Multiple sequence alignment - TraesCS2B01G424800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G424800 chr2B 100.000 3358 0 0 1 3358 610918301 610914944 0.000000e+00 6202.0
1 TraesCS2B01G424800 chr2D 92.593 2214 111 32 466 2652 518609322 518607135 0.000000e+00 3131.0
2 TraesCS2B01G424800 chr2D 93.050 259 14 2 3103 3358 518607133 518606876 3.160000e-100 375.0
3 TraesCS2B01G424800 chr2D 82.609 92 15 1 5 96 518258256 518258346 2.780000e-11 80.5
4 TraesCS2B01G424800 chr2D 78.947 114 22 1 20 133 619699624 619699735 3.590000e-10 76.8
5 TraesCS2B01G424800 chr2A 90.851 1410 83 25 1369 2751 662893705 662892315 0.000000e+00 1847.0
6 TraesCS2B01G424800 chr2A 90.249 882 53 16 468 1324 662894589 662893716 0.000000e+00 1122.0
7 TraesCS2B01G424800 chr2A 93.830 389 19 2 2974 3358 662892175 662891788 6.250000e-162 580.0
8 TraesCS2B01G424800 chr2A 80.672 119 15 7 28 142 161275481 161275595 5.970000e-13 86.1
9 TraesCS2B01G424800 chr1B 86.310 336 20 14 2789 3122 45205628 45205939 3.210000e-90 342.0
10 TraesCS2B01G424800 chr6D 80.412 291 36 17 2 284 322986872 322986595 5.680000e-48 202.0
11 TraesCS2B01G424800 chr4A 78.475 223 35 10 21 236 691117037 691116821 2.100000e-27 134.0
12 TraesCS2B01G424800 chr7A 80.916 131 21 3 5 135 183904306 183904432 2.130000e-17 100.0
13 TraesCS2B01G424800 chr6B 84.615 91 8 4 5 95 705329927 705330011 5.970000e-13 86.1
14 TraesCS2B01G424800 chr3A 80.531 113 20 2 28 140 107035674 107035784 5.970000e-13 86.1
15 TraesCS2B01G424800 chr5D 82.979 94 14 2 3 95 65856653 65856745 2.150000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G424800 chr2B 610914944 610918301 3357 True 6202 6202 100.000000 1 3358 1 chr2B.!!$R1 3357
1 TraesCS2B01G424800 chr2D 518606876 518609322 2446 True 1753 3131 92.821500 466 3358 2 chr2D.!!$R1 2892
2 TraesCS2B01G424800 chr2A 662891788 662894589 2801 True 1183 1847 91.643333 468 3358 3 chr2A.!!$R1 2890

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
429 430 0.321671 AGAAGCGAGGTTTAGCTGCA 59.678 50.0 1.02 0.0 43.78 4.41 F
450 451 0.409484 CCCCACCAAACTCCCATTCT 59.591 55.0 0.00 0.0 0.00 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2352 2430 0.180406 AGCAACACGGTCTTCCACTT 59.820 50.000 0.0 0.0 0.0 3.16 R
2405 2484 1.399440 CCAATCAGCAATCACCAGACG 59.601 52.381 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 6.895607 ACTTGTTTACCATTTTTCCAAACG 57.104 33.333 0.00 0.00 32.95 3.60
102 103 6.631962 ACTTGTTTACCATTTTTCCAAACGA 58.368 32.000 0.00 0.00 32.95 3.85
103 104 7.269316 ACTTGTTTACCATTTTTCCAAACGAT 58.731 30.769 0.00 0.00 32.95 3.73
104 105 7.766738 ACTTGTTTACCATTTTTCCAAACGATT 59.233 29.630 0.00 0.00 32.95 3.34
105 106 7.470289 TGTTTACCATTTTTCCAAACGATTG 57.530 32.000 0.00 0.00 32.95 2.67
106 107 7.265673 TGTTTACCATTTTTCCAAACGATTGA 58.734 30.769 7.03 0.00 38.94 2.57
107 108 7.928706 TGTTTACCATTTTTCCAAACGATTGAT 59.071 29.630 7.03 0.00 38.94 2.57
108 109 8.769891 GTTTACCATTTTTCCAAACGATTGATT 58.230 29.630 7.03 0.00 38.94 2.57
109 110 6.783892 ACCATTTTTCCAAACGATTGATTG 57.216 33.333 7.03 0.00 38.94 2.67
110 111 6.520272 ACCATTTTTCCAAACGATTGATTGA 58.480 32.000 7.03 0.00 38.94 2.57
111 112 6.989169 ACCATTTTTCCAAACGATTGATTGAA 59.011 30.769 7.03 0.00 38.94 2.69
112 113 7.042119 ACCATTTTTCCAAACGATTGATTGAAC 60.042 33.333 7.03 0.00 38.94 3.18
113 114 7.171337 CCATTTTTCCAAACGATTGATTGAACT 59.829 33.333 7.03 0.00 38.94 3.01
114 115 8.550376 CATTTTTCCAAACGATTGATTGAACTT 58.450 29.630 7.03 0.00 38.94 2.66
115 116 8.485976 TTTTTCCAAACGATTGATTGAACTTT 57.514 26.923 7.03 0.00 38.94 2.66
116 117 8.485976 TTTTCCAAACGATTGATTGAACTTTT 57.514 26.923 7.03 0.00 38.94 2.27
117 118 8.485976 TTTCCAAACGATTGATTGAACTTTTT 57.514 26.923 7.03 0.00 38.94 1.94
342 343 8.973835 AGAAAGAACAAAAACATAAAACGTGA 57.026 26.923 0.00 0.00 0.00 4.35
343 344 9.413048 AGAAAGAACAAAAACATAAAACGTGAA 57.587 25.926 0.00 0.00 0.00 3.18
378 379 3.571119 CGAAGCTGTGGCCTCTTG 58.429 61.111 3.32 0.00 39.73 3.02
379 380 2.684843 CGAAGCTGTGGCCTCTTGC 61.685 63.158 3.32 9.70 39.73 4.01
380 381 2.670934 AAGCTGTGGCCTCTTGCG 60.671 61.111 3.32 0.00 42.61 4.85
404 405 2.202892 GGCCGACCCATCTCGTTC 60.203 66.667 0.00 0.00 31.35 3.95
405 406 2.722201 GGCCGACCCATCTCGTTCT 61.722 63.158 0.00 0.00 31.35 3.01
406 407 1.227002 GCCGACCCATCTCGTTCTC 60.227 63.158 0.00 0.00 31.35 2.87
407 408 1.064296 CCGACCCATCTCGTTCTCG 59.936 63.158 0.00 0.00 38.55 4.04
408 409 1.586564 CGACCCATCTCGTTCTCGC 60.587 63.158 0.00 0.00 36.96 5.03
409 410 1.810532 GACCCATCTCGTTCTCGCT 59.189 57.895 0.00 0.00 36.96 4.93
410 411 1.022735 GACCCATCTCGTTCTCGCTA 58.977 55.000 0.00 0.00 36.96 4.26
411 412 1.002251 GACCCATCTCGTTCTCGCTAG 60.002 57.143 0.00 0.00 36.96 3.42
412 413 1.309950 CCCATCTCGTTCTCGCTAGA 58.690 55.000 0.00 0.00 36.96 2.43
413 414 1.676529 CCCATCTCGTTCTCGCTAGAA 59.323 52.381 0.00 0.00 39.47 2.10
414 415 2.287308 CCCATCTCGTTCTCGCTAGAAG 60.287 54.545 0.04 0.00 42.40 2.85
415 416 2.380660 CATCTCGTTCTCGCTAGAAGC 58.619 52.381 0.04 0.00 42.40 3.86
426 427 2.588027 GCTAGAAGCGAGGTTTAGCT 57.412 50.000 15.21 0.00 46.97 3.32
427 428 2.197577 GCTAGAAGCGAGGTTTAGCTG 58.802 52.381 0.00 0.00 43.78 4.24
428 429 2.197577 CTAGAAGCGAGGTTTAGCTGC 58.802 52.381 0.00 0.00 43.78 5.25
429 430 0.321671 AGAAGCGAGGTTTAGCTGCA 59.678 50.000 1.02 0.00 43.78 4.41
430 431 0.444260 GAAGCGAGGTTTAGCTGCAC 59.556 55.000 1.02 0.00 43.78 4.57
431 432 0.955919 AAGCGAGGTTTAGCTGCACC 60.956 55.000 1.02 7.88 43.78 5.01
432 433 2.399356 GCGAGGTTTAGCTGCACCC 61.399 63.158 11.59 4.26 32.92 4.61
433 434 1.745489 CGAGGTTTAGCTGCACCCC 60.745 63.158 11.59 0.70 32.92 4.95
434 435 1.378646 GAGGTTTAGCTGCACCCCC 60.379 63.158 11.59 0.00 32.92 5.40
435 436 2.137177 GAGGTTTAGCTGCACCCCCA 62.137 60.000 11.59 0.00 32.92 4.96
436 437 1.977009 GGTTTAGCTGCACCCCCAC 60.977 63.158 1.02 0.00 0.00 4.61
437 438 1.977009 GTTTAGCTGCACCCCCACC 60.977 63.158 1.02 0.00 0.00 4.61
438 439 2.465294 TTTAGCTGCACCCCCACCA 61.465 57.895 1.02 0.00 0.00 4.17
439 440 2.012824 TTTAGCTGCACCCCCACCAA 62.013 55.000 1.02 0.00 0.00 3.67
440 441 2.012824 TTAGCTGCACCCCCACCAAA 62.013 55.000 1.02 0.00 0.00 3.28
441 442 2.706952 TAGCTGCACCCCCACCAAAC 62.707 60.000 1.02 0.00 0.00 2.93
442 443 2.198426 CTGCACCCCCACCAAACT 59.802 61.111 0.00 0.00 0.00 2.66
443 444 1.903404 CTGCACCCCCACCAAACTC 60.903 63.158 0.00 0.00 0.00 3.01
444 445 2.600470 GCACCCCCACCAAACTCC 60.600 66.667 0.00 0.00 0.00 3.85
445 446 2.117423 CACCCCCACCAAACTCCC 59.883 66.667 0.00 0.00 0.00 4.30
446 447 2.370403 ACCCCCACCAAACTCCCA 60.370 61.111 0.00 0.00 0.00 4.37
447 448 1.782608 ACCCCCACCAAACTCCCAT 60.783 57.895 0.00 0.00 0.00 4.00
448 449 1.376249 ACCCCCACCAAACTCCCATT 61.376 55.000 0.00 0.00 0.00 3.16
449 450 0.614697 CCCCCACCAAACTCCCATTC 60.615 60.000 0.00 0.00 0.00 2.67
450 451 0.409484 CCCCACCAAACTCCCATTCT 59.591 55.000 0.00 0.00 0.00 2.40
451 452 1.638589 CCCCACCAAACTCCCATTCTA 59.361 52.381 0.00 0.00 0.00 2.10
452 453 2.244769 CCCCACCAAACTCCCATTCTAT 59.755 50.000 0.00 0.00 0.00 1.98
453 454 3.309848 CCCCACCAAACTCCCATTCTATT 60.310 47.826 0.00 0.00 0.00 1.73
454 455 3.954258 CCCACCAAACTCCCATTCTATTC 59.046 47.826 0.00 0.00 0.00 1.75
455 456 3.954258 CCACCAAACTCCCATTCTATTCC 59.046 47.826 0.00 0.00 0.00 3.01
456 457 4.325344 CCACCAAACTCCCATTCTATTCCT 60.325 45.833 0.00 0.00 0.00 3.36
457 458 4.884164 CACCAAACTCCCATTCTATTCCTC 59.116 45.833 0.00 0.00 0.00 3.71
458 459 4.540099 ACCAAACTCCCATTCTATTCCTCA 59.460 41.667 0.00 0.00 0.00 3.86
459 460 5.015178 ACCAAACTCCCATTCTATTCCTCAA 59.985 40.000 0.00 0.00 0.00 3.02
460 461 5.951747 CCAAACTCCCATTCTATTCCTCAAA 59.048 40.000 0.00 0.00 0.00 2.69
461 462 6.437162 CCAAACTCCCATTCTATTCCTCAAAA 59.563 38.462 0.00 0.00 0.00 2.44
462 463 7.124750 CCAAACTCCCATTCTATTCCTCAAAAT 59.875 37.037 0.00 0.00 0.00 1.82
463 464 9.189156 CAAACTCCCATTCTATTCCTCAAAATA 57.811 33.333 0.00 0.00 0.00 1.40
464 465 9.942526 AAACTCCCATTCTATTCCTCAAAATAT 57.057 29.630 0.00 0.00 0.00 1.28
477 478 8.966155 TTCCTCAAAATATAAAACTCCCCTTT 57.034 30.769 0.00 0.00 0.00 3.11
478 479 8.361169 TCCTCAAAATATAAAACTCCCCTTTG 57.639 34.615 0.00 0.00 0.00 2.77
505 508 3.564053 AAACCCACGAACTCCTACAAA 57.436 42.857 0.00 0.00 0.00 2.83
506 509 2.833631 ACCCACGAACTCCTACAAAG 57.166 50.000 0.00 0.00 0.00 2.77
507 510 2.044758 ACCCACGAACTCCTACAAAGT 58.955 47.619 0.00 0.00 0.00 2.66
508 511 2.036862 ACCCACGAACTCCTACAAAGTC 59.963 50.000 0.00 0.00 0.00 3.01
510 513 3.576648 CCACGAACTCCTACAAAGTCTC 58.423 50.000 0.00 0.00 0.00 3.36
511 514 3.235195 CACGAACTCCTACAAAGTCTCG 58.765 50.000 0.00 0.00 35.42 4.04
512 515 2.883386 ACGAACTCCTACAAAGTCTCGT 59.117 45.455 0.00 0.00 36.55 4.18
539 542 3.070302 ACCAAAGAGAGAGACACCAGTTC 59.930 47.826 0.00 0.00 0.00 3.01
555 558 2.028658 CAGTTCCTGTGAAGCTCAGCTA 60.029 50.000 0.00 0.00 38.25 3.32
556 559 2.634940 AGTTCCTGTGAAGCTCAGCTAA 59.365 45.455 0.00 0.00 38.25 3.09
702 705 2.834574 TGTGTAACGCCACTTGTTTG 57.165 45.000 2.72 0.00 42.39 2.93
722 725 4.142609 TGTCAAGATTACCAGCTCCATC 57.857 45.455 0.00 0.00 0.00 3.51
729 732 4.910304 AGATTACCAGCTCCATCTAACCAT 59.090 41.667 0.00 0.00 0.00 3.55
733 736 5.041191 ACCAGCTCCATCTAACCATTTAG 57.959 43.478 0.00 0.00 36.73 1.85
810 815 2.356665 TGCCACAAGCCTCAAAGTAA 57.643 45.000 0.00 0.00 42.71 2.24
823 828 5.357314 GCCTCAAAGTAACTTTATCTTCCCC 59.643 44.000 0.00 0.00 31.96 4.81
830 835 6.849151 AGTAACTTTATCTTCCCCACTTTGT 58.151 36.000 0.00 0.00 0.00 2.83
833 838 3.343941 TTATCTTCCCCACTTTGTCCG 57.656 47.619 0.00 0.00 0.00 4.79
948 958 4.941309 ACGCAACGGGACCCAACC 62.941 66.667 12.15 0.00 0.00 3.77
982 998 3.118629 TCATTCTCACATCCACTGTAGCC 60.119 47.826 0.00 0.00 35.91 3.93
994 1010 3.495100 CCACTGTAGCCCATATGACTTCC 60.495 52.174 3.65 0.00 0.00 3.46
1014 1031 2.028930 CCGACTTGAGACTAGGTTTGCT 60.029 50.000 0.00 0.00 0.00 3.91
1067 1085 3.510360 GTGCGTATATATGAGGTGACCCT 59.490 47.826 6.12 0.00 46.66 4.34
1159 1192 1.748329 CGGCGATCCAGGGAAGATGA 61.748 60.000 0.00 0.00 0.00 2.92
1276 1309 2.870435 GCCAAGACGCTTAAGGTCAGAA 60.870 50.000 19.72 0.00 36.87 3.02
1327 1360 6.373005 TTCTCCATTATCTGTTCAAGGTCA 57.627 37.500 0.00 0.00 0.00 4.02
1362 1395 4.040829 TGATCTCCTTGTCAGCTGAAGAAA 59.959 41.667 20.19 12.35 0.00 2.52
1426 1463 7.950512 TCATGAAACTTCTGGCTTTGATTTTA 58.049 30.769 0.00 0.00 0.00 1.52
1428 1465 8.706035 CATGAAACTTCTGGCTTTGATTTTAAG 58.294 33.333 0.00 0.00 0.00 1.85
1432 1469 7.823745 ACTTCTGGCTTTGATTTTAAGAGAA 57.176 32.000 0.00 0.00 0.00 2.87
1433 1470 7.652727 ACTTCTGGCTTTGATTTTAAGAGAAC 58.347 34.615 0.00 0.00 0.00 3.01
1434 1471 6.241207 TCTGGCTTTGATTTTAAGAGAACG 57.759 37.500 0.00 0.00 0.00 3.95
1436 1473 5.757886 TGGCTTTGATTTTAAGAGAACGTG 58.242 37.500 0.00 0.00 0.00 4.49
1438 1475 5.625311 GGCTTTGATTTTAAGAGAACGTGTG 59.375 40.000 0.00 0.00 0.00 3.82
1443 1480 7.416154 TGATTTTAAGAGAACGTGTGGTTAG 57.584 36.000 0.00 0.00 39.50 2.34
1444 1481 7.211573 TGATTTTAAGAGAACGTGTGGTTAGA 58.788 34.615 0.00 0.00 39.50 2.10
1446 1483 7.846644 TTTTAAGAGAACGTGTGGTTAGAAA 57.153 32.000 0.00 0.00 39.50 2.52
1452 1489 5.816919 AGAACGTGTGGTTAGAAATGTTTG 58.183 37.500 0.00 0.00 39.50 2.93
1454 1491 4.200874 ACGTGTGGTTAGAAATGTTTGGA 58.799 39.130 0.00 0.00 0.00 3.53
1456 1493 5.300792 ACGTGTGGTTAGAAATGTTTGGAAT 59.699 36.000 0.00 0.00 0.00 3.01
1457 1494 5.629020 CGTGTGGTTAGAAATGTTTGGAATG 59.371 40.000 0.00 0.00 0.00 2.67
1458 1495 6.514212 CGTGTGGTTAGAAATGTTTGGAATGA 60.514 38.462 0.00 0.00 0.00 2.57
1459 1496 6.640907 GTGTGGTTAGAAATGTTTGGAATGAC 59.359 38.462 0.00 0.00 0.00 3.06
1460 1497 6.549364 TGTGGTTAGAAATGTTTGGAATGACT 59.451 34.615 0.00 0.00 0.00 3.41
1463 1500 7.451255 TGGTTAGAAATGTTTGGAATGACTGAT 59.549 33.333 0.00 0.00 0.00 2.90
1557 1601 1.586154 GGTGACAAGGGCATCAACGG 61.586 60.000 0.00 0.00 0.00 4.44
1847 1912 4.394920 CACAATAACGTATGGCCAAGAAGT 59.605 41.667 10.96 6.65 0.00 3.01
1909 1975 5.869888 GCCATACTCATACTACAAGCATACC 59.130 44.000 0.00 0.00 0.00 2.73
1920 1986 0.537188 AAGCATACCACACGCTAGCT 59.463 50.000 13.93 0.00 34.11 3.32
1935 2001 9.000018 CACACGCTAGCTAAAAATTTATTTCTC 58.000 33.333 13.93 0.00 0.00 2.87
1961 2027 6.989169 GTGGAATCTATCTTCTTACACATGCT 59.011 38.462 0.00 0.00 0.00 3.79
2069 2144 0.754957 CAACTGGGTGCAGGTGGAAA 60.755 55.000 0.00 0.00 36.31 3.13
2159 2234 1.860676 GCGCCGTCACTTATATTCCA 58.139 50.000 0.00 0.00 0.00 3.53
2187 2262 2.815647 GCCTCAAAGTCCGCTCGG 60.816 66.667 1.14 1.14 0.00 4.63
2217 2292 5.803967 CCTGCTTCATTTGTCATCTTTTAGC 59.196 40.000 0.00 0.00 0.00 3.09
2228 2303 8.932945 TTGTCATCTTTTAGCTACTCTGTATG 57.067 34.615 0.00 0.00 0.00 2.39
2229 2304 8.067751 TGTCATCTTTTAGCTACTCTGTATGT 57.932 34.615 0.00 0.00 0.00 2.29
2266 2341 6.404708 ACAAGCTGAGGCATATCTATATGTG 58.595 40.000 10.77 2.87 41.63 3.21
2309 2384 8.041919 TGTGACAAGGACGGAATAATTTATGTA 58.958 33.333 0.00 0.00 0.00 2.29
2373 2451 1.414919 AGTGGAAGACCGTGTTGCTTA 59.585 47.619 1.67 0.00 39.42 3.09
2395 2474 7.411804 GCTTAGTGCATTGCGTCAATTTTTATT 60.412 33.333 3.84 0.00 42.31 1.40
2418 2497 3.626028 ACTTTTTCGTCTGGTGATTGC 57.374 42.857 0.00 0.00 0.00 3.56
2421 2500 2.542020 TTTCGTCTGGTGATTGCTGA 57.458 45.000 0.00 0.00 0.00 4.26
2422 2501 2.768253 TTCGTCTGGTGATTGCTGAT 57.232 45.000 0.00 0.00 0.00 2.90
2427 2506 2.163010 GTCTGGTGATTGCTGATTGGTG 59.837 50.000 0.00 0.00 0.00 4.17
2428 2507 2.165167 CTGGTGATTGCTGATTGGTGT 58.835 47.619 0.00 0.00 0.00 4.16
2429 2508 1.887854 TGGTGATTGCTGATTGGTGTG 59.112 47.619 0.00 0.00 0.00 3.82
2430 2509 1.888512 GGTGATTGCTGATTGGTGTGT 59.111 47.619 0.00 0.00 0.00 3.72
2431 2510 2.352030 GGTGATTGCTGATTGGTGTGTG 60.352 50.000 0.00 0.00 0.00 3.82
2432 2511 1.887854 TGATTGCTGATTGGTGTGTGG 59.112 47.619 0.00 0.00 0.00 4.17
2433 2512 1.888512 GATTGCTGATTGGTGTGTGGT 59.111 47.619 0.00 0.00 0.00 4.16
2434 2513 1.774110 TTGCTGATTGGTGTGTGGTT 58.226 45.000 0.00 0.00 0.00 3.67
2435 2514 1.774110 TGCTGATTGGTGTGTGGTTT 58.226 45.000 0.00 0.00 0.00 3.27
2436 2515 1.408340 TGCTGATTGGTGTGTGGTTTG 59.592 47.619 0.00 0.00 0.00 2.93
2496 2576 2.555757 GTCACTTGGCTGCTTCTTCAAT 59.444 45.455 0.00 0.00 0.00 2.57
2504 2584 2.793933 CTGCTTCTTCAATTGCCATCG 58.206 47.619 0.00 0.00 0.00 3.84
2508 2588 0.323269 TCTTCAATTGCCATCGCCCA 60.323 50.000 0.00 0.00 0.00 5.36
2520 2600 3.439825 GCCATCGCCCAAAAATTCAAAAT 59.560 39.130 0.00 0.00 0.00 1.82
2587 2668 0.040425 CCGAGCAACAAGGTTTTCCG 60.040 55.000 0.00 0.00 46.35 4.30
2612 2693 3.627395 ATTTGATAAGTGGAGTGGCGA 57.373 42.857 0.00 0.00 0.00 5.54
2616 2697 0.541392 ATAAGTGGAGTGGCGATGCA 59.459 50.000 0.00 0.00 0.00 3.96
2684 2765 2.907892 AGACATGGGTGAGGAAGAAGA 58.092 47.619 0.00 0.00 0.00 2.87
2699 2780 8.432805 TGAGGAAGAAGAGTGAGATTTTAGTTT 58.567 33.333 0.00 0.00 0.00 2.66
2721 2802 2.568623 AATAGACCCGGGCATTCATC 57.431 50.000 24.08 9.80 0.00 2.92
2725 2806 0.535102 GACCCGGGCATTCATCGATT 60.535 55.000 24.08 0.00 0.00 3.34
2726 2807 0.819259 ACCCGGGCATTCATCGATTG 60.819 55.000 24.08 0.00 0.00 2.67
2733 2814 1.002033 GCATTCATCGATTGGTCCAGC 60.002 52.381 0.00 0.00 0.00 4.85
2756 2837 5.899299 CTTTAAAAAGCCTGATCCTGGATG 58.101 41.667 15.25 0.60 0.00 3.51
2757 2838 3.744940 AAAAAGCCTGATCCTGGATGA 57.255 42.857 15.25 4.48 0.00 2.92
2758 2839 3.744940 AAAAGCCTGATCCTGGATGAA 57.255 42.857 15.25 1.02 0.00 2.57
2759 2840 3.744940 AAAGCCTGATCCTGGATGAAA 57.255 42.857 15.25 0.00 0.00 2.69
2760 2841 3.744940 AAGCCTGATCCTGGATGAAAA 57.255 42.857 15.25 0.00 0.00 2.29
2761 2842 3.967467 AGCCTGATCCTGGATGAAAAT 57.033 42.857 15.25 0.00 0.00 1.82
2762 2843 3.830121 AGCCTGATCCTGGATGAAAATC 58.170 45.455 15.25 0.00 0.00 2.17
2763 2844 2.889678 GCCTGATCCTGGATGAAAATCC 59.110 50.000 15.25 0.00 41.10 3.01
2764 2845 3.144506 CCTGATCCTGGATGAAAATCCG 58.855 50.000 15.25 0.00 43.62 4.18
2765 2846 3.434167 CCTGATCCTGGATGAAAATCCGT 60.434 47.826 15.25 0.00 43.62 4.69
2766 2847 4.202357 CCTGATCCTGGATGAAAATCCGTA 60.202 45.833 15.25 0.00 43.62 4.02
2767 2848 5.366482 TGATCCTGGATGAAAATCCGTAA 57.634 39.130 15.25 0.00 43.62 3.18
2768 2849 5.750524 TGATCCTGGATGAAAATCCGTAAA 58.249 37.500 15.25 0.00 43.62 2.01
2769 2850 5.822519 TGATCCTGGATGAAAATCCGTAAAG 59.177 40.000 15.25 0.00 43.62 1.85
2770 2851 3.945285 TCCTGGATGAAAATCCGTAAAGC 59.055 43.478 0.00 0.00 43.62 3.51
2772 2853 2.096819 TGGATGAAAATCCGTAAAGCGC 59.903 45.455 0.00 0.00 43.62 5.92
2774 2855 2.604969 TGAAAATCCGTAAAGCGCAC 57.395 45.000 11.47 0.00 39.71 5.34
2775 2856 1.136197 TGAAAATCCGTAAAGCGCACG 60.136 47.619 11.47 11.43 39.71 5.34
2777 2858 0.719465 AAATCCGTAAAGCGCACGAG 59.281 50.000 18.96 9.87 41.91 4.18
2778 2859 1.693083 AATCCGTAAAGCGCACGAGC 61.693 55.000 18.96 0.00 41.91 5.03
2794 2875 2.060383 AGCTCGCCTGCTCATGGTA 61.060 57.895 0.00 0.00 39.34 3.25
2796 2877 0.948141 GCTCGCCTGCTCATGGTATC 60.948 60.000 0.00 0.00 0.00 2.24
2797 2878 0.665670 CTCGCCTGCTCATGGTATCG 60.666 60.000 0.00 0.00 0.00 2.92
2798 2879 1.665916 CGCCTGCTCATGGTATCGG 60.666 63.158 0.00 0.00 0.00 4.18
2799 2880 1.963338 GCCTGCTCATGGTATCGGC 60.963 63.158 0.00 0.00 0.00 5.54
2800 2881 1.750930 CCTGCTCATGGTATCGGCT 59.249 57.895 0.00 0.00 0.00 5.52
2802 2883 1.226686 CTGCTCATGGTATCGGCTGC 61.227 60.000 0.00 0.00 0.00 5.25
2803 2884 1.963338 GCTCATGGTATCGGCTGCC 60.963 63.158 9.11 9.11 0.00 4.85
2813 2894 3.357079 CGGCTGCCGTTTGCTCTT 61.357 61.111 31.72 0.00 42.73 2.85
2814 2895 2.032634 CGGCTGCCGTTTGCTCTTA 61.033 57.895 31.72 0.00 42.73 2.10
2815 2896 1.573829 CGGCTGCCGTTTGCTCTTAA 61.574 55.000 31.72 0.00 42.73 1.85
2817 2898 1.202348 GGCTGCCGTTTGCTCTTAATT 59.798 47.619 1.35 0.00 42.00 1.40
2818 2899 2.253603 GCTGCCGTTTGCTCTTAATTG 58.746 47.619 0.00 0.00 42.00 2.32
2819 2900 2.867429 CTGCCGTTTGCTCTTAATTGG 58.133 47.619 0.00 0.00 42.00 3.16
2820 2901 1.543802 TGCCGTTTGCTCTTAATTGGG 59.456 47.619 0.00 0.00 42.00 4.12
2821 2902 1.816224 GCCGTTTGCTCTTAATTGGGA 59.184 47.619 0.00 0.00 36.87 4.37
2822 2903 2.427095 GCCGTTTGCTCTTAATTGGGAT 59.573 45.455 0.00 0.00 36.87 3.85
2823 2904 3.489229 GCCGTTTGCTCTTAATTGGGATC 60.489 47.826 0.00 0.00 36.87 3.36
2824 2905 3.066760 CCGTTTGCTCTTAATTGGGATCC 59.933 47.826 1.92 1.92 0.00 3.36
2825 2906 3.947834 CGTTTGCTCTTAATTGGGATCCT 59.052 43.478 12.58 0.00 0.00 3.24
2826 2907 4.201950 CGTTTGCTCTTAATTGGGATCCTG 60.202 45.833 12.58 0.00 0.00 3.86
2827 2908 3.582998 TGCTCTTAATTGGGATCCTGG 57.417 47.619 12.58 0.00 0.00 4.45
2828 2909 2.234143 GCTCTTAATTGGGATCCTGGC 58.766 52.381 12.58 0.00 0.00 4.85
2829 2910 2.868899 CTCTTAATTGGGATCCTGGCC 58.131 52.381 12.58 0.00 0.00 5.36
2830 2911 1.142870 TCTTAATTGGGATCCTGGCCG 59.857 52.381 12.58 0.00 0.00 6.13
2831 2912 0.467290 TTAATTGGGATCCTGGCCGC 60.467 55.000 12.58 0.00 0.00 6.53
2832 2913 2.674563 TAATTGGGATCCTGGCCGCG 62.675 60.000 12.58 0.00 0.00 6.46
2844 2925 3.996073 GCCGCGCCATGTATTTTG 58.004 55.556 0.00 0.00 0.00 2.44
2845 2926 1.588667 GCCGCGCCATGTATTTTGG 60.589 57.895 0.00 0.00 37.31 3.28
2846 2927 1.806568 CCGCGCCATGTATTTTGGT 59.193 52.632 0.00 0.00 36.57 3.67
2848 2929 1.002900 CCGCGCCATGTATTTTGGTAG 60.003 52.381 0.00 0.00 36.57 3.18
2849 2930 1.668751 CGCGCCATGTATTTTGGTAGT 59.331 47.619 0.00 0.00 36.57 2.73
2851 2932 3.059868 CGCGCCATGTATTTTGGTAGTAG 60.060 47.826 0.00 0.00 36.57 2.57
2852 2933 3.875134 GCGCCATGTATTTTGGTAGTAGT 59.125 43.478 0.00 0.00 36.57 2.73
2853 2934 5.051816 GCGCCATGTATTTTGGTAGTAGTA 58.948 41.667 0.00 0.00 36.57 1.82
2856 2937 7.548075 GCGCCATGTATTTTGGTAGTAGTATAT 59.452 37.037 0.00 0.00 36.57 0.86
2857 2938 8.869897 CGCCATGTATTTTGGTAGTAGTATATG 58.130 37.037 0.00 0.00 36.57 1.78
2858 2939 8.665685 GCCATGTATTTTGGTAGTAGTATATGC 58.334 37.037 0.00 0.00 36.57 3.14
2859 2940 9.944376 CCATGTATTTTGGTAGTAGTATATGCT 57.056 33.333 0.00 0.00 0.00 3.79
2861 2942 9.856488 ATGTATTTTGGTAGTAGTATATGCTCG 57.144 33.333 0.00 0.00 0.00 5.03
2862 2943 7.811236 TGTATTTTGGTAGTAGTATATGCTCGC 59.189 37.037 0.00 0.00 0.00 5.03
2864 2945 5.977489 TTGGTAGTAGTATATGCTCGCAT 57.023 39.130 9.57 9.57 40.19 4.73
2865 2946 5.310720 TGGTAGTAGTATATGCTCGCATG 57.689 43.478 14.27 0.00 37.82 4.06
2866 2947 4.106197 GGTAGTAGTATATGCTCGCATGC 58.894 47.826 14.27 7.91 37.82 4.06
2868 2949 3.842820 AGTAGTATATGCTCGCATGCTG 58.157 45.455 17.13 9.63 37.82 4.41
2870 2951 2.956913 AGTATATGCTCGCATGCTGAG 58.043 47.619 25.43 25.43 37.82 3.35
2871 2952 2.560105 AGTATATGCTCGCATGCTGAGA 59.440 45.455 30.54 20.31 37.82 3.27
2875 2956 0.800631 TGCTCGCATGCTGAGAAAAG 59.199 50.000 30.54 14.09 35.43 2.27
2877 2958 0.731417 CTCGCATGCTGAGAAAAGGG 59.269 55.000 25.52 2.50 35.43 3.95
2878 2959 0.036732 TCGCATGCTGAGAAAAGGGT 59.963 50.000 17.13 0.00 0.00 4.34
2879 2960 0.449388 CGCATGCTGAGAAAAGGGTC 59.551 55.000 17.13 0.00 0.00 4.46
2880 2961 0.449388 GCATGCTGAGAAAAGGGTCG 59.551 55.000 11.37 0.00 0.00 4.79
2881 2962 1.813513 CATGCTGAGAAAAGGGTCGT 58.186 50.000 0.00 0.00 0.00 4.34
2882 2963 1.466167 CATGCTGAGAAAAGGGTCGTG 59.534 52.381 0.00 0.00 0.00 4.35
2883 2964 0.468226 TGCTGAGAAAAGGGTCGTGT 59.532 50.000 0.00 0.00 0.00 4.49
2884 2965 1.689813 TGCTGAGAAAAGGGTCGTGTA 59.310 47.619 0.00 0.00 0.00 2.90
2885 2966 2.288825 TGCTGAGAAAAGGGTCGTGTAG 60.289 50.000 0.00 0.00 0.00 2.74
2886 2967 2.029290 GCTGAGAAAAGGGTCGTGTAGA 60.029 50.000 0.00 0.00 0.00 2.59
2887 2968 3.839293 CTGAGAAAAGGGTCGTGTAGAG 58.161 50.000 0.00 0.00 0.00 2.43
2888 2969 3.493334 TGAGAAAAGGGTCGTGTAGAGA 58.507 45.455 0.00 0.00 0.00 3.10
2889 2970 3.255149 TGAGAAAAGGGTCGTGTAGAGAC 59.745 47.826 0.00 0.00 37.86 3.36
2890 2971 2.228343 AGAAAAGGGTCGTGTAGAGACG 59.772 50.000 0.00 0.00 39.38 4.18
2891 2972 1.613836 AAAGGGTCGTGTAGAGACGT 58.386 50.000 0.00 0.00 40.34 4.34
2892 2973 1.613836 AAGGGTCGTGTAGAGACGTT 58.386 50.000 0.00 0.00 40.34 3.99
2893 2974 1.163554 AGGGTCGTGTAGAGACGTTC 58.836 55.000 0.00 0.00 40.34 3.95
2894 2975 1.163554 GGGTCGTGTAGAGACGTTCT 58.836 55.000 0.00 0.00 40.34 3.01
2895 2976 1.130186 GGGTCGTGTAGAGACGTTCTC 59.870 57.143 6.85 6.85 43.70 2.87
2904 2985 0.109039 GAGACGTTCTCTGACCCAGC 60.109 60.000 0.00 0.00 40.30 4.85
2905 2986 0.827925 AGACGTTCTCTGACCCAGCA 60.828 55.000 0.00 0.00 0.00 4.41
2906 2987 0.389166 GACGTTCTCTGACCCAGCAG 60.389 60.000 0.00 0.00 37.24 4.24
2907 2988 0.827925 ACGTTCTCTGACCCAGCAGA 60.828 55.000 0.00 0.00 42.31 4.26
2908 2989 0.318441 CGTTCTCTGACCCAGCAGAA 59.682 55.000 0.00 0.00 43.75 3.02
2909 2990 1.671261 CGTTCTCTGACCCAGCAGAAG 60.671 57.143 0.00 0.00 43.75 2.85
2910 2991 0.322975 TTCTCTGACCCAGCAGAAGC 59.677 55.000 0.00 0.00 43.75 3.86
2911 2992 1.078567 CTCTGACCCAGCAGAAGCC 60.079 63.158 0.00 0.00 43.75 4.35
2912 2993 1.834856 CTCTGACCCAGCAGAAGCCA 61.835 60.000 0.00 0.00 43.75 4.75
2913 2994 1.203441 TCTGACCCAGCAGAAGCCAT 61.203 55.000 0.00 0.00 41.65 4.40
2914 2995 0.747283 CTGACCCAGCAGAAGCCATC 60.747 60.000 0.00 0.00 43.56 3.51
2915 2996 1.452833 GACCCAGCAGAAGCCATCC 60.453 63.158 0.00 0.00 43.56 3.51
2916 2997 2.515523 CCCAGCAGAAGCCATCCG 60.516 66.667 0.00 0.00 43.56 4.18
2917 2998 3.207669 CCAGCAGAAGCCATCCGC 61.208 66.667 0.00 0.00 43.56 5.54
2918 2999 3.207669 CAGCAGAAGCCATCCGCC 61.208 66.667 0.00 0.00 43.56 6.13
2919 3000 4.845580 AGCAGAAGCCATCCGCCG 62.846 66.667 0.00 0.00 43.56 6.46
2921 3002 2.436646 CAGAAGCCATCCGCCGTT 60.437 61.111 0.00 0.00 38.78 4.44
2922 3003 2.040544 CAGAAGCCATCCGCCGTTT 61.041 57.895 0.00 0.00 38.78 3.60
2923 3004 2.040544 AGAAGCCATCCGCCGTTTG 61.041 57.895 0.00 0.00 38.78 2.93
2924 3005 2.282180 AAGCCATCCGCCGTTTGT 60.282 55.556 0.00 0.00 38.78 2.83
2925 3006 2.527547 GAAGCCATCCGCCGTTTGTG 62.528 60.000 0.00 0.00 38.78 3.33
2926 3007 4.776647 GCCATCCGCCGTTTGTGC 62.777 66.667 0.00 0.00 0.00 4.57
2927 3008 3.361158 CCATCCGCCGTTTGTGCA 61.361 61.111 0.00 0.00 0.00 4.57
2928 3009 2.176546 CATCCGCCGTTTGTGCAG 59.823 61.111 0.00 0.00 0.00 4.41
2929 3010 3.737172 ATCCGCCGTTTGTGCAGC 61.737 61.111 0.00 0.00 0.00 5.25
2973 3054 2.332654 GGTGTTCCACCGGCACATC 61.333 63.158 0.00 0.00 44.95 3.06
2974 3055 2.033448 TGTTCCACCGGCACATCC 59.967 61.111 0.00 0.00 0.00 3.51
2983 3064 4.217035 GGCACATCCGCACATGTA 57.783 55.556 0.00 0.00 35.10 2.29
2984 3065 2.706636 GGCACATCCGCACATGTAT 58.293 52.632 0.00 0.00 35.10 2.29
2985 3066 1.024271 GGCACATCCGCACATGTATT 58.976 50.000 0.00 0.00 35.10 1.89
2986 3067 1.268692 GGCACATCCGCACATGTATTG 60.269 52.381 0.00 0.00 35.10 1.90
2987 3068 1.401552 GCACATCCGCACATGTATTGT 59.598 47.619 0.00 0.00 39.91 2.71
2988 3069 2.539547 GCACATCCGCACATGTATTGTC 60.540 50.000 0.00 0.00 36.00 3.18
2989 3070 1.933181 ACATCCGCACATGTATTGTCG 59.067 47.619 0.00 0.00 36.00 4.35
2990 3071 2.200899 CATCCGCACATGTATTGTCGA 58.799 47.619 0.00 0.00 36.00 4.20
3052 3133 0.952497 AGCTGTGCTGGTCATCAACG 60.952 55.000 0.00 0.00 37.57 4.10
3065 3146 2.011947 CATCAACGATGAGCATGTGGT 58.988 47.619 0.82 0.00 42.09 4.16
3097 3178 2.093467 GTCGAAATCAGCTCTGAACTGC 59.907 50.000 3.47 0.00 43.58 4.40
3125 3209 0.739813 GGTGTAGTAGCAAGGTGCCG 60.740 60.000 0.00 0.00 46.52 5.69
3196 3280 4.469227 AGGATAGATATGATGTCCAGCCAC 59.531 45.833 0.00 0.00 0.00 5.01
3268 3356 1.661463 TGCTCAATCTCAACCTCCCT 58.339 50.000 0.00 0.00 0.00 4.20
3308 3396 4.285517 TGCCTTTCATTTATTTCCAAGCCA 59.714 37.500 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 9.036671 CGTTTGGAAAAATGGTAAACAAGTATT 57.963 29.630 0.00 0.00 32.36 1.89
76 77 8.414778 TCGTTTGGAAAAATGGTAAACAAGTAT 58.585 29.630 0.00 0.00 32.36 2.12
77 78 7.769220 TCGTTTGGAAAAATGGTAAACAAGTA 58.231 30.769 0.00 0.00 32.36 2.24
78 79 6.631962 TCGTTTGGAAAAATGGTAAACAAGT 58.368 32.000 0.00 0.00 32.36 3.16
79 80 7.707774 ATCGTTTGGAAAAATGGTAAACAAG 57.292 32.000 0.00 0.00 32.36 3.16
80 81 7.764443 TCAATCGTTTGGAAAAATGGTAAACAA 59.236 29.630 6.39 0.00 33.44 2.83
81 82 7.265673 TCAATCGTTTGGAAAAATGGTAAACA 58.734 30.769 6.39 0.00 33.44 2.83
82 83 7.701809 TCAATCGTTTGGAAAAATGGTAAAC 57.298 32.000 6.39 0.00 33.44 2.01
83 84 8.768955 CAATCAATCGTTTGGAAAAATGGTAAA 58.231 29.630 6.39 0.00 33.44 2.01
84 85 8.144478 TCAATCAATCGTTTGGAAAAATGGTAA 58.856 29.630 6.39 0.00 33.44 2.85
85 86 7.661968 TCAATCAATCGTTTGGAAAAATGGTA 58.338 30.769 6.39 0.00 33.44 3.25
86 87 6.520272 TCAATCAATCGTTTGGAAAAATGGT 58.480 32.000 6.39 0.00 33.44 3.55
87 88 7.171337 AGTTCAATCAATCGTTTGGAAAAATGG 59.829 33.333 6.39 0.00 33.44 3.16
88 89 8.075593 AGTTCAATCAATCGTTTGGAAAAATG 57.924 30.769 6.39 0.00 33.44 2.32
89 90 8.661352 AAGTTCAATCAATCGTTTGGAAAAAT 57.339 26.923 6.39 0.00 33.44 1.82
90 91 8.485976 AAAGTTCAATCAATCGTTTGGAAAAA 57.514 26.923 6.39 0.00 33.44 1.94
91 92 8.485976 AAAAGTTCAATCAATCGTTTGGAAAA 57.514 26.923 6.39 0.00 33.44 2.29
92 93 8.485976 AAAAAGTTCAATCAATCGTTTGGAAA 57.514 26.923 6.39 0.00 33.44 3.13
175 176 9.283768 TGTGTATACAAAAACTGATTCTCATGT 57.716 29.630 7.25 0.00 32.88 3.21
316 317 9.413048 TCACGTTTTATGTTTTTGTTCTTTCTT 57.587 25.926 0.00 0.00 0.00 2.52
317 318 8.973835 TCACGTTTTATGTTTTTGTTCTTTCT 57.026 26.923 0.00 0.00 0.00 2.52
347 348 4.803613 CACAGCTTCGCTTTTTAGGTTTTT 59.196 37.500 0.00 0.00 36.40 1.94
348 349 4.359706 CACAGCTTCGCTTTTTAGGTTTT 58.640 39.130 0.00 0.00 36.40 2.43
349 350 3.243401 CCACAGCTTCGCTTTTTAGGTTT 60.243 43.478 0.00 0.00 36.40 3.27
350 351 2.293399 CCACAGCTTCGCTTTTTAGGTT 59.707 45.455 0.00 0.00 36.40 3.50
351 352 1.880027 CCACAGCTTCGCTTTTTAGGT 59.120 47.619 0.00 0.00 36.40 3.08
352 353 1.401539 GCCACAGCTTCGCTTTTTAGG 60.402 52.381 0.00 0.00 36.40 2.69
353 354 1.401539 GGCCACAGCTTCGCTTTTTAG 60.402 52.381 0.00 0.00 36.40 1.85
354 355 0.596082 GGCCACAGCTTCGCTTTTTA 59.404 50.000 0.00 0.00 36.40 1.52
355 356 1.109323 AGGCCACAGCTTCGCTTTTT 61.109 50.000 5.01 0.00 36.40 1.94
356 357 1.518903 GAGGCCACAGCTTCGCTTTT 61.519 55.000 5.01 0.00 36.40 2.27
357 358 1.968540 GAGGCCACAGCTTCGCTTT 60.969 57.895 5.01 0.00 36.40 3.51
358 359 2.359230 GAGGCCACAGCTTCGCTT 60.359 61.111 5.01 0.00 36.40 4.68
362 363 2.684843 CGCAAGAGGCCACAGCTTC 61.685 63.158 5.01 0.00 45.15 3.86
363 364 2.670934 CGCAAGAGGCCACAGCTT 60.671 61.111 5.01 0.00 40.31 3.74
387 388 2.202892 GAACGAGATGGGTCGGCC 60.203 66.667 0.00 0.00 44.53 6.13
388 389 1.227002 GAGAACGAGATGGGTCGGC 60.227 63.158 0.00 0.00 44.53 5.54
389 390 1.064296 CGAGAACGAGATGGGTCGG 59.936 63.158 0.00 0.00 44.53 4.79
390 391 1.586564 GCGAGAACGAGATGGGTCG 60.587 63.158 0.00 0.00 45.76 4.79
391 392 1.002251 CTAGCGAGAACGAGATGGGTC 60.002 57.143 0.00 0.00 42.66 4.46
392 393 1.025812 CTAGCGAGAACGAGATGGGT 58.974 55.000 0.00 0.00 42.66 4.51
393 394 1.309950 TCTAGCGAGAACGAGATGGG 58.690 55.000 0.00 0.00 42.66 4.00
394 395 2.856720 GCTTCTAGCGAGAACGAGATGG 60.857 54.545 5.03 0.00 42.66 3.51
395 396 2.380660 GCTTCTAGCGAGAACGAGATG 58.619 52.381 5.03 0.00 42.66 2.90
396 397 2.766970 GCTTCTAGCGAGAACGAGAT 57.233 50.000 5.03 0.00 42.66 2.75
407 408 2.197577 CAGCTAAACCTCGCTTCTAGC 58.802 52.381 0.00 0.00 38.02 3.42
408 409 2.197577 GCAGCTAAACCTCGCTTCTAG 58.802 52.381 0.00 0.00 33.45 2.43
409 410 1.548719 TGCAGCTAAACCTCGCTTCTA 59.451 47.619 0.00 0.00 33.45 2.10
410 411 0.321671 TGCAGCTAAACCTCGCTTCT 59.678 50.000 0.00 0.00 33.45 2.85
411 412 0.444260 GTGCAGCTAAACCTCGCTTC 59.556 55.000 0.00 0.00 33.45 3.86
412 413 0.955919 GGTGCAGCTAAACCTCGCTT 60.956 55.000 9.07 0.00 33.45 4.68
413 414 1.376037 GGTGCAGCTAAACCTCGCT 60.376 57.895 9.07 0.00 36.83 4.93
414 415 2.399356 GGGTGCAGCTAAACCTCGC 61.399 63.158 16.65 0.30 36.64 5.03
415 416 1.745489 GGGGTGCAGCTAAACCTCG 60.745 63.158 16.65 0.00 36.64 4.63
416 417 1.378646 GGGGGTGCAGCTAAACCTC 60.379 63.158 16.65 11.68 36.08 3.85
417 418 2.160171 TGGGGGTGCAGCTAAACCT 61.160 57.895 16.65 0.00 36.64 3.50
418 419 1.977009 GTGGGGGTGCAGCTAAACC 60.977 63.158 16.65 13.18 35.59 3.27
419 420 1.977009 GGTGGGGGTGCAGCTAAAC 60.977 63.158 16.65 10.84 0.00 2.01
420 421 2.012824 TTGGTGGGGGTGCAGCTAAA 62.013 55.000 16.65 0.00 0.00 1.85
421 422 2.012824 TTTGGTGGGGGTGCAGCTAA 62.013 55.000 16.65 0.00 0.00 3.09
422 423 2.465294 TTTGGTGGGGGTGCAGCTA 61.465 57.895 16.65 0.00 0.00 3.32
423 424 3.831637 TTTGGTGGGGGTGCAGCT 61.832 61.111 16.65 0.00 0.00 4.24
424 425 3.615709 GTTTGGTGGGGGTGCAGC 61.616 66.667 7.55 7.55 0.00 5.25
425 426 1.903404 GAGTTTGGTGGGGGTGCAG 60.903 63.158 0.00 0.00 0.00 4.41
426 427 2.197324 GAGTTTGGTGGGGGTGCA 59.803 61.111 0.00 0.00 0.00 4.57
427 428 2.600470 GGAGTTTGGTGGGGGTGC 60.600 66.667 0.00 0.00 0.00 5.01
428 429 2.092904 ATGGGAGTTTGGTGGGGGTG 62.093 60.000 0.00 0.00 0.00 4.61
429 430 1.376249 AATGGGAGTTTGGTGGGGGT 61.376 55.000 0.00 0.00 0.00 4.95
430 431 0.614697 GAATGGGAGTTTGGTGGGGG 60.615 60.000 0.00 0.00 0.00 5.40
431 432 0.409484 AGAATGGGAGTTTGGTGGGG 59.591 55.000 0.00 0.00 0.00 4.96
432 433 3.669939 ATAGAATGGGAGTTTGGTGGG 57.330 47.619 0.00 0.00 0.00 4.61
433 434 3.954258 GGAATAGAATGGGAGTTTGGTGG 59.046 47.826 0.00 0.00 0.00 4.61
434 435 4.860022 AGGAATAGAATGGGAGTTTGGTG 58.140 43.478 0.00 0.00 0.00 4.17
435 436 4.540099 TGAGGAATAGAATGGGAGTTTGGT 59.460 41.667 0.00 0.00 0.00 3.67
436 437 5.116084 TGAGGAATAGAATGGGAGTTTGG 57.884 43.478 0.00 0.00 0.00 3.28
437 438 7.466746 TTTTGAGGAATAGAATGGGAGTTTG 57.533 36.000 0.00 0.00 0.00 2.93
438 439 9.942526 ATATTTTGAGGAATAGAATGGGAGTTT 57.057 29.630 0.00 0.00 0.00 2.66
448 449 9.862149 GGGGAGTTTTATATTTTGAGGAATAGA 57.138 33.333 0.00 0.00 0.00 1.98
449 450 9.868160 AGGGGAGTTTTATATTTTGAGGAATAG 57.132 33.333 0.00 0.00 0.00 1.73
451 452 9.560860 AAAGGGGAGTTTTATATTTTGAGGAAT 57.439 29.630 0.00 0.00 0.00 3.01
452 453 8.811994 CAAAGGGGAGTTTTATATTTTGAGGAA 58.188 33.333 0.00 0.00 0.00 3.36
453 454 7.093509 GCAAAGGGGAGTTTTATATTTTGAGGA 60.094 37.037 0.00 0.00 0.00 3.71
454 455 7.041721 GCAAAGGGGAGTTTTATATTTTGAGG 58.958 38.462 0.00 0.00 0.00 3.86
455 456 7.840931 AGCAAAGGGGAGTTTTATATTTTGAG 58.159 34.615 0.00 0.00 0.00 3.02
456 457 7.790782 AGCAAAGGGGAGTTTTATATTTTGA 57.209 32.000 0.00 0.00 0.00 2.69
457 458 9.936759 TTTAGCAAAGGGGAGTTTTATATTTTG 57.063 29.630 0.00 0.00 0.00 2.44
505 508 4.099573 TCTCTCTTTGGTGAAAACGAGACT 59.900 41.667 0.00 0.00 32.92 3.24
506 509 4.369182 TCTCTCTTTGGTGAAAACGAGAC 58.631 43.478 0.00 0.00 32.92 3.36
507 510 4.341235 TCTCTCTCTTTGGTGAAAACGAGA 59.659 41.667 0.00 0.00 34.12 4.04
508 511 4.446051 GTCTCTCTCTTTGGTGAAAACGAG 59.554 45.833 0.00 0.00 0.00 4.18
510 513 4.025647 GTGTCTCTCTCTTTGGTGAAAACG 60.026 45.833 0.00 0.00 0.00 3.60
511 514 4.273724 GGTGTCTCTCTCTTTGGTGAAAAC 59.726 45.833 0.00 0.00 0.00 2.43
512 515 4.080582 TGGTGTCTCTCTCTTTGGTGAAAA 60.081 41.667 0.00 0.00 0.00 2.29
614 617 3.510719 TCTTGTTTTTGTTGAGTGCTGC 58.489 40.909 0.00 0.00 0.00 5.25
702 705 4.414337 AGATGGAGCTGGTAATCTTGAC 57.586 45.455 0.00 0.00 0.00 3.18
722 725 4.569162 TCGCCGTCATTTCTAAATGGTTAG 59.431 41.667 13.89 4.29 44.51 2.34
729 732 4.693283 AGATGATCGCCGTCATTTCTAAA 58.307 39.130 4.21 0.00 38.88 1.85
733 736 2.600792 GCAAGATGATCGCCGTCATTTC 60.601 50.000 4.21 0.00 38.88 2.17
810 815 4.663334 GGACAAAGTGGGGAAGATAAAGT 58.337 43.478 0.00 0.00 0.00 2.66
823 828 5.351233 TGTAAACTAATGCGGACAAAGTG 57.649 39.130 0.00 0.00 0.00 3.16
830 835 3.060736 TGCCTTGTAAACTAATGCGGA 57.939 42.857 0.00 0.00 0.00 5.54
833 838 5.954335 AGTCAATGCCTTGTAAACTAATGC 58.046 37.500 1.49 0.00 33.87 3.56
909 914 5.277825 GTCTACTCTTCTCAACCATCGATG 58.722 45.833 18.76 18.76 0.00 3.84
982 998 4.098654 AGTCTCAAGTCGGAAGTCATATGG 59.901 45.833 2.13 0.00 0.00 2.74
994 1010 3.246619 GAGCAAACCTAGTCTCAAGTCG 58.753 50.000 0.00 0.00 0.00 4.18
1159 1192 0.396435 TTCCTGGTGATGCTGAACGT 59.604 50.000 0.00 0.00 0.00 3.99
1245 1278 1.916697 GCGTCTTGGCTTTGGCTCTC 61.917 60.000 0.00 0.00 38.73 3.20
1266 1299 0.324943 GCAGCAGGGTTCTGACCTTA 59.675 55.000 0.00 0.00 45.75 2.69
1276 1309 0.322277 CAGTTGATCAGCAGCAGGGT 60.322 55.000 12.41 0.00 0.00 4.34
1327 1360 4.291815 AGATCAGCGGCAGGATCT 57.708 55.556 23.26 23.26 44.03 2.75
1362 1395 8.854614 AATGAGATAACAGAGCTTTTGTAGTT 57.145 30.769 5.38 0.00 0.00 2.24
1426 1463 5.365619 ACATTTCTAACCACACGTTCTCTT 58.634 37.500 0.00 0.00 35.79 2.85
1428 1465 5.668558 AACATTTCTAACCACACGTTCTC 57.331 39.130 0.00 0.00 35.79 2.87
1432 1469 4.200874 TCCAAACATTTCTAACCACACGT 58.799 39.130 0.00 0.00 0.00 4.49
1433 1470 4.822036 TCCAAACATTTCTAACCACACG 57.178 40.909 0.00 0.00 0.00 4.49
1434 1471 6.640907 GTCATTCCAAACATTTCTAACCACAC 59.359 38.462 0.00 0.00 0.00 3.82
1436 1473 6.863126 CAGTCATTCCAAACATTTCTAACCAC 59.137 38.462 0.00 0.00 0.00 4.16
1438 1475 7.214467 TCAGTCATTCCAAACATTTCTAACC 57.786 36.000 0.00 0.00 0.00 2.85
1557 1601 0.889994 TGCCACCATCATTCTGTTGC 59.110 50.000 0.00 0.00 0.00 4.17
1847 1912 5.936187 TTTTCCACCACCTATGTCGTATA 57.064 39.130 0.00 0.00 0.00 1.47
1909 1975 8.895932 AGAAATAAATTTTTAGCTAGCGTGTG 57.104 30.769 9.55 0.00 0.00 3.82
1935 2001 6.074088 GCATGTGTAAGAAGATAGATTCCACG 60.074 42.308 0.00 0.00 0.00 4.94
1961 2027 0.389426 GCTTCTCCGTGGACGCTAAA 60.389 55.000 0.00 0.00 38.18 1.85
2078 2153 4.318332 CCGGCTCATTCAGATAAGCATAA 58.682 43.478 0.00 0.00 36.47 1.90
2114 2189 2.086869 CTTCTGCCGTTGTCATCCATT 58.913 47.619 0.00 0.00 0.00 3.16
2159 2234 3.406764 GACTTTGAGGCATCTGTCTTGT 58.593 45.455 0.00 0.00 0.00 3.16
2187 2262 2.162208 TGACAAATGAAGCAGGAATCGC 59.838 45.455 0.00 0.00 0.00 4.58
2217 2292 8.331022 GTTTTGTCATGCATACATACAGAGTAG 58.669 37.037 0.00 0.00 33.67 2.57
2228 2303 4.797471 TCAGCTTGTTTTGTCATGCATAC 58.203 39.130 0.00 0.00 39.75 2.39
2229 2304 4.082625 CCTCAGCTTGTTTTGTCATGCATA 60.083 41.667 0.00 0.00 39.75 3.14
2232 2307 2.669364 CCTCAGCTTGTTTTGTCATGC 58.331 47.619 0.00 0.00 38.30 4.06
2266 2341 2.743664 TCACAACAGCTGATGCATACAC 59.256 45.455 23.35 0.00 42.74 2.90
2309 2384 6.936900 ACAGCATTCAGACAAACTTATACACT 59.063 34.615 0.00 0.00 0.00 3.55
2350 2428 1.948104 CAACACGGTCTTCCACTTGA 58.052 50.000 0.00 0.00 0.00 3.02
2351 2429 0.307760 GCAACACGGTCTTCCACTTG 59.692 55.000 0.00 0.00 0.00 3.16
2352 2430 0.180406 AGCAACACGGTCTTCCACTT 59.820 50.000 0.00 0.00 0.00 3.16
2373 2451 6.783892 AAATAAAAATTGACGCAATGCACT 57.216 29.167 5.91 0.00 34.04 4.40
2395 2474 5.298276 AGCAATCACCAGACGAAAAAGTAAA 59.702 36.000 0.00 0.00 0.00 2.01
2405 2484 1.399440 CCAATCAGCAATCACCAGACG 59.601 52.381 0.00 0.00 0.00 4.18
2418 2497 4.606961 GTTACAAACCACACACCAATCAG 58.393 43.478 0.00 0.00 0.00 2.90
2496 2576 1.345741 TGAATTTTTGGGCGATGGCAA 59.654 42.857 1.01 0.00 42.47 4.52
2504 2584 5.342791 CGATTGCAATTTTGAATTTTTGGGC 59.657 36.000 14.33 0.00 0.00 5.36
2508 2588 7.354257 CAGGACGATTGCAATTTTGAATTTTT 58.646 30.769 14.33 0.00 0.00 1.94
2520 2600 1.971167 GCACCCAGGACGATTGCAA 60.971 57.895 0.00 0.00 33.24 4.08
2587 2668 5.582550 GCCACTCCACTTATCAAATTAAGC 58.417 41.667 0.00 0.00 33.34 3.09
2612 2693 2.224137 CGTCATCCATGGTCTAGTGCAT 60.224 50.000 12.58 0.00 0.00 3.96
2616 2697 2.160721 ACCGTCATCCATGGTCTAGT 57.839 50.000 12.58 0.37 40.97 2.57
2644 2725 3.701542 TCTATCTCACCTTCGTCATGCTT 59.298 43.478 0.00 0.00 0.00 3.91
2699 2780 4.142026 CGATGAATGCCCGGGTCTATTATA 60.142 45.833 24.63 12.79 0.00 0.98
2733 2814 5.653769 TCATCCAGGATCAGGCTTTTTAAAG 59.346 40.000 0.00 0.00 39.03 1.85
2752 2833 2.096819 TGCGCTTTACGGATTTTCATCC 59.903 45.455 9.73 0.00 45.40 3.51
2755 2836 1.136197 CGTGCGCTTTACGGATTTTCA 60.136 47.619 9.73 0.00 46.67 2.69
2756 2837 1.127213 TCGTGCGCTTTACGGATTTTC 59.873 47.619 17.23 0.00 46.67 2.29
2757 2838 1.127951 CTCGTGCGCTTTACGGATTTT 59.872 47.619 17.23 0.00 46.67 1.82
2758 2839 0.719465 CTCGTGCGCTTTACGGATTT 59.281 50.000 17.23 0.00 46.67 2.17
2759 2840 1.693083 GCTCGTGCGCTTTACGGATT 61.693 55.000 17.23 0.00 46.67 3.01
2760 2841 2.165301 GCTCGTGCGCTTTACGGAT 61.165 57.895 17.23 0.00 46.67 4.18
2761 2842 2.807895 GCTCGTGCGCTTTACGGA 60.808 61.111 17.23 5.17 43.93 4.69
2762 2843 2.789203 GAGCTCGTGCGCTTTACGG 61.789 63.158 17.23 9.99 45.42 4.02
2763 2844 2.689766 GAGCTCGTGCGCTTTACG 59.310 61.111 9.73 11.10 45.42 3.18
2764 2845 2.689766 CGAGCTCGTGCGCTTTAC 59.310 61.111 27.79 0.00 45.42 2.01
2777 2858 0.948141 GATACCATGAGCAGGCGAGC 60.948 60.000 0.00 0.00 0.00 5.03
2778 2859 0.665670 CGATACCATGAGCAGGCGAG 60.666 60.000 0.00 0.00 0.00 5.03
2779 2860 1.363807 CGATACCATGAGCAGGCGA 59.636 57.895 0.00 0.00 0.00 5.54
2780 2861 1.665916 CCGATACCATGAGCAGGCG 60.666 63.158 0.00 0.00 0.00 5.52
2781 2862 1.963338 GCCGATACCATGAGCAGGC 60.963 63.158 0.00 0.00 36.08 4.85
2782 2863 0.602106 CAGCCGATACCATGAGCAGG 60.602 60.000 0.00 0.00 0.00 4.85
2783 2864 1.226686 GCAGCCGATACCATGAGCAG 61.227 60.000 0.00 0.00 0.00 4.24
2784 2865 1.227645 GCAGCCGATACCATGAGCA 60.228 57.895 0.00 0.00 0.00 4.26
2786 2867 4.368391 GGCAGCCGATACCATGAG 57.632 61.111 0.00 0.00 0.00 2.90
2802 2883 3.066760 GGATCCCAATTAAGAGCAAACGG 59.933 47.826 0.00 0.00 0.00 4.44
2803 2884 3.947834 AGGATCCCAATTAAGAGCAAACG 59.052 43.478 8.55 0.00 0.00 3.60
2804 2885 4.098501 CCAGGATCCCAATTAAGAGCAAAC 59.901 45.833 8.55 0.00 0.00 2.93
2805 2886 4.280819 CCAGGATCCCAATTAAGAGCAAA 58.719 43.478 8.55 0.00 0.00 3.68
2806 2887 3.902218 CCAGGATCCCAATTAAGAGCAA 58.098 45.455 8.55 0.00 0.00 3.91
2807 2888 2.423373 GCCAGGATCCCAATTAAGAGCA 60.423 50.000 8.55 0.00 0.00 4.26
2808 2889 2.234143 GCCAGGATCCCAATTAAGAGC 58.766 52.381 8.55 0.00 0.00 4.09
2809 2890 2.811873 CGGCCAGGATCCCAATTAAGAG 60.812 54.545 8.55 0.00 0.00 2.85
2811 2892 1.609208 CGGCCAGGATCCCAATTAAG 58.391 55.000 8.55 0.00 0.00 1.85
2812 2893 0.467290 GCGGCCAGGATCCCAATTAA 60.467 55.000 8.55 0.00 0.00 1.40
2813 2894 1.150536 GCGGCCAGGATCCCAATTA 59.849 57.895 8.55 0.00 0.00 1.40
2814 2895 2.123726 GCGGCCAGGATCCCAATT 60.124 61.111 8.55 0.00 0.00 2.32
2815 2896 4.569180 CGCGGCCAGGATCCCAAT 62.569 66.667 8.55 0.00 0.00 3.16
2827 2908 1.588667 CCAAAATACATGGCGCGGC 60.589 57.895 27.61 27.61 0.00 6.53
2828 2909 1.002900 CTACCAAAATACATGGCGCGG 60.003 52.381 8.83 0.00 41.89 6.46
2829 2910 1.668751 ACTACCAAAATACATGGCGCG 59.331 47.619 0.00 0.00 41.89 6.86
2830 2911 3.875134 ACTACTACCAAAATACATGGCGC 59.125 43.478 0.00 0.00 41.89 6.53
2831 2912 8.869897 CATATACTACTACCAAAATACATGGCG 58.130 37.037 0.00 0.00 41.89 5.69
2832 2913 8.665685 GCATATACTACTACCAAAATACATGGC 58.334 37.037 0.00 0.00 41.89 4.40
2833 2914 9.944376 AGCATATACTACTACCAAAATACATGG 57.056 33.333 0.00 0.00 43.84 3.66
2835 2916 9.856488 CGAGCATATACTACTACCAAAATACAT 57.144 33.333 0.00 0.00 0.00 2.29
2837 2918 7.811236 TGCGAGCATATACTACTACCAAAATAC 59.189 37.037 0.00 0.00 0.00 1.89
2838 2919 7.888424 TGCGAGCATATACTACTACCAAAATA 58.112 34.615 0.00 0.00 0.00 1.40
2841 2922 5.777850 TGCGAGCATATACTACTACCAAA 57.222 39.130 0.00 0.00 0.00 3.28
2842 2923 5.709966 CATGCGAGCATATACTACTACCAA 58.290 41.667 10.48 0.00 34.91 3.67
2843 2924 4.380550 GCATGCGAGCATATACTACTACCA 60.381 45.833 10.48 0.00 34.91 3.25
2844 2925 4.106197 GCATGCGAGCATATACTACTACC 58.894 47.826 10.48 0.00 34.91 3.18
2845 2926 4.795795 CAGCATGCGAGCATATACTACTAC 59.204 45.833 13.01 0.00 34.91 2.73
2846 2927 4.700213 TCAGCATGCGAGCATATACTACTA 59.300 41.667 13.01 0.00 34.91 1.82
2848 2929 3.838120 TCAGCATGCGAGCATATACTAC 58.162 45.455 13.01 0.00 34.91 2.73
2849 2930 3.758554 TCTCAGCATGCGAGCATATACTA 59.241 43.478 25.14 10.28 34.91 1.82
2851 2932 2.951726 TCTCAGCATGCGAGCATATAC 58.048 47.619 25.14 3.81 34.91 1.47
2852 2933 3.665745 TTCTCAGCATGCGAGCATATA 57.334 42.857 25.14 11.88 34.91 0.86
2853 2934 2.538512 TTCTCAGCATGCGAGCATAT 57.461 45.000 25.14 1.56 34.91 1.78
2856 2937 0.800631 CTTTTCTCAGCATGCGAGCA 59.199 50.000 25.14 17.02 36.85 4.26
2857 2938 0.098376 CCTTTTCTCAGCATGCGAGC 59.902 55.000 25.14 0.03 34.76 5.03
2858 2939 0.731417 CCCTTTTCTCAGCATGCGAG 59.269 55.000 24.44 24.44 34.76 5.03
2859 2940 0.036732 ACCCTTTTCTCAGCATGCGA 59.963 50.000 13.01 11.75 34.76 5.10
2860 2941 0.449388 GACCCTTTTCTCAGCATGCG 59.551 55.000 13.01 7.64 34.76 4.73
2861 2942 0.449388 CGACCCTTTTCTCAGCATGC 59.551 55.000 10.51 10.51 34.76 4.06
2862 2943 1.466167 CACGACCCTTTTCTCAGCATG 59.534 52.381 0.00 0.00 37.54 4.06
2864 2945 0.468226 ACACGACCCTTTTCTCAGCA 59.532 50.000 0.00 0.00 0.00 4.41
2865 2946 2.029290 TCTACACGACCCTTTTCTCAGC 60.029 50.000 0.00 0.00 0.00 4.26
2866 2947 3.506455 TCTCTACACGACCCTTTTCTCAG 59.494 47.826 0.00 0.00 0.00 3.35
2868 2949 3.670091 CGTCTCTACACGACCCTTTTCTC 60.670 52.174 0.00 0.00 42.69 2.87
2870 2951 2.030451 ACGTCTCTACACGACCCTTTTC 60.030 50.000 0.00 0.00 42.69 2.29
2871 2952 1.959282 ACGTCTCTACACGACCCTTTT 59.041 47.619 0.00 0.00 42.69 2.27
2875 2956 1.130186 GAGAACGTCTCTACACGACCC 59.870 57.143 0.00 0.00 42.69 4.46
2885 2966 0.109039 GCTGGGTCAGAGAACGTCTC 60.109 60.000 6.85 6.85 43.70 3.36
2886 2967 0.827925 TGCTGGGTCAGAGAACGTCT 60.828 55.000 0.00 0.00 35.00 4.18
2887 2968 0.389166 CTGCTGGGTCAGAGAACGTC 60.389 60.000 0.00 0.00 36.19 4.34
2888 2969 0.827925 TCTGCTGGGTCAGAGAACGT 60.828 55.000 0.00 0.00 38.11 3.99
2889 2970 0.318441 TTCTGCTGGGTCAGAGAACG 59.682 55.000 0.00 0.00 43.23 3.95
2890 2971 1.943507 GCTTCTGCTGGGTCAGAGAAC 60.944 57.143 0.00 0.00 43.23 3.01
2891 2972 0.322975 GCTTCTGCTGGGTCAGAGAA 59.677 55.000 0.00 4.88 43.23 2.87
2892 2973 1.548357 GGCTTCTGCTGGGTCAGAGA 61.548 60.000 0.00 0.00 43.23 3.10
2893 2974 1.078567 GGCTTCTGCTGGGTCAGAG 60.079 63.158 0.00 0.00 43.23 3.35
2894 2975 1.203441 ATGGCTTCTGCTGGGTCAGA 61.203 55.000 0.00 0.00 40.99 3.27
2895 2976 0.747283 GATGGCTTCTGCTGGGTCAG 60.747 60.000 0.00 0.00 39.59 3.51
2896 2977 1.300963 GATGGCTTCTGCTGGGTCA 59.699 57.895 0.00 0.00 39.59 4.02
2897 2978 1.452833 GGATGGCTTCTGCTGGGTC 60.453 63.158 0.07 0.00 39.59 4.46
2898 2979 2.679716 GGATGGCTTCTGCTGGGT 59.320 61.111 0.07 0.00 39.59 4.51
2899 2980 2.515523 CGGATGGCTTCTGCTGGG 60.516 66.667 0.07 0.00 39.59 4.45
2904 2985 2.040544 AAACGGCGGATGGCTTCTG 61.041 57.895 13.24 4.90 42.94 3.02
2905 2986 2.040544 CAAACGGCGGATGGCTTCT 61.041 57.895 13.24 0.00 42.94 2.85
2906 2987 2.332654 ACAAACGGCGGATGGCTTC 61.333 57.895 13.24 0.00 42.94 3.86
2907 2988 2.282180 ACAAACGGCGGATGGCTT 60.282 55.556 13.24 0.00 42.94 4.35
2908 2989 3.055719 CACAAACGGCGGATGGCT 61.056 61.111 13.24 0.00 42.94 4.75
2909 2990 4.776647 GCACAAACGGCGGATGGC 62.777 66.667 13.24 11.18 42.51 4.40
2910 2991 3.326889 CTGCACAAACGGCGGATGG 62.327 63.158 13.24 0.00 40.08 3.51
2911 2992 2.176546 CTGCACAAACGGCGGATG 59.823 61.111 13.24 12.39 40.08 3.51
2912 2993 3.737172 GCTGCACAAACGGCGGAT 61.737 61.111 13.24 0.00 40.08 4.18
2966 3047 1.024271 AATACATGTGCGGATGTGCC 58.976 50.000 9.11 0.00 37.16 5.01
2971 3052 2.595124 TCGACAATACATGTGCGGAT 57.405 45.000 9.11 0.00 44.12 4.18
2973 3054 1.729517 TGTTCGACAATACATGTGCGG 59.270 47.619 9.11 0.00 44.12 5.69
2974 3055 3.152983 GTTGTTCGACAATACATGTGCG 58.847 45.455 9.11 4.70 44.12 5.34
2975 3056 3.906008 GTGTTGTTCGACAATACATGTGC 59.094 43.478 9.11 0.00 45.63 4.57
2982 3063 3.755112 TGAGGGTGTTGTTCGACAATA 57.245 42.857 4.21 0.00 40.59 1.90
2983 3064 2.631160 TGAGGGTGTTGTTCGACAAT 57.369 45.000 4.21 0.00 40.59 2.71
2984 3065 2.104111 AGATGAGGGTGTTGTTCGACAA 59.896 45.455 0.00 0.00 35.42 3.18
2985 3066 1.691976 AGATGAGGGTGTTGTTCGACA 59.308 47.619 0.00 0.00 0.00 4.35
2986 3067 2.457366 AGATGAGGGTGTTGTTCGAC 57.543 50.000 0.00 0.00 0.00 4.20
2987 3068 3.056821 CAGTAGATGAGGGTGTTGTTCGA 60.057 47.826 0.00 0.00 0.00 3.71
2988 3069 3.254060 CAGTAGATGAGGGTGTTGTTCG 58.746 50.000 0.00 0.00 0.00 3.95
2989 3070 4.246458 GACAGTAGATGAGGGTGTTGTTC 58.754 47.826 0.00 0.00 0.00 3.18
2990 3071 3.306088 CGACAGTAGATGAGGGTGTTGTT 60.306 47.826 0.00 0.00 0.00 2.83
3075 3156 3.320626 CAGTTCAGAGCTGATTTCGACA 58.679 45.455 8.57 0.00 39.64 4.35
3097 3178 3.695830 TGCTACTACACCAAAAGGAGG 57.304 47.619 0.00 0.00 0.00 4.30
3154 3238 2.304180 CCTAAGTAGATCATGCCCCAGG 59.696 54.545 0.00 0.00 0.00 4.45
3196 3280 5.880054 AACAATCTAATGTTCTTCCGGTG 57.120 39.130 0.00 0.00 39.23 4.94
3268 3356 3.754965 AGGCAGCATTTCTGTAAGTTCA 58.245 40.909 0.00 0.00 44.66 3.18
3289 3377 7.727331 CAAGTTGGCTTGGAAATAAATGAAA 57.273 32.000 0.00 0.00 46.17 2.69
3308 3396 2.283145 AGGTGCTGAGCAATCAAGTT 57.717 45.000 9.51 0.00 41.47 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.