Multiple sequence alignment - TraesCS2B01G424200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G424200 chr2B 100.000 6808 0 0 1 6808 610409048 610415855 0.000000e+00 12573.0
1 TraesCS2B01G424200 chr2B 77.857 280 44 12 20 283 29012856 29013133 2.540000e-34 158.0
2 TraesCS2B01G424200 chr2B 100.000 47 0 0 6154 6200 46076390 46076436 3.380000e-13 87.9
3 TraesCS2B01G424200 chr2D 95.035 4673 158 33 913 5548 518258740 518263375 0.000000e+00 7276.0
4 TraesCS2B01G424200 chr2D 91.269 607 42 5 5553 6151 518264075 518264678 0.000000e+00 817.0
5 TraesCS2B01G424200 chr2D 83.333 618 71 19 2 594 518257844 518258454 6.010000e-150 542.0
6 TraesCS2B01G424200 chr2D 90.909 330 15 5 6492 6808 518265021 518265348 4.880000e-116 429.0
7 TraesCS2B01G424200 chr2D 89.457 313 29 3 6202 6512 518264695 518265005 6.400000e-105 392.0
8 TraesCS2B01G424200 chr2D 80.986 426 61 13 500 912 518258293 518258711 3.060000e-83 320.0
9 TraesCS2B01G424200 chr2D 77.371 464 67 22 183 628 39475534 39475977 2.450000e-59 241.0
10 TraesCS2B01G424200 chr2D 82.407 216 29 9 116 326 18184806 18185017 5.420000e-41 180.0
11 TraesCS2B01G424200 chr2D 100.000 46 0 0 6155 6200 505643045 505643000 1.220000e-12 86.1
12 TraesCS2B01G424200 chr2A 94.094 4741 155 50 915 5592 662332637 662337315 0.000000e+00 7088.0
13 TraesCS2B01G424200 chr2A 86.200 500 46 12 437 918 662332119 662332613 2.810000e-143 520.0
14 TraesCS2B01G424200 chr2A 84.200 481 36 19 5674 6140 662337314 662337768 1.360000e-116 431.0
15 TraesCS2B01G424200 chr2A 87.898 314 14 7 6515 6808 662338199 662338508 1.410000e-91 348.0
16 TraesCS2B01G424200 chr2A 84.158 101 12 3 20 117 630947469 630947370 2.020000e-15 95.3
17 TraesCS2B01G424200 chr2A 100.000 47 0 0 6156 6202 60760681 60760635 3.380000e-13 87.9
18 TraesCS2B01G424200 chr7A 80.639 563 78 21 115 659 598907502 598908051 2.290000e-109 407.0
19 TraesCS2B01G424200 chr7A 83.761 117 15 3 8 122 75067805 75067919 2.600000e-19 108.0
20 TraesCS2B01G424200 chr7A 83.178 107 12 5 26 131 658202657 658202758 7.270000e-15 93.5
21 TraesCS2B01G424200 chr7A 100.000 48 0 0 6155 6202 6966465 6966512 9.400000e-14 89.8
22 TraesCS2B01G424200 chr4B 77.373 769 121 35 25 749 181192302 181191543 2.290000e-109 407.0
23 TraesCS2B01G424200 chr4B 72.222 738 122 57 120 830 473554557 473553876 4.250000e-32 150.0
24 TraesCS2B01G424200 chr6D 81.321 530 61 21 344 867 413083776 413084273 4.950000e-106 396.0
25 TraesCS2B01G424200 chr6D 95.122 41 2 0 6316 6356 296688653 296688693 1.580000e-06 65.8
26 TraesCS2B01G424200 chr4D 76.946 681 103 40 200 867 85858153 85858792 8.460000e-89 339.0
27 TraesCS2B01G424200 chr4D 80.734 109 17 4 9 115 430894777 430894671 1.570000e-11 82.4
28 TraesCS2B01G424200 chr6A 77.834 591 85 28 14 566 585496210 585495628 2.370000e-84 324.0
29 TraesCS2B01G424200 chr6A 81.865 193 21 11 595 777 552583354 552583542 4.250000e-32 150.0
30 TraesCS2B01G424200 chr6A 100.000 32 0 0 6316 6347 30379576 30379607 7.370000e-05 60.2
31 TraesCS2B01G424200 chr1D 77.756 508 78 24 174 660 106512585 106513078 5.200000e-71 279.0
32 TraesCS2B01G424200 chr7D 76.685 549 92 25 2 522 422591720 422591180 8.700000e-69 272.0
33 TraesCS2B01G424200 chr7D 73.516 657 122 39 32 665 59394969 59394342 1.160000e-47 202.0
34 TraesCS2B01G424200 chr3D 76.697 442 80 20 387 822 123488853 123489277 2.470000e-54 224.0
35 TraesCS2B01G424200 chr3D 100.000 47 0 0 6155 6201 375873455 375873501 3.380000e-13 87.9
36 TraesCS2B01G424200 chr5B 76.617 402 68 23 396 786 480741376 480740990 1.500000e-46 198.0
37 TraesCS2B01G424200 chr5B 81.019 216 31 10 116 325 512986381 512986592 5.460000e-36 163.0
38 TraesCS2B01G424200 chr5B 84.259 108 12 5 20 122 676057695 676057588 4.340000e-17 100.0
39 TraesCS2B01G424200 chr5B 100.000 48 0 0 6155 6202 423727344 423727297 9.400000e-14 89.8
40 TraesCS2B01G424200 chr5B 100.000 47 0 0 6156 6202 678998143 678998097 3.380000e-13 87.9
41 TraesCS2B01G424200 chr5A 75.901 444 73 21 207 632 703387185 703387612 5.390000e-46 196.0
42 TraesCS2B01G424200 chr6B 74.564 401 73 17 121 515 671576036 671576413 1.530000e-31 148.0
43 TraesCS2B01G424200 chr6B 94.737 38 1 1 6315 6352 712194260 712194224 2.650000e-04 58.4
44 TraesCS2B01G424200 chr6B 96.970 33 1 0 6315 6347 671157150 671157182 1.000000e-03 56.5
45 TraesCS2B01G424200 chrUn 84.259 108 12 5 20 122 182870039 182869932 4.340000e-17 100.0
46 TraesCS2B01G424200 chrUn 96.970 33 1 0 6316 6348 27630231 27630199 1.000000e-03 56.5
47 TraesCS2B01G424200 chr3B 83.333 102 13 3 8 109 505262248 505262345 2.610000e-14 91.6
48 TraesCS2B01G424200 chr7B 100.000 47 0 0 6154 6200 575441122 575441076 3.380000e-13 87.9
49 TraesCS2B01G424200 chr4A 100.000 46 0 0 6155 6200 649061193 649061238 1.220000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G424200 chr2B 610409048 610415855 6807 False 12573.000000 12573 100.000000 1 6808 1 chr2B.!!$F3 6807
1 TraesCS2B01G424200 chr2D 518257844 518265348 7504 False 1629.333333 7276 88.498167 2 6808 6 chr2D.!!$F3 6806
2 TraesCS2B01G424200 chr2A 662332119 662338508 6389 False 2096.750000 7088 88.098000 437 6808 4 chr2A.!!$F1 6371
3 TraesCS2B01G424200 chr7A 598907502 598908051 549 False 407.000000 407 80.639000 115 659 1 chr7A.!!$F3 544
4 TraesCS2B01G424200 chr4B 181191543 181192302 759 True 407.000000 407 77.373000 25 749 1 chr4B.!!$R1 724
5 TraesCS2B01G424200 chr4D 85858153 85858792 639 False 339.000000 339 76.946000 200 867 1 chr4D.!!$F1 667
6 TraesCS2B01G424200 chr6A 585495628 585496210 582 True 324.000000 324 77.834000 14 566 1 chr6A.!!$R1 552
7 TraesCS2B01G424200 chr7D 422591180 422591720 540 True 272.000000 272 76.685000 2 522 1 chr7D.!!$R2 520
8 TraesCS2B01G424200 chr7D 59394342 59394969 627 True 202.000000 202 73.516000 32 665 1 chr7D.!!$R1 633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
868 1309 1.202582 CTGAACGCGAGATATAGGGGG 59.797 57.143 15.93 0.0 0.00 5.40 F
1787 2311 0.036388 GACCGTTGGCTCTCATTCCA 60.036 55.000 0.00 0.0 0.00 3.53 F
2063 2587 1.221635 ATTGCTACCCACCTGCCATA 58.778 50.000 0.00 0.0 0.00 2.74 F
2224 2748 2.779755 ATGAACGTGCCATCAGGTAA 57.220 45.000 0.00 0.0 40.08 2.85 F
3177 3714 0.040204 CCTCCTGAAAAGGTGCCCAT 59.960 55.000 0.00 0.0 0.00 4.00 F
4347 4888 1.377202 GATGCGTGAAGGGGAAGCA 60.377 57.895 0.00 0.0 42.28 3.91 F
4869 5413 1.593006 CTAGCGTATCCGTGCTTTTGG 59.407 52.381 0.00 0.0 42.48 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2484 3021 0.099968 CCCATGCACATTTGAGAGCG 59.900 55.000 0.00 0.00 0.00 5.03 R
2672 3209 2.093764 CAGACCCTCCTTCACTGACATC 60.094 54.545 0.00 0.00 0.00 3.06 R
2905 3442 4.070009 ACTTACCTGCTTTCCTTTTACGG 58.930 43.478 0.00 0.00 0.00 4.02 R
4063 4604 2.108168 AGCATCCGTACCTGTGTATGT 58.892 47.619 0.00 0.00 32.96 2.29 R
4751 5295 0.464036 CGCCACCTGCCTCAGTAATA 59.536 55.000 0.00 0.00 36.24 0.98 R
5595 6839 0.314302 AGAGGAGACGTTCACGGTTG 59.686 55.000 4.07 0.00 44.95 3.77 R
6649 8009 0.383491 CAAAGAAGCACACACGCGAG 60.383 55.000 15.93 7.88 36.85 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
180 200 9.439500 ACACATTTATCATTTTCCCAATTCTTG 57.561 29.630 0.00 0.00 0.00 3.02
291 359 6.655078 AATACATGCTCAACACCTTTTCTT 57.345 33.333 0.00 0.00 0.00 2.52
311 449 8.804688 TTTCTTTACACATTTAACATTTCCCG 57.195 30.769 0.00 0.00 0.00 5.14
426 605 9.912634 AATACATGTTCAACAACTTTTCTATGG 57.087 29.630 2.30 0.00 33.17 2.74
529 952 8.729805 TTTTCCAATACTTGTTCAGCATTTTT 57.270 26.923 0.00 0.00 0.00 1.94
530 953 7.945033 TTCCAATACTTGTTCAGCATTTTTC 57.055 32.000 0.00 0.00 0.00 2.29
543 966 8.981647 GTTCAGCATTTTTCAATACTTGTTCAT 58.018 29.630 0.00 0.00 0.00 2.57
574 997 7.922505 TCAAATACTTGTTCAACATTTTCCG 57.077 32.000 0.00 0.00 33.94 4.30
576 999 8.191446 TCAAATACTTGTTCAACATTTTCCGAA 58.809 29.630 0.00 0.00 33.94 4.30
577 1000 8.977505 CAAATACTTGTTCAACATTTTCCGAAT 58.022 29.630 0.00 0.00 0.00 3.34
578 1001 8.519492 AATACTTGTTCAACATTTTCCGAATG 57.481 30.769 0.00 0.00 0.00 2.67
579 1002 4.744631 ACTTGTTCAACATTTTCCGAATGC 59.255 37.500 0.00 0.00 0.00 3.56
580 1003 4.582701 TGTTCAACATTTTCCGAATGCT 57.417 36.364 0.00 0.00 0.00 3.79
581 1004 4.942852 TGTTCAACATTTTCCGAATGCTT 58.057 34.783 0.00 0.00 0.00 3.91
582 1005 4.744137 TGTTCAACATTTTCCGAATGCTTG 59.256 37.500 0.00 4.11 0.00 4.01
583 1006 4.844998 TCAACATTTTCCGAATGCTTGA 57.155 36.364 10.11 10.11 31.66 3.02
588 1011 5.969423 ACATTTTCCGAATGCTTGATCAAT 58.031 33.333 8.96 0.00 0.00 2.57
632 1055 9.334947 TCAACATTTTCCAAATGCTTGATTAAA 57.665 25.926 15.56 0.00 34.14 1.52
768 1208 9.465985 AAAACAGAAAACGTAAAAGAAAACAGA 57.534 25.926 0.00 0.00 0.00 3.41
832 1273 3.692406 GCCTCCCGTTCACCGAGT 61.692 66.667 0.00 0.00 39.56 4.18
868 1309 1.202582 CTGAACGCGAGATATAGGGGG 59.797 57.143 15.93 0.00 0.00 5.40
906 1350 7.219917 CGCAGTCTTTAAAGAAAAATGTTGACA 59.780 33.333 19.30 0.00 36.68 3.58
946 1419 2.328099 CGGGCTCCTTGTCAGTTGC 61.328 63.158 0.00 0.00 0.00 4.17
952 1425 2.253452 CTTGTCAGTTGCAGCGGC 59.747 61.111 0.31 0.31 41.68 6.53
1056 1543 3.550431 GCGGAGGCCAGGAGCATA 61.550 66.667 5.01 0.00 46.50 3.14
1180 1667 0.685097 TTACGGCAGCCTTCTGAACT 59.315 50.000 10.54 0.00 42.95 3.01
1181 1668 1.552578 TACGGCAGCCTTCTGAACTA 58.447 50.000 10.54 0.00 42.95 2.24
1182 1669 0.247736 ACGGCAGCCTTCTGAACTAG 59.752 55.000 10.54 0.00 42.95 2.57
1247 1734 5.194432 TCCTAAGTAGCAACAGGACTAGAG 58.806 45.833 0.00 0.00 32.20 2.43
1251 1738 5.810080 AGTAGCAACAGGACTAGAGTTTT 57.190 39.130 0.00 0.00 0.00 2.43
1339 1830 4.767409 AGTAGAAGAAACCCCAAATTCAGC 59.233 41.667 0.00 0.00 0.00 4.26
1344 1835 0.178975 AACCCCAAATTCAGCCGTCA 60.179 50.000 0.00 0.00 0.00 4.35
1345 1836 0.178975 ACCCCAAATTCAGCCGTCAA 60.179 50.000 0.00 0.00 0.00 3.18
1346 1837 0.965439 CCCCAAATTCAGCCGTCAAA 59.035 50.000 0.00 0.00 0.00 2.69
1348 1839 1.669795 CCCAAATTCAGCCGTCAAAGC 60.670 52.381 0.00 0.00 0.00 3.51
1350 1841 0.603065 AAATTCAGCCGTCAAAGCCC 59.397 50.000 0.00 0.00 0.00 5.19
1351 1842 1.250840 AATTCAGCCGTCAAAGCCCC 61.251 55.000 0.00 0.00 0.00 5.80
1352 1843 2.424842 ATTCAGCCGTCAAAGCCCCA 62.425 55.000 0.00 0.00 0.00 4.96
1353 1844 2.597217 CAGCCGTCAAAGCCCCAA 60.597 61.111 0.00 0.00 0.00 4.12
1354 1845 2.197324 AGCCGTCAAAGCCCCAAA 59.803 55.556 0.00 0.00 0.00 3.28
1355 1846 1.228862 AGCCGTCAAAGCCCCAAAT 60.229 52.632 0.00 0.00 0.00 2.32
1356 1847 0.831711 AGCCGTCAAAGCCCCAAATT 60.832 50.000 0.00 0.00 0.00 1.82
1357 1848 0.389817 GCCGTCAAAGCCCCAAATTC 60.390 55.000 0.00 0.00 0.00 2.17
1358 1849 0.965439 CCGTCAAAGCCCCAAATTCA 59.035 50.000 0.00 0.00 0.00 2.57
1359 1850 1.067635 CCGTCAAAGCCCCAAATTCAG 60.068 52.381 0.00 0.00 0.00 3.02
1360 1851 1.613437 CGTCAAAGCCCCAAATTCAGT 59.387 47.619 0.00 0.00 0.00 3.41
1361 1852 2.607771 CGTCAAAGCCCCAAATTCAGTG 60.608 50.000 0.00 0.00 0.00 3.66
1362 1853 2.365293 GTCAAAGCCCCAAATTCAGTGT 59.635 45.455 0.00 0.00 0.00 3.55
1363 1854 2.627699 TCAAAGCCCCAAATTCAGTGTC 59.372 45.455 0.00 0.00 0.00 3.67
1408 1899 2.990066 GTAGATGCACTACCTGCCTT 57.010 50.000 12.68 0.00 46.51 4.35
1411 1902 2.752030 AGATGCACTACCTGCCTTCTA 58.248 47.619 0.00 0.00 46.51 2.10
1450 1941 6.662865 TGAATCCTCACTCCTCTCATATTC 57.337 41.667 0.00 0.00 0.00 1.75
1457 1948 5.363101 TCACTCCTCTCATATTCAATGTGC 58.637 41.667 0.00 0.00 0.00 4.57
1496 1987 3.632145 CCCCCAATATCTGTTTGTGTAGC 59.368 47.826 0.00 0.00 0.00 3.58
1537 2028 7.987750 TGCACCAATGTACAGTTTTATAGAA 57.012 32.000 0.33 0.00 0.00 2.10
1570 2061 6.616947 CATTTGCTAGGAAAACGGTTGATTA 58.383 36.000 13.75 0.00 0.00 1.75
1574 2065 6.848451 TGCTAGGAAAACGGTTGATTATTTC 58.152 36.000 0.00 0.00 0.00 2.17
1679 2196 7.284489 AGGAATATAGAGAACTCTGACTGTGTC 59.716 40.741 13.73 0.00 40.71 3.67
1684 2208 4.764823 AGAGAACTCTGACTGTGTCTAAGG 59.235 45.833 3.39 0.00 38.75 2.69
1719 2243 7.442666 ACCAGAGAGAAACAGTTGTTCTTTATC 59.557 37.037 0.00 0.00 37.25 1.75
1761 2285 0.618458 TGTTGACAGGGTATGGAGCC 59.382 55.000 0.00 0.00 44.20 4.70
1772 2296 2.280628 GTATGGAGCCTTTTCTGACCG 58.719 52.381 0.00 0.00 0.00 4.79
1787 2311 0.036388 GACCGTTGGCTCTCATTCCA 60.036 55.000 0.00 0.00 0.00 3.53
1828 2352 9.276590 TGATCTGCCTGTTAATACATAATTCAG 57.723 33.333 0.00 0.00 32.86 3.02
1920 2444 1.325476 GCCTTTAGCCATGCCTGCTT 61.325 55.000 0.09 0.00 40.23 3.91
2063 2587 1.221635 ATTGCTACCCACCTGCCATA 58.778 50.000 0.00 0.00 0.00 2.74
2158 2682 8.470002 GCAATACAAAGAGAGGGTTATCAAATT 58.530 33.333 0.00 0.00 0.00 1.82
2224 2748 2.779755 ATGAACGTGCCATCAGGTAA 57.220 45.000 0.00 0.00 40.08 2.85
2293 2828 8.792633 GCACCTTTAATTCAATATATGGCAGTA 58.207 33.333 0.00 0.00 0.00 2.74
2309 2845 4.101585 TGGCAGTAGTAATTCAGGAGATGG 59.898 45.833 0.00 0.00 0.00 3.51
2672 3209 7.075741 AGGACGAAATATTTTCTCAACAAACG 58.924 34.615 1.43 0.07 0.00 3.60
2905 3442 6.146898 ACGTTTATTGCCAAATGACAGTAAC 58.853 36.000 0.00 0.00 0.00 2.50
2938 3475 4.976540 AGCAGGTAAGTCCTTTAAGTGT 57.023 40.909 0.00 0.00 45.67 3.55
3177 3714 0.040204 CCTCCTGAAAAGGTGCCCAT 59.960 55.000 0.00 0.00 0.00 4.00
3454 3993 9.482627 CTAATTCCCTAGTAGCAAACTTATGAG 57.517 37.037 0.00 0.00 39.80 2.90
4063 4604 6.269769 TGGTATATGGTATGCTGAATGTCTCA 59.730 38.462 0.00 0.00 0.00 3.27
4129 4670 1.590238 GAAGTCCTGAATGTGCGATCG 59.410 52.381 11.69 11.69 0.00 3.69
4249 4790 6.071051 TGCAGGTCATAGTTACACACAGATTA 60.071 38.462 0.00 0.00 0.00 1.75
4253 4794 7.981789 AGGTCATAGTTACACACAGATTACATG 59.018 37.037 0.00 0.00 0.00 3.21
4347 4888 1.377202 GATGCGTGAAGGGGAAGCA 60.377 57.895 0.00 0.00 42.28 3.91
4373 4914 1.820519 GCAGGTGCTCCATTCAATTGA 59.179 47.619 3.38 3.38 38.21 2.57
4516 5058 6.176183 ACCTGATCATCAAGGTTTACTCTTG 58.824 40.000 0.00 0.00 41.99 3.02
4750 5294 8.339344 TGGGTTATTTTTACCTAAGCAAGTAC 57.661 34.615 0.00 0.00 35.92 2.73
4751 5295 8.165397 TGGGTTATTTTTACCTAAGCAAGTACT 58.835 33.333 0.00 0.00 35.92 2.73
4752 5296 9.671279 GGGTTATTTTTACCTAAGCAAGTACTA 57.329 33.333 0.00 0.00 35.92 1.82
4767 5311 5.352284 CAAGTACTATTACTGAGGCAGGTG 58.648 45.833 0.00 0.00 38.65 4.00
4869 5413 1.593006 CTAGCGTATCCGTGCTTTTGG 59.407 52.381 0.00 0.00 42.48 3.28
4946 5490 7.803279 ATCCGGAGTTTATTCACCTATTTTC 57.197 36.000 11.34 0.00 0.00 2.29
5257 5805 6.963805 GCTCAAACTATTACTTGTTGCATCTC 59.036 38.462 0.00 0.00 0.00 2.75
5360 5908 5.815581 TGTATGTCCTAACTGCTGGAAAAT 58.184 37.500 0.00 0.00 33.72 1.82
5393 5941 4.273235 TGCTGGATGCTTGTGTAAATATCG 59.727 41.667 0.00 0.00 43.37 2.92
5531 6079 6.264744 CGAGGTAACCATCCTTCTTGTCTATA 59.735 42.308 0.00 0.00 35.20 1.31
5634 6878 1.358787 TCAAGCCCCATTCACCATCTT 59.641 47.619 0.00 0.00 0.00 2.40
5635 6879 2.181975 CAAGCCCCATTCACCATCTTT 58.818 47.619 0.00 0.00 0.00 2.52
5643 6887 6.239036 GCCCCATTCACCATCTTTAGATAAAC 60.239 42.308 0.00 0.00 32.63 2.01
5646 6890 8.190784 CCCATTCACCATCTTTAGATAAACAAC 58.809 37.037 0.00 0.00 32.63 3.32
5854 7099 7.016072 CCATTTGGGGCAATTATATTGGTAGAA 59.984 37.037 1.99 0.00 0.00 2.10
5862 7107 2.440539 ATATTGGTAGAAGAGGCGCG 57.559 50.000 0.00 0.00 0.00 6.86
5886 7131 2.602746 TAAGCCAAGATTCCCGCGGG 62.603 60.000 39.13 39.13 0.00 6.13
5927 7182 5.063564 GCTAGGAATGACGAATCGTTTTTCT 59.936 40.000 21.85 18.41 41.37 2.52
5940 7195 5.728351 TCGTTTTTCTTTTCATCGAGTGT 57.272 34.783 0.00 0.00 0.00 3.55
5947 7202 6.525121 TTCTTTTCATCGAGTGTGTAACTG 57.475 37.500 0.00 0.00 40.07 3.16
5970 7225 6.923012 TGGATGTCAATTGGAAAATGTACAG 58.077 36.000 5.42 0.00 0.00 2.74
6004 7259 6.421377 AAACCAGCAACAATTTTGAGAAAC 57.579 33.333 0.00 0.00 0.00 2.78
6026 7281 3.294750 GGGAATTTGGCCCCGTTC 58.705 61.111 0.00 0.99 39.81 3.95
6027 7282 1.608046 GGGAATTTGGCCCCGTTCA 60.608 57.895 0.00 0.00 39.81 3.18
6035 7290 2.044946 GCCCCGTTCAGCTCCAAT 60.045 61.111 0.00 0.00 0.00 3.16
6040 7295 1.068333 CCCGTTCAGCTCCAATGTTTG 60.068 52.381 0.00 0.00 0.00 2.93
6044 7299 1.250328 TCAGCTCCAATGTTTGCCTG 58.750 50.000 0.00 0.00 0.00 4.85
6046 7301 0.963962 AGCTCCAATGTTTGCCTGTG 59.036 50.000 0.00 0.00 0.00 3.66
6068 7325 4.022068 TGCCCAGCAACAATTTAGAGAAAG 60.022 41.667 0.00 0.00 34.76 2.62
6090 7348 2.151202 TGAGAAACTGAACCATTCGGC 58.849 47.619 0.00 0.00 39.72 5.54
6140 7398 3.705604 GTGTTGTTGTGCTGCTAAACAT 58.294 40.909 17.23 0.00 34.04 2.71
6142 7400 4.566360 GTGTTGTTGTGCTGCTAAACATTT 59.434 37.500 17.23 0.00 34.04 2.32
6143 7401 4.565962 TGTTGTTGTGCTGCTAAACATTTG 59.434 37.500 17.23 0.00 34.04 2.32
6151 7409 4.769488 TGCTGCTAAACATTTGTATTCCCA 59.231 37.500 0.00 0.00 0.00 4.37
6152 7410 5.105797 TGCTGCTAAACATTTGTATTCCCAG 60.106 40.000 0.00 0.00 0.00 4.45
6153 7411 5.125417 GCTGCTAAACATTTGTATTCCCAGA 59.875 40.000 0.00 0.00 0.00 3.86
6154 7412 6.183360 GCTGCTAAACATTTGTATTCCCAGAT 60.183 38.462 0.00 0.00 0.00 2.90
6155 7413 7.631377 GCTGCTAAACATTTGTATTCCCAGATT 60.631 37.037 0.00 0.00 0.00 2.40
6156 7414 8.133024 TGCTAAACATTTGTATTCCCAGATTT 57.867 30.769 0.00 0.00 0.00 2.17
6157 7415 8.592809 TGCTAAACATTTGTATTCCCAGATTTT 58.407 29.630 0.00 0.00 0.00 1.82
6158 7416 9.435688 GCTAAACATTTGTATTCCCAGATTTTT 57.564 29.630 0.00 0.00 0.00 1.94
6174 7432 2.535588 TTTTTGACGGAGCTACGGC 58.464 52.632 24.83 22.72 43.68 5.68
6181 7439 3.534056 GGAGCTACGGCGGGCTTA 61.534 66.667 25.05 3.19 44.37 3.09
6182 7440 2.279318 GAGCTACGGCGGGCTTAC 60.279 66.667 25.05 13.36 44.37 2.34
6183 7441 4.203076 AGCTACGGCGGGCTTACG 62.203 66.667 20.44 0.00 44.37 3.18
6194 7452 3.497031 GCTTACGCCGGCCTGAAC 61.497 66.667 23.46 3.95 0.00 3.18
6195 7453 2.818274 CTTACGCCGGCCTGAACC 60.818 66.667 23.46 0.00 0.00 3.62
6196 7454 3.599285 CTTACGCCGGCCTGAACCA 62.599 63.158 23.46 0.00 0.00 3.67
6197 7455 2.869503 CTTACGCCGGCCTGAACCAT 62.870 60.000 23.46 0.00 0.00 3.55
6198 7456 2.472414 TTACGCCGGCCTGAACCATT 62.472 55.000 23.46 0.00 0.00 3.16
6199 7457 2.472414 TACGCCGGCCTGAACCATTT 62.472 55.000 23.46 0.00 0.00 2.32
6200 7458 2.885113 GCCGGCCTGAACCATTTC 59.115 61.111 18.11 0.00 0.00 2.17
6296 7554 5.294552 GCTGATACTCAATTTCTGGTGTACC 59.705 44.000 0.00 0.00 0.00 3.34
6303 7561 6.039382 ACTCAATTTCTGGTGTACCTTGTTTC 59.961 38.462 2.32 0.00 36.82 2.78
6323 7581 8.660295 TGTTTCTCCATTTCTTCTACTACCTA 57.340 34.615 0.00 0.00 0.00 3.08
6366 7642 4.930463 TTTTGCAAACTTTTCGGTTTCC 57.070 36.364 12.39 0.00 37.32 3.13
6367 7643 2.588027 TGCAAACTTTTCGGTTTCCC 57.412 45.000 0.00 0.00 37.32 3.97
6390 7666 3.243855 TTTTTGAGGTTTGACGCGC 57.756 47.368 5.73 0.00 0.00 6.86
6443 7732 3.274288 GTCTGGTAGGAGCAAGATTTGG 58.726 50.000 0.00 0.00 0.00 3.28
6468 7757 2.960170 CCTGCAGACTTGGCAAGC 59.040 61.111 26.45 18.40 41.39 4.01
6479 7768 2.362120 GGCAAGCTGGCATCCTGT 60.362 61.111 16.69 0.00 43.14 4.00
6586 7945 5.617087 GCTTTCTGTCCTAAACTAAAAGCGG 60.617 44.000 0.00 0.00 41.61 5.52
6590 7949 3.268330 GTCCTAAACTAAAAGCGGGAGG 58.732 50.000 0.00 0.00 0.00 4.30
6602 7961 3.934457 AGCGGGAGGTTAACAAAAATG 57.066 42.857 8.10 0.00 37.18 2.32
6649 8009 1.954927 CTATGCGTTTCTTCCCTCCC 58.045 55.000 0.00 0.00 0.00 4.30
6763 8142 3.954258 ACACCAAAGAAAACTTCCTCCAG 59.046 43.478 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 126 6.865834 TGTGGGCCATGTATTAAAAGAAAT 57.134 33.333 10.70 0.00 0.00 2.17
121 127 6.865834 ATGTGGGCCATGTATTAAAAGAAA 57.134 33.333 10.70 0.00 30.69 2.52
123 129 6.865834 AAATGTGGGCCATGTATTAAAAGA 57.134 33.333 10.70 0.00 32.82 2.52
124 130 7.920160 AAAAATGTGGGCCATGTATTAAAAG 57.080 32.000 10.70 0.00 32.82 2.27
195 215 9.934190 GCATTTGAAAAATGTTGAATAGTTGTT 57.066 25.926 12.82 0.00 0.00 2.83
196 216 9.328845 AGCATTTGAAAAATGTTGAATAGTTGT 57.671 25.926 12.82 0.00 0.00 3.32
199 219 9.328845 ACAAGCATTTGAAAAATGTTGAATAGT 57.671 25.926 21.35 8.84 37.73 2.12
276 343 9.796120 TTAAATGTGTAAAGAAAAGGTGTTGAG 57.204 29.630 0.00 0.00 0.00 3.02
291 359 6.809196 GCATTCGGGAAATGTTAAATGTGTAA 59.191 34.615 0.30 0.00 45.55 2.41
425 604 8.379902 CAAGCATTTGGAAAATATTTAACGTCC 58.620 33.333 0.01 5.48 0.00 4.79
426 605 9.134734 TCAAGCATTTGGAAAATATTTAACGTC 57.865 29.630 0.01 0.00 34.97 4.34
470 692 6.633500 AGAATTCGGAGAATGTTGAACAAA 57.367 33.333 0.62 0.00 45.90 2.83
483 750 9.076596 GGAAAAATGTTAATCAAGAATTCGGAG 57.923 33.333 0.00 0.00 0.00 4.63
572 995 7.990541 TGAAAAATATTGATCAAGCATTCGG 57.009 32.000 14.54 0.00 0.00 4.30
728 1166 9.198065 CGTTTTCTGTTTTTCTATTTTGCTTTG 57.802 29.630 0.00 0.00 0.00 2.77
827 1268 0.533032 GAGAGGGAAGGAACACTCGG 59.467 60.000 0.00 0.00 44.12 4.63
832 1273 0.541998 TCAGCGAGAGGGAAGGAACA 60.542 55.000 0.00 0.00 0.00 3.18
885 1326 9.598517 AAGCATGTCAACATTTTTCTTTAAAGA 57.401 25.926 13.99 13.99 33.61 2.52
923 1396 1.115467 CTGACAAGGAGCCCGACTAT 58.885 55.000 0.00 0.00 0.00 2.12
957 1439 1.492993 CCCTAGCTAATCCCCCTGGC 61.493 65.000 0.00 0.00 0.00 4.85
1135 1622 2.304470 GAGGGGAAGATAGAAGATGGGC 59.696 54.545 0.00 0.00 0.00 5.36
1144 1631 4.515567 GCCGTAATTTTGAGGGGAAGATAG 59.484 45.833 0.00 0.00 0.00 2.08
1180 1667 6.260493 GCTGTCGAGATTTCTACCTTCTACTA 59.740 42.308 0.00 0.00 0.00 1.82
1181 1668 5.066764 GCTGTCGAGATTTCTACCTTCTACT 59.933 44.000 0.00 0.00 0.00 2.57
1182 1669 5.066764 AGCTGTCGAGATTTCTACCTTCTAC 59.933 44.000 0.00 0.00 0.00 2.59
1190 1677 9.684448 CAATCTATAAAGCTGTCGAGATTTCTA 57.316 33.333 9.51 0.00 38.71 2.10
1282 1769 0.830648 TAAGTTCATCGCAGAGGGGG 59.169 55.000 0.00 0.00 43.63 5.40
1283 1770 1.808133 GCTAAGTTCATCGCAGAGGGG 60.808 57.143 0.00 0.00 43.63 4.79
1284 1771 1.137872 AGCTAAGTTCATCGCAGAGGG 59.862 52.381 0.00 0.00 43.63 4.30
1339 1830 0.965439 TGAATTTGGGGCTTTGACGG 59.035 50.000 0.00 0.00 0.00 4.79
1344 1835 2.962859 AGACACTGAATTTGGGGCTTT 58.037 42.857 0.00 0.00 0.00 3.51
1345 1836 2.683211 AGACACTGAATTTGGGGCTT 57.317 45.000 0.00 0.00 0.00 4.35
1346 1837 2.629617 CAAAGACACTGAATTTGGGGCT 59.370 45.455 0.00 0.00 31.73 5.19
1348 1839 3.304659 CGTCAAAGACACTGAATTTGGGG 60.305 47.826 9.39 0.00 35.21 4.96
1350 1841 3.853307 GCCGTCAAAGACACTGAATTTGG 60.853 47.826 9.39 0.00 35.21 3.28
1351 1842 3.300009 GCCGTCAAAGACACTGAATTTG 58.700 45.455 0.00 0.00 35.68 2.32
1352 1843 2.293399 GGCCGTCAAAGACACTGAATTT 59.707 45.455 0.00 0.00 32.09 1.82
1353 1844 1.880027 GGCCGTCAAAGACACTGAATT 59.120 47.619 0.00 0.00 32.09 2.17
1354 1845 1.523758 GGCCGTCAAAGACACTGAAT 58.476 50.000 0.00 0.00 32.09 2.57
1355 1846 0.534203 GGGCCGTCAAAGACACTGAA 60.534 55.000 0.00 0.00 32.09 3.02
1356 1847 1.070786 GGGCCGTCAAAGACACTGA 59.929 57.895 0.00 0.00 32.09 3.41
1357 1848 2.317609 CGGGCCGTCAAAGACACTG 61.318 63.158 19.97 0.00 32.09 3.66
1358 1849 2.030562 CGGGCCGTCAAAGACACT 59.969 61.111 19.97 0.00 32.09 3.55
1359 1850 3.047877 CCGGGCCGTCAAAGACAC 61.048 66.667 26.32 0.00 32.09 3.67
1404 1895 4.156739 AGCAGCAAAGTTTGTATAGAAGGC 59.843 41.667 16.70 8.92 0.00 4.35
1406 1897 6.486253 TCAGCAGCAAAGTTTGTATAGAAG 57.514 37.500 16.70 2.67 0.00 2.85
1408 1899 6.094048 GGATTCAGCAGCAAAGTTTGTATAGA 59.906 38.462 16.70 6.63 0.00 1.98
1411 1902 4.768968 AGGATTCAGCAGCAAAGTTTGTAT 59.231 37.500 16.70 3.77 0.00 2.29
1450 1941 2.961522 AAACGAAGTACCGCACATTG 57.038 45.000 0.00 0.00 45.00 2.82
1457 1948 2.223900 GGGGGAGATAAACGAAGTACCG 60.224 54.545 0.00 0.00 45.00 4.02
1496 1987 6.741992 TGGTGCATTAATCTCACTTAACAG 57.258 37.500 13.84 0.00 0.00 3.16
1560 2051 5.616866 CGAAACTGCTGAAATAATCAACCGT 60.617 40.000 0.00 0.00 37.67 4.83
1570 2061 6.341316 TCTATCTTAGCGAAACTGCTGAAAT 58.659 36.000 0.00 0.00 46.70 2.17
1574 2065 4.447054 CCATCTATCTTAGCGAAACTGCTG 59.553 45.833 0.00 0.00 46.70 4.41
1679 2196 6.591750 TCTCTCTGGTTCACTTTACCTTAG 57.408 41.667 0.00 0.00 36.60 2.18
1684 2208 6.049790 ACTGTTTCTCTCTGGTTCACTTTAC 58.950 40.000 0.00 0.00 0.00 2.01
1719 2243 3.122111 TCGCACACATGTTTACATACACG 59.878 43.478 0.00 0.00 34.26 4.49
1761 2285 1.801178 GAGAGCCAACGGTCAGAAAAG 59.199 52.381 0.00 0.00 39.06 2.27
1772 2296 1.820519 TGCAATGGAATGAGAGCCAAC 59.179 47.619 0.00 0.00 37.78 3.77
1828 2352 6.002062 ACGTTGATGATTTTTCTCCAGTTC 57.998 37.500 0.00 0.00 0.00 3.01
2063 2587 2.292061 ACGGTACTACACCCTCATCCTT 60.292 50.000 0.00 0.00 45.52 3.36
2158 2682 8.923270 AGTGAAATTTCTAAAGAAAACCCATCA 58.077 29.630 18.64 6.95 45.81 3.07
2224 2748 5.130145 CAGAGATTCTCAAGTAGGGATGGTT 59.870 44.000 15.83 0.00 32.06 3.67
2265 2793 7.660112 TGCCATATATTGAATTAAAGGTGCTG 58.340 34.615 0.00 0.00 0.00 4.41
2266 2794 7.506938 ACTGCCATATATTGAATTAAAGGTGCT 59.493 33.333 0.00 0.00 0.00 4.40
2374 2910 9.689976 TTTAACATTGGTTGTGTCAAATATCTG 57.310 29.630 0.00 0.00 38.99 2.90
2482 3019 1.089112 CATGCACATTTGAGAGCGGA 58.911 50.000 0.00 0.00 0.00 5.54
2484 3021 0.099968 CCCATGCACATTTGAGAGCG 59.900 55.000 0.00 0.00 0.00 5.03
2672 3209 2.093764 CAGACCCTCCTTCACTGACATC 60.094 54.545 0.00 0.00 0.00 3.06
2794 3331 3.685756 GCTTAACACCCTGCACGTATTTA 59.314 43.478 0.00 0.00 0.00 1.40
2905 3442 4.070009 ACTTACCTGCTTTCCTTTTACGG 58.930 43.478 0.00 0.00 0.00 4.02
3008 3545 4.991056 TCTTGACTCTGTTACAACATCAGC 59.009 41.667 0.00 0.00 38.41 4.26
3383 3922 7.701539 TGGTGTTCTGCTATAATTGACATTT 57.298 32.000 0.00 0.00 0.00 2.32
3454 3993 5.931146 AGTGATTATCGATCAAGAAGGCATC 59.069 40.000 0.00 0.00 45.96 3.91
3767 4307 5.476599 AGCTGACAATGGCAATTAGTAACAA 59.523 36.000 0.00 0.00 0.00 2.83
4063 4604 2.108168 AGCATCCGTACCTGTGTATGT 58.892 47.619 0.00 0.00 32.96 2.29
4129 4670 5.824429 TGAATTTCAATCGCAGATGGAATC 58.176 37.500 8.53 6.04 45.12 2.52
4430 4971 3.752412 AATGTGATGTGATGCGACAAG 57.248 42.857 0.00 0.00 0.00 3.16
4436 4978 5.353956 TGTGTAAGGTAATGTGATGTGATGC 59.646 40.000 0.00 0.00 0.00 3.91
4516 5058 2.227388 ACTGCTTCTGCACACATAAAGC 59.773 45.455 0.00 0.00 45.31 3.51
4718 5260 7.544566 GCTTAGGTAAAAATAACCCAAAGCTTC 59.455 37.037 16.67 0.00 44.88 3.86
4750 5294 1.539065 CGCCACCTGCCTCAGTAATAG 60.539 57.143 0.00 0.00 36.24 1.73
4751 5295 0.464036 CGCCACCTGCCTCAGTAATA 59.536 55.000 0.00 0.00 36.24 0.98
4752 5296 1.221840 CGCCACCTGCCTCAGTAAT 59.778 57.895 0.00 0.00 36.24 1.89
4753 5297 2.662596 CGCCACCTGCCTCAGTAA 59.337 61.111 0.00 0.00 36.24 2.24
4767 5311 1.076995 AACAGGCTTATTCCCCGCC 60.077 57.895 0.00 0.00 44.09 6.13
4869 5413 5.181690 TCATGACAAACAAACTGCCTTAC 57.818 39.130 0.00 0.00 0.00 2.34
4946 5490 4.202161 ACCCGAGTAGCAAGATATCAACAG 60.202 45.833 5.32 0.00 0.00 3.16
5023 5570 5.873179 TTTGTACAATTTCCTAGAAGGCG 57.127 39.130 9.56 0.00 34.61 5.52
5068 5615 1.741770 CTCCAACGGGCTTCTTCGG 60.742 63.158 0.00 0.00 0.00 4.30
5257 5805 2.625737 CAAGATGGTACCTGAGTGCAG 58.374 52.381 14.36 0.00 41.93 4.41
5531 6079 6.324770 CCTGATAAATGGCAAGGAACCTAAAT 59.675 38.462 0.00 0.00 0.00 1.40
5557 6801 1.134401 TCTTTAAGGGCGCCAGAGATG 60.134 52.381 30.85 13.84 0.00 2.90
5595 6839 0.314302 AGAGGAGACGTTCACGGTTG 59.686 55.000 4.07 0.00 44.95 3.77
5605 6849 1.333636 ATGGGGCTTGAGAGGAGACG 61.334 60.000 0.00 0.00 0.00 4.18
5643 6887 6.934056 TCCAGGGATGTAAATTCATTTGTTG 58.066 36.000 0.00 0.00 0.00 3.33
5646 6890 6.780457 ACTCCAGGGATGTAAATTCATTTG 57.220 37.500 0.00 0.00 0.00 2.32
5854 7099 2.279784 GCTTATCAGCGCGCCTCT 60.280 61.111 30.33 15.00 35.91 3.69
5862 7107 1.876156 CGGGAATCTTGGCTTATCAGC 59.124 52.381 0.00 0.00 46.52 4.26
5892 7144 0.745845 ATTCCTAGCGCACTTGCCAG 60.746 55.000 11.47 0.00 37.91 4.85
5927 7182 4.951254 TCCAGTTACACACTCGATGAAAA 58.049 39.130 0.00 0.00 30.92 2.29
5940 7195 6.968263 TTTTCCAATTGACATCCAGTTACA 57.032 33.333 7.12 0.00 0.00 2.41
5947 7202 5.807011 GCTGTACATTTTCCAATTGACATCC 59.193 40.000 7.12 0.00 0.00 3.51
5970 7225 2.677875 CTGGTTTCCCCTGGCTGC 60.678 66.667 0.00 0.00 0.00 5.25
6023 7278 1.615392 AGGCAAACATTGGAGCTGAAC 59.385 47.619 0.00 0.00 0.00 3.18
6026 7281 0.963962 ACAGGCAAACATTGGAGCTG 59.036 50.000 0.00 0.00 0.00 4.24
6027 7282 0.963962 CACAGGCAAACATTGGAGCT 59.036 50.000 0.00 0.00 0.00 4.09
6035 7290 3.225798 GCTGGGCACAGGCAAACA 61.226 61.111 19.71 0.00 45.04 2.83
6040 7295 2.103339 AATTGTTGCTGGGCACAGGC 62.103 55.000 19.71 10.82 45.04 4.85
6044 7299 2.819608 TCTCTAAATTGTTGCTGGGCAC 59.180 45.455 0.00 0.00 38.71 5.01
6046 7301 4.021981 ACTTTCTCTAAATTGTTGCTGGGC 60.022 41.667 0.00 0.00 0.00 5.36
6068 7325 3.609409 GCCGAATGGTTCAGTTTCTCAAC 60.609 47.826 0.00 0.00 37.67 3.18
6090 7348 3.934579 GCAAAACAGATAAAGCATTGGGG 59.065 43.478 0.00 0.00 0.00 4.96
6156 7414 1.286354 CGCCGTAGCTCCGTCAAAAA 61.286 55.000 0.00 0.00 36.60 1.94
6157 7415 1.735198 CGCCGTAGCTCCGTCAAAA 60.735 57.895 0.00 0.00 36.60 2.44
6158 7416 2.126228 CGCCGTAGCTCCGTCAAA 60.126 61.111 0.00 0.00 36.60 2.69
6159 7417 4.124351 CCGCCGTAGCTCCGTCAA 62.124 66.667 0.00 0.00 36.60 3.18
6164 7422 3.534056 TAAGCCCGCCGTAGCTCC 61.534 66.667 0.00 0.00 38.74 4.70
6165 7423 2.279318 GTAAGCCCGCCGTAGCTC 60.279 66.667 0.00 0.00 38.74 4.09
6166 7424 4.203076 CGTAAGCCCGCCGTAGCT 62.203 66.667 0.00 0.00 42.40 3.32
6178 7436 2.818274 GGTTCAGGCCGGCGTAAG 60.818 66.667 23.15 10.93 43.44 2.34
6179 7437 2.472414 AATGGTTCAGGCCGGCGTAA 62.472 55.000 23.15 12.08 0.00 3.18
6180 7438 2.472414 AAATGGTTCAGGCCGGCGTA 62.472 55.000 23.15 6.11 0.00 4.42
6181 7439 3.860930 AAATGGTTCAGGCCGGCGT 62.861 57.895 22.54 20.09 0.00 5.68
6182 7440 3.051392 GAAATGGTTCAGGCCGGCG 62.051 63.158 22.54 7.85 33.61 6.46
6183 7441 1.976474 TGAAATGGTTCAGGCCGGC 60.976 57.895 21.18 21.18 38.88 6.13
6184 7442 4.413928 TGAAATGGTTCAGGCCGG 57.586 55.556 0.00 0.00 38.88 6.13
6190 7448 9.411189 TCAATGAATATCATCTGAAATGGTTCA 57.589 29.630 0.00 0.00 37.49 3.18
6191 7449 9.894783 CTCAATGAATATCATCTGAAATGGTTC 57.105 33.333 0.00 0.00 35.76 3.62
6192 7450 8.358148 GCTCAATGAATATCATCTGAAATGGTT 58.642 33.333 0.00 0.00 35.76 3.67
6193 7451 7.504574 TGCTCAATGAATATCATCTGAAATGGT 59.495 33.333 0.00 0.00 35.76 3.55
6194 7452 7.882179 TGCTCAATGAATATCATCTGAAATGG 58.118 34.615 0.00 0.00 35.76 3.16
6195 7453 7.539022 GCTGCTCAATGAATATCATCTGAAATG 59.461 37.037 0.00 0.00 35.76 2.32
6196 7454 7.230712 TGCTGCTCAATGAATATCATCTGAAAT 59.769 33.333 0.00 0.00 35.76 2.17
6197 7455 6.544564 TGCTGCTCAATGAATATCATCTGAAA 59.455 34.615 0.00 0.00 35.76 2.69
6198 7456 6.059484 TGCTGCTCAATGAATATCATCTGAA 58.941 36.000 0.00 0.00 35.76 3.02
6199 7457 5.617252 TGCTGCTCAATGAATATCATCTGA 58.383 37.500 0.00 0.67 35.76 3.27
6200 7458 5.941948 TGCTGCTCAATGAATATCATCTG 57.058 39.130 0.00 0.00 35.76 2.90
6283 7541 5.070685 GGAGAAACAAGGTACACCAGAAAT 58.929 41.667 0.38 0.00 38.89 2.17
6296 7554 8.097662 AGGTAGTAGAAGAAATGGAGAAACAAG 58.902 37.037 0.00 0.00 0.00 3.16
6303 7561 8.578151 GGTACATAGGTAGTAGAAGAAATGGAG 58.422 40.741 0.00 0.00 0.00 3.86
6348 7606 2.588027 GGGAAACCGAAAAGTTTGCA 57.412 45.000 10.18 0.00 46.41 4.08
6376 7652 0.531974 AGAAAGCGCGTCAAACCTCA 60.532 50.000 8.43 0.00 0.00 3.86
6387 7663 1.265365 ACTTTGAGCAAGAGAAAGCGC 59.735 47.619 0.00 0.00 36.21 5.92
6390 7666 5.525378 ACACACTACTTTGAGCAAGAGAAAG 59.475 40.000 0.00 0.00 36.21 2.62
6443 7732 3.909086 AAGTCTGCAGGCGCCCTTC 62.909 63.158 26.15 13.31 37.32 3.46
6458 7747 1.980772 GGATGCCAGCTTGCCAAGT 60.981 57.895 7.41 0.00 0.00 3.16
6468 7757 2.821366 GCCGTCACAGGATGCCAG 60.821 66.667 0.00 0.00 42.53 4.85
6479 7768 2.933492 GCCAAGTATTGTACAGCCGTCA 60.933 50.000 0.00 0.00 46.99 4.35
6586 7945 5.554437 TTTCCCCATTTTTGTTAACCTCC 57.446 39.130 2.48 0.00 0.00 4.30
6590 7949 5.529060 TGCACATTTCCCCATTTTTGTTAAC 59.471 36.000 0.00 0.00 0.00 2.01
6595 7954 4.213906 GTCTTGCACATTTCCCCATTTTTG 59.786 41.667 0.00 0.00 0.00 2.44
6596 7955 4.141528 TGTCTTGCACATTTCCCCATTTTT 60.142 37.500 0.00 0.00 0.00 1.94
6597 7956 3.390639 TGTCTTGCACATTTCCCCATTTT 59.609 39.130 0.00 0.00 0.00 1.82
6598 7957 2.971330 TGTCTTGCACATTTCCCCATTT 59.029 40.909 0.00 0.00 0.00 2.32
6601 7960 2.170166 GATGTCTTGCACATTTCCCCA 58.830 47.619 0.00 0.00 46.53 4.96
6602 7961 1.478105 GGATGTCTTGCACATTTCCCC 59.522 52.381 0.00 0.00 46.53 4.81
6649 8009 0.383491 CAAAGAAGCACACACGCGAG 60.383 55.000 15.93 7.88 36.85 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.