Multiple sequence alignment - TraesCS2B01G424700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G424700 chr2B 100.000 2933 0 0 1 2933 610912391 610915323 0.000000e+00 5417
1 TraesCS2B01G424700 chr2B 87.896 347 34 7 1 346 367415874 367415535 4.550000e-108 401
2 TraesCS2B01G424700 chr2D 94.154 1300 71 4 940 2235 518605184 518606482 0.000000e+00 1975
3 TraesCS2B01G424700 chr2D 89.097 587 38 11 2233 2809 518606563 518607133 0.000000e+00 706
4 TraesCS2B01G424700 chr2D 82.721 463 25 20 507 937 506650486 506650047 7.730000e-96 361
5 TraesCS2B01G424700 chr2A 90.327 703 40 13 2240 2931 662891483 662892168 0.000000e+00 896
6 TraesCS2B01G424700 chr2A 88.667 450 33 8 499 936 283943316 283942873 1.550000e-147 532
7 TraesCS2B01G424700 chr7B 93.939 396 17 6 496 889 213900878 213900488 2.520000e-165 592
8 TraesCS2B01G424700 chr7B 90.466 472 10 5 497 936 79732498 79732030 9.050000e-165 590
9 TraesCS2B01G424700 chr7B 92.786 402 15 4 500 889 713466555 713466954 1.180000e-158 569
10 TraesCS2B01G424700 chr7B 92.593 405 15 3 497 889 247983853 247984254 4.240000e-158 568
11 TraesCS2B01G424700 chr7B 92.583 391 21 6 501 889 375206748 375206364 3.300000e-154 555
12 TraesCS2B01G424700 chr7B 88.250 400 32 6 503 889 11930217 11929820 5.730000e-127 464
13 TraesCS2B01G424700 chr7B 85.396 404 33 8 499 889 535453161 535453551 2.120000e-106 396
14 TraesCS2B01G424700 chr7A 93.484 399 12 3 501 886 49946430 49946827 5.450000e-162 580
15 TraesCS2B01G424700 chr7A 92.537 402 17 3 501 889 343649190 343648789 5.490000e-157 564
16 TraesCS2B01G424700 chr7A 85.000 460 45 10 489 936 96562432 96562879 2.070000e-121 446
17 TraesCS2B01G424700 chrUn 74.528 1484 297 52 1035 2480 178189657 178188217 3.280000e-159 571
18 TraesCS2B01G424700 chr1B 92.768 401 16 3 501 889 263324709 263325108 4.240000e-158 568
19 TraesCS2B01G424700 chr1B 88.690 336 35 3 12 346 384247805 384248138 9.790000e-110 407
20 TraesCS2B01G424700 chr1B 93.103 145 8 2 2790 2933 45205939 45205796 8.240000e-51 211
21 TraesCS2B01G424700 chr5A 92.768 401 12 4 501 886 340447372 340446974 5.490000e-157 564
22 TraesCS2B01G424700 chr5A 86.105 439 45 9 503 929 595887574 595888008 2.660000e-125 459
23 TraesCS2B01G424700 chr1A 89.507 467 16 3 502 936 384069735 384069270 7.100000e-156 560
24 TraesCS2B01G424700 chr6B 89.176 425 29 7 526 938 117855960 117855541 5.610000e-142 514
25 TraesCS2B01G424700 chr4A 89.275 345 33 3 3 345 713362002 713361660 2.090000e-116 429
26 TraesCS2B01G424700 chr4B 88.728 346 30 7 1 343 163842772 163842433 5.850000e-112 414
27 TraesCS2B01G424700 chr4B 88.439 346 36 4 1 345 379638093 379638435 5.850000e-112 414
28 TraesCS2B01G424700 chr4B 87.826 345 38 4 1 343 463240983 463241325 4.550000e-108 401
29 TraesCS2B01G424700 chr5B 88.563 341 36 3 3 343 670022606 670022943 7.570000e-111 411
30 TraesCS2B01G424700 chr5B 87.896 347 38 4 1 347 447267521 447267863 3.520000e-109 405
31 TraesCS2B01G424700 chr3D 89.362 329 31 3 16 343 609902731 609903056 7.570000e-111 411
32 TraesCS2B01G424700 chr5D 84.807 441 30 10 531 938 486260377 486260813 2.720000e-110 409
33 TraesCS2B01G424700 chr1D 84.375 448 31 12 526 940 76981696 76981255 1.270000e-108 403
34 TraesCS2B01G424700 chr7D 80.108 186 33 3 751 936 629866689 629866870 5.100000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G424700 chr2B 610912391 610915323 2932 False 5417.0 5417 100.0000 1 2933 1 chr2B.!!$F1 2932
1 TraesCS2B01G424700 chr2D 518605184 518607133 1949 False 1340.5 1975 91.6255 940 2809 2 chr2D.!!$F1 1869
2 TraesCS2B01G424700 chr2A 662891483 662892168 685 False 896.0 896 90.3270 2240 2931 1 chr2A.!!$F1 691
3 TraesCS2B01G424700 chrUn 178188217 178189657 1440 True 571.0 571 74.5280 1035 2480 1 chrUn.!!$R1 1445

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
668 669 0.035247 AATTAGTAAACGGGCCGGCA 60.035 50.0 31.78 11.85 0.0 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1963 1992 0.179 AACCCTATCGGCAGCTTCAG 59.821 55.0 0.0 0.0 33.26 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.873883 GACGACGACGGCGAGGAT 61.874 66.667 32.70 6.94 44.46 3.24
18 19 4.175489 ACGACGACGGCGAGGATG 62.175 66.667 32.70 3.96 44.46 3.51
19 20 4.907034 CGACGACGGCGAGGATGG 62.907 72.222 22.49 0.00 41.64 3.51
28 29 4.498520 CGAGGATGGCAGCGACGT 62.499 66.667 10.89 0.00 0.00 4.34
29 30 2.583593 GAGGATGGCAGCGACGTC 60.584 66.667 5.18 5.18 0.00 4.34
30 31 4.498520 AGGATGGCAGCGACGTCG 62.499 66.667 32.57 32.57 43.27 5.12
38 39 4.755614 AGCGACGTCGGCGACTTC 62.756 66.667 36.13 31.73 42.00 3.01
50 51 4.135493 GACTTCGCCGCGCTTGTC 62.135 66.667 8.21 11.71 0.00 3.18
56 57 4.135493 GCCGCGCTTGTCGACTTC 62.135 66.667 17.92 4.75 41.67 3.01
57 58 2.430921 CCGCGCTTGTCGACTTCT 60.431 61.111 17.92 0.00 41.67 2.85
58 59 2.022129 CCGCGCTTGTCGACTTCTT 61.022 57.895 17.92 0.00 41.67 2.52
59 60 1.412606 CGCGCTTGTCGACTTCTTC 59.587 57.895 17.92 2.59 41.67 2.87
68 69 3.826637 CGACTTCTTCGGCCCTTAA 57.173 52.632 0.00 0.00 44.60 1.85
69 70 2.088950 CGACTTCTTCGGCCCTTAAA 57.911 50.000 0.00 0.00 44.60 1.52
70 71 2.629051 CGACTTCTTCGGCCCTTAAAT 58.371 47.619 0.00 0.00 44.60 1.40
71 72 3.788937 CGACTTCTTCGGCCCTTAAATA 58.211 45.455 0.00 0.00 44.60 1.40
72 73 3.802685 CGACTTCTTCGGCCCTTAAATAG 59.197 47.826 0.00 0.00 44.60 1.73
73 74 4.679905 CGACTTCTTCGGCCCTTAAATAGT 60.680 45.833 0.00 0.00 44.60 2.12
74 75 5.175388 ACTTCTTCGGCCCTTAAATAGTT 57.825 39.130 0.00 0.00 0.00 2.24
75 76 4.941873 ACTTCTTCGGCCCTTAAATAGTTG 59.058 41.667 0.00 0.00 0.00 3.16
76 77 4.563140 TCTTCGGCCCTTAAATAGTTGT 57.437 40.909 0.00 0.00 0.00 3.32
77 78 5.680594 TCTTCGGCCCTTAAATAGTTGTA 57.319 39.130 0.00 0.00 0.00 2.41
78 79 5.667466 TCTTCGGCCCTTAAATAGTTGTAG 58.333 41.667 0.00 0.00 0.00 2.74
79 80 5.188359 TCTTCGGCCCTTAAATAGTTGTAGT 59.812 40.000 0.00 0.00 0.00 2.73
80 81 5.425196 TCGGCCCTTAAATAGTTGTAGTT 57.575 39.130 0.00 0.00 0.00 2.24
81 82 5.180271 TCGGCCCTTAAATAGTTGTAGTTG 58.820 41.667 0.00 0.00 0.00 3.16
82 83 4.201881 CGGCCCTTAAATAGTTGTAGTTGC 60.202 45.833 0.00 0.00 0.00 4.17
83 84 4.201881 GGCCCTTAAATAGTTGTAGTTGCG 60.202 45.833 0.00 0.00 0.00 4.85
84 85 4.201881 GCCCTTAAATAGTTGTAGTTGCGG 60.202 45.833 0.00 0.00 0.00 5.69
85 86 4.201881 CCCTTAAATAGTTGTAGTTGCGGC 60.202 45.833 0.00 0.00 0.00 6.53
86 87 4.201881 CCTTAAATAGTTGTAGTTGCGGCC 60.202 45.833 0.00 0.00 0.00 6.13
87 88 2.781681 AATAGTTGTAGTTGCGGCCT 57.218 45.000 0.00 0.00 0.00 5.19
88 89 2.781681 ATAGTTGTAGTTGCGGCCTT 57.218 45.000 0.00 0.00 0.00 4.35
89 90 2.554370 TAGTTGTAGTTGCGGCCTTT 57.446 45.000 0.00 0.00 0.00 3.11
90 91 1.687563 AGTTGTAGTTGCGGCCTTTT 58.312 45.000 0.00 0.00 0.00 2.27
91 92 2.028876 AGTTGTAGTTGCGGCCTTTTT 58.971 42.857 0.00 0.00 0.00 1.94
119 120 9.482627 AAAATAAATTTGCTACGGAATGTTGAA 57.517 25.926 0.00 0.00 0.00 2.69
120 121 9.651913 AAATAAATTTGCTACGGAATGTTGAAT 57.348 25.926 0.00 0.00 0.00 2.57
123 124 8.633075 AAATTTGCTACGGAATGTTGAATATG 57.367 30.769 0.00 0.00 0.00 1.78
124 125 6.751514 TTTGCTACGGAATGTTGAATATGT 57.248 33.333 0.00 0.00 0.00 2.29
125 126 5.984233 TGCTACGGAATGTTGAATATGTC 57.016 39.130 0.00 0.00 0.00 3.06
126 127 4.506288 TGCTACGGAATGTTGAATATGTCG 59.494 41.667 0.00 0.00 0.00 4.35
127 128 4.743151 GCTACGGAATGTTGAATATGTCGA 59.257 41.667 4.75 0.00 0.00 4.20
128 129 5.233476 GCTACGGAATGTTGAATATGTCGAA 59.767 40.000 0.00 0.00 0.00 3.71
129 130 6.073765 GCTACGGAATGTTGAATATGTCGAAT 60.074 38.462 0.00 0.00 0.00 3.34
130 131 7.115805 GCTACGGAATGTTGAATATGTCGAATA 59.884 37.037 0.00 0.00 0.00 1.75
131 132 7.962964 ACGGAATGTTGAATATGTCGAATAT 57.037 32.000 0.00 0.00 0.00 1.28
133 134 9.653287 ACGGAATGTTGAATATGTCGAATATAT 57.347 29.630 0.00 0.00 0.00 0.86
134 135 9.906111 CGGAATGTTGAATATGTCGAATATATG 57.094 33.333 4.69 0.00 0.00 1.78
138 139 9.942850 ATGTTGAATATGTCGAATATATGTCCA 57.057 29.630 4.69 2.46 0.00 4.02
139 140 9.423061 TGTTGAATATGTCGAATATATGTCCAG 57.577 33.333 4.69 0.00 0.00 3.86
140 141 9.424319 GTTGAATATGTCGAATATATGTCCAGT 57.576 33.333 4.69 0.00 0.00 4.00
141 142 9.996554 TTGAATATGTCGAATATATGTCCAGTT 57.003 29.630 4.69 0.00 0.00 3.16
142 143 9.996554 TGAATATGTCGAATATATGTCCAGTTT 57.003 29.630 4.69 0.00 0.00 2.66
144 145 5.984233 TGTCGAATATATGTCCAGTTTGC 57.016 39.130 0.00 0.00 0.00 3.68
145 146 4.814234 TGTCGAATATATGTCCAGTTTGCC 59.186 41.667 0.00 0.00 0.00 4.52
146 147 4.055360 TCGAATATATGTCCAGTTTGCCG 58.945 43.478 0.00 0.00 0.00 5.69
147 148 4.055360 CGAATATATGTCCAGTTTGCCGA 58.945 43.478 0.00 0.00 0.00 5.54
148 149 4.509970 CGAATATATGTCCAGTTTGCCGAA 59.490 41.667 0.00 0.00 0.00 4.30
149 150 5.558273 CGAATATATGTCCAGTTTGCCGAAC 60.558 44.000 0.00 0.00 38.58 3.95
151 152 1.981256 ATGTCCAGTTTGCCGAACTT 58.019 45.000 0.00 0.00 46.34 2.66
152 153 1.757682 TGTCCAGTTTGCCGAACTTT 58.242 45.000 0.00 0.00 46.34 2.66
153 154 2.920524 TGTCCAGTTTGCCGAACTTTA 58.079 42.857 0.00 0.00 46.34 1.85
154 155 2.875933 TGTCCAGTTTGCCGAACTTTAG 59.124 45.455 0.00 0.00 46.34 1.85
155 156 1.877443 TCCAGTTTGCCGAACTTTAGC 59.123 47.619 0.00 0.00 46.34 3.09
156 157 1.068541 CCAGTTTGCCGAACTTTAGCC 60.069 52.381 0.00 0.00 46.34 3.93
157 158 0.872388 AGTTTGCCGAACTTTAGCCG 59.128 50.000 0.00 0.00 46.34 5.52
158 159 0.869730 GTTTGCCGAACTTTAGCCGA 59.130 50.000 0.00 0.00 35.31 5.54
159 160 1.264826 GTTTGCCGAACTTTAGCCGAA 59.735 47.619 0.00 0.00 35.31 4.30
160 161 1.816074 TTGCCGAACTTTAGCCGAAT 58.184 45.000 0.00 0.00 0.00 3.34
161 162 2.676632 TGCCGAACTTTAGCCGAATA 57.323 45.000 0.00 0.00 0.00 1.75
162 163 2.975266 TGCCGAACTTTAGCCGAATAA 58.025 42.857 0.00 0.00 0.00 1.40
163 164 3.537580 TGCCGAACTTTAGCCGAATAAT 58.462 40.909 0.00 0.00 0.00 1.28
164 165 3.942748 TGCCGAACTTTAGCCGAATAATT 59.057 39.130 0.00 0.00 0.00 1.40
165 166 4.396790 TGCCGAACTTTAGCCGAATAATTT 59.603 37.500 0.00 0.00 0.00 1.82
166 167 4.733405 GCCGAACTTTAGCCGAATAATTTG 59.267 41.667 0.00 0.00 0.00 2.32
167 168 5.675323 GCCGAACTTTAGCCGAATAATTTGT 60.675 40.000 0.00 0.00 0.00 2.83
168 169 5.963586 CCGAACTTTAGCCGAATAATTTGTC 59.036 40.000 0.00 0.00 0.00 3.18
169 170 5.963586 CGAACTTTAGCCGAATAATTTGTCC 59.036 40.000 0.00 0.00 0.00 4.02
170 171 6.402766 CGAACTTTAGCCGAATAATTTGTCCA 60.403 38.462 0.00 0.00 0.00 4.02
171 172 6.827586 ACTTTAGCCGAATAATTTGTCCAA 57.172 33.333 0.00 0.00 0.00 3.53
172 173 7.404671 ACTTTAGCCGAATAATTTGTCCAAT 57.595 32.000 0.00 0.00 0.00 3.16
173 174 7.836842 ACTTTAGCCGAATAATTTGTCCAATT 58.163 30.769 0.00 0.00 38.69 2.32
174 175 8.311109 ACTTTAGCCGAATAATTTGTCCAATTT 58.689 29.630 0.00 0.00 36.43 1.82
175 176 8.472683 TTTAGCCGAATAATTTGTCCAATTTG 57.527 30.769 0.00 0.00 36.43 2.32
176 177 4.869861 AGCCGAATAATTTGTCCAATTTGC 59.130 37.500 0.00 0.00 36.43 3.68
177 178 4.033932 GCCGAATAATTTGTCCAATTTGCC 59.966 41.667 0.00 0.00 36.43 4.52
178 179 4.267452 CCGAATAATTTGTCCAATTTGCCG 59.733 41.667 0.00 0.00 36.43 5.69
179 180 5.098893 CGAATAATTTGTCCAATTTGCCGA 58.901 37.500 0.00 0.00 36.43 5.54
180 181 5.574830 CGAATAATTTGTCCAATTTGCCGAA 59.425 36.000 0.00 0.00 36.43 4.30
181 182 6.453659 CGAATAATTTGTCCAATTTGCCGAAC 60.454 38.462 0.00 0.00 36.43 3.95
182 183 4.335400 AATTTGTCCAATTTGCCGAACT 57.665 36.364 0.00 0.00 30.09 3.01
183 184 3.810310 TTTGTCCAATTTGCCGAACTT 57.190 38.095 0.00 0.00 0.00 2.66
184 185 3.810310 TTGTCCAATTTGCCGAACTTT 57.190 38.095 0.00 0.00 0.00 2.66
185 186 3.090952 TGTCCAATTTGCCGAACTTTG 57.909 42.857 0.00 0.00 0.00 2.77
186 187 1.792367 GTCCAATTTGCCGAACTTTGC 59.208 47.619 0.00 0.00 0.00 3.68
187 188 1.147473 CCAATTTGCCGAACTTTGCC 58.853 50.000 0.00 0.00 0.00 4.52
188 189 0.783579 CAATTTGCCGAACTTTGCCG 59.216 50.000 0.00 0.00 0.00 5.69
189 190 0.671251 AATTTGCCGAACTTTGCCGA 59.329 45.000 0.00 0.00 0.00 5.54
190 191 0.671251 ATTTGCCGAACTTTGCCGAA 59.329 45.000 0.00 0.00 0.00 4.30
191 192 0.671251 TTTGCCGAACTTTGCCGAAT 59.329 45.000 0.00 0.00 0.00 3.34
192 193 1.524848 TTGCCGAACTTTGCCGAATA 58.475 45.000 0.00 0.00 0.00 1.75
193 194 0.800012 TGCCGAACTTTGCCGAATAC 59.200 50.000 0.00 0.00 0.00 1.89
194 195 0.098200 GCCGAACTTTGCCGAATACC 59.902 55.000 0.00 0.00 0.00 2.73
195 196 0.730840 CCGAACTTTGCCGAATACCC 59.269 55.000 0.00 0.00 0.00 3.69
196 197 1.677820 CCGAACTTTGCCGAATACCCT 60.678 52.381 0.00 0.00 0.00 4.34
197 198 2.081462 CGAACTTTGCCGAATACCCTT 58.919 47.619 0.00 0.00 0.00 3.95
198 199 2.486592 CGAACTTTGCCGAATACCCTTT 59.513 45.455 0.00 0.00 0.00 3.11
199 200 3.057806 CGAACTTTGCCGAATACCCTTTT 60.058 43.478 0.00 0.00 0.00 2.27
200 201 4.557895 CGAACTTTGCCGAATACCCTTTTT 60.558 41.667 0.00 0.00 0.00 1.94
221 222 3.976468 TTAAACATAAACGGCGTCTCG 57.024 42.857 15.17 4.99 0.00 4.04
222 223 1.073177 AAACATAAACGGCGTCTCGG 58.927 50.000 15.17 6.59 0.00 4.63
223 224 0.738412 AACATAAACGGCGTCTCGGG 60.738 55.000 15.17 5.00 0.00 5.14
224 225 1.881252 CATAAACGGCGTCTCGGGG 60.881 63.158 15.17 0.00 0.00 5.73
225 226 3.085119 ATAAACGGCGTCTCGGGGG 62.085 63.158 15.17 0.00 0.00 5.40
264 265 3.948719 GGAACCCGCTCACCACCA 61.949 66.667 0.00 0.00 0.00 4.17
265 266 2.668550 GAACCCGCTCACCACCAC 60.669 66.667 0.00 0.00 0.00 4.16
266 267 3.469863 GAACCCGCTCACCACCACA 62.470 63.158 0.00 0.00 0.00 4.17
267 268 3.767630 AACCCGCTCACCACCACAC 62.768 63.158 0.00 0.00 0.00 3.82
271 272 4.250305 GCTCACCACCACACCCGT 62.250 66.667 0.00 0.00 0.00 5.28
272 273 2.508928 CTCACCACCACACCCGTT 59.491 61.111 0.00 0.00 0.00 4.44
273 274 1.153046 CTCACCACCACACCCGTTT 60.153 57.895 0.00 0.00 0.00 3.60
274 275 0.750182 CTCACCACCACACCCGTTTT 60.750 55.000 0.00 0.00 0.00 2.43
275 276 0.323542 TCACCACCACACCCGTTTTT 60.324 50.000 0.00 0.00 0.00 1.94
276 277 1.064906 TCACCACCACACCCGTTTTTA 60.065 47.619 0.00 0.00 0.00 1.52
277 278 1.335496 CACCACCACACCCGTTTTTAG 59.665 52.381 0.00 0.00 0.00 1.85
278 279 0.312729 CCACCACACCCGTTTTTAGC 59.687 55.000 0.00 0.00 0.00 3.09
279 280 0.040781 CACCACACCCGTTTTTAGCG 60.041 55.000 0.00 0.00 0.00 4.26
280 281 1.081708 CCACACCCGTTTTTAGCGC 60.082 57.895 0.00 0.00 0.00 5.92
281 282 1.081708 CACACCCGTTTTTAGCGCC 60.082 57.895 2.29 0.00 0.00 6.53
282 283 2.174835 CACCCGTTTTTAGCGCCG 59.825 61.111 2.29 0.00 0.00 6.46
283 284 3.051479 ACCCGTTTTTAGCGCCGG 61.051 61.111 12.77 12.77 40.12 6.13
284 285 4.470170 CCCGTTTTTAGCGCCGGC 62.470 66.667 19.07 19.07 39.12 6.13
304 305 4.796495 GCCCCCAGACGGCGATTT 62.796 66.667 16.62 0.00 36.47 2.17
305 306 2.045340 CCCCCAGACGGCGATTTT 60.045 61.111 16.62 0.00 0.00 1.82
306 307 1.222387 CCCCCAGACGGCGATTTTA 59.778 57.895 16.62 0.00 0.00 1.52
307 308 1.093496 CCCCCAGACGGCGATTTTAC 61.093 60.000 16.62 0.00 0.00 2.01
308 309 1.426041 CCCCAGACGGCGATTTTACG 61.426 60.000 16.62 0.00 0.00 3.18
317 318 3.474823 CGATTTTACGCGCACTCTG 57.525 52.632 5.73 0.00 0.00 3.35
318 319 0.713883 CGATTTTACGCGCACTCTGT 59.286 50.000 5.73 0.00 0.00 3.41
319 320 1.524986 CGATTTTACGCGCACTCTGTG 60.525 52.381 5.73 0.00 36.51 3.66
320 321 0.796312 ATTTTACGCGCACTCTGTGG 59.204 50.000 5.73 0.00 33.64 4.17
321 322 1.225376 TTTTACGCGCACTCTGTGGG 61.225 55.000 5.73 9.86 46.85 4.61
322 323 3.583276 TTACGCGCACTCTGTGGGG 62.583 63.158 5.73 8.57 44.80 4.96
326 327 4.641645 CGCACTCTGTGGGGCCAA 62.642 66.667 4.39 0.00 41.72 4.52
327 328 2.985847 GCACTCTGTGGGGCCAAC 60.986 66.667 3.33 3.33 33.64 3.77
328 329 2.669569 CACTCTGTGGGGCCAACG 60.670 66.667 6.56 1.40 0.00 4.10
329 330 3.953775 ACTCTGTGGGGCCAACGG 61.954 66.667 14.22 14.22 0.00 4.44
341 342 3.805267 CAACGGCTGGAGATGCTC 58.195 61.111 0.00 0.00 0.00 4.26
342 343 1.220206 CAACGGCTGGAGATGCTCT 59.780 57.895 0.00 0.00 0.00 4.09
343 344 0.461548 CAACGGCTGGAGATGCTCTA 59.538 55.000 0.00 0.00 0.00 2.43
344 345 1.134699 CAACGGCTGGAGATGCTCTAA 60.135 52.381 0.00 0.00 0.00 2.10
345 346 0.461961 ACGGCTGGAGATGCTCTAAC 59.538 55.000 0.00 0.00 0.00 2.34
346 347 0.461548 CGGCTGGAGATGCTCTAACA 59.538 55.000 0.00 0.00 0.00 2.41
347 348 1.134699 CGGCTGGAGATGCTCTAACAA 60.135 52.381 0.00 0.00 0.00 2.83
348 349 2.677902 CGGCTGGAGATGCTCTAACAAA 60.678 50.000 0.00 0.00 0.00 2.83
349 350 3.549794 GGCTGGAGATGCTCTAACAAAT 58.450 45.455 0.00 0.00 0.00 2.32
350 351 3.314635 GGCTGGAGATGCTCTAACAAATG 59.685 47.826 0.00 0.00 0.00 2.32
351 352 3.314635 GCTGGAGATGCTCTAACAAATGG 59.685 47.826 0.00 0.00 0.00 3.16
352 353 3.881688 CTGGAGATGCTCTAACAAATGGG 59.118 47.826 0.00 0.00 0.00 4.00
353 354 3.266772 TGGAGATGCTCTAACAAATGGGT 59.733 43.478 0.00 0.00 0.00 4.51
354 355 3.879892 GGAGATGCTCTAACAAATGGGTC 59.120 47.826 0.00 0.00 0.00 4.46
355 356 4.517285 GAGATGCTCTAACAAATGGGTCA 58.483 43.478 0.00 0.00 0.00 4.02
356 357 4.922206 AGATGCTCTAACAAATGGGTCAA 58.078 39.130 0.00 0.00 0.00 3.18
357 358 5.324409 AGATGCTCTAACAAATGGGTCAAA 58.676 37.500 0.00 0.00 0.00 2.69
358 359 4.846779 TGCTCTAACAAATGGGTCAAAC 57.153 40.909 0.00 0.00 0.00 2.93
359 360 3.572255 TGCTCTAACAAATGGGTCAAACC 59.428 43.478 0.00 0.00 37.60 3.27
360 361 3.365969 GCTCTAACAAATGGGTCAAACCG 60.366 47.826 0.00 0.00 39.83 4.44
361 362 3.150767 TCTAACAAATGGGTCAAACCGG 58.849 45.455 0.00 0.00 39.83 5.28
362 363 1.783071 AACAAATGGGTCAAACCGGT 58.217 45.000 0.00 0.00 39.83 5.28
363 364 1.783071 ACAAATGGGTCAAACCGGTT 58.217 45.000 15.86 15.86 39.83 4.44
364 365 2.946785 ACAAATGGGTCAAACCGGTTA 58.053 42.857 22.60 2.14 39.83 2.85
365 366 2.888414 ACAAATGGGTCAAACCGGTTAG 59.112 45.455 22.60 3.34 39.83 2.34
366 367 2.888414 CAAATGGGTCAAACCGGTTAGT 59.112 45.455 22.60 2.14 39.83 2.24
367 368 2.963599 ATGGGTCAAACCGGTTAGTT 57.036 45.000 22.60 1.22 39.83 2.24
368 369 2.732844 TGGGTCAAACCGGTTAGTTT 57.267 45.000 22.60 0.76 39.83 2.66
369 370 3.015675 TGGGTCAAACCGGTTAGTTTT 57.984 42.857 22.60 0.29 39.83 2.43
370 371 2.688958 TGGGTCAAACCGGTTAGTTTTG 59.311 45.455 22.60 15.02 39.83 2.44
371 372 2.544277 GGGTCAAACCGGTTAGTTTTGC 60.544 50.000 22.60 10.46 39.83 3.68
372 373 2.359848 GGTCAAACCGGTTAGTTTTGCT 59.640 45.455 22.60 0.00 37.87 3.91
373 374 3.549423 GGTCAAACCGGTTAGTTTTGCTC 60.549 47.826 22.60 10.59 37.87 4.26
374 375 3.314357 GTCAAACCGGTTAGTTTTGCTCT 59.686 43.478 22.60 0.00 37.87 4.09
375 376 3.949113 TCAAACCGGTTAGTTTTGCTCTT 59.051 39.130 22.60 0.00 37.87 2.85
376 377 5.007921 GTCAAACCGGTTAGTTTTGCTCTTA 59.992 40.000 22.60 0.00 37.87 2.10
377 378 5.766174 TCAAACCGGTTAGTTTTGCTCTTAT 59.234 36.000 22.60 0.00 37.87 1.73
378 379 6.935771 TCAAACCGGTTAGTTTTGCTCTTATA 59.064 34.615 22.60 0.00 37.87 0.98
379 380 6.732531 AACCGGTTAGTTTTGCTCTTATAC 57.267 37.500 20.78 0.00 0.00 1.47
380 381 5.181009 ACCGGTTAGTTTTGCTCTTATACC 58.819 41.667 0.00 0.00 0.00 2.73
381 382 5.180271 CCGGTTAGTTTTGCTCTTATACCA 58.820 41.667 0.00 0.00 0.00 3.25
382 383 5.064325 CCGGTTAGTTTTGCTCTTATACCAC 59.936 44.000 0.00 0.00 0.00 4.16
383 384 5.640357 CGGTTAGTTTTGCTCTTATACCACA 59.360 40.000 0.00 0.00 0.00 4.17
384 385 6.315393 CGGTTAGTTTTGCTCTTATACCACAT 59.685 38.462 0.00 0.00 0.00 3.21
385 386 7.148306 CGGTTAGTTTTGCTCTTATACCACATT 60.148 37.037 0.00 0.00 0.00 2.71
386 387 9.169592 GGTTAGTTTTGCTCTTATACCACATTA 57.830 33.333 0.00 0.00 0.00 1.90
390 391 9.686683 AGTTTTGCTCTTATACCACATTAATCT 57.313 29.630 0.00 0.00 0.00 2.40
394 395 8.450578 TGCTCTTATACCACATTAATCTTTGG 57.549 34.615 5.93 5.93 35.06 3.28
395 396 8.271458 TGCTCTTATACCACATTAATCTTTGGA 58.729 33.333 12.34 0.53 33.02 3.53
396 397 9.289782 GCTCTTATACCACATTAATCTTTGGAT 57.710 33.333 12.34 6.12 33.02 3.41
413 414 8.918202 TCTTTGGATTAGTGTGATTTGTTACT 57.082 30.769 0.00 0.00 0.00 2.24
414 415 8.999431 TCTTTGGATTAGTGTGATTTGTTACTC 58.001 33.333 0.00 0.00 0.00 2.59
415 416 6.961359 TGGATTAGTGTGATTTGTTACTCG 57.039 37.500 0.00 0.00 0.00 4.18
416 417 5.350365 TGGATTAGTGTGATTTGTTACTCGC 59.650 40.000 0.00 0.00 0.00 5.03
417 418 5.581085 GGATTAGTGTGATTTGTTACTCGCT 59.419 40.000 0.00 0.00 0.00 4.93
418 419 6.092259 GGATTAGTGTGATTTGTTACTCGCTT 59.908 38.462 0.00 0.00 0.00 4.68
419 420 4.732285 AGTGTGATTTGTTACTCGCTTG 57.268 40.909 0.00 0.00 0.00 4.01
420 421 4.127171 AGTGTGATTTGTTACTCGCTTGT 58.873 39.130 0.00 0.00 0.00 3.16
421 422 4.024893 AGTGTGATTTGTTACTCGCTTGTG 60.025 41.667 0.00 0.00 0.00 3.33
422 423 3.226347 GTGATTTGTTACTCGCTTGTGC 58.774 45.455 0.00 0.00 0.00 4.57
423 424 2.225491 TGATTTGTTACTCGCTTGTGCC 59.775 45.455 0.00 0.00 35.36 5.01
424 425 0.584396 TTTGTTACTCGCTTGTGCCG 59.416 50.000 0.00 0.00 35.36 5.69
425 426 0.531090 TTGTTACTCGCTTGTGCCGT 60.531 50.000 0.00 0.00 35.36 5.68
426 427 0.314618 TGTTACTCGCTTGTGCCGTA 59.685 50.000 0.00 0.00 35.36 4.02
427 428 0.989890 GTTACTCGCTTGTGCCGTAG 59.010 55.000 0.00 0.00 35.36 3.51
428 429 0.883153 TTACTCGCTTGTGCCGTAGA 59.117 50.000 0.00 0.00 35.36 2.59
429 430 0.883153 TACTCGCTTGTGCCGTAGAA 59.117 50.000 0.00 0.00 35.36 2.10
430 431 0.388649 ACTCGCTTGTGCCGTAGAAG 60.389 55.000 0.00 0.00 35.36 2.85
431 432 0.388649 CTCGCTTGTGCCGTAGAAGT 60.389 55.000 0.00 0.00 32.50 3.01
432 433 0.666274 TCGCTTGTGCCGTAGAAGTG 60.666 55.000 1.13 1.13 40.47 3.16
433 434 1.626654 CGCTTGTGCCGTAGAAGTGG 61.627 60.000 0.00 0.00 36.74 4.00
434 435 0.602905 GCTTGTGCCGTAGAAGTGGT 60.603 55.000 0.00 0.00 32.50 4.16
435 436 1.148310 CTTGTGCCGTAGAAGTGGTG 58.852 55.000 0.00 0.00 0.00 4.17
436 437 0.466543 TTGTGCCGTAGAAGTGGTGT 59.533 50.000 0.00 0.00 0.00 4.16
437 438 0.466543 TGTGCCGTAGAAGTGGTGTT 59.533 50.000 0.00 0.00 0.00 3.32
438 439 1.145803 GTGCCGTAGAAGTGGTGTTC 58.854 55.000 0.00 0.00 0.00 3.18
439 440 1.045407 TGCCGTAGAAGTGGTGTTCT 58.955 50.000 0.00 0.00 40.07 3.01
440 441 1.414919 TGCCGTAGAAGTGGTGTTCTT 59.585 47.619 0.00 0.00 37.89 2.52
441 442 2.158871 TGCCGTAGAAGTGGTGTTCTTT 60.159 45.455 0.00 0.00 37.89 2.52
442 443 2.876550 GCCGTAGAAGTGGTGTTCTTTT 59.123 45.455 0.00 0.00 37.89 2.27
443 444 4.060205 GCCGTAGAAGTGGTGTTCTTTTA 58.940 43.478 0.00 0.00 37.89 1.52
444 445 4.694037 GCCGTAGAAGTGGTGTTCTTTTAT 59.306 41.667 0.00 0.00 37.89 1.40
445 446 5.390567 GCCGTAGAAGTGGTGTTCTTTTATG 60.391 44.000 0.00 0.00 37.89 1.90
446 447 5.699458 CCGTAGAAGTGGTGTTCTTTTATGT 59.301 40.000 0.00 0.00 37.89 2.29
447 448 6.204108 CCGTAGAAGTGGTGTTCTTTTATGTT 59.796 38.462 0.00 0.00 37.89 2.71
448 449 7.385752 CCGTAGAAGTGGTGTTCTTTTATGTTA 59.614 37.037 0.00 0.00 37.89 2.41
449 450 8.932791 CGTAGAAGTGGTGTTCTTTTATGTTAT 58.067 33.333 0.00 0.00 37.89 1.89
478 479 9.780186 TTTTTACAAAAATTATGGGTTACCCTG 57.220 29.630 22.29 10.99 37.48 4.45
479 480 7.483580 TTACAAAAATTATGGGTTACCCTGG 57.516 36.000 22.29 0.00 45.70 4.45
480 481 5.656420 ACAAAAATTATGGGTTACCCTGGA 58.344 37.500 22.29 7.30 45.70 3.86
481 482 5.482526 ACAAAAATTATGGGTTACCCTGGAC 59.517 40.000 22.29 0.00 45.70 4.02
482 483 4.957606 AAATTATGGGTTACCCTGGACA 57.042 40.909 22.29 0.15 45.70 4.02
483 484 3.945640 ATTATGGGTTACCCTGGACAC 57.054 47.619 22.29 0.00 45.70 3.67
484 485 2.345782 TATGGGTTACCCTGGACACA 57.654 50.000 22.29 0.00 45.70 3.72
485 486 1.451449 ATGGGTTACCCTGGACACAA 58.549 50.000 22.29 0.00 45.70 3.33
486 487 1.223501 TGGGTTACCCTGGACACAAA 58.776 50.000 22.29 0.00 45.70 2.83
487 488 1.783979 TGGGTTACCCTGGACACAAAT 59.216 47.619 22.29 0.00 45.70 2.32
488 489 2.167662 GGGTTACCCTGGACACAAATG 58.832 52.381 14.22 0.00 41.34 2.32
489 490 2.490168 GGGTTACCCTGGACACAAATGT 60.490 50.000 14.22 0.00 41.34 2.71
490 491 4.620131 GGGTTACCCTGGACACAAATGTG 61.620 52.174 14.22 11.83 45.19 3.21
505 506 6.187125 ACAAATGTGTGCTTTGAGCTATAG 57.813 37.500 2.70 0.00 42.97 1.31
506 507 4.889832 AATGTGTGCTTTGAGCTATAGC 57.110 40.909 17.33 17.33 42.97 2.97
507 508 7.521377 ACAAATGTGTGCTTTGAGCTATAGCT 61.521 38.462 27.21 27.21 45.76 3.32
508 509 9.430294 ACAAATGTGTGCTTTGAGCTATAGCTG 62.430 40.741 31.53 17.59 44.10 4.24
517 518 2.321213 GCTATAGCTGGCCAAACGG 58.679 57.895 17.75 0.00 38.21 4.44
518 519 1.166531 GCTATAGCTGGCCAAACGGG 61.167 60.000 17.75 0.00 38.21 5.28
553 554 2.515901 GGCACGGCCCATCCTAAT 59.484 61.111 0.00 0.00 44.06 1.73
554 555 1.600916 GGCACGGCCCATCCTAATC 60.601 63.158 0.00 0.00 44.06 1.75
555 556 1.961277 GCACGGCCCATCCTAATCG 60.961 63.158 0.00 0.00 0.00 3.34
556 557 1.445942 CACGGCCCATCCTAATCGT 59.554 57.895 0.00 0.00 0.00 3.73
557 558 0.880278 CACGGCCCATCCTAATCGTG 60.880 60.000 0.00 0.00 41.09 4.35
558 559 1.961277 CGGCCCATCCTAATCGTGC 60.961 63.158 0.00 0.00 0.00 5.34
559 560 1.600916 GGCCCATCCTAATCGTGCC 60.601 63.158 0.00 0.00 0.00 5.01
560 561 1.451936 GCCCATCCTAATCGTGCCT 59.548 57.895 0.00 0.00 0.00 4.75
561 562 0.886490 GCCCATCCTAATCGTGCCTG 60.886 60.000 0.00 0.00 0.00 4.85
562 563 0.250467 CCCATCCTAATCGTGCCTGG 60.250 60.000 0.00 0.00 0.00 4.45
563 564 0.886490 CCATCCTAATCGTGCCTGGC 60.886 60.000 12.87 12.87 0.00 4.85
564 565 0.179048 CATCCTAATCGTGCCTGGCA 60.179 55.000 19.30 19.30 35.60 4.92
589 590 3.747976 GCCCGCCAAAGCACGATT 61.748 61.111 0.00 0.00 39.83 3.34
590 591 2.403378 GCCCGCCAAAGCACGATTA 61.403 57.895 0.00 0.00 39.83 1.75
591 592 1.724582 GCCCGCCAAAGCACGATTAT 61.725 55.000 0.00 0.00 39.83 1.28
592 593 0.738389 CCCGCCAAAGCACGATTATT 59.262 50.000 0.00 0.00 39.83 1.40
593 594 1.944024 CCCGCCAAAGCACGATTATTA 59.056 47.619 0.00 0.00 39.83 0.98
594 595 2.552315 CCCGCCAAAGCACGATTATTAT 59.448 45.455 0.00 0.00 39.83 1.28
595 596 3.749088 CCCGCCAAAGCACGATTATTATA 59.251 43.478 0.00 0.00 39.83 0.98
596 597 4.378046 CCCGCCAAAGCACGATTATTATAC 60.378 45.833 0.00 0.00 39.83 1.47
597 598 4.382831 CGCCAAAGCACGATTATTATACG 58.617 43.478 0.00 0.00 39.83 3.06
598 599 4.665645 CGCCAAAGCACGATTATTATACGG 60.666 45.833 0.00 0.00 39.83 4.02
599 600 4.378046 GCCAAAGCACGATTATTATACGGG 60.378 45.833 0.00 0.00 39.53 5.28
603 604 2.950433 CACGATTATTATACGGGCCGT 58.050 47.619 35.91 35.91 44.35 5.68
604 605 2.664568 CACGATTATTATACGGGCCGTG 59.335 50.000 39.80 22.32 41.39 4.94
605 606 1.657094 CGATTATTATACGGGCCGTGC 59.343 52.381 39.80 16.99 41.39 5.34
656 657 4.968370 GGCACGGCCCAATTAGTA 57.032 55.556 0.00 0.00 44.06 1.82
657 658 3.178325 GGCACGGCCCAATTAGTAA 57.822 52.632 0.00 0.00 44.06 2.24
658 659 1.465794 GGCACGGCCCAATTAGTAAA 58.534 50.000 0.00 0.00 44.06 2.01
659 660 1.133598 GGCACGGCCCAATTAGTAAAC 59.866 52.381 0.00 0.00 44.06 2.01
660 661 1.202098 GCACGGCCCAATTAGTAAACG 60.202 52.381 0.00 0.00 0.00 3.60
661 662 1.399089 CACGGCCCAATTAGTAAACGG 59.601 52.381 0.00 0.00 0.00 4.44
662 663 1.018910 CGGCCCAATTAGTAAACGGG 58.981 55.000 13.40 13.40 40.11 5.28
665 666 1.018910 CCCAATTAGTAAACGGGCCG 58.981 55.000 27.06 27.06 0.00 6.13
666 667 1.018910 CCAATTAGTAAACGGGCCGG 58.981 55.000 31.78 12.53 0.00 6.13
667 668 0.379316 CAATTAGTAAACGGGCCGGC 59.621 55.000 31.78 21.18 0.00 6.13
668 669 0.035247 AATTAGTAAACGGGCCGGCA 60.035 50.000 31.78 11.85 0.00 5.69
669 670 0.745486 ATTAGTAAACGGGCCGGCAC 60.745 55.000 31.78 26.77 0.00 5.01
683 684 2.559330 GCACGTTGGCCCGTTTAG 59.441 61.111 4.13 0.00 39.45 1.85
684 685 2.559330 CACGTTGGCCCGTTTAGC 59.441 61.111 4.13 0.00 39.45 3.09
685 686 2.111460 ACGTTGGCCCGTTTAGCA 59.889 55.556 0.00 0.00 37.96 3.49
686 687 2.255881 ACGTTGGCCCGTTTAGCAC 61.256 57.895 0.00 0.00 37.96 4.40
695 696 3.799755 GTTTAGCACGGCGGGCTG 61.800 66.667 43.72 19.36 42.62 4.85
707 708 1.770957 GCGGGCTGCATAATTTTAGC 58.229 50.000 14.74 0.00 45.45 3.09
717 718 7.844482 GCTGCATAATTTTAGCCTGTTATTTG 58.156 34.615 0.00 0.00 0.00 2.32
718 719 7.706179 GCTGCATAATTTTAGCCTGTTATTTGA 59.294 33.333 0.00 0.00 0.00 2.69
719 720 8.925161 TGCATAATTTTAGCCTGTTATTTGAC 57.075 30.769 0.00 0.00 0.00 3.18
720 721 7.700234 TGCATAATTTTAGCCTGTTATTTGACG 59.300 33.333 0.00 0.00 0.00 4.35
721 722 7.305993 GCATAATTTTAGCCTGTTATTTGACGC 60.306 37.037 0.00 0.00 0.00 5.19
722 723 5.637006 ATTTTAGCCTGTTATTTGACGCA 57.363 34.783 0.00 0.00 0.00 5.24
723 724 4.413495 TTTAGCCTGTTATTTGACGCAC 57.587 40.909 0.00 0.00 0.00 5.34
724 725 2.185004 AGCCTGTTATTTGACGCACT 57.815 45.000 0.00 0.00 0.00 4.40
725 726 3.328382 AGCCTGTTATTTGACGCACTA 57.672 42.857 0.00 0.00 0.00 2.74
726 727 3.670625 AGCCTGTTATTTGACGCACTAA 58.329 40.909 0.00 0.00 0.00 2.24
727 728 3.684788 AGCCTGTTATTTGACGCACTAAG 59.315 43.478 0.00 0.00 0.00 2.18
728 729 3.727970 GCCTGTTATTTGACGCACTAAGC 60.728 47.826 0.00 0.00 40.87 3.09
757 758 9.825109 TTTTTAGCCTATTTTTATATGTTGGGC 57.175 29.630 0.00 0.00 37.57 5.36
758 759 7.533289 TTAGCCTATTTTTATATGTTGGGCC 57.467 36.000 0.00 0.00 37.98 5.80
759 760 5.463154 AGCCTATTTTTATATGTTGGGCCA 58.537 37.500 0.00 0.00 37.98 5.36
760 761 6.084060 AGCCTATTTTTATATGTTGGGCCAT 58.916 36.000 7.26 0.00 37.98 4.40
761 762 7.245292 AGCCTATTTTTATATGTTGGGCCATA 58.755 34.615 7.26 0.00 37.98 2.74
762 763 7.900784 AGCCTATTTTTATATGTTGGGCCATAT 59.099 33.333 7.26 8.12 40.32 1.78
763 764 9.196139 GCCTATTTTTATATGTTGGGCCATATA 57.804 33.333 7.26 10.29 38.60 0.86
803 804 8.825064 AATAAAAATAAAACGTAATCGGGTCG 57.175 30.769 0.00 0.00 41.85 4.79
804 805 5.861222 AAAATAAAACGTAATCGGGTCGT 57.139 34.783 0.00 0.00 41.85 4.34
805 806 4.845621 AATAAAACGTAATCGGGTCGTG 57.154 40.909 0.00 0.00 41.85 4.35
806 807 0.792031 AAAACGTAATCGGGTCGTGC 59.208 50.000 0.00 0.00 41.85 5.34
807 808 1.015607 AAACGTAATCGGGTCGTGCC 61.016 55.000 0.00 0.00 41.85 5.01
808 809 2.952783 CGTAATCGGGTCGTGCCG 60.953 66.667 0.00 0.00 38.44 5.69
809 810 2.182537 GTAATCGGGTCGTGCCGT 59.817 61.111 0.00 0.00 38.44 5.68
810 811 2.162754 GTAATCGGGTCGTGCCGTG 61.163 63.158 0.00 0.00 38.44 4.94
811 812 3.993376 TAATCGGGTCGTGCCGTGC 62.993 63.158 0.00 0.00 38.44 5.34
834 835 4.880537 CGCGTGCCCAGCCTCTAG 62.881 72.222 0.00 0.00 0.00 2.43
835 836 4.537433 GCGTGCCCAGCCTCTAGG 62.537 72.222 0.00 0.00 38.53 3.02
883 884 3.784412 CGTTTAGCCCGTGCCGTG 61.784 66.667 0.00 0.00 38.69 4.94
884 885 4.097863 GTTTAGCCCGTGCCGTGC 62.098 66.667 0.00 0.00 38.69 5.34
937 938 2.664402 CCCATTTGGCCAGCTATACT 57.336 50.000 5.11 0.00 0.00 2.12
938 939 2.949447 CCCATTTGGCCAGCTATACTT 58.051 47.619 5.11 0.00 0.00 2.24
944 945 1.134098 TGGCCAGCTATACTTTGAGCC 60.134 52.381 0.00 0.00 39.65 4.70
978 980 1.301716 GAGAAAGCTCCCACGCACA 60.302 57.895 0.00 0.00 35.01 4.57
1008 1010 3.149648 GCCACCACCATGCCCATC 61.150 66.667 0.00 0.00 0.00 3.51
1010 1012 3.520862 CACCACCATGCCCATCGC 61.521 66.667 0.00 0.00 38.31 4.58
1015 1017 4.528039 CCATGCCCATCGCCCCTT 62.528 66.667 0.00 0.00 36.24 3.95
1063 1065 1.150081 CTCCTCCACATCCATGCCC 59.850 63.158 0.00 0.00 0.00 5.36
1116 1118 3.739613 GGCCGGGGGAGGAACAAT 61.740 66.667 2.18 0.00 0.00 2.71
1127 1129 4.902448 GGGGAGGAACAATGAGATACTACT 59.098 45.833 0.00 0.00 0.00 2.57
1191 1193 1.253100 ACCTGTACCGCAAAAATGGG 58.747 50.000 0.00 0.00 0.00 4.00
1314 1316 1.141234 CTTCTTCGTCTACCGGGCC 59.859 63.158 6.32 0.00 37.11 5.80
1374 1376 0.175760 CATGTTCCGTCGACAGGGAT 59.824 55.000 17.16 8.13 36.43 3.85
1522 1524 5.641209 AGAAAAGATCTGATTGTTGAGTCGG 59.359 40.000 0.00 0.00 36.88 4.79
1560 1562 1.906105 TTGATACCCCCGTCAGCACC 61.906 60.000 0.00 0.00 0.00 5.01
1607 1609 0.037326 TCCACCGTGATCACTCTTGC 60.037 55.000 22.95 0.00 0.00 4.01
1612 1614 1.690283 CGTGATCACTCTTGCAGGCG 61.690 60.000 22.95 2.54 0.00 5.52
1620 1622 2.202518 CTTGCAGGCGCCATTTCG 60.203 61.111 31.54 12.32 37.32 3.46
1665 1667 1.070821 TTTTCTGCGACATGCTCTCG 58.929 50.000 0.00 0.00 46.63 4.04
1711 1740 1.002990 CTGCCACTGCCACAGATCA 60.003 57.895 0.78 0.00 35.18 2.92
1712 1741 1.302752 TGCCACTGCCACAGATCAC 60.303 57.895 0.78 0.00 35.18 3.06
1785 1814 2.612972 GCTCGTTGAGGTGGATTCTGAA 60.613 50.000 0.00 0.00 0.00 3.02
1802 1831 1.828595 TGAAATCGTTGATCTCCCGGA 59.171 47.619 0.73 0.00 0.00 5.14
1814 1843 0.608130 CTCCCGGACACTTGTGATGA 59.392 55.000 0.73 0.00 0.00 2.92
1828 1857 0.037590 TGATGAAGAAACCGGGTGGG 59.962 55.000 6.32 0.00 40.75 4.61
1912 1941 3.312421 GCGTAATTCTTATGCTGCTTGGA 59.688 43.478 0.00 0.00 43.22 3.53
1930 1959 1.021968 GAACAAGGTGACCACGCTTT 58.978 50.000 3.63 0.00 0.00 3.51
1963 1992 1.686110 ATCCTCGGTGACCACTCCC 60.686 63.158 1.11 0.00 0.00 4.30
2024 2053 2.040813 ACCCAGCTATTAGCATGGATGG 59.959 50.000 24.17 18.64 44.94 3.51
2110 2139 6.483640 GGTTCTTGCTATTGATACGAGGAATT 59.516 38.462 0.00 0.00 0.00 2.17
2111 2140 7.656137 GGTTCTTGCTATTGATACGAGGAATTA 59.344 37.037 0.00 0.00 0.00 1.40
2122 2151 3.074412 ACGAGGAATTACAAGGTGCAAG 58.926 45.455 0.00 0.00 0.00 4.01
2147 2176 2.476199 AGCTTACTCTGGCCATCTTCT 58.524 47.619 5.51 0.00 0.00 2.85
2150 2179 3.620966 GCTTACTCTGGCCATCTTCTTGT 60.621 47.826 5.51 0.22 0.00 3.16
2212 2244 6.491383 AGTATCTCCAAGTAGTGTACTCCAA 58.509 40.000 0.00 0.00 38.26 3.53
2267 2382 9.499479 CCTGCTACTGACTAATTGATTTCATAT 57.501 33.333 0.00 0.00 0.00 1.78
2298 2414 4.739716 CGTTCACCATTTCTTTTGGAACAG 59.260 41.667 0.00 0.00 42.39 3.16
2308 2424 8.567948 CATTTCTTTTGGAACAGCTAGTAAGAA 58.432 33.333 0.00 0.00 42.39 2.52
2309 2425 8.514330 TTTCTTTTGGAACAGCTAGTAAGAAA 57.486 30.769 13.76 13.76 42.39 2.52
2310 2426 7.492352 TCTTTTGGAACAGCTAGTAAGAAAC 57.508 36.000 0.00 0.00 42.39 2.78
2311 2427 7.280356 TCTTTTGGAACAGCTAGTAAGAAACT 58.720 34.615 0.00 0.00 42.39 2.66
2312 2428 8.426489 TCTTTTGGAACAGCTAGTAAGAAACTA 58.574 33.333 0.00 0.00 42.39 2.24
2370 2491 8.792830 TGGATCTTTTTATATGGCTATGCTAC 57.207 34.615 0.00 0.00 0.00 3.58
2394 2516 5.220453 CGCATTTCAGACTTTTGCTTGTTTT 60.220 36.000 0.00 0.00 0.00 2.43
2405 2528 7.575365 ACTTTTGCTTGTTTTTCTCTTGTTTG 58.425 30.769 0.00 0.00 0.00 2.93
2408 2531 4.183865 GCTTGTTTTTCTCTTGTTTGGCT 58.816 39.130 0.00 0.00 0.00 4.75
2409 2532 4.033243 GCTTGTTTTTCTCTTGTTTGGCTG 59.967 41.667 0.00 0.00 0.00 4.85
2412 2535 4.219507 TGTTTTTCTCTTGTTTGGCTGACA 59.780 37.500 0.00 0.00 0.00 3.58
2425 2548 7.334858 TGTTTGGCTGACAATGATATACTGTA 58.665 34.615 0.00 0.00 39.21 2.74
2447 2573 9.821662 CTGTATGCAAGTATGTGAATATGAATG 57.178 33.333 0.00 0.00 0.00 2.67
2487 2613 3.749665 AGCTGCTCAGATGATCCTAAC 57.250 47.619 0.00 0.00 0.00 2.34
2499 2625 9.753674 TCAGATGATCCTAACCAAATTAGTTTT 57.246 29.630 0.00 0.00 39.01 2.43
2525 2651 6.620678 TCTTTGTTTGTTCTGTTCCTTCAAG 58.379 36.000 0.00 0.00 0.00 3.02
2526 2652 4.370364 TGTTTGTTCTGTTCCTTCAAGC 57.630 40.909 0.00 0.00 0.00 4.01
2527 2653 3.761218 TGTTTGTTCTGTTCCTTCAAGCA 59.239 39.130 0.00 0.00 0.00 3.91
2528 2654 4.402155 TGTTTGTTCTGTTCCTTCAAGCAT 59.598 37.500 0.00 0.00 0.00 3.79
2529 2655 5.105392 TGTTTGTTCTGTTCCTTCAAGCATT 60.105 36.000 0.00 0.00 0.00 3.56
2530 2656 5.596836 TTGTTCTGTTCCTTCAAGCATTT 57.403 34.783 0.00 0.00 0.00 2.32
2531 2657 6.707440 TTGTTCTGTTCCTTCAAGCATTTA 57.293 33.333 0.00 0.00 0.00 1.40
2532 2658 6.707440 TGTTCTGTTCCTTCAAGCATTTAA 57.293 33.333 0.00 0.00 0.00 1.52
2533 2659 6.503524 TGTTCTGTTCCTTCAAGCATTTAAC 58.496 36.000 0.00 0.00 0.00 2.01
2542 2668 5.105997 CCTTCAAGCATTTAACCTCCAAGAG 60.106 44.000 0.00 0.00 0.00 2.85
2602 2728 2.283145 AGGTGCTGAGCAATCAAGTT 57.717 45.000 9.51 0.00 41.47 2.66
2642 2768 3.754965 AGGCAGCATTTCTGTAAGTTCA 58.245 40.909 0.00 0.00 44.66 3.18
2714 2844 5.880054 AACAATCTAATGTTCTTCCGGTG 57.120 39.130 0.00 0.00 39.23 4.94
2756 2886 2.304180 CCTAAGTAGATCATGCCCCAGG 59.696 54.545 0.00 0.00 0.00 4.45
2813 2946 3.695830 TGCTACTACACCAAAAGGAGG 57.304 47.619 0.00 0.00 0.00 4.30
2835 2968 3.320626 CAGTTCAGAGCTGATTTCGACA 58.679 45.455 8.57 0.00 39.64 4.35
2920 3053 3.306088 CGACAGTAGATGAGGGTGTTGTT 60.306 47.826 0.00 0.00 0.00 2.83
2926 3059 2.104111 AGATGAGGGTGTTGTTCGACAA 59.896 45.455 0.00 0.00 35.42 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.873883 ATCCTCGCCGTCGTCGTC 61.874 66.667 0.71 0.00 36.96 4.20
1 2 4.175489 CATCCTCGCCGTCGTCGT 62.175 66.667 0.71 0.00 36.96 4.34
2 3 4.907034 CCATCCTCGCCGTCGTCG 62.907 72.222 0.00 0.00 36.96 5.12
11 12 4.498520 ACGTCGCTGCCATCCTCG 62.499 66.667 0.00 0.00 0.00 4.63
12 13 2.583593 GACGTCGCTGCCATCCTC 60.584 66.667 0.00 0.00 0.00 3.71
13 14 4.498520 CGACGTCGCTGCCATCCT 62.499 66.667 26.59 0.00 0.00 3.24
21 22 4.755614 GAAGTCGCCGACGTCGCT 62.756 66.667 31.73 20.09 41.18 4.93
33 34 4.135493 GACAAGCGCGGCGAAGTC 62.135 66.667 28.54 23.47 0.00 3.01
39 40 4.135493 GAAGTCGACAAGCGCGGC 62.135 66.667 19.50 0.00 40.61 6.53
40 41 1.945776 GAAGAAGTCGACAAGCGCGG 61.946 60.000 19.50 0.00 40.61 6.46
41 42 1.412606 GAAGAAGTCGACAAGCGCG 59.587 57.895 19.50 0.00 40.61 6.86
51 52 4.767478 ACTATTTAAGGGCCGAAGAAGTC 58.233 43.478 0.00 0.00 0.00 3.01
52 53 4.838904 ACTATTTAAGGGCCGAAGAAGT 57.161 40.909 0.00 1.71 0.00 3.01
53 54 4.941873 ACAACTATTTAAGGGCCGAAGAAG 59.058 41.667 0.00 1.10 0.00 2.85
54 55 4.913784 ACAACTATTTAAGGGCCGAAGAA 58.086 39.130 0.00 0.00 0.00 2.52
55 56 4.563140 ACAACTATTTAAGGGCCGAAGA 57.437 40.909 0.00 0.00 0.00 2.87
56 57 5.425630 ACTACAACTATTTAAGGGCCGAAG 58.574 41.667 0.00 0.00 0.00 3.79
57 58 5.425196 ACTACAACTATTTAAGGGCCGAA 57.575 39.130 0.00 0.00 0.00 4.30
58 59 5.180271 CAACTACAACTATTTAAGGGCCGA 58.820 41.667 0.00 0.00 0.00 5.54
59 60 4.201881 GCAACTACAACTATTTAAGGGCCG 60.202 45.833 0.00 0.00 0.00 6.13
60 61 4.201881 CGCAACTACAACTATTTAAGGGCC 60.202 45.833 0.00 0.00 0.00 5.80
61 62 4.201881 CCGCAACTACAACTATTTAAGGGC 60.202 45.833 0.00 0.00 0.00 5.19
62 63 4.201881 GCCGCAACTACAACTATTTAAGGG 60.202 45.833 0.00 0.00 0.00 3.95
63 64 4.201881 GGCCGCAACTACAACTATTTAAGG 60.202 45.833 0.00 0.00 0.00 2.69
64 65 4.634443 AGGCCGCAACTACAACTATTTAAG 59.366 41.667 0.00 0.00 0.00 1.85
65 66 4.581868 AGGCCGCAACTACAACTATTTAA 58.418 39.130 0.00 0.00 0.00 1.52
66 67 4.210724 AGGCCGCAACTACAACTATTTA 57.789 40.909 0.00 0.00 0.00 1.40
67 68 3.067684 AGGCCGCAACTACAACTATTT 57.932 42.857 0.00 0.00 0.00 1.40
68 69 2.781681 AGGCCGCAACTACAACTATT 57.218 45.000 0.00 0.00 0.00 1.73
69 70 2.781681 AAGGCCGCAACTACAACTAT 57.218 45.000 0.00 0.00 0.00 2.12
70 71 2.554370 AAAGGCCGCAACTACAACTA 57.446 45.000 0.00 0.00 0.00 2.24
71 72 1.687563 AAAAGGCCGCAACTACAACT 58.312 45.000 0.00 0.00 0.00 3.16
72 73 2.502213 AAAAAGGCCGCAACTACAAC 57.498 45.000 0.00 0.00 0.00 3.32
93 94 9.482627 TTCAACATTCCGTAGCAAATTTATTTT 57.517 25.926 0.00 0.00 0.00 1.82
94 95 9.651913 ATTCAACATTCCGTAGCAAATTTATTT 57.348 25.926 0.00 0.00 0.00 1.40
97 98 9.729023 CATATTCAACATTCCGTAGCAAATTTA 57.271 29.630 0.00 0.00 0.00 1.40
98 99 8.250332 ACATATTCAACATTCCGTAGCAAATTT 58.750 29.630 0.00 0.00 0.00 1.82
99 100 7.771183 ACATATTCAACATTCCGTAGCAAATT 58.229 30.769 0.00 0.00 0.00 1.82
100 101 7.333528 ACATATTCAACATTCCGTAGCAAAT 57.666 32.000 0.00 0.00 0.00 2.32
101 102 6.456315 CGACATATTCAACATTCCGTAGCAAA 60.456 38.462 0.00 0.00 0.00 3.68
102 103 5.006261 CGACATATTCAACATTCCGTAGCAA 59.994 40.000 0.00 0.00 0.00 3.91
103 104 4.506288 CGACATATTCAACATTCCGTAGCA 59.494 41.667 0.00 0.00 0.00 3.49
104 105 4.743151 TCGACATATTCAACATTCCGTAGC 59.257 41.667 0.00 0.00 0.00 3.58
105 106 6.822073 TTCGACATATTCAACATTCCGTAG 57.178 37.500 0.00 0.00 0.00 3.51
107 108 7.962964 ATATTCGACATATTCAACATTCCGT 57.037 32.000 0.00 0.00 0.00 4.69
108 109 9.906111 CATATATTCGACATATTCAACATTCCG 57.094 33.333 5.73 0.00 0.00 4.30
112 113 9.942850 TGGACATATATTCGACATATTCAACAT 57.057 29.630 5.73 0.00 0.00 2.71
113 114 9.423061 CTGGACATATATTCGACATATTCAACA 57.577 33.333 5.73 0.00 0.00 3.33
114 115 9.424319 ACTGGACATATATTCGACATATTCAAC 57.576 33.333 5.73 0.00 0.00 3.18
115 116 9.996554 AACTGGACATATATTCGACATATTCAA 57.003 29.630 5.73 0.00 0.00 2.69
116 117 9.996554 AAACTGGACATATATTCGACATATTCA 57.003 29.630 5.73 1.95 0.00 2.57
118 119 8.721478 GCAAACTGGACATATATTCGACATATT 58.279 33.333 5.73 0.00 0.00 1.28
119 120 7.334421 GGCAAACTGGACATATATTCGACATAT 59.666 37.037 0.00 0.00 0.00 1.78
120 121 6.649141 GGCAAACTGGACATATATTCGACATA 59.351 38.462 0.00 0.00 0.00 2.29
121 122 5.470098 GGCAAACTGGACATATATTCGACAT 59.530 40.000 0.00 0.00 0.00 3.06
122 123 4.814234 GGCAAACTGGACATATATTCGACA 59.186 41.667 0.00 0.00 0.00 4.35
123 124 4.084537 CGGCAAACTGGACATATATTCGAC 60.085 45.833 0.00 0.00 0.00 4.20
124 125 4.055360 CGGCAAACTGGACATATATTCGA 58.945 43.478 0.00 0.00 0.00 3.71
125 126 4.055360 TCGGCAAACTGGACATATATTCG 58.945 43.478 0.00 0.00 0.00 3.34
126 127 5.527582 AGTTCGGCAAACTGGACATATATTC 59.472 40.000 3.17 0.00 46.61 1.75
127 128 5.437060 AGTTCGGCAAACTGGACATATATT 58.563 37.500 3.17 0.00 46.61 1.28
128 129 5.036117 AGTTCGGCAAACTGGACATATAT 57.964 39.130 3.17 0.00 46.61 0.86
129 130 4.481368 AGTTCGGCAAACTGGACATATA 57.519 40.909 3.17 0.00 46.61 0.86
130 131 3.350219 AGTTCGGCAAACTGGACATAT 57.650 42.857 3.17 0.00 46.61 1.78
131 132 2.851263 AGTTCGGCAAACTGGACATA 57.149 45.000 3.17 0.00 46.61 2.29
132 133 3.725754 AGTTCGGCAAACTGGACAT 57.274 47.368 3.17 0.00 46.61 3.06
139 140 0.869730 TCGGCTAAAGTTCGGCAAAC 59.130 50.000 3.12 0.00 38.21 2.93
140 141 1.595466 TTCGGCTAAAGTTCGGCAAA 58.405 45.000 3.12 0.00 0.00 3.68
141 142 1.816074 ATTCGGCTAAAGTTCGGCAA 58.184 45.000 3.12 0.00 0.00 4.52
142 143 2.676632 TATTCGGCTAAAGTTCGGCA 57.323 45.000 3.12 0.00 0.00 5.69
143 144 4.547406 AATTATTCGGCTAAAGTTCGGC 57.453 40.909 0.00 0.00 0.00 5.54
144 145 5.875930 ACAAATTATTCGGCTAAAGTTCGG 58.124 37.500 0.00 0.00 0.00 4.30
145 146 5.963586 GGACAAATTATTCGGCTAAAGTTCG 59.036 40.000 0.00 0.00 0.00 3.95
146 147 6.848451 TGGACAAATTATTCGGCTAAAGTTC 58.152 36.000 0.00 0.00 0.00 3.01
147 148 6.827586 TGGACAAATTATTCGGCTAAAGTT 57.172 33.333 0.00 0.00 0.00 2.66
148 149 6.827586 TTGGACAAATTATTCGGCTAAAGT 57.172 33.333 0.00 0.00 0.00 2.66
149 150 8.594687 CAAATTGGACAAATTATTCGGCTAAAG 58.405 33.333 0.00 0.00 37.51 1.85
150 151 7.064016 GCAAATTGGACAAATTATTCGGCTAAA 59.936 33.333 0.00 0.00 37.51 1.85
151 152 6.533367 GCAAATTGGACAAATTATTCGGCTAA 59.467 34.615 0.00 0.00 37.51 3.09
152 153 6.039616 GCAAATTGGACAAATTATTCGGCTA 58.960 36.000 0.00 0.00 37.51 3.93
153 154 4.869861 GCAAATTGGACAAATTATTCGGCT 59.130 37.500 0.00 0.00 37.51 5.52
154 155 4.033932 GGCAAATTGGACAAATTATTCGGC 59.966 41.667 0.00 0.00 37.51 5.54
155 156 4.267452 CGGCAAATTGGACAAATTATTCGG 59.733 41.667 0.00 0.00 37.51 4.30
156 157 5.098893 TCGGCAAATTGGACAAATTATTCG 58.901 37.500 0.00 0.00 37.51 3.34
157 158 6.589907 AGTTCGGCAAATTGGACAAATTATTC 59.410 34.615 0.00 0.00 37.51 1.75
158 159 6.463360 AGTTCGGCAAATTGGACAAATTATT 58.537 32.000 0.00 0.00 37.51 1.40
159 160 6.036577 AGTTCGGCAAATTGGACAAATTAT 57.963 33.333 0.00 0.00 37.51 1.28
160 161 5.461032 AGTTCGGCAAATTGGACAAATTA 57.539 34.783 0.00 0.00 37.51 1.40
161 162 4.335400 AGTTCGGCAAATTGGACAAATT 57.665 36.364 0.00 0.00 40.32 1.82
162 163 4.335400 AAGTTCGGCAAATTGGACAAAT 57.665 36.364 0.00 0.00 0.00 2.32
163 164 3.810310 AAGTTCGGCAAATTGGACAAA 57.190 38.095 0.00 0.00 0.00 2.83
164 165 3.452474 CAAAGTTCGGCAAATTGGACAA 58.548 40.909 0.00 0.00 0.00 3.18
165 166 2.801342 GCAAAGTTCGGCAAATTGGACA 60.801 45.455 0.00 0.00 0.00 4.02
166 167 1.792367 GCAAAGTTCGGCAAATTGGAC 59.208 47.619 0.00 0.00 0.00 4.02
167 168 1.270041 GGCAAAGTTCGGCAAATTGGA 60.270 47.619 0.00 0.00 0.00 3.53
168 169 1.147473 GGCAAAGTTCGGCAAATTGG 58.853 50.000 0.00 0.00 0.00 3.16
169 170 0.783579 CGGCAAAGTTCGGCAAATTG 59.216 50.000 2.40 0.00 0.00 2.32
170 171 0.671251 TCGGCAAAGTTCGGCAAATT 59.329 45.000 2.40 0.00 0.00 1.82
171 172 0.671251 TTCGGCAAAGTTCGGCAAAT 59.329 45.000 2.40 0.00 0.00 2.32
172 173 0.671251 ATTCGGCAAAGTTCGGCAAA 59.329 45.000 2.40 0.00 0.00 3.68
173 174 1.198178 GTATTCGGCAAAGTTCGGCAA 59.802 47.619 2.40 0.00 0.00 4.52
174 175 0.800012 GTATTCGGCAAAGTTCGGCA 59.200 50.000 2.40 0.00 0.00 5.69
175 176 0.098200 GGTATTCGGCAAAGTTCGGC 59.902 55.000 0.00 0.00 0.00 5.54
176 177 0.730840 GGGTATTCGGCAAAGTTCGG 59.269 55.000 0.00 0.00 0.00 4.30
177 178 1.734163 AGGGTATTCGGCAAAGTTCG 58.266 50.000 0.00 0.00 0.00 3.95
178 179 4.514781 AAAAGGGTATTCGGCAAAGTTC 57.485 40.909 0.00 0.00 0.00 3.01
179 180 4.948341 AAAAAGGGTATTCGGCAAAGTT 57.052 36.364 0.00 0.00 0.00 2.66
198 199 5.138788 CGAGACGCCGTTTATGTTTAAAAA 58.861 37.500 0.00 0.00 0.00 1.94
199 200 4.377226 CCGAGACGCCGTTTATGTTTAAAA 60.377 41.667 0.00 0.00 0.00 1.52
200 201 3.123284 CCGAGACGCCGTTTATGTTTAAA 59.877 43.478 0.00 0.00 0.00 1.52
201 202 2.667481 CCGAGACGCCGTTTATGTTTAA 59.333 45.455 0.00 0.00 0.00 1.52
202 203 2.261345 CCGAGACGCCGTTTATGTTTA 58.739 47.619 0.00 0.00 0.00 2.01
203 204 1.073177 CCGAGACGCCGTTTATGTTT 58.927 50.000 0.00 0.00 0.00 2.83
204 205 0.738412 CCCGAGACGCCGTTTATGTT 60.738 55.000 0.00 0.00 0.00 2.71
205 206 1.153706 CCCGAGACGCCGTTTATGT 60.154 57.895 0.00 0.00 0.00 2.29
206 207 1.881252 CCCCGAGACGCCGTTTATG 60.881 63.158 0.00 0.00 0.00 1.90
207 208 2.497770 CCCCGAGACGCCGTTTAT 59.502 61.111 0.00 0.00 0.00 1.40
208 209 3.762247 CCCCCGAGACGCCGTTTA 61.762 66.667 0.00 0.00 0.00 2.01
244 245 3.636231 TGGTGAGCGGGTTCCCAG 61.636 66.667 8.70 2.48 0.00 4.45
245 246 3.948719 GTGGTGAGCGGGTTCCCA 61.949 66.667 8.70 0.00 0.00 4.37
246 247 4.717313 GGTGGTGAGCGGGTTCCC 62.717 72.222 0.00 0.00 0.00 3.97
247 248 3.948719 TGGTGGTGAGCGGGTTCC 61.949 66.667 0.00 0.00 0.00 3.62
248 249 2.668550 GTGGTGGTGAGCGGGTTC 60.669 66.667 0.00 0.00 0.00 3.62
249 250 3.484806 TGTGGTGGTGAGCGGGTT 61.485 61.111 0.00 0.00 0.00 4.11
250 251 4.250305 GTGTGGTGGTGAGCGGGT 62.250 66.667 0.00 0.00 0.00 5.28
254 255 3.767630 AACGGGTGTGGTGGTGAGC 62.768 63.158 0.00 0.00 0.00 4.26
255 256 0.750182 AAAACGGGTGTGGTGGTGAG 60.750 55.000 0.00 0.00 0.00 3.51
256 257 0.323542 AAAAACGGGTGTGGTGGTGA 60.324 50.000 0.00 0.00 0.00 4.02
257 258 1.335496 CTAAAAACGGGTGTGGTGGTG 59.665 52.381 0.00 0.00 0.00 4.17
258 259 1.682740 CTAAAAACGGGTGTGGTGGT 58.317 50.000 0.00 0.00 0.00 4.16
259 260 0.312729 GCTAAAAACGGGTGTGGTGG 59.687 55.000 0.00 0.00 0.00 4.61
260 261 0.040781 CGCTAAAAACGGGTGTGGTG 60.041 55.000 0.00 0.00 0.00 4.17
261 262 1.788067 GCGCTAAAAACGGGTGTGGT 61.788 55.000 0.00 0.00 0.00 4.16
262 263 1.081708 GCGCTAAAAACGGGTGTGG 60.082 57.895 0.00 0.00 0.00 4.17
263 264 1.081708 GGCGCTAAAAACGGGTGTG 60.082 57.895 7.64 0.00 0.00 3.82
264 265 2.609759 CGGCGCTAAAAACGGGTGT 61.610 57.895 7.64 0.00 0.00 4.16
265 266 2.174835 CGGCGCTAAAAACGGGTG 59.825 61.111 7.64 0.00 0.00 4.61
266 267 3.051479 CCGGCGCTAAAAACGGGT 61.051 61.111 7.64 0.00 42.48 5.28
267 268 4.470170 GCCGGCGCTAAAAACGGG 62.470 66.667 12.58 4.61 46.04 5.28
268 269 3.428282 AGCCGGCGCTAAAAACGG 61.428 61.111 23.20 15.00 46.08 4.44
290 291 2.003672 CGTAAAATCGCCGTCTGGG 58.996 57.895 0.00 0.00 39.58 4.45
299 300 0.713883 ACAGAGTGCGCGTAAAATCG 59.286 50.000 8.43 2.74 0.00 3.34
300 301 1.201921 CCACAGAGTGCGCGTAAAATC 60.202 52.381 8.43 2.75 31.34 2.17
301 302 0.796312 CCACAGAGTGCGCGTAAAAT 59.204 50.000 8.43 0.00 31.34 1.82
302 303 1.225376 CCCACAGAGTGCGCGTAAAA 61.225 55.000 8.43 0.00 31.34 1.52
303 304 1.666553 CCCACAGAGTGCGCGTAAA 60.667 57.895 8.43 0.00 31.34 2.01
304 305 2.048597 CCCACAGAGTGCGCGTAA 60.049 61.111 8.43 0.00 31.34 3.18
305 306 4.063967 CCCCACAGAGTGCGCGTA 62.064 66.667 8.43 0.00 31.34 4.42
309 310 4.641645 TTGGCCCCACAGAGTGCG 62.642 66.667 0.00 0.00 31.34 5.34
310 311 2.985847 GTTGGCCCCACAGAGTGC 60.986 66.667 0.00 0.00 31.34 4.40
311 312 2.669569 CGTTGGCCCCACAGAGTG 60.670 66.667 0.00 0.00 0.00 3.51
312 313 3.953775 CCGTTGGCCCCACAGAGT 61.954 66.667 0.00 0.00 0.00 3.24
324 325 3.805267 GAGCATCTCCAGCCGTTG 58.195 61.111 0.00 0.00 0.00 4.10
333 334 9.437831 GGTTTGACCCATTTGTTAGAGCATCTC 62.438 44.444 0.00 0.00 38.48 2.75
334 335 7.748568 GGTTTGACCCATTTGTTAGAGCATCT 61.749 42.308 0.00 0.00 40.25 2.90
335 336 5.402398 GTTTGACCCATTTGTTAGAGCATC 58.598 41.667 0.00 0.00 0.00 3.91
336 337 4.220602 GGTTTGACCCATTTGTTAGAGCAT 59.779 41.667 0.00 0.00 30.04 3.79
337 338 3.572255 GGTTTGACCCATTTGTTAGAGCA 59.428 43.478 0.00 0.00 30.04 4.26
338 339 3.365969 CGGTTTGACCCATTTGTTAGAGC 60.366 47.826 0.00 0.00 33.75 4.09
339 340 3.190535 CCGGTTTGACCCATTTGTTAGAG 59.809 47.826 0.00 0.00 33.75 2.43
340 341 3.150767 CCGGTTTGACCCATTTGTTAGA 58.849 45.455 0.00 0.00 33.75 2.10
341 342 2.888414 ACCGGTTTGACCCATTTGTTAG 59.112 45.455 0.00 0.00 33.75 2.34
342 343 2.946785 ACCGGTTTGACCCATTTGTTA 58.053 42.857 0.00 0.00 33.75 2.41
343 344 1.783071 ACCGGTTTGACCCATTTGTT 58.217 45.000 0.00 0.00 33.75 2.83
344 345 1.783071 AACCGGTTTGACCCATTTGT 58.217 45.000 15.86 0.00 33.75 2.83
345 346 2.888414 ACTAACCGGTTTGACCCATTTG 59.112 45.455 31.14 6.42 33.75 2.32
346 347 3.232720 ACTAACCGGTTTGACCCATTT 57.767 42.857 31.14 7.77 33.75 2.32
347 348 2.963599 ACTAACCGGTTTGACCCATT 57.036 45.000 31.14 8.47 33.75 3.16
348 349 2.963599 AACTAACCGGTTTGACCCAT 57.036 45.000 31.14 9.17 33.75 4.00
349 350 2.688958 CAAAACTAACCGGTTTGACCCA 59.311 45.455 31.14 10.26 39.08 4.51
350 351 2.544277 GCAAAACTAACCGGTTTGACCC 60.544 50.000 31.14 12.86 39.08 4.46
351 352 2.359848 AGCAAAACTAACCGGTTTGACC 59.640 45.455 31.14 15.19 39.08 4.02
352 353 3.314357 AGAGCAAAACTAACCGGTTTGAC 59.686 43.478 31.14 17.01 39.08 3.18
353 354 3.547746 AGAGCAAAACTAACCGGTTTGA 58.452 40.909 31.14 12.50 39.08 2.69
354 355 3.982576 AGAGCAAAACTAACCGGTTTG 57.017 42.857 27.64 25.83 39.08 2.93
355 356 6.149973 GGTATAAGAGCAAAACTAACCGGTTT 59.850 38.462 27.64 5.17 40.59 3.27
356 357 5.645067 GGTATAAGAGCAAAACTAACCGGTT 59.355 40.000 25.64 25.64 0.00 4.44
357 358 5.181009 GGTATAAGAGCAAAACTAACCGGT 58.819 41.667 0.00 0.00 0.00 5.28
358 359 5.064325 GTGGTATAAGAGCAAAACTAACCGG 59.936 44.000 0.00 0.00 37.28 5.28
359 360 5.640357 TGTGGTATAAGAGCAAAACTAACCG 59.360 40.000 0.00 0.00 37.28 4.44
360 361 7.625828 ATGTGGTATAAGAGCAAAACTAACC 57.374 36.000 0.00 0.00 37.28 2.85
364 365 9.686683 AGATTAATGTGGTATAAGAGCAAAACT 57.313 29.630 0.00 0.00 37.28 2.66
368 369 8.902806 CCAAAGATTAATGTGGTATAAGAGCAA 58.097 33.333 0.00 0.00 37.28 3.91
369 370 8.271458 TCCAAAGATTAATGTGGTATAAGAGCA 58.729 33.333 0.00 0.00 32.68 4.26
370 371 8.677148 TCCAAAGATTAATGTGGTATAAGAGC 57.323 34.615 0.00 0.00 32.68 4.09
387 388 9.520515 AGTAACAAATCACACTAATCCAAAGAT 57.479 29.630 0.00 0.00 0.00 2.40
388 389 8.918202 AGTAACAAATCACACTAATCCAAAGA 57.082 30.769 0.00 0.00 0.00 2.52
389 390 7.957484 CGAGTAACAAATCACACTAATCCAAAG 59.043 37.037 0.00 0.00 0.00 2.77
390 391 7.572353 GCGAGTAACAAATCACACTAATCCAAA 60.572 37.037 0.00 0.00 0.00 3.28
391 392 6.128391 GCGAGTAACAAATCACACTAATCCAA 60.128 38.462 0.00 0.00 0.00 3.53
392 393 5.350365 GCGAGTAACAAATCACACTAATCCA 59.650 40.000 0.00 0.00 0.00 3.41
393 394 5.581085 AGCGAGTAACAAATCACACTAATCC 59.419 40.000 0.00 0.00 0.00 3.01
394 395 6.648725 AGCGAGTAACAAATCACACTAATC 57.351 37.500 0.00 0.00 0.00 1.75
395 396 6.426937 ACAAGCGAGTAACAAATCACACTAAT 59.573 34.615 0.00 0.00 0.00 1.73
396 397 5.756347 ACAAGCGAGTAACAAATCACACTAA 59.244 36.000 0.00 0.00 0.00 2.24
397 398 5.176774 CACAAGCGAGTAACAAATCACACTA 59.823 40.000 0.00 0.00 0.00 2.74
398 399 4.024893 CACAAGCGAGTAACAAATCACACT 60.025 41.667 0.00 0.00 0.00 3.55
399 400 4.211389 CACAAGCGAGTAACAAATCACAC 58.789 43.478 0.00 0.00 0.00 3.82
400 401 3.303725 GCACAAGCGAGTAACAAATCACA 60.304 43.478 0.00 0.00 0.00 3.58
401 402 3.226347 GCACAAGCGAGTAACAAATCAC 58.774 45.455 0.00 0.00 0.00 3.06
402 403 2.225491 GGCACAAGCGAGTAACAAATCA 59.775 45.455 0.00 0.00 43.41 2.57
403 404 2.724839 CGGCACAAGCGAGTAACAAATC 60.725 50.000 0.00 0.00 43.41 2.17
404 405 1.196808 CGGCACAAGCGAGTAACAAAT 59.803 47.619 0.00 0.00 43.41 2.32
405 406 0.584396 CGGCACAAGCGAGTAACAAA 59.416 50.000 0.00 0.00 43.41 2.83
406 407 0.531090 ACGGCACAAGCGAGTAACAA 60.531 50.000 0.00 0.00 43.41 2.83
407 408 0.314618 TACGGCACAAGCGAGTAACA 59.685 50.000 0.00 0.00 43.41 2.41
408 409 0.989890 CTACGGCACAAGCGAGTAAC 59.010 55.000 0.00 0.00 43.41 2.50
409 410 0.883153 TCTACGGCACAAGCGAGTAA 59.117 50.000 0.00 0.00 43.41 2.24
410 411 0.883153 TTCTACGGCACAAGCGAGTA 59.117 50.000 0.00 0.00 43.41 2.59
411 412 0.388649 CTTCTACGGCACAAGCGAGT 60.389 55.000 0.00 0.00 43.41 4.18
412 413 0.388649 ACTTCTACGGCACAAGCGAG 60.389 55.000 0.00 0.00 43.41 5.03
413 414 0.666274 CACTTCTACGGCACAAGCGA 60.666 55.000 0.00 0.00 43.41 4.93
414 415 1.626654 CCACTTCTACGGCACAAGCG 61.627 60.000 0.00 0.00 43.41 4.68
415 416 0.602905 ACCACTTCTACGGCACAAGC 60.603 55.000 0.00 0.00 41.10 4.01
416 417 1.148310 CACCACTTCTACGGCACAAG 58.852 55.000 0.00 0.00 0.00 3.16
417 418 0.466543 ACACCACTTCTACGGCACAA 59.533 50.000 0.00 0.00 0.00 3.33
418 419 0.466543 AACACCACTTCTACGGCACA 59.533 50.000 0.00 0.00 0.00 4.57
419 420 1.145803 GAACACCACTTCTACGGCAC 58.854 55.000 0.00 0.00 0.00 5.01
420 421 1.045407 AGAACACCACTTCTACGGCA 58.955 50.000 0.00 0.00 0.00 5.69
421 422 2.165319 AAGAACACCACTTCTACGGC 57.835 50.000 0.00 0.00 29.89 5.68
422 423 5.699458 ACATAAAAGAACACCACTTCTACGG 59.301 40.000 0.00 0.00 29.89 4.02
423 424 6.780706 ACATAAAAGAACACCACTTCTACG 57.219 37.500 0.00 0.00 29.89 3.51
470 471 3.915437 CACATTTGTGTCCAGGGTAAC 57.085 47.619 2.48 0.00 40.96 2.50
481 482 7.378882 GCTATAGCTCAAAGCACACATTTGTG 61.379 42.308 17.75 7.65 45.56 3.33
482 483 5.392380 GCTATAGCTCAAAGCACACATTTGT 60.392 40.000 17.75 0.00 45.56 2.83
483 484 5.032863 GCTATAGCTCAAAGCACACATTTG 58.967 41.667 17.75 0.00 45.56 2.32
484 485 5.240713 GCTATAGCTCAAAGCACACATTT 57.759 39.130 17.75 0.00 45.56 2.32
485 486 4.889832 GCTATAGCTCAAAGCACACATT 57.110 40.909 17.75 0.00 45.56 2.71
499 500 1.166531 CCCGTTTGGCCAGCTATAGC 61.167 60.000 17.33 17.33 42.49 2.97
500 501 3.006672 CCCGTTTGGCCAGCTATAG 57.993 57.895 5.11 0.00 0.00 1.31
537 538 1.961277 CGATTAGGATGGGCCGTGC 60.961 63.158 9.57 9.57 43.43 5.34
538 539 0.880278 CACGATTAGGATGGGCCGTG 60.880 60.000 1.02 0.00 43.43 4.94
539 540 1.445942 CACGATTAGGATGGGCCGT 59.554 57.895 0.00 0.00 43.43 5.68
540 541 1.961277 GCACGATTAGGATGGGCCG 60.961 63.158 0.00 0.00 43.43 6.13
541 542 1.600916 GGCACGATTAGGATGGGCC 60.601 63.158 0.00 0.00 0.00 5.80
542 543 0.886490 CAGGCACGATTAGGATGGGC 60.886 60.000 0.00 0.00 0.00 5.36
543 544 0.250467 CCAGGCACGATTAGGATGGG 60.250 60.000 0.00 0.00 0.00 4.00
544 545 0.886490 GCCAGGCACGATTAGGATGG 60.886 60.000 6.55 0.00 0.00 3.51
545 546 0.179048 TGCCAGGCACGATTAGGATG 60.179 55.000 11.22 0.00 31.71 3.51
546 547 2.220953 TGCCAGGCACGATTAGGAT 58.779 52.632 11.22 0.00 31.71 3.24
547 548 3.720494 TGCCAGGCACGATTAGGA 58.280 55.556 11.22 0.00 31.71 2.94
572 573 1.724582 ATAATCGTGCTTTGGCGGGC 61.725 55.000 0.00 0.00 42.25 6.13
573 574 0.738389 AATAATCGTGCTTTGGCGGG 59.262 50.000 0.00 0.00 42.25 6.13
574 575 3.896648 ATAATAATCGTGCTTTGGCGG 57.103 42.857 0.00 0.00 42.25 6.13
575 576 4.382831 CGTATAATAATCGTGCTTTGGCG 58.617 43.478 0.00 0.00 42.25 5.69
576 577 4.378046 CCCGTATAATAATCGTGCTTTGGC 60.378 45.833 0.00 0.00 39.26 4.52
577 578 4.378046 GCCCGTATAATAATCGTGCTTTGG 60.378 45.833 0.00 0.00 0.00 3.28
578 579 4.378046 GGCCCGTATAATAATCGTGCTTTG 60.378 45.833 0.00 0.00 0.00 2.77
579 580 3.749609 GGCCCGTATAATAATCGTGCTTT 59.250 43.478 0.00 0.00 0.00 3.51
580 581 3.332034 GGCCCGTATAATAATCGTGCTT 58.668 45.455 0.00 0.00 0.00 3.91
581 582 2.673043 CGGCCCGTATAATAATCGTGCT 60.673 50.000 0.00 0.00 0.00 4.40
582 583 1.657094 CGGCCCGTATAATAATCGTGC 59.343 52.381 0.00 0.00 0.00 5.34
583 584 2.664568 CACGGCCCGTATAATAATCGTG 59.335 50.000 9.25 0.00 38.32 4.35
584 585 2.927871 GCACGGCCCGTATAATAATCGT 60.928 50.000 9.25 0.00 38.32 3.73
585 586 1.657094 GCACGGCCCGTATAATAATCG 59.343 52.381 9.25 0.00 38.32 3.34
586 587 2.004733 GGCACGGCCCGTATAATAATC 58.995 52.381 9.25 0.00 44.06 1.75
587 588 2.103537 GGCACGGCCCGTATAATAAT 57.896 50.000 9.25 0.00 44.06 1.28
588 589 3.610637 GGCACGGCCCGTATAATAA 57.389 52.632 9.25 0.00 44.06 1.40
640 641 1.202098 CGTTTACTAATTGGGCCGTGC 60.202 52.381 0.00 0.00 0.00 5.34
641 642 1.399089 CCGTTTACTAATTGGGCCGTG 59.601 52.381 0.00 0.00 0.00 4.94
642 643 1.679640 CCCGTTTACTAATTGGGCCGT 60.680 52.381 0.00 0.00 32.09 5.68
643 644 1.018910 CCCGTTTACTAATTGGGCCG 58.981 55.000 0.00 0.00 32.09 6.13
646 647 1.018910 CGGCCCGTTTACTAATTGGG 58.981 55.000 0.00 0.00 43.02 4.12
647 648 1.018910 CCGGCCCGTTTACTAATTGG 58.981 55.000 0.85 0.00 0.00 3.16
648 649 0.379316 GCCGGCCCGTTTACTAATTG 59.621 55.000 18.11 0.00 0.00 2.32
649 650 0.035247 TGCCGGCCCGTTTACTAATT 60.035 50.000 26.77 0.00 0.00 1.40
650 651 0.745486 GTGCCGGCCCGTTTACTAAT 60.745 55.000 26.77 0.00 0.00 1.73
651 652 1.375780 GTGCCGGCCCGTTTACTAA 60.376 57.895 26.77 0.00 0.00 2.24
652 653 2.265424 GTGCCGGCCCGTTTACTA 59.735 61.111 26.77 0.00 0.00 1.82
655 656 4.622650 AACGTGCCGGCCCGTTTA 62.623 61.111 38.23 11.19 44.16 2.01
669 670 2.559330 GTGCTAAACGGGCCAACG 59.441 61.111 4.39 1.48 40.31 4.10
678 679 3.799755 CAGCCCGCCGTGCTAAAC 61.800 66.667 0.00 0.00 36.81 2.01
684 685 2.003658 AAATTATGCAGCCCGCCGTG 62.004 55.000 0.00 0.00 41.33 4.94
685 686 1.319614 AAAATTATGCAGCCCGCCGT 61.320 50.000 0.00 0.00 41.33 5.68
686 687 0.665835 TAAAATTATGCAGCCCGCCG 59.334 50.000 0.00 0.00 41.33 6.46
687 688 1.602920 GCTAAAATTATGCAGCCCGCC 60.603 52.381 0.00 0.00 41.33 6.13
688 689 1.602920 GGCTAAAATTATGCAGCCCGC 60.603 52.381 0.00 0.00 46.47 6.13
689 690 2.422276 GGCTAAAATTATGCAGCCCG 57.578 50.000 0.00 0.00 46.47 6.13
692 693 7.706179 TCAAATAACAGGCTAAAATTATGCAGC 59.294 33.333 0.00 0.00 0.00 5.25
693 694 9.023967 GTCAAATAACAGGCTAAAATTATGCAG 57.976 33.333 0.00 0.00 0.00 4.41
694 695 7.700234 CGTCAAATAACAGGCTAAAATTATGCA 59.300 33.333 0.00 0.00 0.00 3.96
695 696 7.305993 GCGTCAAATAACAGGCTAAAATTATGC 60.306 37.037 0.00 0.00 0.00 3.14
696 697 7.700234 TGCGTCAAATAACAGGCTAAAATTATG 59.300 33.333 0.00 0.00 0.00 1.90
697 698 7.700656 GTGCGTCAAATAACAGGCTAAAATTAT 59.299 33.333 0.00 0.00 0.00 1.28
698 699 7.024768 GTGCGTCAAATAACAGGCTAAAATTA 58.975 34.615 0.00 0.00 0.00 1.40
699 700 5.861787 GTGCGTCAAATAACAGGCTAAAATT 59.138 36.000 0.00 0.00 0.00 1.82
700 701 5.183140 AGTGCGTCAAATAACAGGCTAAAAT 59.817 36.000 0.00 0.00 0.00 1.82
701 702 4.517453 AGTGCGTCAAATAACAGGCTAAAA 59.483 37.500 0.00 0.00 0.00 1.52
702 703 4.069304 AGTGCGTCAAATAACAGGCTAAA 58.931 39.130 0.00 0.00 0.00 1.85
703 704 3.670625 AGTGCGTCAAATAACAGGCTAA 58.329 40.909 0.00 0.00 0.00 3.09
704 705 3.328382 AGTGCGTCAAATAACAGGCTA 57.672 42.857 0.00 0.00 0.00 3.93
705 706 2.185004 AGTGCGTCAAATAACAGGCT 57.815 45.000 0.00 0.00 0.00 4.58
706 707 3.727970 GCTTAGTGCGTCAAATAACAGGC 60.728 47.826 0.00 0.00 0.00 4.85
707 708 4.003519 GCTTAGTGCGTCAAATAACAGG 57.996 45.455 0.00 0.00 0.00 4.00
731 732 9.825109 GCCCAACATATAAAAATAGGCTAAAAA 57.175 29.630 0.00 0.00 35.00 1.94
732 733 8.425703 GGCCCAACATATAAAAATAGGCTAAAA 58.574 33.333 0.00 0.00 37.98 1.52
733 734 7.565398 TGGCCCAACATATAAAAATAGGCTAAA 59.435 33.333 0.00 0.00 37.98 1.85
734 735 7.069986 TGGCCCAACATATAAAAATAGGCTAA 58.930 34.615 0.00 0.00 37.98 3.09
735 736 6.615617 TGGCCCAACATATAAAAATAGGCTA 58.384 36.000 0.00 0.00 37.98 3.93
736 737 5.463154 TGGCCCAACATATAAAAATAGGCT 58.537 37.500 0.00 0.00 37.98 4.58
737 738 5.799827 TGGCCCAACATATAAAAATAGGC 57.200 39.130 0.00 0.00 37.14 3.93
777 778 9.276397 CGACCCGATTACGTTTTATTTTTATTT 57.724 29.630 0.00 0.00 37.88 1.40
778 779 8.450180 ACGACCCGATTACGTTTTATTTTTATT 58.550 29.630 0.00 0.00 36.91 1.40
779 780 7.904461 CACGACCCGATTACGTTTTATTTTTAT 59.096 33.333 0.00 0.00 38.18 1.40
780 781 7.232994 CACGACCCGATTACGTTTTATTTTTA 58.767 34.615 0.00 0.00 38.18 1.52
781 782 6.079120 CACGACCCGATTACGTTTTATTTTT 58.921 36.000 0.00 0.00 38.18 1.94
782 783 5.620467 CACGACCCGATTACGTTTTATTTT 58.380 37.500 0.00 0.00 38.18 1.82
783 784 4.435917 GCACGACCCGATTACGTTTTATTT 60.436 41.667 0.00 0.00 38.18 1.40
784 785 3.062504 GCACGACCCGATTACGTTTTATT 59.937 43.478 0.00 0.00 38.18 1.40
785 786 2.604462 GCACGACCCGATTACGTTTTAT 59.396 45.455 0.00 0.00 38.18 1.40
786 787 1.991965 GCACGACCCGATTACGTTTTA 59.008 47.619 0.00 0.00 38.18 1.52
787 788 0.792031 GCACGACCCGATTACGTTTT 59.208 50.000 0.00 0.00 38.18 2.43
788 789 1.015607 GGCACGACCCGATTACGTTT 61.016 55.000 0.00 0.00 38.18 3.60
789 790 1.446618 GGCACGACCCGATTACGTT 60.447 57.895 0.00 0.00 38.18 3.99
790 791 2.182537 GGCACGACCCGATTACGT 59.817 61.111 0.00 0.00 40.87 3.57
817 818 4.880537 CTAGAGGCTGGGCACGCG 62.881 72.222 3.53 3.53 0.00 6.01
818 819 4.537433 CCTAGAGGCTGGGCACGC 62.537 72.222 0.00 0.00 0.00 5.34
918 919 2.664402 AGTATAGCTGGCCAAATGGG 57.336 50.000 7.01 0.00 40.85 4.00
919 920 3.953612 TCAAAGTATAGCTGGCCAAATGG 59.046 43.478 7.01 0.00 38.53 3.16
920 921 4.498682 GCTCAAAGTATAGCTGGCCAAATG 60.499 45.833 7.01 0.00 35.80 2.32
921 922 3.633986 GCTCAAAGTATAGCTGGCCAAAT 59.366 43.478 7.01 3.30 35.80 2.32
922 923 3.016736 GCTCAAAGTATAGCTGGCCAAA 58.983 45.455 7.01 0.00 35.80 3.28
923 924 2.643551 GCTCAAAGTATAGCTGGCCAA 58.356 47.619 7.01 0.00 35.80 4.52
924 925 1.134098 GGCTCAAAGTATAGCTGGCCA 60.134 52.381 4.71 4.71 38.80 5.36
925 926 1.134098 TGGCTCAAAGTATAGCTGGCC 60.134 52.381 0.00 0.00 38.80 5.36
926 927 2.332063 TGGCTCAAAGTATAGCTGGC 57.668 50.000 0.00 0.00 38.80 4.85
927 928 6.058183 AGTAAATGGCTCAAAGTATAGCTGG 58.942 40.000 0.00 0.00 38.80 4.85
928 929 8.144478 TCTAGTAAATGGCTCAAAGTATAGCTG 58.856 37.037 0.00 0.00 38.80 4.24
929 930 8.251383 TCTAGTAAATGGCTCAAAGTATAGCT 57.749 34.615 0.00 0.00 38.80 3.32
930 931 9.145865 GATCTAGTAAATGGCTCAAAGTATAGC 57.854 37.037 0.00 0.00 38.03 2.97
931 932 9.646427 GGATCTAGTAAATGGCTCAAAGTATAG 57.354 37.037 0.00 0.00 0.00 1.31
932 933 9.154632 TGGATCTAGTAAATGGCTCAAAGTATA 57.845 33.333 0.00 0.00 0.00 1.47
933 934 8.034313 TGGATCTAGTAAATGGCTCAAAGTAT 57.966 34.615 0.00 0.00 0.00 2.12
934 935 7.432148 TGGATCTAGTAAATGGCTCAAAGTA 57.568 36.000 0.00 0.00 0.00 2.24
935 936 6.313519 TGGATCTAGTAAATGGCTCAAAGT 57.686 37.500 0.00 0.00 0.00 2.66
936 937 7.050377 TCTTGGATCTAGTAAATGGCTCAAAG 58.950 38.462 0.00 0.00 0.00 2.77
937 938 6.957631 TCTTGGATCTAGTAAATGGCTCAAA 58.042 36.000 0.00 0.00 0.00 2.69
938 939 6.384015 TCTCTTGGATCTAGTAAATGGCTCAA 59.616 38.462 0.00 0.00 0.00 3.02
944 945 7.440856 GGAGCTTTCTCTTGGATCTAGTAAATG 59.559 40.741 0.00 0.00 39.31 2.32
1008 1010 1.521681 GAACTCATCGGAAGGGGCG 60.522 63.158 0.00 0.00 0.00 6.13
1010 1012 1.144057 CGGAACTCATCGGAAGGGG 59.856 63.158 0.00 0.00 0.00 4.79
1015 1017 4.508128 GCGGCGGAACTCATCGGA 62.508 66.667 9.78 0.00 0.00 4.55
1104 1106 4.902448 AGTAGTATCTCATTGTTCCTCCCC 59.098 45.833 0.00 0.00 0.00 4.81
1116 1118 3.961408 GGAGGGAAGCAAGTAGTATCTCA 59.039 47.826 0.00 0.00 0.00 3.27
1127 1129 0.850883 ATTGGGGAGGAGGGAAGCAA 60.851 55.000 0.00 0.00 0.00 3.91
1156 1158 0.421904 AGGTACAGATTGGAGGGGGT 59.578 55.000 0.00 0.00 0.00 4.95
1157 1159 0.839946 CAGGTACAGATTGGAGGGGG 59.160 60.000 0.00 0.00 0.00 5.40
1282 1284 2.644555 AAGAAGTCGCACAGCCGTGT 62.645 55.000 1.33 0.00 45.50 4.49
1374 1376 0.179084 GGAAGATGCCGAACGGATCA 60.179 55.000 17.63 6.72 37.50 2.92
1522 1524 3.793144 CGGAAAGCTCGCCTGTGC 61.793 66.667 3.62 0.00 34.85 4.57
1620 1622 2.358737 CGCCAGAGGTCAACCCAC 60.359 66.667 0.00 0.00 36.42 4.61
1665 1667 0.935898 CGCTGAGTGCATGATTCTCC 59.064 55.000 0.00 0.00 43.06 3.71
1689 1691 4.584518 TGTGGCAGTGGCAGTGGG 62.585 66.667 21.25 0.00 43.71 4.61
1711 1740 0.698238 TAATGCCTTGCAGGTCCTGT 59.302 50.000 20.24 0.20 43.65 4.00
1712 1741 1.098050 GTAATGCCTTGCAGGTCCTG 58.902 55.000 15.15 15.15 43.65 3.86
1785 1814 1.134788 GTGTCCGGGAGATCAACGATT 60.135 52.381 0.00 0.00 0.00 3.34
1802 1831 2.878406 CCGGTTTCTTCATCACAAGTGT 59.122 45.455 0.00 0.00 0.00 3.55
1814 1843 0.702316 AATAGCCCACCCGGTTTCTT 59.298 50.000 0.00 0.00 0.00 2.52
1828 1857 1.666189 GTTCTCTGTTCGGCCAATAGC 59.334 52.381 2.24 0.00 42.60 2.97
1912 1941 0.738389 CAAAGCGTGGTCACCTTGTT 59.262 50.000 0.00 0.00 0.00 2.83
1930 1959 1.410517 GAGGATGATGTCGGAAGCTCA 59.589 52.381 0.00 0.00 0.00 4.26
1963 1992 0.179000 AACCCTATCGGCAGCTTCAG 59.821 55.000 0.00 0.00 33.26 3.02
2024 2053 5.885912 AGGTAAACAATATCACCATCACCAC 59.114 40.000 0.00 0.00 33.27 4.16
2110 2139 7.287927 AGAGTAAGCTATATCTTGCACCTTGTA 59.712 37.037 7.09 0.00 32.19 2.41
2111 2140 6.098982 AGAGTAAGCTATATCTTGCACCTTGT 59.901 38.462 7.09 0.00 32.19 3.16
2122 2151 5.930837 AGATGGCCAGAGTAAGCTATATC 57.069 43.478 13.05 0.00 29.42 1.63
2212 2244 6.260050 CACGTAATAATTACCTGCTGGATTGT 59.740 38.462 17.64 2.21 37.04 2.71
2267 2382 3.492337 AGAAATGGTGAACGGCCTAAAA 58.508 40.909 0.00 0.00 0.00 1.52
2269 2384 2.871096 AGAAATGGTGAACGGCCTAA 57.129 45.000 0.00 0.00 0.00 2.69
2308 2424 7.336931 CAGTGCTCCTAACCAATTACATTAGTT 59.663 37.037 0.00 0.00 0.00 2.24
2309 2425 6.823689 CAGTGCTCCTAACCAATTACATTAGT 59.176 38.462 0.00 0.00 0.00 2.24
2310 2426 7.047891 TCAGTGCTCCTAACCAATTACATTAG 58.952 38.462 0.00 0.00 0.00 1.73
2311 2427 6.953101 TCAGTGCTCCTAACCAATTACATTA 58.047 36.000 0.00 0.00 0.00 1.90
2312 2428 5.815581 TCAGTGCTCCTAACCAATTACATT 58.184 37.500 0.00 0.00 0.00 2.71
2370 2491 3.374745 ACAAGCAAAAGTCTGAAATGCG 58.625 40.909 0.00 0.00 41.72 4.73
2394 2516 4.206375 TCATTGTCAGCCAAACAAGAGAA 58.794 39.130 3.08 0.00 39.78 2.87
2405 2528 5.934043 TGCATACAGTATATCATTGTCAGCC 59.066 40.000 0.00 0.00 30.52 4.85
2499 2625 6.987386 TGAAGGAACAGAACAAACAAAGAAA 58.013 32.000 0.00 0.00 0.00 2.52
2525 2651 6.819397 AGTAAACTCTTGGAGGTTAAATGC 57.181 37.500 6.62 0.00 42.45 3.56
2542 2668 6.012658 TGCATCCAATGAAACAGAGTAAAC 57.987 37.500 0.00 0.00 0.00 2.01
2602 2728 4.285517 TGCCTTTCATTTATTTCCAAGCCA 59.714 37.500 0.00 0.00 0.00 4.75
2642 2768 1.661463 TGCTCAATCTCAACCTCCCT 58.339 50.000 0.00 0.00 0.00 4.20
2714 2844 4.469227 AGGATAGATATGATGTCCAGCCAC 59.531 45.833 0.00 0.00 0.00 5.01
2785 2915 0.739813 GGTGTAGTAGCAAGGTGCCG 60.740 60.000 0.00 0.00 46.52 5.69
2813 2946 2.093467 GTCGAAATCAGCTCTGAACTGC 59.907 50.000 3.47 0.00 43.58 4.40
2845 2978 2.011947 CATCAACGATGAGCATGTGGT 58.988 47.619 0.82 0.00 42.09 4.16
2858 2991 0.952497 AGCTGTGCTGGTCATCAACG 60.952 55.000 0.00 0.00 37.57 4.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.