGTGTAG 57.801 45.455 5.23 0.75 43.76 2.74
3091 3181 8.331730 AGTTTAGCGTTGGTTAATTGTATCTT 57.668 30.769 0.00 0.00 0.00 2.40
3092 3182 7.916914 AGTTTAGCGTTGGTTAATTGTATCT 57.083 32.000 0.00 0.00 0.00 1.98
3305 3443 1.800805 ACTCTGTCATGGCTTGTTCG 58.199 50.000 0.00 0.00 0.00 3.95
3399 3537 4.893424 TCGTTTTGAAAGAAAGGTGAGG 57.107 40.909 0.00 0.00 0.00 3.86
3414 3552 6.270064 CACTAAAGTGGGACAAAATCGTTTT 58.730 36.000 2.01 0.00 44.16 2.43
3467 3605 5.835113 ATTCCCATCCTGTGAATTTAACG 57.165 39.130 0.00 0.00 0.00 3.18
3525 3663 6.241645 CAAGTTTCCTCAGGTCTATTTTCCT 58.758 40.000 0.00 0.00 33.96 3.36
3672 3814 8.602472 AAAAGAAGTATTTTGGGTATATGGCA 57.398 30.769 0.00 0.00 31.30 4.92
3685 3827 7.923414 AGCATACGAAGGAAAAGAAGTATTT 57.077 32.000 0.00 0.00 0.00 1.40
3773 3920 5.540400 TGGTATTAGGTCCGGATTAACAG 57.460 43.478 7.81 0.00 0.00 3.16
3774 3921 5.954153 TTGGTATTAGGTCCGGATTAACA 57.046 39.130 7.81 1.10 0.00 2.41
3775 3922 6.114767 TGTTTGGTATTAGGTCCGGATTAAC 58.885 40.000 7.81 0.00 0.00 2.01
3776 3923 6.156602 TCTGTTTGGTATTAGGTCCGGATTAA 59.843 38.462 7.81 10.66 0.00 1.40
3777 3924 5.662208 TCTGTTTGGTATTAGGTCCGGATTA 59.338 40.000 7.81 0.11 0.00 1.75
3778 3925 4.472108 TCTGTTTGGTATTAGGTCCGGATT 59.528 41.667 7.81 1.29 0.00 3.01
3779 3926 4.035112 TCTGTTTGGTATTAGGTCCGGAT 58.965 43.478 7.81 0.00 0.00 4.18
3780 3927 3.196254 GTCTGTTTGGTATTAGGTCCGGA 59.804 47.826 0.00 0.00 0.00 5.14
3781 3928 3.528532 GTCTGTTTGGTATTAGGTCCGG 58.471 50.000 0.00 0.00 0.00 5.14
3782 3929 3.197116 AGGTCTGTTTGGTATTAGGTCCG 59.803 47.826 0.00 0.00 0.00 4.79
3783 3930 4.679905 CGAGGTCTGTTTGGTATTAGGTCC 60.680 50.000 0.00 0.00 0.00 4.46
3784 3931 4.430908 CGAGGTCTGTTTGGTATTAGGTC 58.569 47.826 0.00 0.00 0.00 3.85
3785 3932 3.369157 GCGAGGTCTGTTTGGTATTAGGT 60.369 47.826 0.00 0.00 0.00 3.08
3800 3947 2.521958 TTAGGCTTGGCTGCGAGGTC 62.522 60.000 6.97 0.00 0.00 3.85
3827 3974 2.936032 GGTTGGGGCCTCAGGTCT 60.936 66.667 4.89 0.00 0.00 3.85
3828 3975 2.771328 CTTGGTTGGGGCCTCAGGTC 62.771 65.000 4.89 0.06 0.00 3.85
3829 3976 2.780924 TTGGTTGGGGCCTCAGGT 60.781 61.111 4.89 0.00 0.00 4.00
3830 3977 2.036256 CTTGGTTGGGGCCTCAGG 59.964 66.667 4.89 0.00 0.00 3.86
3831 3978 2.677875 GCTTGGTTGGGGCCTCAG 60.678 66.667 4.89 0.00 0.00 3.35
3855 4002 4.418328 TGTGTGCCCCATACCCGC 62.418 66.667 0.00 0.00 0.00 6.13
3932 4079 0.396435 AGGTTGATGCGTCAGTCCAA 59.604 50.000 24.31 4.47 35.39 3.53
3935 4082 0.166814 GCAAGGTTGATGCGTCAGTC 59.833 55.000 8.93 6.67 35.39 3.51
3958 4105 1.514443 GCGTCGACCACAGCTAGAC 60.514 63.158 10.58 0.00 0.00 2.59
3959 4106 2.697761 GGCGTCGACCACAGCTAGA 61.698 63.158 10.58 0.00 0.00 2.43
3976 4123 3.800685 TTGTCTGGCGTCGTGGTGG 62.801 63.158 0.00 0.00 0.00 4.61
3998 4145 1.141019 GGACGAGCGCAGAATGGTA 59.859 57.895 11.47 0.00 35.86 3.25
4004 4151 1.446099 GTTGATGGACGAGCGCAGA 60.446 57.895 11.47 0.00 0.00 4.26
4071 4218 1.911293 GCATGTGACACGTCGGCAAT 61.911 55.000 0.00 0.00 0.00 3.56
4075 4222 1.204062 GTTGCATGTGACACGTCGG 59.796 57.895 0.00 0.00 0.00 4.79
4086 4233 2.401766 GGAGGAGTGGCGTTGCATG 61.402 63.158 0.00 0.00 0.00 4.06
4097 4244 1.289380 GTGTTCGCGAAGGAGGAGT 59.711 57.895 24.13 0.00 0.00 3.85
4130 4277 1.619669 GGTGGAAGGGGATGGGACT 60.620 63.158 0.00 0.00 0.00 3.85
4133 4280 3.010144 CAGGTGGAAGGGGATGGG 58.990 66.667 0.00 0.00 0.00 4.00
4185 4332 1.725803 ATCTACCCACCCCGATTACC 58.274 55.000 0.00 0.00 0.00 2.85
4186 4333 2.224450 CCAATCTACCCACCCCGATTAC 60.224 54.545 0.00 0.00 0.00 1.89
4187 4334 2.051692 CCAATCTACCCACCCCGATTA 58.948 52.381 0.00 0.00 0.00 1.75
4188 4335 0.843984 CCAATCTACCCACCCCGATT 59.156 55.000 0.00 0.00 0.00 3.34
4227 4459 3.508840 GGGCGCCACTTTCCATCG 61.509 66.667 30.85 0.00 0.00 3.84
4230 4462 2.676121 CATGGGCGCCACTTTCCA 60.676 61.111 30.85 16.51 35.80 3.53
4307 4539 0.543277 GTGATGGTGAGCCCTGATGA 59.457 55.000 0.00 0.00 0.00 2.92
4310 4542 2.659063 CGGTGATGGTGAGCCCTGA 61.659 63.158 0.00 0.00 0.00 3.86
4343 4575 3.216944 CTCGTCGTCCCGGTGGTTT 62.217 63.158 0.00 0.00 0.00 3.27
4361 4593 1.760029 CCCTTTCTCCTACTGCCTCTC 59.240 57.143 0.00 0.00 0.00 3.20
4370 4602 1.439543 TGGAGGTTCCCCTTTCTCCTA 59.560 52.381 9.27 0.00 42.86 2.94
4418 4650 4.760047 CTTGGTGGAGTCCGGCCG 62.760 72.222 21.04 21.04 0.00 6.13
4471 4704 2.202349 GCGACATTTGCAGGCGAC 60.202 61.111 3.52 0.00 0.00 5.19
4479 4712 2.480555 GACGGCTGGCGACATTTG 59.519 61.111 30.58 0.00 41.51 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.