Multiple sequence alignment - TraesCS2B01G424300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G424300 chr2B 100.000 6046 0 0 1 6046 610414963 610421008 0.000000e+00 11165.0
1 TraesCS2B01G424300 chr2B 100.000 47 0 0 239 285 46076390 46076436 3.000000e-13 87.9
2 TraesCS2B01G424300 chr2A 91.556 5365 257 68 600 5857 662338199 662343474 0.000000e+00 7217.0
3 TraesCS2B01G424300 chr2A 94.521 146 8 0 5901 6046 662343475 662343620 6.100000e-55 226.0
4 TraesCS2B01G424300 chr2A 100.000 47 0 0 241 287 60760681 60760635 3.000000e-13 87.9
5 TraesCS2B01G424300 chr2D 93.150 4394 177 51 577 4920 518265021 518269340 0.000000e+00 6333.0
6 TraesCS2B01G424300 chr2D 91.713 1074 63 13 4975 6046 518269360 518270409 0.000000e+00 1467.0
7 TraesCS2B01G424300 chr2D 89.457 313 29 3 287 597 518264695 518265005 5.680000e-105 392.0
8 TraesCS2B01G424300 chr2D 100.000 46 0 0 240 285 505643045 505643000 1.080000e-12 86.1
9 TraesCS2B01G424300 chr7B 84.240 3750 427 111 1124 4795 740036629 740032966 0.000000e+00 3500.0
10 TraesCS2B01G424300 chr7B 87.678 211 26 0 3656 3866 739990323 739990113 4.680000e-61 246.0
11 TraesCS2B01G424300 chr7B 100.000 47 0 0 239 285 575441122 575441076 3.000000e-13 87.9
12 TraesCS2B01G424300 chr7A 83.134 3765 443 113 1124 4795 730429530 730425865 0.000000e+00 3258.0
13 TraesCS2B01G424300 chr7A 84.355 1240 111 48 2720 3921 730301553 730300359 0.000000e+00 1138.0
14 TraesCS2B01G424300 chr7A 82.963 675 69 26 2720 3388 730349527 730348893 8.790000e-158 568.0
15 TraesCS2B01G424300 chr7A 87.866 478 40 6 4063 4524 730298664 730298189 4.120000e-151 545.0
16 TraesCS2B01G424300 chr7A 86.842 456 48 7 1849 2293 730358394 730357940 3.250000e-137 499.0
17 TraesCS2B01G424300 chr7A 86.404 456 48 8 1849 2293 730311141 730310689 2.530000e-133 486.0
18 TraesCS2B01G424300 chr7A 81.106 651 77 32 3149 3785 730290297 730289679 4.240000e-131 479.0
19 TraesCS2B01G424300 chr7A 86.811 417 40 6 2303 2719 730302331 730301930 9.240000e-123 451.0
20 TraesCS2B01G424300 chr7A 87.032 401 37 6 2319 2719 730350289 730349904 7.190000e-119 438.0
21 TraesCS2B01G424300 chr7A 100.000 48 0 0 240 287 6966465 6966512 8.350000e-14 89.8
22 TraesCS2B01G424300 chr7D 85.506 2877 308 71 1094 3918 635585248 635588067 0.000000e+00 2902.0
23 TraesCS2B01G424300 chr7D 82.640 841 90 29 3985 4795 635588066 635588880 0.000000e+00 693.0
24 TraesCS2B01G424300 chr6B 74.232 1498 301 60 2068 3513 716619276 716620740 3.190000e-152 549.0
25 TraesCS2B01G424300 chr6B 84.646 254 39 0 4048 4301 716621219 716621472 2.800000e-63 254.0
26 TraesCS2B01G424300 chr6B 88.816 152 17 0 4374 4525 716621562 716621713 2.880000e-43 187.0
27 TraesCS2B01G424300 chr6B 94.737 38 1 1 400 437 712194260 712194224 2.350000e-04 58.4
28 TraesCS2B01G424300 chr6B 96.970 33 1 0 400 432 671157150 671157182 8.470000e-04 56.5
29 TraesCS2B01G424300 chr4A 74.733 1405 265 57 2554 3915 741546505 741547862 4.120000e-151 545.0
30 TraesCS2B01G424300 chr4A 80.816 490 78 13 4048 4525 741548664 741549149 2.660000e-98 370.0
31 TraesCS2B01G424300 chr4A 77.069 423 74 15 2068 2470 741546003 741546422 7.890000e-54 222.0
32 TraesCS2B01G424300 chr4A 100.000 46 0 0 240 285 649061193 649061238 1.080000e-12 86.1
33 TraesCS2B01G424300 chr6D 80.533 488 82 8 4048 4525 471920783 471921267 4.450000e-96 363.0
34 TraesCS2B01G424300 chr6D 92.647 68 5 0 1034 1101 471917820 471917887 1.390000e-16 99.0
35 TraesCS2B01G424300 chr6D 95.122 41 2 0 401 441 296688653 296688693 1.410000e-06 65.8
36 TraesCS2B01G424300 chrUn 84.444 225 35 0 2068 2292 74820427 74820203 7.890000e-54 222.0
37 TraesCS2B01G424300 chrUn 89.583 144 15 0 4382 4525 74818113 74817970 3.720000e-42 183.0
38 TraesCS2B01G424300 chrUn 90.667 75 7 0 1034 1108 74821503 74821429 3.860000e-17 100.0
39 TraesCS2B01G424300 chrUn 96.970 33 1 0 401 433 27630231 27630199 8.470000e-04 56.5
40 TraesCS2B01G424300 chr4D 85.859 99 14 0 3100 3198 295023950 295024048 8.290000e-19 106.0
41 TraesCS2B01G424300 chr5B 100.000 48 0 0 240 287 423727344 423727297 8.350000e-14 89.8
42 TraesCS2B01G424300 chr5B 100.000 47 0 0 241 287 678998143 678998097 3.000000e-13 87.9
43 TraesCS2B01G424300 chr3D 100.000 47 0 0 240 286 375873455 375873501 3.000000e-13 87.9
44 TraesCS2B01G424300 chr1D 85.294 68 10 0 1041 1108 482927709 482927642 3.020000e-08 71.3
45 TraesCS2B01G424300 chr6A 100.000 32 0 0 401 432 30379576 30379607 6.540000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G424300 chr2B 610414963 610421008 6045 False 11165.000000 11165 100.000000 1 6046 1 chr2B.!!$F2 6045
1 TraesCS2B01G424300 chr2A 662338199 662343620 5421 False 3721.500000 7217 93.038500 600 6046 2 chr2A.!!$F1 5446
2 TraesCS2B01G424300 chr2D 518264695 518270409 5714 False 2730.666667 6333 91.440000 287 6046 3 chr2D.!!$F1 5759
3 TraesCS2B01G424300 chr7B 740032966 740036629 3663 True 3500.000000 3500 84.240000 1124 4795 1 chr7B.!!$R3 3671
4 TraesCS2B01G424300 chr7A 730425865 730429530 3665 True 3258.000000 3258 83.134000 1124 4795 1 chr7A.!!$R4 3671
5 TraesCS2B01G424300 chr7A 730298189 730302331 4142 True 711.333333 1138 86.344000 2303 4524 3 chr7A.!!$R5 2221
6 TraesCS2B01G424300 chr7A 730348893 730350289 1396 True 503.000000 568 84.997500 2319 3388 2 chr7A.!!$R6 1069
7 TraesCS2B01G424300 chr7A 730289679 730290297 618 True 479.000000 479 81.106000 3149 3785 1 chr7A.!!$R1 636
8 TraesCS2B01G424300 chr7D 635585248 635588880 3632 False 1797.500000 2902 84.073000 1094 4795 2 chr7D.!!$F1 3701
9 TraesCS2B01G424300 chr6B 716619276 716621713 2437 False 330.000000 549 82.564667 2068 4525 3 chr6B.!!$F2 2457
10 TraesCS2B01G424300 chr4A 741546003 741549149 3146 False 379.000000 545 77.539333 2068 4525 3 chr4A.!!$F2 2457
11 TraesCS2B01G424300 chr6D 471917820 471921267 3447 False 231.000000 363 86.590000 1034 4525 2 chr6D.!!$F2 3491

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
133 134 0.037975 CTCCAATGTTTGCCTGTGCC 60.038 55.000 0.00 0.00 36.33 5.01 F
210 211 0.109039 GTTTTGCCACCACGTGTTGT 60.109 50.000 15.65 2.88 0.00 3.32 F
212 213 0.109086 TTTGCCACCACGTGTTGTTG 60.109 50.000 15.65 5.81 0.00 3.33 F
1819 2007 0.250467 ATCAGCCACTCACACCACAC 60.250 55.000 0.00 0.00 0.00 3.82 F
2998 3644 1.412079 TTTGCCACCAATCACAGCTT 58.588 45.000 0.00 0.00 0.00 3.74 F
3845 4579 1.078214 CCGCTGGATCAAGGCTCAA 60.078 57.895 0.00 0.00 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1377 1560 0.324368 TGACGTACTCCCAGATGCCT 60.324 55.000 0.00 0.0 0.00 4.75 R
2029 2236 1.066215 CCTTAGGCATTTTTGGCACCC 60.066 52.381 2.29 0.0 36.76 4.61 R
2053 2269 5.716228 TGAAATCTGCAGGACCATTGTAAAT 59.284 36.000 15.13 0.0 0.00 1.40 R
3731 4457 0.689055 ACTGTGCAGCATTCAGGAGA 59.311 50.000 15.52 0.0 34.02 3.71 R
4371 7367 0.179076 TCCATGTGTAGCTGCCATCG 60.179 55.000 0.00 0.0 0.00 3.84 R
5735 8751 0.309612 GCGTGACGATGGTTTTGGTT 59.690 50.000 10.10 0.0 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.241036 GAATCGTTTTTCTTTTCATCGAGTG 57.759 36.000 0.00 0.00 0.00 3.51
25 26 5.728351 TCGTTTTTCTTTTCATCGAGTGT 57.272 34.783 0.00 0.00 0.00 3.55
26 27 5.498159 TCGTTTTTCTTTTCATCGAGTGTG 58.502 37.500 0.00 0.00 0.00 3.82
27 28 5.064198 TCGTTTTTCTTTTCATCGAGTGTGT 59.936 36.000 0.00 0.00 0.00 3.72
28 29 6.256104 TCGTTTTTCTTTTCATCGAGTGTGTA 59.744 34.615 0.00 0.00 0.00 2.90
29 30 6.902948 CGTTTTTCTTTTCATCGAGTGTGTAA 59.097 34.615 0.00 0.00 0.00 2.41
30 31 7.097570 CGTTTTTCTTTTCATCGAGTGTGTAAC 60.098 37.037 0.00 0.00 37.35 2.50
31 32 7.548196 TTTTCTTTTCATCGAGTGTGTAACT 57.452 32.000 0.00 0.00 43.85 2.24
32 33 6.525121 TTCTTTTCATCGAGTGTGTAACTG 57.475 37.500 0.00 0.00 40.07 3.16
33 34 4.988540 TCTTTTCATCGAGTGTGTAACTGG 59.011 41.667 0.00 0.00 40.07 4.00
34 35 4.594123 TTTCATCGAGTGTGTAACTGGA 57.406 40.909 0.00 0.00 46.23 3.86
38 39 3.570926 TCGAGTGTGTAACTGGATGTC 57.429 47.619 0.00 0.00 38.57 3.06
39 40 2.888414 TCGAGTGTGTAACTGGATGTCA 59.112 45.455 0.00 0.00 38.57 3.58
40 41 3.319689 TCGAGTGTGTAACTGGATGTCAA 59.680 43.478 0.00 0.00 38.57 3.18
41 42 4.021456 TCGAGTGTGTAACTGGATGTCAAT 60.021 41.667 0.00 0.00 38.57 2.57
42 43 4.690748 CGAGTGTGTAACTGGATGTCAATT 59.309 41.667 0.00 0.00 40.07 2.32
43 44 5.389830 CGAGTGTGTAACTGGATGTCAATTG 60.390 44.000 0.00 0.00 40.07 2.32
44 45 4.761739 AGTGTGTAACTGGATGTCAATTGG 59.238 41.667 5.42 0.00 37.88 3.16
45 46 4.759693 GTGTGTAACTGGATGTCAATTGGA 59.240 41.667 5.42 0.00 38.04 3.53
46 47 5.240623 GTGTGTAACTGGATGTCAATTGGAA 59.759 40.000 5.42 0.00 38.04 3.53
47 48 5.830457 TGTGTAACTGGATGTCAATTGGAAA 59.170 36.000 5.42 0.00 38.04 3.13
48 49 6.322456 TGTGTAACTGGATGTCAATTGGAAAA 59.678 34.615 5.42 0.00 38.04 2.29
49 50 7.015098 TGTGTAACTGGATGTCAATTGGAAAAT 59.985 33.333 5.42 0.00 38.04 1.82
50 51 7.329226 GTGTAACTGGATGTCAATTGGAAAATG 59.671 37.037 5.42 0.00 0.00 2.32
51 52 6.423776 AACTGGATGTCAATTGGAAAATGT 57.576 33.333 5.42 0.00 0.00 2.71
52 53 7.537596 AACTGGATGTCAATTGGAAAATGTA 57.462 32.000 5.42 0.00 0.00 2.29
53 54 6.924111 ACTGGATGTCAATTGGAAAATGTAC 58.076 36.000 5.42 0.00 0.00 2.90
54 55 6.493115 ACTGGATGTCAATTGGAAAATGTACA 59.507 34.615 5.42 0.00 0.00 2.90
55 56 6.923012 TGGATGTCAATTGGAAAATGTACAG 58.077 36.000 5.42 0.00 0.00 2.74
56 57 5.807011 GGATGTCAATTGGAAAATGTACAGC 59.193 40.000 5.42 2.63 0.00 4.40
57 58 5.781210 TGTCAATTGGAAAATGTACAGCA 57.219 34.783 5.42 0.00 0.00 4.41
58 59 5.771469 TGTCAATTGGAAAATGTACAGCAG 58.229 37.500 5.42 0.00 0.00 4.24
59 60 4.622740 GTCAATTGGAAAATGTACAGCAGC 59.377 41.667 5.42 0.00 0.00 5.25
60 61 3.874392 ATTGGAAAATGTACAGCAGCC 57.126 42.857 0.33 1.23 0.00 4.85
61 62 2.284754 TGGAAAATGTACAGCAGCCA 57.715 45.000 0.33 4.01 0.00 4.75
62 63 2.161855 TGGAAAATGTACAGCAGCCAG 58.838 47.619 0.33 0.00 0.00 4.85
63 64 1.474077 GGAAAATGTACAGCAGCCAGG 59.526 52.381 0.33 0.00 0.00 4.45
64 65 1.474077 GAAAATGTACAGCAGCCAGGG 59.526 52.381 0.33 0.00 0.00 4.45
65 66 0.323725 AAATGTACAGCAGCCAGGGG 60.324 55.000 0.33 0.00 0.00 4.79
66 67 1.207488 AATGTACAGCAGCCAGGGGA 61.207 55.000 0.33 0.00 0.00 4.81
67 68 1.207488 ATGTACAGCAGCCAGGGGAA 61.207 55.000 0.33 0.00 0.00 3.97
68 69 1.378762 GTACAGCAGCCAGGGGAAA 59.621 57.895 0.00 0.00 0.00 3.13
69 70 0.960861 GTACAGCAGCCAGGGGAAAC 60.961 60.000 0.00 0.00 0.00 2.78
86 87 4.692228 GGAAACCAGCAACAATTTTGAGA 58.308 39.130 0.00 0.00 0.00 3.27
87 88 5.115480 GGAAACCAGCAACAATTTTGAGAA 58.885 37.500 0.00 0.00 0.00 2.87
88 89 5.584251 GGAAACCAGCAACAATTTTGAGAAA 59.416 36.000 0.00 0.00 0.00 2.52
89 90 6.421377 AAACCAGCAACAATTTTGAGAAAC 57.579 33.333 0.00 0.00 0.00 2.78
90 91 5.343307 ACCAGCAACAATTTTGAGAAACT 57.657 34.783 0.00 0.00 0.00 2.66
91 92 5.111293 ACCAGCAACAATTTTGAGAAACTG 58.889 37.500 0.00 0.00 0.00 3.16
92 93 4.508861 CCAGCAACAATTTTGAGAAACTGG 59.491 41.667 0.00 0.00 35.45 4.00
93 94 4.508861 CAGCAACAATTTTGAGAAACTGGG 59.491 41.667 0.00 0.00 0.00 4.45
94 95 3.809279 GCAACAATTTTGAGAAACTGGGG 59.191 43.478 0.00 0.00 0.00 4.96
95 96 4.379652 CAACAATTTTGAGAAACTGGGGG 58.620 43.478 0.00 0.00 0.00 5.40
111 112 3.294750 GGGAATTTGGCCCCGTTC 58.705 61.111 0.00 0.99 39.81 3.95
112 113 1.608046 GGGAATTTGGCCCCGTTCA 60.608 57.895 0.00 0.00 39.81 3.18
113 114 1.604147 GGGAATTTGGCCCCGTTCAG 61.604 60.000 0.00 0.00 39.81 3.02
114 115 1.215382 GAATTTGGCCCCGTTCAGC 59.785 57.895 0.00 0.00 0.00 4.26
115 116 1.228862 AATTTGGCCCCGTTCAGCT 60.229 52.632 0.00 0.00 0.00 4.24
116 117 1.250840 AATTTGGCCCCGTTCAGCTC 61.251 55.000 0.00 0.00 0.00 4.09
117 118 3.860930 TTTGGCCCCGTTCAGCTCC 62.861 63.158 0.00 0.00 0.00 4.70
119 120 4.344865 GGCCCCGTTCAGCTCCAA 62.345 66.667 0.00 0.00 0.00 3.53
120 121 2.044946 GCCCCGTTCAGCTCCAAT 60.045 61.111 0.00 0.00 0.00 3.16
121 122 2.409870 GCCCCGTTCAGCTCCAATG 61.410 63.158 0.00 0.00 0.00 2.82
122 123 1.002134 CCCCGTTCAGCTCCAATGT 60.002 57.895 0.00 0.00 0.00 2.71
123 124 0.609131 CCCCGTTCAGCTCCAATGTT 60.609 55.000 0.00 0.00 0.00 2.71
124 125 1.247567 CCCGTTCAGCTCCAATGTTT 58.752 50.000 0.00 0.00 0.00 2.83
125 126 1.068333 CCCGTTCAGCTCCAATGTTTG 60.068 52.381 0.00 0.00 0.00 2.93
126 127 1.666888 CCGTTCAGCTCCAATGTTTGC 60.667 52.381 0.00 0.00 0.00 3.68
127 128 1.666888 CGTTCAGCTCCAATGTTTGCC 60.667 52.381 0.00 0.00 0.00 4.52
128 129 1.615392 GTTCAGCTCCAATGTTTGCCT 59.385 47.619 0.00 0.00 0.00 4.75
129 130 1.250328 TCAGCTCCAATGTTTGCCTG 58.750 50.000 0.00 0.00 0.00 4.85
130 131 0.963962 CAGCTCCAATGTTTGCCTGT 59.036 50.000 0.00 0.00 0.00 4.00
131 132 0.963962 AGCTCCAATGTTTGCCTGTG 59.036 50.000 0.00 0.00 0.00 3.66
132 133 0.668401 GCTCCAATGTTTGCCTGTGC 60.668 55.000 0.00 0.00 38.26 4.57
133 134 0.037975 CTCCAATGTTTGCCTGTGCC 60.038 55.000 0.00 0.00 36.33 5.01
134 135 1.004679 CCAATGTTTGCCTGTGCCC 60.005 57.895 0.00 0.00 36.33 5.36
135 136 1.747145 CAATGTTTGCCTGTGCCCA 59.253 52.632 0.00 0.00 36.33 5.36
136 137 0.320073 CAATGTTTGCCTGTGCCCAG 60.320 55.000 0.00 0.00 38.50 4.45
137 138 2.103339 AATGTTTGCCTGTGCCCAGC 62.103 55.000 0.00 0.00 37.38 4.85
138 139 3.225798 GTTTGCCTGTGCCCAGCA 61.226 61.111 0.00 0.00 37.38 4.41
139 140 2.443577 TTTGCCTGTGCCCAGCAA 60.444 55.556 0.00 0.00 41.47 3.91
140 141 2.795110 TTTGCCTGTGCCCAGCAAC 61.795 57.895 5.77 0.00 41.47 4.17
141 142 4.519612 TGCCTGTGCCCAGCAACA 62.520 61.111 0.00 0.00 41.47 3.33
142 143 3.225798 GCCTGTGCCCAGCAACAA 61.226 61.111 0.00 0.00 41.47 2.83
143 144 2.576832 GCCTGTGCCCAGCAACAAT 61.577 57.895 0.00 0.00 41.47 2.71
144 145 2.051941 CCTGTGCCCAGCAACAATT 58.948 52.632 0.00 0.00 41.47 2.32
145 146 0.393820 CCTGTGCCCAGCAACAATTT 59.606 50.000 0.00 0.00 41.47 1.82
146 147 1.617850 CCTGTGCCCAGCAACAATTTA 59.382 47.619 0.00 0.00 41.47 1.40
147 148 2.353011 CCTGTGCCCAGCAACAATTTAG 60.353 50.000 0.00 0.00 41.47 1.85
148 149 2.557924 CTGTGCCCAGCAACAATTTAGA 59.442 45.455 0.00 0.00 41.47 2.10
149 150 2.557924 TGTGCCCAGCAACAATTTAGAG 59.442 45.455 0.00 0.00 41.47 2.43
150 151 2.819608 GTGCCCAGCAACAATTTAGAGA 59.180 45.455 0.00 0.00 41.47 3.10
151 152 3.255642 GTGCCCAGCAACAATTTAGAGAA 59.744 43.478 0.00 0.00 41.47 2.87
152 153 3.894427 TGCCCAGCAACAATTTAGAGAAA 59.106 39.130 0.00 0.00 34.76 2.52
153 154 4.022068 TGCCCAGCAACAATTTAGAGAAAG 60.022 41.667 0.00 0.00 34.76 2.62
154 155 4.021981 GCCCAGCAACAATTTAGAGAAAGT 60.022 41.667 0.00 0.00 0.00 2.66
155 156 5.509670 GCCCAGCAACAATTTAGAGAAAGTT 60.510 40.000 0.00 0.00 0.00 2.66
156 157 5.922544 CCCAGCAACAATTTAGAGAAAGTTG 59.077 40.000 0.00 0.00 35.41 3.16
157 158 6.239008 CCCAGCAACAATTTAGAGAAAGTTGA 60.239 38.462 0.00 0.00 34.77 3.18
158 159 6.860023 CCAGCAACAATTTAGAGAAAGTTGAG 59.140 38.462 0.00 0.00 34.77 3.02
159 160 7.255242 CCAGCAACAATTTAGAGAAAGTTGAGA 60.255 37.037 0.00 0.00 34.77 3.27
160 161 8.131100 CAGCAACAATTTAGAGAAAGTTGAGAA 58.869 33.333 0.00 0.00 34.77 2.87
161 162 8.686334 AGCAACAATTTAGAGAAAGTTGAGAAA 58.314 29.630 0.00 0.00 34.77 2.52
162 163 8.746751 GCAACAATTTAGAGAAAGTTGAGAAAC 58.253 33.333 0.00 0.00 34.77 2.78
165 166 9.396022 ACAATTTAGAGAAAGTTGAGAAACTGA 57.604 29.630 0.76 0.00 32.47 3.41
168 169 7.787725 TTAGAGAAAGTTGAGAAACTGAACC 57.212 36.000 0.00 0.00 28.09 3.62
169 170 5.745227 AGAGAAAGTTGAGAAACTGAACCA 58.255 37.500 0.00 0.00 28.09 3.67
170 171 6.360618 AGAGAAAGTTGAGAAACTGAACCAT 58.639 36.000 0.00 0.00 28.09 3.55
171 172 6.830838 AGAGAAAGTTGAGAAACTGAACCATT 59.169 34.615 0.00 0.00 28.09 3.16
172 173 7.012799 AGAGAAAGTTGAGAAACTGAACCATTC 59.987 37.037 0.00 0.00 28.09 2.67
173 174 5.424121 AAGTTGAGAAACTGAACCATTCG 57.576 39.130 0.00 0.00 28.09 3.34
174 175 3.815401 AGTTGAGAAACTGAACCATTCGG 59.185 43.478 0.00 0.00 41.86 4.30
175 176 2.151202 TGAGAAACTGAACCATTCGGC 58.849 47.619 0.00 0.00 39.72 5.54
176 177 1.468914 GAGAAACTGAACCATTCGGCC 59.531 52.381 0.00 0.00 39.72 6.13
177 178 0.526211 GAAACTGAACCATTCGGCCC 59.474 55.000 0.00 0.00 39.72 5.80
178 179 0.898326 AAACTGAACCATTCGGCCCC 60.898 55.000 0.00 0.00 39.72 5.80
179 180 2.075355 AACTGAACCATTCGGCCCCA 62.075 55.000 0.00 0.00 39.72 4.96
180 181 1.304052 CTGAACCATTCGGCCCCAA 60.304 57.895 0.00 0.00 34.57 4.12
181 182 0.684153 CTGAACCATTCGGCCCCAAT 60.684 55.000 0.00 0.00 34.57 3.16
182 183 0.969917 TGAACCATTCGGCCCCAATG 60.970 55.000 13.18 13.18 34.57 2.82
183 184 2.296814 GAACCATTCGGCCCCAATGC 62.297 60.000 14.31 1.05 34.57 3.56
184 185 2.442643 CCATTCGGCCCCAATGCT 60.443 61.111 14.31 0.00 30.94 3.79
185 186 2.059786 CCATTCGGCCCCAATGCTT 61.060 57.895 14.31 0.00 30.94 3.91
186 187 1.616091 CCATTCGGCCCCAATGCTTT 61.616 55.000 14.31 0.00 30.94 3.51
187 188 1.110442 CATTCGGCCCCAATGCTTTA 58.890 50.000 8.74 0.00 0.00 1.85
188 189 1.688197 CATTCGGCCCCAATGCTTTAT 59.312 47.619 8.74 0.00 0.00 1.40
189 190 1.398692 TTCGGCCCCAATGCTTTATC 58.601 50.000 0.00 0.00 0.00 1.75
190 191 0.550914 TCGGCCCCAATGCTTTATCT 59.449 50.000 0.00 0.00 0.00 1.98
191 192 0.670162 CGGCCCCAATGCTTTATCTG 59.330 55.000 0.00 0.00 0.00 2.90
192 193 1.780503 GGCCCCAATGCTTTATCTGT 58.219 50.000 0.00 0.00 0.00 3.41
193 194 2.110578 GGCCCCAATGCTTTATCTGTT 58.889 47.619 0.00 0.00 0.00 3.16
194 195 2.501316 GGCCCCAATGCTTTATCTGTTT 59.499 45.455 0.00 0.00 0.00 2.83
195 196 3.055167 GGCCCCAATGCTTTATCTGTTTT 60.055 43.478 0.00 0.00 0.00 2.43
196 197 3.934579 GCCCCAATGCTTTATCTGTTTTG 59.065 43.478 0.00 0.00 0.00 2.44
197 198 3.934579 CCCCAATGCTTTATCTGTTTTGC 59.065 43.478 0.00 0.00 0.00 3.68
198 199 3.934579 CCCAATGCTTTATCTGTTTTGCC 59.065 43.478 0.00 0.00 0.00 4.52
199 200 4.563168 CCCAATGCTTTATCTGTTTTGCCA 60.563 41.667 0.00 0.00 0.00 4.92
200 201 4.389687 CCAATGCTTTATCTGTTTTGCCAC 59.610 41.667 0.00 0.00 0.00 5.01
201 202 3.658757 TGCTTTATCTGTTTTGCCACC 57.341 42.857 0.00 0.00 0.00 4.61
202 203 2.961741 TGCTTTATCTGTTTTGCCACCA 59.038 40.909 0.00 0.00 0.00 4.17
203 204 3.243704 TGCTTTATCTGTTTTGCCACCAC 60.244 43.478 0.00 0.00 0.00 4.16
204 205 3.564511 CTTTATCTGTTTTGCCACCACG 58.435 45.455 0.00 0.00 0.00 4.94
205 206 2.264005 TATCTGTTTTGCCACCACGT 57.736 45.000 0.00 0.00 0.00 4.49
206 207 0.667993 ATCTGTTTTGCCACCACGTG 59.332 50.000 9.08 9.08 0.00 4.49
207 208 0.678366 TCTGTTTTGCCACCACGTGT 60.678 50.000 15.65 0.00 0.00 4.49
208 209 0.172352 CTGTTTTGCCACCACGTGTT 59.828 50.000 15.65 0.00 0.00 3.32
209 210 0.109086 TGTTTTGCCACCACGTGTTG 60.109 50.000 15.65 10.91 0.00 3.33
210 211 0.109039 GTTTTGCCACCACGTGTTGT 60.109 50.000 15.65 2.88 0.00 3.32
211 212 0.603569 TTTTGCCACCACGTGTTGTT 59.396 45.000 15.65 0.00 0.00 2.83
212 213 0.109086 TTTGCCACCACGTGTTGTTG 60.109 50.000 15.65 5.81 0.00 3.33
213 214 1.244697 TTGCCACCACGTGTTGTTGT 61.245 50.000 15.65 1.23 0.00 3.32
214 215 1.226547 GCCACCACGTGTTGTTGTG 60.227 57.895 15.65 14.14 42.38 3.33
215 216 1.226547 CCACCACGTGTTGTTGTGC 60.227 57.895 15.65 0.00 41.62 4.57
216 217 1.653094 CCACCACGTGTTGTTGTGCT 61.653 55.000 15.65 0.00 41.62 4.40
217 218 0.523125 CACCACGTGTTGTTGTGCTG 60.523 55.000 15.65 0.00 37.41 4.41
218 219 1.586042 CCACGTGTTGTTGTGCTGC 60.586 57.895 15.65 0.00 34.77 5.25
219 220 1.429021 CACGTGTTGTTGTGCTGCT 59.571 52.632 7.58 0.00 0.00 4.24
220 221 0.655208 CACGTGTTGTTGTGCTGCTA 59.345 50.000 7.58 0.00 0.00 3.49
221 222 1.063321 CACGTGTTGTTGTGCTGCTAA 59.937 47.619 7.58 0.00 0.00 3.09
222 223 1.740585 ACGTGTTGTTGTGCTGCTAAA 59.259 42.857 0.00 0.00 0.00 1.85
223 224 2.108700 CGTGTTGTTGTGCTGCTAAAC 58.891 47.619 0.00 6.16 0.00 2.01
224 225 2.477021 CGTGTTGTTGTGCTGCTAAACA 60.477 45.455 14.01 14.01 32.19 2.83
225 226 3.705604 GTGTTGTTGTGCTGCTAAACAT 58.294 40.909 17.23 0.00 34.04 2.71
226 227 4.111916 GTGTTGTTGTGCTGCTAAACATT 58.888 39.130 17.23 0.00 34.04 2.71
227 228 4.566360 GTGTTGTTGTGCTGCTAAACATTT 59.434 37.500 17.23 0.00 34.04 2.32
228 229 4.565962 TGTTGTTGTGCTGCTAAACATTTG 59.434 37.500 17.23 0.00 34.04 2.32
229 230 4.383850 TGTTGTGCTGCTAAACATTTGT 57.616 36.364 14.01 0.00 0.00 2.83
230 231 5.506686 TGTTGTGCTGCTAAACATTTGTA 57.493 34.783 14.01 0.00 0.00 2.41
231 232 6.083098 TGTTGTGCTGCTAAACATTTGTAT 57.917 33.333 14.01 0.00 0.00 2.29
232 233 6.511416 TGTTGTGCTGCTAAACATTTGTATT 58.489 32.000 14.01 0.00 0.00 1.89
233 234 6.640499 TGTTGTGCTGCTAAACATTTGTATTC 59.360 34.615 14.01 0.00 0.00 1.75
234 235 5.708948 TGTGCTGCTAAACATTTGTATTCC 58.291 37.500 0.00 0.00 0.00 3.01
235 236 5.102313 GTGCTGCTAAACATTTGTATTCCC 58.898 41.667 0.00 0.00 0.00 3.97
236 237 4.769488 TGCTGCTAAACATTTGTATTCCCA 59.231 37.500 0.00 0.00 0.00 4.37
237 238 5.105797 TGCTGCTAAACATTTGTATTCCCAG 60.106 40.000 0.00 0.00 0.00 4.45
238 239 5.125417 GCTGCTAAACATTTGTATTCCCAGA 59.875 40.000 0.00 0.00 0.00 3.86
239 240 6.183360 GCTGCTAAACATTTGTATTCCCAGAT 60.183 38.462 0.00 0.00 0.00 2.90
240 241 7.631377 GCTGCTAAACATTTGTATTCCCAGATT 60.631 37.037 0.00 0.00 0.00 2.40
241 242 8.133024 TGCTAAACATTTGTATTCCCAGATTT 57.867 30.769 0.00 0.00 0.00 2.17
242 243 8.592809 TGCTAAACATTTGTATTCCCAGATTTT 58.407 29.630 0.00 0.00 0.00 1.82
243 244 9.435688 GCTAAACATTTGTATTCCCAGATTTTT 57.564 29.630 0.00 0.00 0.00 1.94
259 260 2.535588 TTTTTGACGGAGCTACGGC 58.464 52.632 24.83 22.72 43.68 5.68
266 267 3.534056 GGAGCTACGGCGGGCTTA 61.534 66.667 25.05 3.19 44.37 3.09
267 268 2.279318 GAGCTACGGCGGGCTTAC 60.279 66.667 25.05 13.36 44.37 2.34
268 269 4.203076 AGCTACGGCGGGCTTACG 62.203 66.667 20.44 0.00 44.37 3.18
279 280 3.497031 GCTTACGCCGGCCTGAAC 61.497 66.667 23.46 3.95 0.00 3.18
280 281 2.818274 CTTACGCCGGCCTGAACC 60.818 66.667 23.46 0.00 0.00 3.62
281 282 3.599285 CTTACGCCGGCCTGAACCA 62.599 63.158 23.46 0.00 0.00 3.67
282 283 2.869503 CTTACGCCGGCCTGAACCAT 62.870 60.000 23.46 0.00 0.00 3.55
283 284 2.472414 TTACGCCGGCCTGAACCATT 62.472 55.000 23.46 0.00 0.00 3.16
284 285 2.472414 TACGCCGGCCTGAACCATTT 62.472 55.000 23.46 0.00 0.00 2.32
285 286 2.885113 GCCGGCCTGAACCATTTC 59.115 61.111 18.11 0.00 0.00 2.17
323 324 0.897621 AGCATCACATGGACGACAGA 59.102 50.000 0.00 0.00 0.00 3.41
325 326 1.394917 GCATCACATGGACGACAGAAC 59.605 52.381 0.00 0.00 0.00 3.01
337 338 7.447374 TGGACGACAGAACAAATTTGATATT 57.553 32.000 24.64 8.64 0.00 1.28
374 375 5.426504 AGTGAGGCTGATACTCAATTTCTG 58.573 41.667 0.00 0.00 45.66 3.02
375 376 4.574013 GTGAGGCTGATACTCAATTTCTGG 59.426 45.833 0.00 0.00 45.66 3.86
381 382 5.294552 GCTGATACTCAATTTCTGGTGTACC 59.705 44.000 0.00 0.00 0.00 3.34
388 389 6.039382 ACTCAATTTCTGGTGTACCTTGTTTC 59.961 38.462 2.32 0.00 36.82 2.78
398 399 5.535030 GGTGTACCTTGTTTCTCCATTTCTT 59.465 40.000 0.00 0.00 0.00 2.52
399 400 6.294010 GGTGTACCTTGTTTCTCCATTTCTTC 60.294 42.308 0.00 0.00 0.00 2.87
408 409 8.660295 TGTTTCTCCATTTCTTCTACTACCTA 57.340 34.615 0.00 0.00 0.00 3.08
451 452 4.930463 TTTTGCAAACTTTTCGGTTTCC 57.070 36.364 12.39 0.00 37.32 3.13
453 454 2.104170 TGCAAACTTTTCGGTTTCCCT 58.896 42.857 0.00 0.00 37.32 4.20
454 455 2.498078 TGCAAACTTTTCGGTTTCCCTT 59.502 40.909 0.00 0.00 37.32 3.95
475 476 3.243855 TTTTTGAGGTTTGACGCGC 57.756 47.368 5.73 0.00 0.00 6.86
518 521 4.003648 GTGTTTCATTGGTCTGGTAGGAG 58.996 47.826 0.00 0.00 0.00 3.69
528 531 3.274288 GTCTGGTAGGAGCAAGATTTGG 58.726 50.000 0.00 0.00 0.00 3.28
553 556 2.960170 CCTGCAGACTTGGCAAGC 59.040 61.111 26.45 18.40 41.39 4.01
564 567 2.362120 GGCAAGCTGGCATCCTGT 60.362 61.111 16.69 0.00 43.14 4.00
671 710 5.617087 GCTTTCTGTCCTAAACTAAAAGCGG 60.617 44.000 0.00 0.00 41.61 5.52
675 714 3.268330 GTCCTAAACTAAAAGCGGGAGG 58.732 50.000 0.00 0.00 0.00 4.30
687 726 3.934457 AGCGGGAGGTTAACAAAAATG 57.066 42.857 8.10 0.00 37.18 2.32
734 774 1.954927 CTATGCGTTTCTTCCCTCCC 58.045 55.000 0.00 0.00 0.00 4.30
848 907 3.954258 ACACCAAAGAAAACTTCCTCCAG 59.046 43.478 0.00 0.00 0.00 3.86
921 981 1.750778 CCAGACAAACCACACAGCTTT 59.249 47.619 0.00 0.00 0.00 3.51
922 982 2.223572 CCAGACAAACCACACAGCTTTC 60.224 50.000 0.00 0.00 0.00 2.62
936 996 1.076187 AGCTTTCCTTCCCTTTCCCAG 59.924 52.381 0.00 0.00 0.00 4.45
966 1026 2.041115 GGCCTTCTCCGCCAACTTC 61.041 63.158 0.00 0.00 46.27 3.01
987 1047 2.267324 GAGCCTGGTGGTGAGCTC 59.733 66.667 6.82 6.82 44.36 4.09
1116 1264 1.666553 CCAGCGCTACGTGTCCAAA 60.667 57.895 10.99 0.00 0.00 3.28
1280 1432 4.961438 AATTGCCCAATTCACTTCTGTT 57.039 36.364 0.57 0.00 36.34 3.16
1282 1434 2.942804 TGCCCAATTCACTTCTGTTGA 58.057 42.857 0.00 0.00 0.00 3.18
1283 1435 2.622942 TGCCCAATTCACTTCTGTTGAC 59.377 45.455 0.00 0.00 0.00 3.18
1300 1481 6.156949 TCTGTTGACAGGAGAGCCTATTAAAT 59.843 38.462 10.97 0.00 44.80 1.40
1620 1808 1.363744 CCAAGGATGACAACTCGCTC 58.636 55.000 0.00 0.00 0.00 5.03
1819 2007 0.250467 ATCAGCCACTCACACCACAC 60.250 55.000 0.00 0.00 0.00 3.82
1854 2050 8.553459 AAATTAACAGACTGGTCAGACTTATG 57.447 34.615 7.51 0.00 31.39 1.90
2014 2218 6.451064 AGGTAATGTACTGCCAAATTAAGC 57.549 37.500 0.00 0.00 0.00 3.09
2029 2236 7.096065 GCCAAATTAAGCGGCATAAAAATCTAG 60.096 37.037 1.45 0.00 45.52 2.43
2053 2269 4.262678 GGTGCCAAAAATGCCTAAGGTTTA 60.263 41.667 0.00 0.00 0.00 2.01
2133 2366 1.867919 CGAGAGGTGCAAGGAGACGT 61.868 60.000 0.00 0.00 0.00 4.34
2153 2386 7.162082 AGACGTTGAATTTCCTATCTGAAGTT 58.838 34.615 0.00 0.00 0.00 2.66
2471 2726 6.976934 ACACCAAAGATTCTTGTGGTAAAT 57.023 33.333 22.06 13.70 42.53 1.40
2552 2808 5.984695 ACTAATGTCTACTCTTGTGCTGA 57.015 39.130 0.00 0.00 0.00 4.26
2830 3471 3.650281 TGCAATTTCAGGATGCCTCTA 57.350 42.857 0.00 0.00 39.31 2.43
2998 3644 1.412079 TTTGCCACCAATCACAGCTT 58.588 45.000 0.00 0.00 0.00 3.74
3003 3649 2.493278 GCCACCAATCACAGCTTATGTT 59.507 45.455 0.00 0.00 41.41 2.71
3493 4163 1.816835 TGCTGTACAGTAAGGAGGACG 59.183 52.381 23.44 0.00 0.00 4.79
3731 4457 2.050351 CTCGTCGTCGTTGCAGGT 60.050 61.111 1.33 0.00 38.33 4.00
3845 4579 1.078214 CCGCTGGATCAAGGCTCAA 60.078 57.895 0.00 0.00 0.00 3.02
3921 4655 6.035843 GGTGCATTTGTTCAGGTATACAATG 58.964 40.000 5.01 5.49 34.52 2.82
3963 4697 6.456584 GCTCGATCATGAACAATATATGCCTG 60.457 42.308 0.00 0.00 0.00 4.85
4311 7285 1.480954 ACGAATGGTAGGCATCGACTT 59.519 47.619 0.64 0.00 38.59 3.01
4371 7367 8.036575 TGGTAAGAATACTAACCATGTGTACAC 58.963 37.037 19.36 19.36 37.09 2.90
4539 7535 9.987726 AATCTGGTGAGTCTATGATCTGATATA 57.012 33.333 0.00 0.00 0.00 0.86
4558 7554 0.393944 ACATCTGATGCAGTGGCCAG 60.394 55.000 17.24 0.00 40.13 4.85
4590 7586 4.158394 GCAAACAAGATGATAGCCAAAGGA 59.842 41.667 0.00 0.00 0.00 3.36
4711 7717 2.740826 GCGGCAGAGCGTAACCAA 60.741 61.111 0.00 0.00 0.00 3.67
4864 7872 1.066787 GGTCCAGAGGTTAGTCACTGC 60.067 57.143 0.00 0.00 0.00 4.40
4875 7883 1.333177 AGTCACTGCTCGGTTCTTCT 58.667 50.000 0.00 0.00 0.00 2.85
4897 7905 2.231964 TCCTTCCAGCAATGCATGAAAC 59.768 45.455 8.35 0.00 0.00 2.78
4898 7906 2.028839 CCTTCCAGCAATGCATGAAACA 60.029 45.455 8.35 0.00 0.00 2.83
4914 7922 8.236586 TGCATGAAACAATCTGTAGAACAATAC 58.763 33.333 0.00 0.00 0.00 1.89
4928 7936 7.929245 TGTAGAACAATACAGTGAAAAGTGCTA 59.071 33.333 0.00 0.00 32.03 3.49
4929 7937 7.986085 AGAACAATACAGTGAAAAGTGCTAT 57.014 32.000 0.00 0.00 0.00 2.97
4931 7939 9.672673 AGAACAATACAGTGAAAAGTGCTATAT 57.327 29.630 0.00 0.00 0.00 0.86
4938 7946 8.581057 ACAGTGAAAAGTGCTATATTAGATCG 57.419 34.615 0.00 0.00 0.00 3.69
4939 7947 8.414003 ACAGTGAAAAGTGCTATATTAGATCGA 58.586 33.333 0.00 0.00 0.00 3.59
4940 7948 8.910666 CAGTGAAAAGTGCTATATTAGATCGAG 58.089 37.037 0.00 0.00 0.00 4.04
4941 7949 7.596995 AGTGAAAAGTGCTATATTAGATCGAGC 59.403 37.037 0.00 0.00 0.00 5.03
4942 7950 7.382488 GTGAAAAGTGCTATATTAGATCGAGCA 59.618 37.037 2.38 0.00 40.71 4.26
4943 7951 8.090831 TGAAAAGTGCTATATTAGATCGAGCAT 58.909 33.333 2.38 0.00 44.39 3.79
4944 7952 7.824704 AAAGTGCTATATTAGATCGAGCATG 57.175 36.000 2.38 0.00 44.39 4.06
4945 7953 5.347342 AGTGCTATATTAGATCGAGCATGC 58.653 41.667 10.51 10.51 44.39 4.06
4946 7954 4.205996 GTGCTATATTAGATCGAGCATGCG 59.794 45.833 13.01 0.00 44.39 4.73
4947 7955 4.142381 TGCTATATTAGATCGAGCATGCGT 60.142 41.667 13.01 0.00 38.20 5.24
4948 7956 4.205996 GCTATATTAGATCGAGCATGCGTG 59.794 45.833 13.01 9.05 33.26 5.34
4965 7973 1.267806 CGTGCTGACCTTTGAATGCTT 59.732 47.619 0.00 0.00 0.00 3.91
4971 7979 4.218417 GCTGACCTTTGAATGCTTCCTTTA 59.782 41.667 0.00 0.00 0.00 1.85
4979 7988 7.442062 CCTTTGAATGCTTCCTTTATTTGTGTT 59.558 33.333 0.00 0.00 0.00 3.32
5051 8060 5.593095 ACAGAACGGCTACAGATGAACTATA 59.407 40.000 0.00 0.00 0.00 1.31
5096 8107 2.032550 CGCAGCTCGATTCATTCCATTT 59.967 45.455 0.00 0.00 41.67 2.32
5100 8111 8.948936 CGCAGCTCGATTCATTCCATTTATGG 62.949 46.154 2.19 2.19 44.66 2.74
5140 8151 4.222366 TGGTGTGGGATTTGTATACGTGTA 59.778 41.667 0.00 0.00 0.00 2.90
5193 8204 9.522804 GTTGTTTGGAAACATGTAACAAAGATA 57.477 29.630 20.07 9.68 45.19 1.98
5251 8262 5.545658 TGATTGAAGATTTGTTCTACGCC 57.454 39.130 0.00 0.00 33.05 5.68
5265 8276 2.617308 TCTACGCCGAGAATCTACTTGG 59.383 50.000 0.00 0.00 42.63 3.61
5285 8296 5.860941 TGGCACAAGGTCTCAAATTTTAA 57.139 34.783 0.00 0.00 31.92 1.52
5317 8328 9.806203 TTAAATGAGATATCAATTTGCCTTGTG 57.194 29.630 19.21 0.00 0.00 3.33
5365 8380 6.886459 AGCACTCCAACTTACAATGTATGAAT 59.114 34.615 12.40 0.00 0.00 2.57
5431 8446 2.844946 TGGAATCGCTGAAGACAACAA 58.155 42.857 0.00 0.00 0.00 2.83
5432 8447 3.210227 TGGAATCGCTGAAGACAACAAA 58.790 40.909 0.00 0.00 0.00 2.83
5440 8455 5.036737 CGCTGAAGACAACAAACAGAAAAT 58.963 37.500 0.00 0.00 0.00 1.82
5486 8501 4.094887 CCGGGAGACAGTTGTAAATCAATG 59.905 45.833 0.00 0.00 38.38 2.82
5568 8583 1.554617 TCGGTTCAGATGGATGCAAGA 59.445 47.619 0.00 0.00 0.00 3.02
5575 8590 3.055458 TCAGATGGATGCAAGAAACCGTA 60.055 43.478 0.00 0.00 0.00 4.02
5691 8707 3.326880 CACCAGATCCATGATCCATCTGA 59.673 47.826 18.22 0.00 44.35 3.27
5692 8708 3.583526 ACCAGATCCATGATCCATCTGAG 59.416 47.826 18.22 13.14 44.35 3.35
5695 8711 3.651423 AGATCCATGATCCATCTGAGCAA 59.349 43.478 0.00 0.00 43.76 3.91
5696 8712 3.937778 TCCATGATCCATCTGAGCAAA 57.062 42.857 0.00 0.00 43.76 3.68
5698 8714 3.054213 TCCATGATCCATCTGAGCAAACA 60.054 43.478 0.00 0.00 43.76 2.83
5699 8715 3.315470 CCATGATCCATCTGAGCAAACAG 59.685 47.826 0.00 0.00 43.76 3.16
5700 8716 2.995283 TGATCCATCTGAGCAAACAGG 58.005 47.619 0.00 0.00 36.19 4.00
5701 8717 2.295885 GATCCATCTGAGCAAACAGGG 58.704 52.381 0.00 0.00 38.31 4.45
5702 8718 1.361204 TCCATCTGAGCAAACAGGGA 58.639 50.000 0.00 0.00 38.31 4.20
5703 8719 1.280133 TCCATCTGAGCAAACAGGGAG 59.720 52.381 0.00 0.00 38.31 4.30
5704 8720 1.280133 CCATCTGAGCAAACAGGGAGA 59.720 52.381 0.00 0.00 38.31 3.71
5705 8721 2.354259 CATCTGAGCAAACAGGGAGAC 58.646 52.381 0.00 0.00 38.31 3.36
5732 8748 3.953775 CGCCTCACAACCACCCCT 61.954 66.667 0.00 0.00 0.00 4.79
5735 8751 1.843421 CCTCACAACCACCCCTGAA 59.157 57.895 0.00 0.00 0.00 3.02
5736 8752 0.184933 CCTCACAACCACCCCTGAAA 59.815 55.000 0.00 0.00 0.00 2.69
5773 8790 1.476833 GCCTCCGCATTTTCTATCCCA 60.477 52.381 0.00 0.00 34.03 4.37
5866 8883 0.610174 TTAGCAGCAGCAGCAGTACT 59.390 50.000 12.92 0.00 45.49 2.73
5867 8884 1.474330 TAGCAGCAGCAGCAGTACTA 58.526 50.000 12.92 0.00 45.49 1.82
5878 8895 4.082679 AGCAGCAGTACTACAGAGTGTAAC 60.083 45.833 0.00 0.00 36.28 2.50
5931 8948 7.064134 CACCATTACTACTTTTCGCTACAATCA 59.936 37.037 0.00 0.00 0.00 2.57
5950 8967 7.673180 ACAATCACAATGACCAGATGAAAAAT 58.327 30.769 0.00 0.00 0.00 1.82
5979 8997 5.189659 AGATTACGGAAGACATAGACAGC 57.810 43.478 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.851330 ACACTCGATGAAAAGAAAAACGATTC 59.149 34.615 0.00 0.00 0.00 2.52
1 2 6.632834 CACACTCGATGAAAAGAAAAACGATT 59.367 34.615 0.00 0.00 0.00 3.34
2 3 6.136071 CACACTCGATGAAAAGAAAAACGAT 58.864 36.000 0.00 0.00 0.00 3.73
5 6 7.908601 AGTTACACACTCGATGAAAAGAAAAAC 59.091 33.333 0.00 0.00 0.00 2.43
6 7 7.908082 CAGTTACACACTCGATGAAAAGAAAAA 59.092 33.333 0.00 0.00 30.92 1.94
7 8 7.406553 CAGTTACACACTCGATGAAAAGAAAA 58.593 34.615 0.00 0.00 30.92 2.29
8 9 6.018262 CCAGTTACACACTCGATGAAAAGAAA 60.018 38.462 0.00 0.00 30.92 2.52
9 10 5.465390 CCAGTTACACACTCGATGAAAAGAA 59.535 40.000 0.00 0.00 30.92 2.52
10 11 4.988540 CCAGTTACACACTCGATGAAAAGA 59.011 41.667 0.00 0.00 30.92 2.52
11 12 4.988540 TCCAGTTACACACTCGATGAAAAG 59.011 41.667 0.00 0.00 30.92 2.27
12 13 4.951254 TCCAGTTACACACTCGATGAAAA 58.049 39.130 0.00 0.00 30.92 2.29
13 14 4.594123 TCCAGTTACACACTCGATGAAA 57.406 40.909 0.00 0.00 30.92 2.69
14 15 4.801330 ATCCAGTTACACACTCGATGAA 57.199 40.909 0.00 0.00 32.48 2.57
17 18 3.509967 TGACATCCAGTTACACACTCGAT 59.490 43.478 0.00 0.00 33.87 3.59
18 19 2.888414 TGACATCCAGTTACACACTCGA 59.112 45.455 0.00 0.00 30.92 4.04
19 20 3.297830 TGACATCCAGTTACACACTCG 57.702 47.619 0.00 0.00 30.92 4.18
20 21 5.106555 CCAATTGACATCCAGTTACACACTC 60.107 44.000 7.12 0.00 30.92 3.51
21 22 4.761739 CCAATTGACATCCAGTTACACACT 59.238 41.667 7.12 0.00 35.35 3.55
22 23 4.759693 TCCAATTGACATCCAGTTACACAC 59.240 41.667 7.12 0.00 0.00 3.82
23 24 4.979335 TCCAATTGACATCCAGTTACACA 58.021 39.130 7.12 0.00 0.00 3.72
24 25 5.957842 TTCCAATTGACATCCAGTTACAC 57.042 39.130 7.12 0.00 0.00 2.90
25 26 6.968263 TTTTCCAATTGACATCCAGTTACA 57.032 33.333 7.12 0.00 0.00 2.41
26 27 7.378181 ACATTTTCCAATTGACATCCAGTTAC 58.622 34.615 7.12 0.00 0.00 2.50
27 28 7.537596 ACATTTTCCAATTGACATCCAGTTA 57.462 32.000 7.12 0.00 0.00 2.24
28 29 6.423776 ACATTTTCCAATTGACATCCAGTT 57.576 33.333 7.12 0.00 0.00 3.16
29 30 6.493115 TGTACATTTTCCAATTGACATCCAGT 59.507 34.615 7.12 0.19 0.00 4.00
30 31 6.923012 TGTACATTTTCCAATTGACATCCAG 58.077 36.000 7.12 0.00 0.00 3.86
31 32 6.572119 GCTGTACATTTTCCAATTGACATCCA 60.572 38.462 7.12 0.00 0.00 3.41
32 33 5.807011 GCTGTACATTTTCCAATTGACATCC 59.193 40.000 7.12 0.00 0.00 3.51
33 34 6.389091 TGCTGTACATTTTCCAATTGACATC 58.611 36.000 7.12 0.00 0.00 3.06
34 35 6.343716 TGCTGTACATTTTCCAATTGACAT 57.656 33.333 7.12 0.00 0.00 3.06
35 36 5.771469 CTGCTGTACATTTTCCAATTGACA 58.229 37.500 7.12 0.00 0.00 3.58
36 37 4.622740 GCTGCTGTACATTTTCCAATTGAC 59.377 41.667 7.12 0.00 0.00 3.18
37 38 4.321899 GGCTGCTGTACATTTTCCAATTGA 60.322 41.667 7.12 0.00 0.00 2.57
38 39 3.928375 GGCTGCTGTACATTTTCCAATTG 59.072 43.478 0.00 0.00 0.00 2.32
39 40 3.577848 TGGCTGCTGTACATTTTCCAATT 59.422 39.130 0.00 0.00 0.00 2.32
40 41 3.164268 TGGCTGCTGTACATTTTCCAAT 58.836 40.909 0.00 0.00 0.00 3.16
41 42 2.557924 CTGGCTGCTGTACATTTTCCAA 59.442 45.455 0.00 0.00 0.00 3.53
42 43 2.161855 CTGGCTGCTGTACATTTTCCA 58.838 47.619 0.00 1.58 0.00 3.53
43 44 1.474077 CCTGGCTGCTGTACATTTTCC 59.526 52.381 0.00 0.00 0.00 3.13
44 45 1.474077 CCCTGGCTGCTGTACATTTTC 59.526 52.381 0.00 0.00 0.00 2.29
45 46 1.549203 CCCTGGCTGCTGTACATTTT 58.451 50.000 0.00 0.00 0.00 1.82
46 47 0.323725 CCCCTGGCTGCTGTACATTT 60.324 55.000 0.00 0.00 0.00 2.32
47 48 1.207488 TCCCCTGGCTGCTGTACATT 61.207 55.000 0.00 0.00 0.00 2.71
48 49 1.207488 TTCCCCTGGCTGCTGTACAT 61.207 55.000 0.00 0.00 0.00 2.29
49 50 1.422977 TTTCCCCTGGCTGCTGTACA 61.423 55.000 0.00 0.00 0.00 2.90
50 51 0.960861 GTTTCCCCTGGCTGCTGTAC 60.961 60.000 0.00 0.00 0.00 2.90
51 52 1.378762 GTTTCCCCTGGCTGCTGTA 59.621 57.895 0.00 0.00 0.00 2.74
52 53 2.116125 GTTTCCCCTGGCTGCTGT 59.884 61.111 0.00 0.00 0.00 4.40
53 54 2.677875 GGTTTCCCCTGGCTGCTG 60.678 66.667 0.00 0.00 0.00 4.41
54 55 3.185203 TGGTTTCCCCTGGCTGCT 61.185 61.111 0.00 0.00 0.00 4.24
55 56 2.677875 CTGGTTTCCCCTGGCTGC 60.678 66.667 0.00 0.00 0.00 5.25
56 57 2.677875 GCTGGTTTCCCCTGGCTG 60.678 66.667 0.00 0.00 32.93 4.85
57 58 2.777960 TTGCTGGTTTCCCCTGGCT 61.778 57.895 0.00 0.00 34.99 4.75
58 59 2.203625 TTGCTGGTTTCCCCTGGC 60.204 61.111 0.00 0.00 34.67 4.85
59 60 0.758685 TTGTTGCTGGTTTCCCCTGG 60.759 55.000 0.00 0.00 32.93 4.45
60 61 1.341080 ATTGTTGCTGGTTTCCCCTG 58.659 50.000 0.00 0.00 35.34 4.45
61 62 2.101640 AATTGTTGCTGGTTTCCCCT 57.898 45.000 0.00 0.00 0.00 4.79
62 63 2.877786 CAAAATTGTTGCTGGTTTCCCC 59.122 45.455 0.00 0.00 0.00 4.81
63 64 3.802866 TCAAAATTGTTGCTGGTTTCCC 58.197 40.909 0.00 0.00 0.00 3.97
64 65 4.692228 TCTCAAAATTGTTGCTGGTTTCC 58.308 39.130 0.00 0.00 0.00 3.13
65 66 6.313658 AGTTTCTCAAAATTGTTGCTGGTTTC 59.686 34.615 0.00 0.00 0.00 2.78
66 67 6.092533 CAGTTTCTCAAAATTGTTGCTGGTTT 59.907 34.615 0.00 0.00 29.96 3.27
67 68 5.581874 CAGTTTCTCAAAATTGTTGCTGGTT 59.418 36.000 0.00 0.00 29.96 3.67
68 69 5.111293 CAGTTTCTCAAAATTGTTGCTGGT 58.889 37.500 0.00 0.00 29.96 4.00
69 70 4.508861 CCAGTTTCTCAAAATTGTTGCTGG 59.491 41.667 0.00 0.00 31.96 4.85
70 71 4.508861 CCCAGTTTCTCAAAATTGTTGCTG 59.491 41.667 0.00 0.00 31.96 4.41
71 72 4.443315 CCCCAGTTTCTCAAAATTGTTGCT 60.443 41.667 0.00 0.00 31.96 3.91
72 73 3.809279 CCCCAGTTTCTCAAAATTGTTGC 59.191 43.478 0.00 0.00 31.96 4.17
73 74 4.379652 CCCCCAGTTTCTCAAAATTGTTG 58.620 43.478 0.00 0.00 31.96 3.33
74 75 4.687901 CCCCCAGTTTCTCAAAATTGTT 57.312 40.909 0.00 0.00 31.96 2.83
94 95 1.604147 CTGAACGGGGCCAAATTCCC 61.604 60.000 4.39 0.00 43.15 3.97
95 96 1.890174 CTGAACGGGGCCAAATTCC 59.110 57.895 4.39 0.00 0.00 3.01
96 97 1.215382 GCTGAACGGGGCCAAATTC 59.785 57.895 4.39 6.28 0.00 2.17
97 98 1.228862 AGCTGAACGGGGCCAAATT 60.229 52.632 4.39 0.00 0.00 1.82
98 99 1.678970 GAGCTGAACGGGGCCAAAT 60.679 57.895 4.39 0.00 0.00 2.32
99 100 2.282180 GAGCTGAACGGGGCCAAA 60.282 61.111 4.39 0.00 0.00 3.28
100 101 4.344865 GGAGCTGAACGGGGCCAA 62.345 66.667 4.39 0.00 0.00 4.52
102 103 3.645268 ATTGGAGCTGAACGGGGCC 62.645 63.158 0.00 0.00 0.00 5.80
103 104 2.044946 ATTGGAGCTGAACGGGGC 60.045 61.111 0.00 0.00 0.00 5.80
104 105 0.609131 AACATTGGAGCTGAACGGGG 60.609 55.000 0.00 0.00 0.00 5.73
105 106 1.068333 CAAACATTGGAGCTGAACGGG 60.068 52.381 0.00 0.00 0.00 5.28
106 107 1.666888 GCAAACATTGGAGCTGAACGG 60.667 52.381 0.00 0.00 0.00 4.44
107 108 1.666888 GGCAAACATTGGAGCTGAACG 60.667 52.381 0.00 0.00 0.00 3.95
108 109 1.615392 AGGCAAACATTGGAGCTGAAC 59.385 47.619 0.00 0.00 0.00 3.18
109 110 1.614903 CAGGCAAACATTGGAGCTGAA 59.385 47.619 0.00 0.00 0.00 3.02
110 111 1.250328 CAGGCAAACATTGGAGCTGA 58.750 50.000 0.00 0.00 0.00 4.26
111 112 0.963962 ACAGGCAAACATTGGAGCTG 59.036 50.000 0.00 0.00 0.00 4.24
112 113 0.963962 CACAGGCAAACATTGGAGCT 59.036 50.000 0.00 0.00 0.00 4.09
113 114 0.668401 GCACAGGCAAACATTGGAGC 60.668 55.000 0.00 0.00 40.72 4.70
114 115 0.037975 GGCACAGGCAAACATTGGAG 60.038 55.000 0.00 0.00 43.71 3.86
115 116 1.470996 GGGCACAGGCAAACATTGGA 61.471 55.000 0.00 0.00 43.71 3.53
116 117 1.004679 GGGCACAGGCAAACATTGG 60.005 57.895 0.00 0.00 43.71 3.16
117 118 0.320073 CTGGGCACAGGCAAACATTG 60.320 55.000 8.54 0.00 43.71 2.82
118 119 2.051941 CTGGGCACAGGCAAACATT 58.948 52.632 8.54 0.00 43.71 2.71
119 120 2.576832 GCTGGGCACAGGCAAACAT 61.577 57.895 19.71 0.00 45.04 2.71
120 121 3.225798 GCTGGGCACAGGCAAACA 61.226 61.111 19.71 0.00 45.04 2.83
121 122 2.795110 TTGCTGGGCACAGGCAAAC 61.795 57.895 19.71 0.02 45.04 2.93
122 123 2.443577 TTGCTGGGCACAGGCAAA 60.444 55.556 19.71 4.89 45.04 3.68
123 124 3.225798 GTTGCTGGGCACAGGCAA 61.226 61.111 19.71 18.73 45.04 4.52
124 125 4.519612 TGTTGCTGGGCACAGGCA 62.520 61.111 19.71 13.54 45.04 4.75
125 126 2.103339 AATTGTTGCTGGGCACAGGC 62.103 55.000 19.71 10.82 45.04 4.85
126 127 0.393820 AAATTGTTGCTGGGCACAGG 59.606 50.000 19.71 0.00 45.04 4.00
128 129 2.557924 CTCTAAATTGTTGCTGGGCACA 59.442 45.455 0.00 0.00 38.71 4.57
129 130 2.819608 TCTCTAAATTGTTGCTGGGCAC 59.180 45.455 0.00 0.00 38.71 5.01
130 131 3.153369 TCTCTAAATTGTTGCTGGGCA 57.847 42.857 0.00 0.00 36.47 5.36
131 132 4.021981 ACTTTCTCTAAATTGTTGCTGGGC 60.022 41.667 0.00 0.00 0.00 5.36
132 133 5.712152 ACTTTCTCTAAATTGTTGCTGGG 57.288 39.130 0.00 0.00 0.00 4.45
133 134 6.738114 TCAACTTTCTCTAAATTGTTGCTGG 58.262 36.000 0.00 0.00 33.77 4.85
134 135 7.642669 TCTCAACTTTCTCTAAATTGTTGCTG 58.357 34.615 0.00 0.00 33.77 4.41
135 136 7.807977 TCTCAACTTTCTCTAAATTGTTGCT 57.192 32.000 0.00 0.00 33.77 3.91
136 137 8.746751 GTTTCTCAACTTTCTCTAAATTGTTGC 58.253 33.333 0.00 0.00 33.77 4.17
139 140 9.396022 TCAGTTTCTCAACTTTCTCTAAATTGT 57.604 29.630 0.00 0.00 40.66 2.71
142 143 8.841300 GGTTCAGTTTCTCAACTTTCTCTAAAT 58.159 33.333 0.00 0.00 40.66 1.40
143 144 7.827236 TGGTTCAGTTTCTCAACTTTCTCTAAA 59.173 33.333 0.00 0.00 40.66 1.85
144 145 7.335627 TGGTTCAGTTTCTCAACTTTCTCTAA 58.664 34.615 0.00 0.00 40.66 2.10
145 146 6.884832 TGGTTCAGTTTCTCAACTTTCTCTA 58.115 36.000 0.00 0.00 40.66 2.43
146 147 5.745227 TGGTTCAGTTTCTCAACTTTCTCT 58.255 37.500 0.00 0.00 40.66 3.10
147 148 6.625873 ATGGTTCAGTTTCTCAACTTTCTC 57.374 37.500 0.00 0.00 40.66 2.87
148 149 6.238484 CGAATGGTTCAGTTTCTCAACTTTCT 60.238 38.462 0.00 0.00 40.66 2.52
149 150 5.909610 CGAATGGTTCAGTTTCTCAACTTTC 59.090 40.000 0.00 0.00 40.66 2.62
150 151 5.221048 CCGAATGGTTCAGTTTCTCAACTTT 60.221 40.000 0.00 0.00 40.66 2.66
151 152 4.275936 CCGAATGGTTCAGTTTCTCAACTT 59.724 41.667 0.00 0.00 40.66 2.66
152 153 3.815401 CCGAATGGTTCAGTTTCTCAACT 59.185 43.478 0.00 0.00 44.72 3.16
153 154 3.609409 GCCGAATGGTTCAGTTTCTCAAC 60.609 47.826 0.00 0.00 37.67 3.18
154 155 2.552315 GCCGAATGGTTCAGTTTCTCAA 59.448 45.455 0.00 0.00 37.67 3.02
155 156 2.151202 GCCGAATGGTTCAGTTTCTCA 58.849 47.619 0.00 0.00 37.67 3.27
156 157 1.468914 GGCCGAATGGTTCAGTTTCTC 59.531 52.381 0.00 0.00 37.67 2.87
157 158 1.534729 GGCCGAATGGTTCAGTTTCT 58.465 50.000 0.00 0.00 37.67 2.52
158 159 0.526211 GGGCCGAATGGTTCAGTTTC 59.474 55.000 0.00 0.00 37.67 2.78
159 160 0.898326 GGGGCCGAATGGTTCAGTTT 60.898 55.000 0.00 0.00 37.67 2.66
160 161 1.304134 GGGGCCGAATGGTTCAGTT 60.304 57.895 0.00 0.00 37.67 3.16
161 162 2.075355 TTGGGGCCGAATGGTTCAGT 62.075 55.000 0.00 0.00 37.67 3.41
162 163 0.684153 ATTGGGGCCGAATGGTTCAG 60.684 55.000 13.40 0.00 37.67 3.02
163 164 0.969917 CATTGGGGCCGAATGGTTCA 60.970 55.000 27.88 2.06 37.67 3.18
164 165 1.815866 CATTGGGGCCGAATGGTTC 59.184 57.895 27.88 0.00 37.67 3.62
165 166 2.358372 GCATTGGGGCCGAATGGTT 61.358 57.895 33.33 4.91 37.67 3.67
166 167 2.759560 GCATTGGGGCCGAATGGT 60.760 61.111 33.33 5.27 37.67 3.55
167 168 1.616091 AAAGCATTGGGGCCGAATGG 61.616 55.000 33.33 19.80 38.77 3.16
168 169 1.110442 TAAAGCATTGGGGCCGAATG 58.890 50.000 30.24 30.24 34.47 2.67
169 170 1.963515 GATAAAGCATTGGGGCCGAAT 59.036 47.619 8.09 8.09 0.00 3.34
170 171 1.064017 AGATAAAGCATTGGGGCCGAA 60.064 47.619 2.61 2.61 0.00 4.30
171 172 0.550914 AGATAAAGCATTGGGGCCGA 59.449 50.000 0.00 0.00 0.00 5.54
172 173 0.670162 CAGATAAAGCATTGGGGCCG 59.330 55.000 0.00 0.00 0.00 6.13
173 174 1.780503 ACAGATAAAGCATTGGGGCC 58.219 50.000 0.00 0.00 0.00 5.80
174 175 3.893326 AAACAGATAAAGCATTGGGGC 57.107 42.857 0.00 0.00 0.00 5.80
175 176 3.934579 GCAAAACAGATAAAGCATTGGGG 59.065 43.478 0.00 0.00 0.00 4.96
176 177 3.934579 GGCAAAACAGATAAAGCATTGGG 59.065 43.478 0.00 0.00 0.00 4.12
177 178 4.389687 GTGGCAAAACAGATAAAGCATTGG 59.610 41.667 0.00 0.00 0.00 3.16
178 179 4.389687 GGTGGCAAAACAGATAAAGCATTG 59.610 41.667 0.00 0.00 0.00 2.82
179 180 4.040217 TGGTGGCAAAACAGATAAAGCATT 59.960 37.500 0.00 0.00 0.00 3.56
180 181 3.577848 TGGTGGCAAAACAGATAAAGCAT 59.422 39.130 0.00 0.00 0.00 3.79
181 182 2.961741 TGGTGGCAAAACAGATAAAGCA 59.038 40.909 0.00 0.00 0.00 3.91
182 183 3.317150 GTGGTGGCAAAACAGATAAAGC 58.683 45.455 0.00 0.00 0.00 3.51
183 184 3.004315 ACGTGGTGGCAAAACAGATAAAG 59.996 43.478 0.00 0.00 0.00 1.85
184 185 2.952978 ACGTGGTGGCAAAACAGATAAA 59.047 40.909 0.00 0.00 0.00 1.40
185 186 2.292016 CACGTGGTGGCAAAACAGATAA 59.708 45.455 7.95 0.00 0.00 1.75
186 187 1.876799 CACGTGGTGGCAAAACAGATA 59.123 47.619 7.95 0.00 0.00 1.98
187 188 0.667993 CACGTGGTGGCAAAACAGAT 59.332 50.000 7.95 0.00 0.00 2.90
188 189 0.678366 ACACGTGGTGGCAAAACAGA 60.678 50.000 21.57 0.00 37.94 3.41
189 190 0.172352 AACACGTGGTGGCAAAACAG 59.828 50.000 21.57 0.00 37.94 3.16
190 191 0.109086 CAACACGTGGTGGCAAAACA 60.109 50.000 26.09 0.00 37.94 2.83
191 192 0.109039 ACAACACGTGGTGGCAAAAC 60.109 50.000 35.00 0.00 37.94 2.43
192 193 0.603569 AACAACACGTGGTGGCAAAA 59.396 45.000 35.00 0.00 37.94 2.44
193 194 0.109086 CAACAACACGTGGTGGCAAA 60.109 50.000 35.00 0.00 41.68 3.68
194 195 1.508545 CAACAACACGTGGTGGCAA 59.491 52.632 35.00 0.00 41.68 4.52
195 196 3.191836 CAACAACACGTGGTGGCA 58.808 55.556 35.00 0.00 41.68 4.92
199 200 1.800032 CAGCACAACAACACGTGGT 59.200 52.632 21.57 11.47 44.23 4.16
200 201 1.586042 GCAGCACAACAACACGTGG 60.586 57.895 21.57 5.28 33.62 4.94
201 202 0.655208 TAGCAGCACAACAACACGTG 59.345 50.000 15.48 15.48 36.18 4.49
202 203 1.374560 TTAGCAGCACAACAACACGT 58.625 45.000 0.00 0.00 0.00 4.49
203 204 2.108700 GTTTAGCAGCACAACAACACG 58.891 47.619 0.00 0.00 0.00 4.49
204 205 3.143807 TGTTTAGCAGCACAACAACAC 57.856 42.857 6.89 0.00 0.00 3.32
205 206 4.383850 AATGTTTAGCAGCACAACAACA 57.616 36.364 12.19 5.66 34.19 3.33
206 207 4.566360 ACAAATGTTTAGCAGCACAACAAC 59.434 37.500 12.19 0.64 34.19 3.32
207 208 4.753233 ACAAATGTTTAGCAGCACAACAA 58.247 34.783 12.19 0.00 34.19 2.83
208 209 4.383850 ACAAATGTTTAGCAGCACAACA 57.616 36.364 10.90 10.90 34.97 3.33
209 210 6.089417 GGAATACAAATGTTTAGCAGCACAAC 59.911 38.462 0.00 0.00 0.00 3.32
210 211 6.155827 GGAATACAAATGTTTAGCAGCACAA 58.844 36.000 0.00 0.00 0.00 3.33
211 212 5.336372 GGGAATACAAATGTTTAGCAGCACA 60.336 40.000 0.00 0.00 0.00 4.57
212 213 5.102313 GGGAATACAAATGTTTAGCAGCAC 58.898 41.667 0.00 0.00 0.00 4.40
213 214 4.769488 TGGGAATACAAATGTTTAGCAGCA 59.231 37.500 0.00 0.00 0.00 4.41
214 215 5.125417 TCTGGGAATACAAATGTTTAGCAGC 59.875 40.000 0.00 0.00 0.00 5.25
215 216 6.757897 TCTGGGAATACAAATGTTTAGCAG 57.242 37.500 0.00 0.00 0.00 4.24
216 217 7.716799 AATCTGGGAATACAAATGTTTAGCA 57.283 32.000 0.00 0.00 0.00 3.49
217 218 9.435688 AAAAATCTGGGAATACAAATGTTTAGC 57.564 29.630 0.00 0.00 0.00 3.09
241 242 1.286354 CGCCGTAGCTCCGTCAAAAA 61.286 55.000 0.00 0.00 36.60 1.94
242 243 1.735198 CGCCGTAGCTCCGTCAAAA 60.735 57.895 0.00 0.00 36.60 2.44
243 244 2.126228 CGCCGTAGCTCCGTCAAA 60.126 61.111 0.00 0.00 36.60 2.69
244 245 4.124351 CCGCCGTAGCTCCGTCAA 62.124 66.667 0.00 0.00 36.60 3.18
249 250 3.534056 TAAGCCCGCCGTAGCTCC 61.534 66.667 0.00 0.00 38.74 4.70
250 251 2.279318 GTAAGCCCGCCGTAGCTC 60.279 66.667 0.00 0.00 38.74 4.09
251 252 4.203076 CGTAAGCCCGCCGTAGCT 62.203 66.667 0.00 0.00 42.40 3.32
263 264 2.818274 GGTTCAGGCCGGCGTAAG 60.818 66.667 23.15 10.93 43.44 2.34
264 265 2.472414 AATGGTTCAGGCCGGCGTAA 62.472 55.000 23.15 12.08 0.00 3.18
265 266 2.472414 AAATGGTTCAGGCCGGCGTA 62.472 55.000 23.15 6.11 0.00 4.42
266 267 3.860930 AAATGGTTCAGGCCGGCGT 62.861 57.895 22.54 20.09 0.00 5.68
267 268 3.051392 GAAATGGTTCAGGCCGGCG 62.051 63.158 22.54 7.85 33.61 6.46
268 269 1.976474 TGAAATGGTTCAGGCCGGC 60.976 57.895 21.18 21.18 38.88 6.13
269 270 4.413928 TGAAATGGTTCAGGCCGG 57.586 55.556 0.00 0.00 38.88 6.13
275 276 9.411189 TCAATGAATATCATCTGAAATGGTTCA 57.589 29.630 0.00 0.00 37.49 3.18
276 277 9.894783 CTCAATGAATATCATCTGAAATGGTTC 57.105 33.333 0.00 0.00 35.76 3.62
277 278 8.358148 GCTCAATGAATATCATCTGAAATGGTT 58.642 33.333 0.00 0.00 35.76 3.67
278 279 7.504574 TGCTCAATGAATATCATCTGAAATGGT 59.495 33.333 0.00 0.00 35.76 3.55
279 280 7.882179 TGCTCAATGAATATCATCTGAAATGG 58.118 34.615 0.00 0.00 35.76 3.16
280 281 7.539022 GCTGCTCAATGAATATCATCTGAAATG 59.461 37.037 0.00 0.00 35.76 2.32
281 282 7.230712 TGCTGCTCAATGAATATCATCTGAAAT 59.769 33.333 0.00 0.00 35.76 2.17
282 283 6.544564 TGCTGCTCAATGAATATCATCTGAAA 59.455 34.615 0.00 0.00 35.76 2.69
283 284 6.059484 TGCTGCTCAATGAATATCATCTGAA 58.941 36.000 0.00 0.00 35.76 3.02
284 285 5.617252 TGCTGCTCAATGAATATCATCTGA 58.383 37.500 0.00 0.67 35.76 3.27
285 286 5.941948 TGCTGCTCAATGAATATCATCTG 57.058 39.130 0.00 0.00 35.76 2.90
298 299 1.456296 GTCCATGTGATGCTGCTCAA 58.544 50.000 0.00 0.00 0.00 3.02
337 338 3.008375 AGCCTCACTGCAGTAAATTCTCA 59.992 43.478 21.20 0.00 0.00 3.27
368 369 5.070685 GGAGAAACAAGGTACACCAGAAAT 58.929 41.667 0.38 0.00 38.89 2.17
372 373 3.485463 TGGAGAAACAAGGTACACCAG 57.515 47.619 0.38 0.00 38.89 4.00
374 375 5.070685 AGAAATGGAGAAACAAGGTACACC 58.929 41.667 0.00 0.00 0.00 4.16
375 376 6.486993 AGAAGAAATGGAGAAACAAGGTACAC 59.513 38.462 0.00 0.00 0.00 2.90
381 382 8.097662 AGGTAGTAGAAGAAATGGAGAAACAAG 58.902 37.037 0.00 0.00 0.00 3.16
388 389 8.578151 GGTACATAGGTAGTAGAAGAAATGGAG 58.422 40.741 0.00 0.00 0.00 3.86
431 432 3.263261 GGGAAACCGAAAAGTTTGCAAA 58.737 40.909 8.05 8.05 46.41 3.68
433 434 2.588027 GGGAAACCGAAAAGTTTGCA 57.412 45.000 10.18 0.00 46.41 4.08
461 462 0.531974 AGAAAGCGCGTCAAACCTCA 60.532 50.000 8.43 0.00 0.00 3.86
465 466 1.663494 CAAGAGAAAGCGCGTCAAAC 58.337 50.000 8.43 7.20 0.00 2.93
472 473 1.265365 ACTTTGAGCAAGAGAAAGCGC 59.735 47.619 0.00 0.00 36.21 5.92
475 476 5.525378 ACACACTACTTTGAGCAAGAGAAAG 59.475 40.000 0.00 0.00 36.21 2.62
518 521 1.153765 GCGCCCTTCCAAATCTTGC 60.154 57.895 0.00 0.00 0.00 4.01
528 531 3.909086 AAGTCTGCAGGCGCCCTTC 62.909 63.158 26.15 13.31 37.32 3.46
543 546 1.980772 GGATGCCAGCTTGCCAAGT 60.981 57.895 7.41 0.00 0.00 3.16
553 556 2.821366 GCCGTCACAGGATGCCAG 60.821 66.667 0.00 0.00 42.53 4.85
564 567 2.933492 GCCAAGTATTGTACAGCCGTCA 60.933 50.000 0.00 0.00 46.99 4.35
671 710 5.554437 TTTCCCCATTTTTGTTAACCTCC 57.446 39.130 2.48 0.00 0.00 4.30
675 714 5.529060 TGCACATTTCCCCATTTTTGTTAAC 59.471 36.000 0.00 0.00 0.00 2.01
680 719 4.213906 GTCTTGCACATTTCCCCATTTTTG 59.786 41.667 0.00 0.00 0.00 2.44
681 720 4.141528 TGTCTTGCACATTTCCCCATTTTT 60.142 37.500 0.00 0.00 0.00 1.94
682 721 3.390639 TGTCTTGCACATTTCCCCATTTT 59.609 39.130 0.00 0.00 0.00 1.82
683 722 2.971330 TGTCTTGCACATTTCCCCATTT 59.029 40.909 0.00 0.00 0.00 2.32
686 725 2.170166 GATGTCTTGCACATTTCCCCA 58.830 47.619 0.00 0.00 46.53 4.96
687 726 1.478105 GGATGTCTTGCACATTTCCCC 59.522 52.381 0.00 0.00 46.53 4.81
734 774 0.383491 CAAAGAAGCACACACGCGAG 60.383 55.000 15.93 7.88 36.85 5.03
921 981 1.846439 CTATGCTGGGAAAGGGAAGGA 59.154 52.381 0.00 0.00 0.00 3.36
922 982 1.566231 ACTATGCTGGGAAAGGGAAGG 59.434 52.381 0.00 0.00 0.00 3.46
936 996 2.293170 GAGAAGGCCCAAGAACTATGC 58.707 52.381 0.00 0.00 0.00 3.14
962 1022 2.345244 CACCAGGCTCGCTGAAGT 59.655 61.111 0.00 0.00 0.00 3.01
966 1026 3.947132 CTCACCACCAGGCTCGCTG 62.947 68.421 0.00 0.00 39.06 5.18
1377 1560 0.324368 TGACGTACTCCCAGATGCCT 60.324 55.000 0.00 0.00 0.00 4.75
1546 1734 7.715249 TCTTTTTCAGTTTCACAGCTAGTACAT 59.285 33.333 0.00 0.00 0.00 2.29
1547 1735 7.045416 TCTTTTTCAGTTTCACAGCTAGTACA 58.955 34.615 0.00 0.00 0.00 2.90
1551 1739 8.862550 ATTTTCTTTTTCAGTTTCACAGCTAG 57.137 30.769 0.00 0.00 0.00 3.42
1620 1808 2.025359 GAGCGCCGAAATCAACCTCG 62.025 60.000 2.29 0.00 34.83 4.63
1819 2007 8.425577 ACCAGTCTGTTAATTTCGATAATCTG 57.574 34.615 0.00 0.00 0.00 2.90
2014 2218 2.293399 GGCACCCTAGATTTTTATGCCG 59.707 50.000 0.00 0.00 41.53 5.69
2029 2236 1.066215 CCTTAGGCATTTTTGGCACCC 60.066 52.381 2.29 0.00 36.76 4.61
2053 2269 5.716228 TGAAATCTGCAGGACCATTGTAAAT 59.284 36.000 15.13 0.00 0.00 1.40
2133 2366 7.689299 TGGAGAACTTCAGATAGGAAATTCAA 58.311 34.615 0.00 0.00 35.94 2.69
2471 2726 5.505159 CGGCTACGATCACAGTGTAAATAGA 60.505 44.000 0.00 0.00 44.60 1.98
2552 2808 6.552445 ATCTGGTATCAGTCTTGTTAGCTT 57.448 37.500 2.20 0.00 41.59 3.74
2830 3471 6.660949 CCCTCTAGAATGTCAAGAATTTTGGT 59.339 38.462 0.00 0.00 0.00 3.67
2977 3623 1.972795 AGCTGTGATTGGTGGCAAAAT 59.027 42.857 0.00 0.00 0.00 1.82
2998 3644 8.210946 CAGGAAGATCATTTAGGGTGTAACATA 58.789 37.037 0.00 0.00 39.98 2.29
3003 3649 5.724370 TGTCAGGAAGATCATTTAGGGTGTA 59.276 40.000 0.00 0.00 0.00 2.90
3270 3940 2.556144 TCTCTTTGCTGCATCACACT 57.444 45.000 1.84 0.00 0.00 3.55
3493 4163 4.697352 AGGAACTTACATGTGTTCATCTGC 59.303 41.667 23.11 10.78 42.91 4.26
3731 4457 0.689055 ACTGTGCAGCATTCAGGAGA 59.311 50.000 15.52 0.00 34.02 3.71
3845 4579 0.318107 CGTTACGGACACGGTCAGTT 60.318 55.000 13.05 1.84 46.48 3.16
3866 4600 2.028476 TGCAATGTAACGGTACAGCTCT 60.028 45.455 19.59 0.00 43.42 4.09
3921 4655 5.779806 TCGAGCAATTAGTTTTGTAGCTC 57.220 39.130 0.00 0.00 42.50 4.09
4311 7285 8.789285 GGAAGACCATTCCTGAGGTAGGATAAA 61.789 44.444 12.21 0.00 44.62 1.40
4371 7367 0.179076 TCCATGTGTAGCTGCCATCG 60.179 55.000 0.00 0.00 0.00 3.84
4539 7535 0.393944 CTGGCCACTGCATCAGATGT 60.394 55.000 0.00 0.00 40.13 3.06
4590 7586 2.179427 TGGTCATTGATCGTCAGACCT 58.821 47.619 20.19 0.00 40.43 3.85
4627 7624 1.202722 GGGACGGTCTTCACCTGAAAA 60.203 52.381 8.23 0.00 41.17 2.29
4699 7705 1.722011 CCACGATTTGGTTACGCTCT 58.278 50.000 0.00 0.00 41.10 4.09
4850 7858 0.889306 ACCGAGCAGTGACTAACCTC 59.111 55.000 0.00 0.00 0.00 3.85
4864 7872 2.933056 GCTGGAAGGAAGAAGAACCGAG 60.933 54.545 0.00 0.00 0.00 4.63
4914 7922 8.803201 TCGATCTAATATAGCACTTTTCACTG 57.197 34.615 0.00 0.00 0.00 3.66
4920 7928 6.312426 GCATGCTCGATCTAATATAGCACTTT 59.688 38.462 11.37 0.00 45.18 2.66
4921 7929 5.809562 GCATGCTCGATCTAATATAGCACTT 59.190 40.000 11.37 0.00 45.18 3.16
4925 7933 4.205996 CACGCATGCTCGATCTAATATAGC 59.794 45.833 17.13 0.00 0.00 2.97
4941 7949 0.592637 TTCAAAGGTCAGCACGCATG 59.407 50.000 0.00 0.00 0.00 4.06
4942 7950 1.200716 CATTCAAAGGTCAGCACGCAT 59.799 47.619 0.00 0.00 0.00 4.73
4943 7951 0.592637 CATTCAAAGGTCAGCACGCA 59.407 50.000 0.00 0.00 0.00 5.24
4944 7952 0.730494 GCATTCAAAGGTCAGCACGC 60.730 55.000 0.00 0.00 0.00 5.34
4945 7953 0.877071 AGCATTCAAAGGTCAGCACG 59.123 50.000 0.00 0.00 0.00 5.34
4946 7954 2.938869 GAAGCATTCAAAGGTCAGCAC 58.061 47.619 0.00 0.00 46.62 4.40
4965 7973 6.778821 TCATCCTGAGAACACAAATAAAGGA 58.221 36.000 0.00 0.00 37.02 3.36
4971 7979 4.946157 GGTCATCATCCTGAGAACACAAAT 59.054 41.667 0.00 0.00 0.00 2.32
4979 7988 1.126488 GGCTGGTCATCATCCTGAGA 58.874 55.000 0.00 0.00 0.00 3.27
5021 8030 4.794278 TCTGTAGCCGTTCTGTTCATAA 57.206 40.909 0.00 0.00 0.00 1.90
5051 8060 3.944015 GCATCTTGCTCCAGAGTACAATT 59.056 43.478 0.00 0.00 40.96 2.32
5096 8107 5.125356 CCAATCACTTCACACTATGCCATA 58.875 41.667 0.00 0.00 0.00 2.74
5100 8111 3.753272 ACACCAATCACTTCACACTATGC 59.247 43.478 0.00 0.00 0.00 3.14
5111 8122 3.243359 ACAAATCCCACACCAATCACT 57.757 42.857 0.00 0.00 0.00 3.41
5140 8151 4.333649 CGATGCAATAAAGATCCACACACT 59.666 41.667 0.00 0.00 0.00 3.55
5251 8262 2.932614 CCTTGTGCCAAGTAGATTCTCG 59.067 50.000 12.18 0.00 0.00 4.04
5265 8276 7.277760 AGTTTGTTAAAATTTGAGACCTTGTGC 59.722 33.333 0.00 0.00 0.00 4.57
5317 8328 1.875963 CGGGGCGGATAATGATTGC 59.124 57.895 0.00 0.00 0.00 3.56
5411 8426 2.542020 TGTTGTCTTCAGCGATTCCA 57.458 45.000 0.00 0.00 0.00 3.53
5459 8474 2.885135 TACAACTGTCTCCCGGTAGA 57.115 50.000 0.00 0.00 30.42 2.59
5464 8479 4.695455 ACATTGATTTACAACTGTCTCCCG 59.305 41.667 0.00 0.00 41.52 5.14
5465 8480 7.865706 ATACATTGATTTACAACTGTCTCCC 57.134 36.000 0.00 0.00 41.52 4.30
5486 8501 4.519540 AATGTGTTTGGCTGGTCAATAC 57.480 40.909 0.00 0.00 0.00 1.89
5568 8583 1.553704 CCTAGAAGGGTGCTACGGTTT 59.446 52.381 0.00 0.00 0.00 3.27
5575 8590 0.980231 CTCTGGCCTAGAAGGGTGCT 60.980 60.000 3.32 0.00 35.37 4.40
5732 8748 2.032302 CGTGACGATGGTTTTGGTTTCA 59.968 45.455 0.00 0.00 0.00 2.69
5735 8751 0.309612 GCGTGACGATGGTTTTGGTT 59.690 50.000 10.10 0.00 0.00 3.67
5736 8752 1.512156 GGCGTGACGATGGTTTTGGT 61.512 55.000 10.10 0.00 0.00 3.67
5790 8807 8.461249 ACAAATCCTTCCTGAAATATCTCATG 57.539 34.615 0.00 0.00 0.00 3.07
5795 8812 9.578439 CTGAAAACAAATCCTTCCTGAAATATC 57.422 33.333 0.00 0.00 0.00 1.63
5860 8877 6.207025 ACTTGAGGTTACACTCTGTAGTACTG 59.793 42.308 5.39 1.05 38.32 2.74
5866 8883 3.895656 AGCACTTGAGGTTACACTCTGTA 59.104 43.478 0.00 0.00 38.32 2.74
5867 8884 2.700897 AGCACTTGAGGTTACACTCTGT 59.299 45.455 0.00 0.00 38.32 3.41
5894 8911 6.090483 AGTAGTAATGGTGATGAATCGAGG 57.910 41.667 0.00 0.00 0.00 4.63
5931 8948 7.053316 TGTGAATTTTTCATCTGGTCATTGT 57.947 32.000 0.00 0.00 42.47 2.71
5950 8967 7.544566 GTCTATGTCTTCCGTAATCTTTGTGAA 59.455 37.037 0.00 0.00 0.00 3.18
5979 8997 6.401047 ACAGGATGATTATGCCATTTTCTG 57.599 37.500 0.00 0.00 39.69 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.