Multiple sequence alignment - TraesCS2B01G424100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G424100 chr2B 100.000 6668 0 0 1 6668 610110999 610117666 0.000000e+00 12314.0
1 TraesCS2B01G424100 chr2B 98.293 820 13 1 3261 4079 752835411 752836230 0.000000e+00 1435.0
2 TraesCS2B01G424100 chr2B 91.939 459 36 1 3302 3760 67535977 67536434 5.640000e-180 641.0
3 TraesCS2B01G424100 chr2B 80.858 653 54 32 544 1175 610275186 610275788 1.320000e-121 448.0
4 TraesCS2B01G424100 chr2B 81.239 581 62 28 622 1178 610016922 610017479 6.180000e-115 425.0
5 TraesCS2B01G424100 chr2B 77.823 487 71 24 4414 4881 610020774 610021242 3.960000e-67 267.0
6 TraesCS2B01G424100 chr2B 75.316 474 93 19 4427 4885 610277256 610277720 8.770000e-49 206.0
7 TraesCS2B01G424100 chr2B 95.000 60 3 0 1196 1255 694990283 694990224 1.980000e-15 95.3
8 TraesCS2B01G424100 chr2D 90.376 2047 132 29 1258 3257 518166437 518168465 0.000000e+00 2628.0
9 TraesCS2B01G424100 chr2D 92.927 1230 72 11 5387 6613 518169628 518170845 0.000000e+00 1775.0
10 TraesCS2B01G424100 chr2D 91.707 1230 53 22 1 1207 518165231 518166434 0.000000e+00 1661.0
11 TraesCS2B01G424100 chr2D 92.231 1197 54 17 4081 5264 518168460 518169630 0.000000e+00 1659.0
12 TraesCS2B01G424100 chr2D 81.568 472 51 24 737 1191 518070215 518070667 2.290000e-94 357.0
13 TraesCS2B01G424100 chr2D 89.076 238 26 0 544 781 518181815 518182052 5.060000e-76 296.0
14 TraesCS2B01G424100 chr2D 77.970 463 75 19 4432 4881 518073969 518074417 1.430000e-66 265.0
15 TraesCS2B01G424100 chr2D 76.160 474 85 21 4427 4883 518183866 518184328 2.420000e-54 224.0
16 TraesCS2B01G424100 chr2D 79.167 144 16 7 817 953 518182062 518182198 3.310000e-13 87.9
17 TraesCS2B01G424100 chr2D 89.231 65 4 3 1193 1256 557798101 557798163 1.990000e-10 78.7
18 TraesCS2B01G424100 chr2D 81.319 91 15 2 6054 6144 45090189 45090277 9.280000e-09 73.1
19 TraesCS2B01G424100 chr2A 93.377 1223 57 15 1 1214 662228530 662229737 0.000000e+00 1788.0
20 TraesCS2B01G424100 chr2A 90.131 1226 57 23 4081 5264 662231818 662233021 0.000000e+00 1535.0
21 TraesCS2B01G424100 chr2A 98.058 824 15 1 3261 4083 44393133 44392310 0.000000e+00 1432.0
22 TraesCS2B01G424100 chr2A 92.365 812 53 7 5387 6194 662233019 662233825 0.000000e+00 1147.0
23 TraesCS2B01G424100 chr2A 93.074 693 35 4 2558 3249 662231137 662231817 0.000000e+00 1002.0
24 TraesCS2B01G424100 chr2A 94.575 424 21 2 6190 6613 662249332 662249753 0.000000e+00 654.0
25 TraesCS2B01G424100 chr2A 83.218 578 70 16 625 1191 661939864 661940425 7.720000e-139 505.0
26 TraesCS2B01G424100 chr2A 90.860 372 29 5 1258 1625 662229886 662230256 1.670000e-135 494.0
27 TraesCS2B01G424100 chr2A 90.031 321 13 4 2257 2559 662230714 662231033 1.350000e-106 398.0
28 TraesCS2B01G424100 chr2A 89.273 289 30 1 1733 2021 662230427 662230714 1.770000e-95 361.0
29 TraesCS2B01G424100 chr2A 97.110 173 5 0 3907 4079 44392961 44393133 6.540000e-75 292.0
30 TraesCS2B01G424100 chr2A 84.815 270 38 3 183 450 662315367 662315635 1.100000e-67 268.0
31 TraesCS2B01G424100 chr2A 82.390 318 33 13 874 1191 662315985 662316279 8.580000e-64 255.0
32 TraesCS2B01G424100 chr2A 77.556 450 73 20 4448 4881 661944786 661945223 5.160000e-61 246.0
33 TraesCS2B01G424100 chr2A 89.175 194 16 5 536 726 662315672 662315863 3.110000e-58 237.0
34 TraesCS2B01G424100 chr2A 74.633 477 88 23 4427 4883 662316762 662317225 5.310000e-41 180.0
35 TraesCS2B01G424100 chr2A 89.474 57 5 1 725 781 662315881 662315936 3.340000e-08 71.3
36 TraesCS2B01G424100 chr5B 98.776 817 10 0 3261 4077 256597432 256596616 0.000000e+00 1454.0
37 TraesCS2B01G424100 chr5B 89.677 620 60 4 3462 4080 3943823 3944439 0.000000e+00 787.0
38 TraesCS2B01G424100 chr5B 93.228 443 27 3 3638 4079 403110153 403109713 0.000000e+00 649.0
39 TraesCS2B01G424100 chr5B 91.388 418 32 4 3669 4084 542696291 542696706 2.700000e-158 569.0
40 TraesCS2B01G424100 chr5B 91.167 317 27 1 3261 3577 403110486 403110171 4.780000e-116 429.0
41 TraesCS2B01G424100 chr5B 95.977 174 7 0 3907 4080 256597260 256597433 3.940000e-72 283.0
42 TraesCS2B01G424100 chr5B 79.725 291 38 13 1951 2240 706452032 706452302 2.450000e-44 191.0
43 TraesCS2B01G424100 chr5B 78.289 304 44 14 1954 2255 386876011 386876294 6.870000e-40 176.0
44 TraesCS2B01G424100 chr5B 90.164 122 7 3 1697 1813 51179507 51179386 3.220000e-33 154.0
45 TraesCS2B01G424100 chr5B 88.889 90 8 1 1954 2043 490347772 490347685 7.070000e-20 110.0
46 TraesCS2B01G424100 chr5B 95.000 60 3 0 1196 1255 185588558 185588617 1.980000e-15 95.3
47 TraesCS2B01G424100 chr5B 91.667 60 5 0 1196 1255 616906881 616906822 4.290000e-12 84.2
48 TraesCS2B01G424100 chr7A 98.291 819 14 0 3261 4079 56727185 56726367 0.000000e+00 1435.0
49 TraesCS2B01G424100 chr7A 90.302 464 39 3 3260 3718 664369107 664368645 2.660000e-168 603.0
50 TraesCS2B01G424100 chr7A 85.542 83 8 2 1966 2047 536978283 536978204 4.290000e-12 84.2
51 TraesCS2B01G424100 chr6B 92.634 801 31 8 3280 4080 707155249 707154477 0.000000e+00 1127.0
52 TraesCS2B01G424100 chr6B 93.750 128 8 0 5261 5388 672460464 672460591 6.820000e-45 193.0
53 TraesCS2B01G424100 chr6B 84.277 159 24 1 2083 2241 118216678 118216521 3.220000e-33 154.0
54 TraesCS2B01G424100 chr6B 96.226 53 2 0 1198 1250 664636574 664636626 3.310000e-13 87.9
55 TraesCS2B01G424100 chr6B 84.810 79 11 1 6076 6153 698424462 698424540 1.990000e-10 78.7
56 TraesCS2B01G424100 chr6B 93.023 43 2 1 1949 1991 713757075 713757116 2.010000e-05 62.1
57 TraesCS2B01G424100 chr3A 88.257 826 52 9 3258 4079 272798925 272799709 0.000000e+00 946.0
58 TraesCS2B01G424100 chr3A 81.132 106 15 4 1948 2051 51436662 51436764 5.540000e-11 80.5
59 TraesCS2B01G424100 chr3A 84.810 79 11 1 6076 6153 41550282 41550360 1.990000e-10 78.7
60 TraesCS2B01G424100 chr6D 82.524 824 59 35 3261 4079 403652824 403653567 0.000000e+00 645.0
61 TraesCS2B01G424100 chr6D 91.667 132 11 0 5262 5393 354422697 354422828 4.110000e-42 183.0
62 TraesCS2B01G424100 chr6D 97.222 36 1 0 3157 3192 447048211 447048246 2.010000e-05 62.1
63 TraesCS2B01G424100 chr3B 89.637 193 16 3 1692 1880 201506415 201506607 6.680000e-60 243.0
64 TraesCS2B01G424100 chr3B 94.915 59 3 0 1697 1755 510983472 510983414 7.120000e-15 93.5
65 TraesCS2B01G424100 chr3B 94.231 52 3 0 1204 1255 815175624 815175573 5.540000e-11 80.5
66 TraesCS2B01G424100 chrUn 88.660 194 17 3 1692 1880 53261801 53261608 1.450000e-56 231.0
67 TraesCS2B01G424100 chrUn 87.755 196 17 2 1692 1880 404958070 404958265 8.700000e-54 222.0
68 TraesCS2B01G424100 chr4B 89.326 178 18 1 1704 1880 78822053 78822230 8.700000e-54 222.0
69 TraesCS2B01G424100 chr4B 93.893 131 7 1 5259 5388 659336492 659336622 5.280000e-46 196.0
70 TraesCS2B01G424100 chr4B 78.547 289 41 14 1953 2240 74859131 74858863 3.200000e-38 171.0
71 TraesCS2B01G424100 chr4B 79.061 277 37 13 1965 2240 664173011 664173267 3.200000e-38 171.0
72 TraesCS2B01G424100 chr4B 76.712 146 25 8 2992 3132 101972740 101972599 9.280000e-09 73.1
73 TraesCS2B01G424100 chr3D 93.701 127 8 0 5262 5388 225859589 225859715 2.450000e-44 191.0
74 TraesCS2B01G424100 chr3D 82.738 168 28 1 2082 2249 272935291 272935457 1.500000e-31 148.0
75 TraesCS2B01G424100 chr3D 86.364 66 9 0 3067 3132 23198455 23198390 9.280000e-09 73.1
76 TraesCS2B01G424100 chr3D 83.333 72 10 2 1970 2041 5228621 5228690 1.550000e-06 65.8
77 TraesCS2B01G424100 chr5A 92.126 127 10 0 5262 5388 369531769 369531895 5.310000e-41 180.0
78 TraesCS2B01G424100 chr5A 78.571 294 43 11 1958 2251 475524775 475524502 6.870000e-40 176.0
79 TraesCS2B01G424100 chr5A 100.000 29 0 0 1954 1982 515948780 515948808 3.000000e-03 54.7
80 TraesCS2B01G424100 chr5D 91.406 128 11 0 5261 5388 11314089 11314216 6.870000e-40 176.0
81 TraesCS2B01G424100 chr5D 77.509 289 44 13 1952 2239 180367960 180368228 3.220000e-33 154.0
82 TraesCS2B01G424100 chr5D 96.226 53 2 0 1198 1250 216061447 216061395 3.310000e-13 87.9
83 TraesCS2B01G424100 chr5D 85.366 82 10 2 1966 2047 337522474 337522395 4.290000e-12 84.2
84 TraesCS2B01G424100 chr5D 92.857 56 3 1 1201 1255 28640863 28640918 5.540000e-11 80.5
85 TraesCS2B01G424100 chr5D 92.727 55 3 1 1202 1255 125781577 125781523 1.990000e-10 78.7
86 TraesCS2B01G424100 chr5D 88.333 60 5 1 1986 2045 350374042 350373985 3.340000e-08 71.3
87 TraesCS2B01G424100 chr4D 92.623 122 9 0 5262 5383 366693479 366693358 6.870000e-40 176.0
88 TraesCS2B01G424100 chr7B 90.769 130 12 0 5262 5391 64463001 64462872 2.470000e-39 174.0
89 TraesCS2B01G424100 chr7B 86.905 84 8 3 6054 6135 716999090 716999172 2.560000e-14 91.6
90 TraesCS2B01G424100 chr7B 80.172 116 17 4 6049 6159 623563688 623563574 1.540000e-11 82.4
91 TraesCS2B01G424100 chr1A 90.551 127 12 0 5262 5388 457952006 457952132 1.150000e-37 169.0
92 TraesCS2B01G424100 chr7D 93.056 72 5 0 3139 3210 478909810 478909881 9.150000e-19 106.0
93 TraesCS2B01G424100 chr1D 83.036 112 17 2 6049 6159 349546112 349546002 4.250000e-17 100.0
94 TraesCS2B01G424100 chr1D 83.333 84 11 3 3053 3133 13505555 13505472 2.580000e-09 75.0
95 TraesCS2B01G424100 chr4A 84.810 79 11 1 6076 6153 560960695 560960773 1.990000e-10 78.7
96 TraesCS2B01G424100 chr4A 88.136 59 5 2 1966 2022 293070146 293070204 1.200000e-07 69.4
97 TraesCS2B01G424100 chr4A 95.238 42 2 0 2004 2045 639037555 639037596 4.320000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G424100 chr2B 610110999 610117666 6667 False 12314.000000 12314 100.000000 1 6668 1 chr2B.!!$F2 6667
1 TraesCS2B01G424100 chr2B 752835411 752836230 819 False 1435.000000 1435 98.293000 3261 4079 1 chr2B.!!$F3 818
2 TraesCS2B01G424100 chr2B 610016922 610021242 4320 False 346.000000 425 79.531000 622 4881 2 chr2B.!!$F4 4259
3 TraesCS2B01G424100 chr2B 610275186 610277720 2534 False 327.000000 448 78.087000 544 4885 2 chr2B.!!$F5 4341
4 TraesCS2B01G424100 chr2D 518165231 518170845 5614 False 1930.750000 2628 91.810250 1 6613 4 chr2D.!!$F4 6612
5 TraesCS2B01G424100 chr2D 518070215 518074417 4202 False 311.000000 357 79.769000 737 4881 2 chr2D.!!$F3 4144
6 TraesCS2B01G424100 chr2D 518181815 518184328 2513 False 202.633333 296 81.467667 544 4883 3 chr2D.!!$F5 4339
7 TraesCS2B01G424100 chr2A 44392310 44393133 823 True 1432.000000 1432 98.058000 3261 4083 1 chr2A.!!$R1 822
8 TraesCS2B01G424100 chr2A 662228530 662233825 5295 False 960.714286 1788 91.301571 1 6194 7 chr2A.!!$F5 6193
9 TraesCS2B01G424100 chr2A 661939864 661940425 561 False 505.000000 505 83.218000 625 1191 1 chr2A.!!$F2 566
10 TraesCS2B01G424100 chr2A 662315367 662317225 1858 False 202.260000 268 84.097400 183 4883 5 chr2A.!!$F6 4700
11 TraesCS2B01G424100 chr5B 256596616 256597432 816 True 1454.000000 1454 98.776000 3261 4077 1 chr5B.!!$R2 816
12 TraesCS2B01G424100 chr5B 3943823 3944439 616 False 787.000000 787 89.677000 3462 4080 1 chr5B.!!$F1 618
13 TraesCS2B01G424100 chr5B 403109713 403110486 773 True 539.000000 649 92.197500 3261 4079 2 chr5B.!!$R5 818
14 TraesCS2B01G424100 chr7A 56726367 56727185 818 True 1435.000000 1435 98.291000 3261 4079 1 chr7A.!!$R1 818
15 TraesCS2B01G424100 chr6B 707154477 707155249 772 True 1127.000000 1127 92.634000 3280 4080 1 chr6B.!!$R2 800
16 TraesCS2B01G424100 chr3A 272798925 272799709 784 False 946.000000 946 88.257000 3258 4079 1 chr3A.!!$F3 821
17 TraesCS2B01G424100 chr6D 403652824 403653567 743 False 645.000000 645 82.524000 3261 4079 1 chr6D.!!$F2 818

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
369 386 1.078214 CGGGCTGAAGATCCAAGCA 60.078 57.895 12.41 0.0 0.00 3.91 F
1820 2880 0.036164 CATTGGGAGGTCGTGGACAA 59.964 55.000 0.00 0.0 33.68 3.18 F
1823 2883 0.178955 TGGGAGGTCGTGGACAACTA 60.179 55.000 0.00 0.0 33.68 2.24 F
2744 4856 0.393132 GGCACCTCTTACCCTTGAGC 60.393 60.000 0.00 0.0 0.00 4.26 F
2759 4872 0.603569 TGAGCTCTGTTCGTCCCTTC 59.396 55.000 16.19 0.0 0.00 3.46 F
2952 5066 1.142465 AGCTGGCATTGATACTCCCTG 59.858 52.381 0.00 0.0 0.00 4.45 F
4144 7432 1.230635 CCACTTTGGTCACTGCTCCG 61.231 60.000 0.00 0.0 31.35 4.63 F
4908 9921 0.106369 ACTGCATGCTGCCCATATGT 60.106 50.000 22.92 0.0 44.23 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1951 3011 0.180406 CCACTACGGGCAGCCTAAAT 59.820 55.000 12.43 0.00 0.00 1.40 R
2743 4855 0.603569 TGAGAAGGGACGAACAGAGC 59.396 55.000 0.00 0.00 0.00 4.09 R
2746 4858 1.608283 GGGTTGAGAAGGGACGAACAG 60.608 57.143 0.00 0.00 0.00 3.16 R
4126 7414 0.249868 TCGGAGCAGTGACCAAAGTG 60.250 55.000 0.00 0.00 0.00 3.16 R
4144 7432 0.532573 TGACCCAGAATCACGAGCTC 59.467 55.000 2.73 2.73 0.00 4.09 R
4494 9476 0.612744 TCATCTGTGGAACGATGCCA 59.387 50.000 0.00 0.00 42.96 4.92 R
5392 10416 0.107214 ATCCCGGCAATACACTGTGG 60.107 55.000 13.09 0.00 0.00 4.17 R
6024 11050 0.844661 TTCATGCCCTAGGGTGTGGT 60.845 55.000 28.96 8.09 37.65 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.524869 TTCCACGCACGAACTGTT 57.475 50.000 0.00 0.00 0.00 3.16
51 52 2.162408 GGGTGCAAGATTCACAGCTTAC 59.838 50.000 0.00 0.00 36.22 2.34
52 53 3.077359 GGTGCAAGATTCACAGCTTACT 58.923 45.455 0.00 0.00 36.22 2.24
82 83 2.636830 CAAGAAATGCTCATCGACCCT 58.363 47.619 0.00 0.00 0.00 4.34
84 85 3.356529 AGAAATGCTCATCGACCCTTT 57.643 42.857 0.00 0.00 0.00 3.11
123 126 1.752683 AGTACCTGAGTAGTGCCTCG 58.247 55.000 0.00 0.00 34.04 4.63
218 223 1.597742 GGCGCTGATACATTCCATGT 58.402 50.000 7.64 0.00 46.92 3.21
315 332 2.348104 TATGCACGCACCCGTCTCT 61.348 57.895 0.00 0.00 46.39 3.10
325 342 1.080705 CCCGTCTCTCGAACCACAC 60.081 63.158 0.00 0.00 42.86 3.82
369 386 1.078214 CGGGCTGAAGATCCAAGCA 60.078 57.895 12.41 0.00 0.00 3.91
370 387 1.094073 CGGGCTGAAGATCCAAGCAG 61.094 60.000 12.41 5.97 0.00 4.24
374 391 1.340405 GCTGAAGATCCAAGCAGGGAA 60.340 52.381 0.08 0.00 41.12 3.97
414 431 1.532868 GCGATGCACAGTTCTTCACTT 59.467 47.619 0.00 0.00 30.92 3.16
555 595 5.393027 CGCAAAGCTCCATTAACAATAGGTT 60.393 40.000 0.00 0.00 43.62 3.50
795 855 2.479275 CCGCTCGAATCGTAGTCTCATA 59.521 50.000 1.52 0.00 0.00 2.15
1185 1278 3.312697 GTGCCGTGAAAACTTCTCTTCTT 59.687 43.478 0.00 0.00 0.00 2.52
1188 1281 3.498777 CCGTGAAAACTTCTCTTCTTCCC 59.501 47.826 0.00 0.00 0.00 3.97
1193 1286 6.488344 GTGAAAACTTCTCTTCTTCCCTTGAT 59.512 38.462 0.00 0.00 0.00 2.57
1231 1324 9.794719 ACTCCCTCCATAAACTAATATAAAAGC 57.205 33.333 0.00 0.00 0.00 3.51
1232 1325 9.793259 CTCCCTCCATAAACTAATATAAAAGCA 57.207 33.333 0.00 0.00 0.00 3.91
1323 1522 2.829741 TTTTGCCCAGGTGTATTTGC 57.170 45.000 0.00 0.00 0.00 3.68
1324 1523 0.600557 TTTGCCCAGGTGTATTTGCG 59.399 50.000 0.00 0.00 0.00 4.85
1384 1615 1.565156 CGTGCCAGCTAAGCAACGAA 61.565 55.000 18.97 0.00 43.02 3.85
1520 2474 3.265791 GAAGCAGACCATAGACACAAGG 58.734 50.000 0.00 0.00 0.00 3.61
1548 2502 8.244113 TGACTTCTTTCTCTTTTGAGTTTTTCC 58.756 33.333 0.00 0.00 46.30 3.13
1559 2513 0.841289 AGTTTTTCCGGTGGACCTGA 59.159 50.000 0.00 0.00 0.00 3.86
1566 2520 4.760047 GGTGGACCTGACGCGCAT 62.760 66.667 5.73 0.00 0.00 4.73
1572 2526 1.211818 GACCTGACGCGCATGATCTC 61.212 60.000 5.73 0.00 0.00 2.75
1581 2535 2.012673 GCGCATGATCTCTGGTCTTTT 58.987 47.619 0.30 0.00 0.00 2.27
1586 2540 3.988976 TGATCTCTGGTCTTTTCCTGG 57.011 47.619 0.00 0.00 0.00 4.45
1595 2549 3.328343 TGGTCTTTTCCTGGAACCGATTA 59.672 43.478 9.04 0.00 0.00 1.75
1644 2598 2.711009 TGGGAATGACTTATGGCTAGGG 59.289 50.000 0.00 0.00 0.00 3.53
1652 2606 3.454812 GACTTATGGCTAGGGGTGAAAGA 59.545 47.826 0.00 0.00 0.00 2.52
1666 2620 4.906618 GGTGAAAGACCAACCAAGATCTA 58.093 43.478 0.00 0.00 45.34 1.98
1689 2643 9.169592 TCTAATATAGTTGGTTTTTCCCGAAAG 57.830 33.333 0.00 0.00 34.77 2.62
1748 2807 4.003648 CGAATCTACTTTGGTTGGAGCTT 58.996 43.478 0.00 0.00 0.00 3.74
1755 2815 5.357742 ACTTTGGTTGGAGCTTGAAAAAT 57.642 34.783 0.00 0.00 0.00 1.82
1820 2880 0.036164 CATTGGGAGGTCGTGGACAA 59.964 55.000 0.00 0.00 33.68 3.18
1823 2883 0.178955 TGGGAGGTCGTGGACAACTA 60.179 55.000 0.00 0.00 33.68 2.24
1888 2948 2.076863 GAAGGAACAGGGAACATCGTG 58.923 52.381 0.00 0.00 0.00 4.35
1929 2989 1.059098 TGTGGAGTTGTCAGGAGCAT 58.941 50.000 0.00 0.00 0.00 3.79
1946 3006 3.615155 AGCATTAAGACCTTGGAGCTTC 58.385 45.455 0.00 0.00 0.00 3.86
1947 3007 3.009473 AGCATTAAGACCTTGGAGCTTCA 59.991 43.478 0.00 0.00 0.00 3.02
1950 3010 5.449725 GCATTAAGACCTTGGAGCTTCAATC 60.450 44.000 8.18 3.91 0.00 2.67
1951 3011 3.795688 AAGACCTTGGAGCTTCAATCA 57.204 42.857 8.18 0.00 0.00 2.57
1987 3067 8.169977 CCGTAGTGGGTAGTATCATAAGTTAA 57.830 38.462 0.00 0.00 0.00 2.01
2103 3184 8.801913 GCTCTTATTTATTTTCATGCAAGACAC 58.198 33.333 0.00 0.00 0.00 3.67
2205 3286 9.087424 TGTCATCTCATTAAAATTGACTAGTCG 57.913 33.333 17.85 0.64 35.63 4.18
2211 3292 3.764885 AAAATTGACTAGTCGGCATGC 57.235 42.857 17.85 9.90 0.00 4.06
2232 3313 7.710044 GCATGCATGATACTAGCTATGATACTT 59.290 37.037 30.64 0.00 0.00 2.24
2233 3314 9.597170 CATGCATGATACTAGCTATGATACTTT 57.403 33.333 22.59 0.00 0.00 2.66
2234 3315 9.814899 ATGCATGATACTAGCTATGATACTTTC 57.185 33.333 0.00 0.00 0.00 2.62
2326 3407 5.641789 ACTTTCACCCTAGTAAAAGTGGT 57.358 39.130 7.72 0.00 39.72 4.16
2370 3451 6.438425 AGGTTTTGACTTAGAATTGCCATCAT 59.562 34.615 0.00 0.00 0.00 2.45
2404 3485 1.589803 AAAACCGAACGAGACCAAGG 58.410 50.000 0.00 0.00 0.00 3.61
2466 3564 2.985847 GCACCGCAAAGAAGGCCT 60.986 61.111 0.00 0.00 0.00 5.19
2498 3598 7.171447 TGTTTTGTGTTTCTTTGTTGAAGTG 57.829 32.000 0.00 0.00 36.70 3.16
2580 4677 3.921677 TGGCCTAGACTAGTTTCAAACG 58.078 45.455 3.32 0.00 36.23 3.60
2688 4800 5.998363 CCTAAACTCTAAAAGCTCTTGTGGT 59.002 40.000 0.00 0.00 0.00 4.16
2697 4809 1.550976 AGCTCTTGTGGTAGTAGTGGC 59.449 52.381 0.00 0.00 0.00 5.01
2743 4855 3.863407 GGCACCTCTTACCCTTGAG 57.137 57.895 0.00 0.00 0.00 3.02
2744 4856 0.393132 GGCACCTCTTACCCTTGAGC 60.393 60.000 0.00 0.00 0.00 4.26
2746 4858 1.406205 GCACCTCTTACCCTTGAGCTC 60.406 57.143 6.82 6.82 0.00 4.09
2759 4872 0.603569 TGAGCTCTGTTCGTCCCTTC 59.396 55.000 16.19 0.00 0.00 3.46
2787 4900 1.421268 TCTTGCAGATCTTGTGGTGGT 59.579 47.619 0.00 0.00 0.00 4.16
2788 4901 2.637382 TCTTGCAGATCTTGTGGTGGTA 59.363 45.455 0.00 0.00 0.00 3.25
2789 4902 3.264193 TCTTGCAGATCTTGTGGTGGTAT 59.736 43.478 0.00 0.00 0.00 2.73
2790 4903 4.469586 TCTTGCAGATCTTGTGGTGGTATA 59.530 41.667 0.00 0.00 0.00 1.47
2791 4904 4.406648 TGCAGATCTTGTGGTGGTATAG 57.593 45.455 0.00 0.00 0.00 1.31
2792 4905 4.030216 TGCAGATCTTGTGGTGGTATAGA 58.970 43.478 0.00 0.00 0.00 1.98
2793 4906 4.469586 TGCAGATCTTGTGGTGGTATAGAA 59.530 41.667 0.00 0.00 0.00 2.10
2794 4907 5.053145 GCAGATCTTGTGGTGGTATAGAAG 58.947 45.833 0.00 0.00 0.00 2.85
2795 4908 5.605534 CAGATCTTGTGGTGGTATAGAAGG 58.394 45.833 0.00 0.00 0.00 3.46
2796 4909 4.656112 AGATCTTGTGGTGGTATAGAAGGG 59.344 45.833 0.00 0.00 0.00 3.95
2813 4926 2.028130 AGGGACTTAGAGCAGATCGTG 58.972 52.381 0.00 0.00 27.25 4.35
2952 5066 1.142465 AGCTGGCATTGATACTCCCTG 59.858 52.381 0.00 0.00 0.00 4.45
3249 5363 9.554724 GCGAAAAATGACAGAAAAATCTATGTA 57.445 29.630 0.00 0.00 0.00 2.29
3252 5366 8.895932 AAAATGACAGAAAAATCTATGTACGC 57.104 30.769 0.00 0.00 0.00 4.42
3253 5367 7.849804 AATGACAGAAAAATCTATGTACGCT 57.150 32.000 0.00 0.00 0.00 5.07
3257 5371 7.815549 TGACAGAAAAATCTATGTACGCTACAA 59.184 33.333 2.70 0.00 42.76 2.41
3258 5372 8.718102 ACAGAAAAATCTATGTACGCTACAAT 57.282 30.769 2.70 0.00 42.76 2.71
3259 5373 9.811995 ACAGAAAAATCTATGTACGCTACAATA 57.188 29.630 2.70 0.00 42.76 1.90
3464 5580 1.454479 CAGGATTCCAGGCGGCAAT 60.454 57.895 13.08 1.53 0.00 3.56
4126 7414 7.410991 AGTATAATAAAATAGGGGATGTGGCC 58.589 38.462 0.00 0.00 0.00 5.36
4144 7432 1.230635 CCACTTTGGTCACTGCTCCG 61.231 60.000 0.00 0.00 31.35 4.63
4213 7501 8.569641 ACACAGTTATAATAAGAGACGATCTCC 58.430 37.037 10.24 0.00 44.42 3.71
4265 7553 5.546621 TCTCCAAATAATTCTAGTCCCGG 57.453 43.478 0.00 0.00 0.00 5.73
4352 7960 4.558538 AGCAACTCAGCTAACTTTTGTG 57.441 40.909 0.00 0.00 44.50 3.33
4408 9342 3.406764 AGACAAATGAGGTGAGCAACTC 58.593 45.455 8.56 8.56 45.20 3.01
4421 9355 6.487689 GTGAGCAACTCAGCTAACTTATTT 57.512 37.500 0.00 0.00 46.75 1.40
4422 9356 7.596749 GTGAGCAACTCAGCTAACTTATTTA 57.403 36.000 0.00 0.00 46.75 1.40
4441 9423 2.693797 ATTGTTTGAACGAGCAGCTG 57.306 45.000 10.11 10.11 0.00 4.24
4494 9476 0.697854 ACCATTCCCTCCCGGCTAAT 60.698 55.000 0.00 0.00 0.00 1.73
4556 9538 1.331399 GGAGGGTCAGGCCTACAGAC 61.331 65.000 3.98 9.34 37.43 3.51
4587 9593 2.607187 CAACTCCCTGTACGCACTAAG 58.393 52.381 0.00 0.00 0.00 2.18
4664 9677 3.136123 GCATGCAGTGTGGGCGAT 61.136 61.111 14.21 0.00 0.00 4.58
4705 9718 0.952280 AGCTCGAGAAGTTCACGTCA 59.048 50.000 18.75 3.70 32.42 4.35
4904 9917 2.758327 CCACTGCATGCTGCCCAT 60.758 61.111 22.92 2.09 44.23 4.00
4905 9918 1.454295 CCACTGCATGCTGCCCATA 60.454 57.895 22.92 0.00 44.23 2.74
4906 9919 0.826256 CCACTGCATGCTGCCCATAT 60.826 55.000 22.92 0.98 44.23 1.78
4907 9920 0.313987 CACTGCATGCTGCCCATATG 59.686 55.000 22.92 9.88 44.23 1.78
4908 9921 0.106369 ACTGCATGCTGCCCATATGT 60.106 50.000 22.92 0.00 44.23 2.29
4909 9922 0.313987 CTGCATGCTGCCCATATGTG 59.686 55.000 20.33 0.00 44.23 3.21
4910 9923 0.396001 TGCATGCTGCCCATATGTGT 60.396 50.000 20.33 0.00 44.23 3.72
4911 9924 0.748450 GCATGCTGCCCATATGTGTT 59.252 50.000 11.37 0.00 37.42 3.32
4912 9925 1.137479 GCATGCTGCCCATATGTGTTT 59.863 47.619 11.37 0.00 37.42 2.83
4913 9926 2.816689 CATGCTGCCCATATGTGTTTG 58.183 47.619 1.24 0.00 31.47 2.93
4914 9927 1.184431 TGCTGCCCATATGTGTTTGG 58.816 50.000 1.24 0.00 0.00 3.28
4915 9928 1.185315 GCTGCCCATATGTGTTTGGT 58.815 50.000 1.24 0.00 0.00 3.67
4946 9959 1.990563 AGTAATCGAACGTGAAAGCCG 59.009 47.619 0.00 0.00 0.00 5.52
4948 9961 1.722011 AATCGAACGTGAAAGCCGAT 58.278 45.000 0.00 0.00 41.06 4.18
4949 9962 1.722011 ATCGAACGTGAAAGCCGATT 58.278 45.000 0.00 0.00 36.71 3.34
4950 9963 2.350899 TCGAACGTGAAAGCCGATTA 57.649 45.000 0.00 0.00 0.00 1.75
4980 10004 4.155733 CTGTATGCGGTCGGGGCA 62.156 66.667 0.00 0.00 45.71 5.36
4993 10017 2.335712 GGGGCAAGGAAGTTCAGCG 61.336 63.158 5.01 0.00 0.00 5.18
5180 10204 1.202463 CGGCATGAACTACTCCCTCTG 60.202 57.143 0.00 0.00 0.00 3.35
5260 10284 1.102978 GGCAACGCACCCTCAAATAT 58.897 50.000 0.00 0.00 0.00 1.28
5264 10288 3.377172 GCAACGCACCCTCAAATATTACT 59.623 43.478 0.00 0.00 0.00 2.24
5265 10289 4.495844 GCAACGCACCCTCAAATATTACTC 60.496 45.833 0.00 0.00 0.00 2.59
5266 10290 4.755266 ACGCACCCTCAAATATTACTCT 57.245 40.909 0.00 0.00 0.00 3.24
5267 10291 5.099042 ACGCACCCTCAAATATTACTCTT 57.901 39.130 0.00 0.00 0.00 2.85
5268 10292 5.497474 ACGCACCCTCAAATATTACTCTTT 58.503 37.500 0.00 0.00 0.00 2.52
5269 10293 5.585047 ACGCACCCTCAAATATTACTCTTTC 59.415 40.000 0.00 0.00 0.00 2.62
5270 10294 5.007724 CGCACCCTCAAATATTACTCTTTCC 59.992 44.000 0.00 0.00 0.00 3.13
5271 10295 5.007724 GCACCCTCAAATATTACTCTTTCCG 59.992 44.000 0.00 0.00 0.00 4.30
5272 10296 6.113411 CACCCTCAAATATTACTCTTTCCGT 58.887 40.000 0.00 0.00 0.00 4.69
5273 10297 6.598064 CACCCTCAAATATTACTCTTTCCGTT 59.402 38.462 0.00 0.00 0.00 4.44
5274 10298 6.822170 ACCCTCAAATATTACTCTTTCCGTTC 59.178 38.462 0.00 0.00 0.00 3.95
5275 10299 6.260271 CCCTCAAATATTACTCTTTCCGTTCC 59.740 42.308 0.00 0.00 0.00 3.62
5276 10300 6.821665 CCTCAAATATTACTCTTTCCGTTCCA 59.178 38.462 0.00 0.00 0.00 3.53
5277 10301 7.335924 CCTCAAATATTACTCTTTCCGTTCCAA 59.664 37.037 0.00 0.00 0.00 3.53
5278 10302 8.624367 TCAAATATTACTCTTTCCGTTCCAAA 57.376 30.769 0.00 0.00 0.00 3.28
5279 10303 9.238368 TCAAATATTACTCTTTCCGTTCCAAAT 57.762 29.630 0.00 0.00 0.00 2.32
5280 10304 9.855021 CAAATATTACTCTTTCCGTTCCAAATT 57.145 29.630 0.00 0.00 0.00 1.82
5283 10307 9.901172 ATATTACTCTTTCCGTTCCAAATTAGT 57.099 29.630 0.00 0.00 0.00 2.24
5284 10308 8.631480 ATTACTCTTTCCGTTCCAAATTAGTT 57.369 30.769 0.00 0.00 0.00 2.24
5285 10309 6.313744 ACTCTTTCCGTTCCAAATTAGTTG 57.686 37.500 0.00 0.00 36.94 3.16
5286 10310 6.059484 ACTCTTTCCGTTCCAAATTAGTTGA 58.941 36.000 0.00 0.00 39.87 3.18
5287 10311 6.017357 ACTCTTTCCGTTCCAAATTAGTTGAC 60.017 38.462 0.00 0.00 39.87 3.18
5288 10312 6.059484 TCTTTCCGTTCCAAATTAGTTGACT 58.941 36.000 0.00 0.00 39.87 3.41
5289 10313 5.934935 TTCCGTTCCAAATTAGTTGACTC 57.065 39.130 0.00 0.00 39.87 3.36
5290 10314 4.963373 TCCGTTCCAAATTAGTTGACTCA 58.037 39.130 0.00 0.00 39.87 3.41
5291 10315 4.994852 TCCGTTCCAAATTAGTTGACTCAG 59.005 41.667 0.00 0.00 39.87 3.35
5292 10316 4.994852 CCGTTCCAAATTAGTTGACTCAGA 59.005 41.667 0.00 0.00 39.87 3.27
5293 10317 5.643777 CCGTTCCAAATTAGTTGACTCAGAT 59.356 40.000 0.00 0.00 39.87 2.90
5294 10318 6.149474 CCGTTCCAAATTAGTTGACTCAGATT 59.851 38.462 0.00 0.00 39.87 2.40
5295 10319 7.308589 CCGTTCCAAATTAGTTGACTCAGATTT 60.309 37.037 0.00 0.00 39.87 2.17
5296 10320 8.717821 CGTTCCAAATTAGTTGACTCAGATTTA 58.282 33.333 0.00 0.00 39.87 1.40
5343 10367 8.964420 ACATGTTTTATTGTTAGAAACATCCG 57.036 30.769 9.88 4.58 45.70 4.18
5344 10368 8.573035 ACATGTTTTATTGTTAGAAACATCCGT 58.427 29.630 9.88 5.07 45.70 4.69
5359 10383 9.090103 AGAAACATCCGTATCTAGATAAATCCA 57.910 33.333 14.09 0.00 0.00 3.41
5360 10384 9.706691 GAAACATCCGTATCTAGATAAATCCAA 57.293 33.333 14.09 0.00 0.00 3.53
5361 10385 9.712305 AAACATCCGTATCTAGATAAATCCAAG 57.288 33.333 14.09 4.61 0.00 3.61
5362 10386 8.423906 ACATCCGTATCTAGATAAATCCAAGT 57.576 34.615 14.09 5.17 0.00 3.16
5363 10387 8.524487 ACATCCGTATCTAGATAAATCCAAGTC 58.476 37.037 14.09 0.00 0.00 3.01
5364 10388 7.142306 TCCGTATCTAGATAAATCCAAGTCG 57.858 40.000 14.09 9.70 0.00 4.18
5365 10389 6.938596 TCCGTATCTAGATAAATCCAAGTCGA 59.061 38.462 14.09 0.00 0.00 4.20
5366 10390 7.022384 CCGTATCTAGATAAATCCAAGTCGAC 58.978 42.308 14.09 7.70 0.00 4.20
5367 10391 7.094720 CCGTATCTAGATAAATCCAAGTCGACT 60.095 40.741 13.58 13.58 0.00 4.18
5368 10392 8.933807 CGTATCTAGATAAATCCAAGTCGACTA 58.066 37.037 20.39 3.26 0.00 2.59
5374 10398 8.438676 AGATAAATCCAAGTCGACTAATTTGG 57.561 34.615 27.14 25.28 41.09 3.28
5378 10402 3.991773 TCCAAGTCGACTAATTTGGAACG 59.008 43.478 26.91 8.02 44.38 3.95
5379 10403 3.124636 CCAAGTCGACTAATTTGGAACGG 59.875 47.826 23.86 7.40 42.05 4.44
5380 10404 3.947910 AGTCGACTAATTTGGAACGGA 57.052 42.857 18.46 0.00 0.00 4.69
5381 10405 3.846360 AGTCGACTAATTTGGAACGGAG 58.154 45.455 18.46 0.00 0.00 4.63
5382 10406 2.928116 GTCGACTAATTTGGAACGGAGG 59.072 50.000 8.70 0.00 0.00 4.30
5383 10407 2.093869 TCGACTAATTTGGAACGGAGGG 60.094 50.000 0.00 0.00 0.00 4.30
5384 10408 2.093869 CGACTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
5385 10409 3.532542 GACTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
5386 10410 2.910977 ACTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
5387 10411 4.098894 ACTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
5388 10412 3.345508 AATTTGGAACGGAGGGAGTAC 57.654 47.619 0.00 0.00 0.00 2.73
5522 10546 3.660111 GTGCAACACCTCCGCCAC 61.660 66.667 0.00 0.00 36.32 5.01
5718 10742 2.537792 TTTCTACGTGCTCCGCCGAG 62.538 60.000 0.00 0.00 41.42 4.63
5879 10905 4.867047 CAGTCTTGCTAAATCACAGTCGAT 59.133 41.667 0.00 0.00 0.00 3.59
5892 10918 7.905604 ATCACAGTCGATTGAGATTTTGTTA 57.094 32.000 15.52 0.00 0.00 2.41
5986 11012 9.515226 TTTCCTTATATATTATGCCACTTGACC 57.485 33.333 0.00 0.00 0.00 4.02
5988 11014 6.538742 CCTTATATATTATGCCACTTGACCGG 59.461 42.308 0.00 0.00 0.00 5.28
5995 11021 1.450211 CCACTTGACCGGGACTTGT 59.550 57.895 6.32 0.00 0.00 3.16
6014 11040 8.242739 GGACTTGTTTAAGTAGTCTTAGTCGAT 58.757 37.037 11.22 0.00 46.79 3.59
6047 11073 2.092212 CACACCCTAGGGCATGAATCTT 60.092 50.000 28.88 1.16 39.32 2.40
6252 11279 3.569304 CGTATCACTTATGGTGTTGCG 57.431 47.619 0.00 0.00 45.50 4.85
6256 11283 4.939509 ATCACTTATGGTGTTGCGTTAC 57.060 40.909 0.00 0.00 45.50 2.50
6265 11292 3.103007 GGTGTTGCGTTACAAACTGAAC 58.897 45.455 0.77 0.00 40.82 3.18
6280 11307 4.342862 ACTGAACAGTGCAAGACATACT 57.657 40.909 6.67 0.00 40.75 2.12
6281 11308 5.468540 ACTGAACAGTGCAAGACATACTA 57.531 39.130 6.67 0.00 40.75 1.82
6318 11345 1.834188 ACGGGATTGCTAAAACCAGG 58.166 50.000 0.00 0.00 29.40 4.45
6346 11373 0.323957 GGGGAGCGGTTTGTTAGACT 59.676 55.000 0.00 0.00 0.00 3.24
6347 11374 1.439679 GGGAGCGGTTTGTTAGACTG 58.560 55.000 0.00 0.00 0.00 3.51
6446 11473 5.121811 CAGATAGGGGTCAAGAACATTCTG 58.878 45.833 0.00 0.00 37.65 3.02
6468 11495 1.269723 GTCAACAAGGTGCCTAAAGCC 59.730 52.381 0.00 0.00 42.71 4.35
6485 11512 5.573380 AAAGCCTGCCAAGATAGATATCA 57.427 39.130 5.32 0.00 35.17 2.15
6513 11540 1.280421 GGAAGATGTGAAGAGCAGGGT 59.720 52.381 0.00 0.00 0.00 4.34
6536 11563 2.612212 GCTGGGACAATACGGTTATGTG 59.388 50.000 3.61 0.00 38.70 3.21
6537 11564 2.612212 CTGGGACAATACGGTTATGTGC 59.388 50.000 8.35 8.35 38.70 4.57
6538 11565 2.237643 TGGGACAATACGGTTATGTGCT 59.762 45.455 13.97 0.00 31.92 4.40
6584 11611 3.133542 GTGATGGATGAGATGACACCAGA 59.866 47.826 0.00 0.00 34.08 3.86
6605 11632 4.037565 AGACGAAACCAAATTGGAAACTCC 59.962 41.667 20.25 3.80 40.96 3.85
6617 11644 2.007608 GGAAACTCCATTCCTGTACGC 58.992 52.381 0.00 0.00 44.54 4.42
6618 11645 2.614481 GGAAACTCCATTCCTGTACGCA 60.614 50.000 0.00 0.00 44.54 5.24
6619 11646 2.851263 AACTCCATTCCTGTACGCAA 57.149 45.000 0.00 0.00 0.00 4.85
6620 11647 2.094762 ACTCCATTCCTGTACGCAAC 57.905 50.000 0.00 0.00 0.00 4.17
6621 11648 1.623811 ACTCCATTCCTGTACGCAACT 59.376 47.619 0.00 0.00 0.00 3.16
6622 11649 2.038557 ACTCCATTCCTGTACGCAACTT 59.961 45.455 0.00 0.00 0.00 2.66
6623 11650 3.074412 CTCCATTCCTGTACGCAACTTT 58.926 45.455 0.00 0.00 0.00 2.66
6624 11651 4.250464 CTCCATTCCTGTACGCAACTTTA 58.750 43.478 0.00 0.00 0.00 1.85
6625 11652 4.250464 TCCATTCCTGTACGCAACTTTAG 58.750 43.478 0.00 0.00 0.00 1.85
6626 11653 4.020928 TCCATTCCTGTACGCAACTTTAGA 60.021 41.667 0.00 0.00 0.00 2.10
6627 11654 4.876107 CCATTCCTGTACGCAACTTTAGAT 59.124 41.667 0.00 0.00 0.00 1.98
6628 11655 6.046593 CCATTCCTGTACGCAACTTTAGATA 58.953 40.000 0.00 0.00 0.00 1.98
6629 11656 6.706270 CCATTCCTGTACGCAACTTTAGATAT 59.294 38.462 0.00 0.00 0.00 1.63
6630 11657 7.870954 CCATTCCTGTACGCAACTTTAGATATA 59.129 37.037 0.00 0.00 0.00 0.86
6631 11658 9.256477 CATTCCTGTACGCAACTTTAGATATAA 57.744 33.333 0.00 0.00 0.00 0.98
6632 11659 8.638685 TTCCTGTACGCAACTTTAGATATAAC 57.361 34.615 0.00 0.00 0.00 1.89
6633 11660 8.004087 TCCTGTACGCAACTTTAGATATAACT 57.996 34.615 0.00 0.00 0.00 2.24
6634 11661 8.472413 TCCTGTACGCAACTTTAGATATAACTT 58.528 33.333 0.00 0.00 0.00 2.66
6635 11662 8.540492 CCTGTACGCAACTTTAGATATAACTTG 58.460 37.037 0.00 0.00 0.00 3.16
6636 11663 8.991243 TGTACGCAACTTTAGATATAACTTGT 57.009 30.769 0.00 0.00 0.00 3.16
6637 11664 9.426837 TGTACGCAACTTTAGATATAACTTGTT 57.573 29.630 0.00 0.00 0.00 2.83
6638 11665 9.685005 GTACGCAACTTTAGATATAACTTGTTG 57.315 33.333 13.59 13.59 37.27 3.33
6639 11666 7.748847 ACGCAACTTTAGATATAACTTGTTGG 58.251 34.615 16.74 12.30 35.50 3.77
6640 11667 7.604927 ACGCAACTTTAGATATAACTTGTTGGA 59.395 33.333 16.74 0.00 35.50 3.53
6641 11668 7.903431 CGCAACTTTAGATATAACTTGTTGGAC 59.097 37.037 16.74 7.40 35.50 4.02
6642 11669 8.726988 GCAACTTTAGATATAACTTGTTGGACA 58.273 33.333 16.74 0.00 35.50 4.02
6644 11671 9.787435 AACTTTAGATATAACTTGTTGGACACA 57.213 29.630 0.00 0.00 0.00 3.72
6645 11672 9.787435 ACTTTAGATATAACTTGTTGGACACAA 57.213 29.630 0.00 0.00 43.55 3.33
6656 11683 3.644966 TTGGACACAACTTTCTCCAGT 57.355 42.857 0.00 0.00 34.26 4.00
6657 11684 3.194005 TGGACACAACTTTCTCCAGTC 57.806 47.619 0.00 0.00 0.00 3.51
6658 11685 2.771943 TGGACACAACTTTCTCCAGTCT 59.228 45.455 0.00 0.00 0.00 3.24
6659 11686 3.199946 TGGACACAACTTTCTCCAGTCTT 59.800 43.478 0.00 0.00 0.00 3.01
6660 11687 3.561725 GGACACAACTTTCTCCAGTCTTG 59.438 47.826 0.00 0.00 0.00 3.02
6661 11688 4.442706 GACACAACTTTCTCCAGTCTTGA 58.557 43.478 0.00 0.00 0.00 3.02
6662 11689 5.041191 ACACAACTTTCTCCAGTCTTGAT 57.959 39.130 0.00 0.00 0.00 2.57
6663 11690 5.059833 ACACAACTTTCTCCAGTCTTGATC 58.940 41.667 0.00 0.00 0.00 2.92
6664 11691 5.059161 CACAACTTTCTCCAGTCTTGATCA 58.941 41.667 0.00 0.00 0.00 2.92
6665 11692 5.049818 CACAACTTTCTCCAGTCTTGATCAC 60.050 44.000 0.00 0.00 0.00 3.06
6666 11693 4.963318 ACTTTCTCCAGTCTTGATCACA 57.037 40.909 0.00 0.00 0.00 3.58
6667 11694 4.636249 ACTTTCTCCAGTCTTGATCACAC 58.364 43.478 0.00 0.00 0.00 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 3.894351 GCATTTCTTGCGCATAAACAG 57.106 42.857 12.75 5.05 42.54 3.16
72 73 0.963225 TCGTCACAAAGGGTCGATGA 59.037 50.000 0.00 0.00 0.00 2.92
76 77 0.165944 GCATTCGTCACAAAGGGTCG 59.834 55.000 0.00 0.00 0.00 4.79
77 78 1.197721 CTGCATTCGTCACAAAGGGTC 59.802 52.381 0.00 0.00 0.00 4.46
78 79 1.238439 CTGCATTCGTCACAAAGGGT 58.762 50.000 0.00 0.00 0.00 4.34
79 80 0.109597 GCTGCATTCGTCACAAAGGG 60.110 55.000 0.00 0.00 0.00 3.95
82 83 0.310543 GTGGCTGCATTCGTCACAAA 59.689 50.000 0.50 0.00 0.00 2.83
84 85 2.316867 CGTGGCTGCATTCGTCACA 61.317 57.895 9.50 0.00 0.00 3.58
218 223 1.591703 CTGGCACTGCGAGGAAGTA 59.408 57.895 5.16 0.00 30.86 2.24
315 332 3.164977 TGGCCTGGTGTGGTTCGA 61.165 61.111 3.32 0.00 0.00 3.71
414 431 1.915489 AGGGCATTCATGGTAGTGACA 59.085 47.619 0.00 0.00 0.00 3.58
488 525 0.109272 CGAGCGACCTTGAGCTACAA 60.109 55.000 0.00 0.00 44.69 2.41
490 527 1.874466 GCGAGCGACCTTGAGCTAC 60.874 63.158 0.00 0.00 44.69 3.58
555 595 0.808060 TTGTGTTTCTCAGTCGCGCA 60.808 50.000 8.75 0.00 0.00 6.09
728 788 3.181499 GCCTATATATACACTCGTGCGCT 60.181 47.826 9.73 0.00 0.00 5.92
1185 1278 9.237706 AGGGAGTATTTATTAAAGATCAAGGGA 57.762 33.333 0.00 0.00 0.00 4.20
1267 1465 5.821097 AGAAGCTAAAACCAATAGCCTCTT 58.179 37.500 2.15 0.00 41.94 2.85
1299 1498 0.885196 TACACCTGGGCAAAATTCGC 59.115 50.000 0.00 0.00 0.00 4.70
1311 1510 2.742053 AGTAGCAACGCAAATACACCTG 59.258 45.455 0.00 0.00 0.00 4.00
1323 1522 3.047796 ACGTGTTCAGTAAGTAGCAACG 58.952 45.455 0.00 0.00 0.00 4.10
1324 1523 4.046462 TCACGTGTTCAGTAAGTAGCAAC 58.954 43.478 16.51 0.00 0.00 4.17
1384 1615 1.065551 GCAGGCTTTCAGTTTCGTTGT 59.934 47.619 0.00 0.00 0.00 3.32
1520 2474 6.685527 AACTCAAAAGAGAAAGAAGTCACC 57.314 37.500 0.00 0.00 0.00 4.02
1559 2513 1.227089 GACCAGAGATCATGCGCGT 60.227 57.895 8.43 0.00 0.00 6.01
1566 2520 3.520696 TCCAGGAAAAGACCAGAGATCA 58.479 45.455 0.00 0.00 0.00 2.92
1572 2526 1.071699 TCGGTTCCAGGAAAAGACCAG 59.928 52.381 2.45 0.00 0.00 4.00
1603 2557 4.163078 CCCATATTTTTGCCACATTACCCA 59.837 41.667 0.00 0.00 0.00 4.51
1604 2558 4.407296 TCCCATATTTTTGCCACATTACCC 59.593 41.667 0.00 0.00 0.00 3.69
1607 2561 7.125507 AGTCATTCCCATATTTTTGCCACATTA 59.874 33.333 0.00 0.00 0.00 1.90
1608 2562 6.070078 AGTCATTCCCATATTTTTGCCACATT 60.070 34.615 0.00 0.00 0.00 2.71
1666 2620 6.436218 AGCTTTCGGGAAAAACCAACTATATT 59.564 34.615 0.00 0.00 41.20 1.28
1673 2627 3.822940 TCTAGCTTTCGGGAAAAACCAA 58.177 40.909 0.00 0.00 41.20 3.67
1683 2637 6.986904 ATCCTTTTAAGTTCTAGCTTTCGG 57.013 37.500 0.00 0.00 0.00 4.30
1858 2918 8.404107 TGTTCCCTGTTCCTTCTTATTTTAAG 57.596 34.615 0.00 0.00 0.00 1.85
1888 2948 2.832148 GCACGTCGACATCGTACGC 61.832 63.158 17.16 5.08 42.22 4.42
1929 2989 5.241403 TGATTGAAGCTCCAAGGTCTTAA 57.759 39.130 0.00 0.00 0.00 1.85
1946 3006 1.392589 ACGGGCAGCCTAAATGATTG 58.607 50.000 12.43 0.00 0.00 2.67
1947 3007 2.172717 ACTACGGGCAGCCTAAATGATT 59.827 45.455 12.43 0.00 0.00 2.57
1950 3010 1.299541 CACTACGGGCAGCCTAAATG 58.700 55.000 12.43 0.00 0.00 2.32
1951 3011 0.180406 CCACTACGGGCAGCCTAAAT 59.820 55.000 12.43 0.00 0.00 1.40
1987 3067 7.845037 ACACTAGTATCATGTGCATGCTATAT 58.155 34.615 20.33 7.63 38.65 0.86
1992 3072 7.889589 TTATACACTAGTATCATGTGCATGC 57.110 36.000 11.82 11.82 41.15 4.06
2184 3265 6.403049 TGCCGACTAGTCAATTTTAATGAGA 58.597 36.000 22.37 0.00 0.00 3.27
2205 3286 4.763073 TCATAGCTAGTATCATGCATGCC 58.237 43.478 22.25 11.72 0.00 4.40
2332 3413 5.815581 AGTCAAAACCTGGACATGCTTATA 58.184 37.500 0.00 0.00 36.50 0.98
2333 3414 4.666512 AGTCAAAACCTGGACATGCTTAT 58.333 39.130 0.00 0.00 36.50 1.73
2334 3415 4.098914 AGTCAAAACCTGGACATGCTTA 57.901 40.909 0.00 0.00 36.50 3.09
2335 3416 2.949447 AGTCAAAACCTGGACATGCTT 58.051 42.857 0.00 0.00 36.50 3.91
2395 3476 6.024552 TGAAAATATTGCAACCTTGGTCTC 57.975 37.500 0.00 0.00 0.00 3.36
2466 3564 7.210873 ACAAAGAAACACAAAACAAACTACCA 58.789 30.769 0.00 0.00 0.00 3.25
2498 3598 9.450807 CAAAGTGTATGGCATAATAAAAGTAGC 57.549 33.333 9.14 0.00 0.00 3.58
2688 4800 2.361483 TGGTCGCCGCCACTACTA 60.361 61.111 0.00 0.00 32.81 1.82
2697 4809 3.496131 CCAATTCCGTGGTCGCCG 61.496 66.667 0.00 0.00 33.63 6.46
2709 4821 0.704076 TGCCCTTGCCTCTACCAATT 59.296 50.000 0.00 0.00 36.33 2.32
2739 4851 1.000955 GAAGGGACGAACAGAGCTCAA 59.999 52.381 17.77 0.00 0.00 3.02
2742 4854 0.892063 GAGAAGGGACGAACAGAGCT 59.108 55.000 0.00 0.00 0.00 4.09
2743 4855 0.603569 TGAGAAGGGACGAACAGAGC 59.396 55.000 0.00 0.00 0.00 4.09
2744 4856 2.610727 GGTTGAGAAGGGACGAACAGAG 60.611 54.545 0.00 0.00 0.00 3.35
2746 4858 1.608283 GGGTTGAGAAGGGACGAACAG 60.608 57.143 0.00 0.00 0.00 3.16
2787 4900 5.941058 CGATCTGCTCTAAGTCCCTTCTATA 59.059 44.000 0.00 0.00 0.00 1.31
2788 4901 4.764823 CGATCTGCTCTAAGTCCCTTCTAT 59.235 45.833 0.00 0.00 0.00 1.98
2789 4902 4.138290 CGATCTGCTCTAAGTCCCTTCTA 58.862 47.826 0.00 0.00 0.00 2.10
2790 4903 2.955660 CGATCTGCTCTAAGTCCCTTCT 59.044 50.000 0.00 0.00 0.00 2.85
2791 4904 2.691011 ACGATCTGCTCTAAGTCCCTTC 59.309 50.000 0.00 0.00 0.00 3.46
2792 4905 2.428890 CACGATCTGCTCTAAGTCCCTT 59.571 50.000 0.00 0.00 0.00 3.95
2793 4906 2.028130 CACGATCTGCTCTAAGTCCCT 58.972 52.381 0.00 0.00 0.00 4.20
2794 4907 2.025155 TCACGATCTGCTCTAAGTCCC 58.975 52.381 0.00 0.00 0.00 4.46
2795 4908 2.423892 TGTCACGATCTGCTCTAAGTCC 59.576 50.000 0.00 0.00 0.00 3.85
2796 4909 3.766676 TGTCACGATCTGCTCTAAGTC 57.233 47.619 0.00 0.00 0.00 3.01
2813 4926 6.531948 CACTATGACTAGCCTTGTAAGTTGTC 59.468 42.308 0.00 0.00 0.00 3.18
3233 5347 8.718102 ATTGTAGCGTACATAGATTTTTCTGT 57.282 30.769 0.00 0.00 38.68 3.41
3464 5580 1.745890 CAGACCAGTCACCGTTCCA 59.254 57.895 0.00 0.00 0.00 3.53
4051 7339 1.490490 TGTCAAAAGAGACCACCTGCT 59.510 47.619 0.00 0.00 37.73 4.24
4108 7396 2.856231 AGTGGCCACATCCCCTATTTTA 59.144 45.455 36.39 0.00 0.00 1.52
4126 7414 0.249868 TCGGAGCAGTGACCAAAGTG 60.250 55.000 0.00 0.00 0.00 3.16
4144 7432 0.532573 TGACCCAGAATCACGAGCTC 59.467 55.000 2.73 2.73 0.00 4.09
4382 8055 2.808543 GCTCACCTCATTTGTCTTTCGT 59.191 45.455 0.00 0.00 0.00 3.85
4408 9342 9.820229 TCGTTCAAACAATAAATAAGTTAGCTG 57.180 29.630 0.00 0.00 0.00 4.24
4410 9344 8.786028 GCTCGTTCAAACAATAAATAAGTTAGC 58.214 33.333 0.00 0.00 0.00 3.09
4411 9345 9.820229 TGCTCGTTCAAACAATAAATAAGTTAG 57.180 29.630 0.00 0.00 0.00 2.34
4414 9348 6.801862 GCTGCTCGTTCAAACAATAAATAAGT 59.198 34.615 0.00 0.00 0.00 2.24
4415 9349 7.007725 CAGCTGCTCGTTCAAACAATAAATAAG 59.992 37.037 0.00 0.00 0.00 1.73
4417 9351 6.072728 ACAGCTGCTCGTTCAAACAATAAATA 60.073 34.615 15.27 0.00 0.00 1.40
4418 9352 5.156355 CAGCTGCTCGTTCAAACAATAAAT 58.844 37.500 0.00 0.00 0.00 1.40
4419 9353 4.036262 ACAGCTGCTCGTTCAAACAATAAA 59.964 37.500 15.27 0.00 0.00 1.40
4420 9354 3.563808 ACAGCTGCTCGTTCAAACAATAA 59.436 39.130 15.27 0.00 0.00 1.40
4421 9355 3.138304 ACAGCTGCTCGTTCAAACAATA 58.862 40.909 15.27 0.00 0.00 1.90
4422 9356 1.949525 ACAGCTGCTCGTTCAAACAAT 59.050 42.857 15.27 0.00 0.00 2.71
4441 9423 0.815734 TCGTCGAATCCCAGGAAGAC 59.184 55.000 0.00 9.11 0.00 3.01
4494 9476 0.612744 TCATCTGTGGAACGATGCCA 59.387 50.000 0.00 0.00 42.96 4.92
4556 9538 3.047877 GGAGTTGGCCCGTGTTCG 61.048 66.667 0.00 0.00 0.00 3.95
4587 9593 5.435557 GTGCTATAACATCGACAAATCTGC 58.564 41.667 0.00 0.00 0.00 4.26
4664 9677 1.067846 GTCGGTCATGCTGTACACTGA 60.068 52.381 0.00 0.00 0.00 3.41
4818 9831 2.935955 CTGTGTCGTTGCGGTTCC 59.064 61.111 0.00 0.00 0.00 3.62
4893 9906 2.482316 CCAAACACATATGGGCAGCATG 60.482 50.000 4.42 0.00 40.87 4.06
4894 9907 1.758280 CCAAACACATATGGGCAGCAT 59.242 47.619 4.42 0.00 32.87 3.79
4895 9908 1.184431 CCAAACACATATGGGCAGCA 58.816 50.000 4.42 0.00 32.87 4.41
4896 9909 1.185315 ACCAAACACATATGGGCAGC 58.815 50.000 4.42 0.00 41.17 5.25
4897 9910 2.094078 CCAACCAAACACATATGGGCAG 60.094 50.000 4.42 0.00 41.17 4.85
4901 9914 2.562298 AGCACCAACCAAACACATATGG 59.438 45.455 7.80 0.00 42.60 2.74
4902 9915 3.940209 AGCACCAACCAAACACATATG 57.060 42.857 0.00 0.00 0.00 1.78
4903 9916 3.258123 GGAAGCACCAACCAAACACATAT 59.742 43.478 0.00 0.00 38.79 1.78
4904 9917 2.625790 GGAAGCACCAACCAAACACATA 59.374 45.455 0.00 0.00 38.79 2.29
4905 9918 1.412343 GGAAGCACCAACCAAACACAT 59.588 47.619 0.00 0.00 38.79 3.21
4906 9919 0.820871 GGAAGCACCAACCAAACACA 59.179 50.000 0.00 0.00 38.79 3.72
4907 9920 0.820871 TGGAAGCACCAACCAAACAC 59.179 50.000 0.11 0.00 46.75 3.32
4908 9921 3.289797 TGGAAGCACCAACCAAACA 57.710 47.368 0.11 0.00 46.75 2.83
4932 9945 3.306166 AGAATAATCGGCTTTCACGTTCG 59.694 43.478 0.00 0.00 0.00 3.95
4946 9959 5.334724 GCATACAGCTCCTGCAAGAATAATC 60.335 44.000 6.77 0.00 42.74 1.75
4948 9961 3.879295 GCATACAGCTCCTGCAAGAATAA 59.121 43.478 6.77 0.00 42.74 1.40
4949 9962 3.470709 GCATACAGCTCCTGCAAGAATA 58.529 45.455 6.77 0.00 42.74 1.75
4950 9963 2.295885 GCATACAGCTCCTGCAAGAAT 58.704 47.619 6.77 0.00 42.74 2.40
4980 10004 0.387929 TGACGACGCTGAACTTCCTT 59.612 50.000 0.00 0.00 0.00 3.36
5096 10120 2.362369 TACAGCTGCCTGGAGAGCC 61.362 63.158 15.27 0.00 43.53 4.70
5180 10204 2.728817 CCATCCCTACGGAGTCGC 59.271 66.667 0.00 0.00 43.12 5.19
5247 10271 5.007724 CGGAAAGAGTAATATTTGAGGGTGC 59.992 44.000 0.00 0.00 0.00 5.01
5260 10284 7.716123 TCAACTAATTTGGAACGGAAAGAGTAA 59.284 33.333 0.00 0.00 35.69 2.24
5264 10288 6.059484 AGTCAACTAATTTGGAACGGAAAGA 58.941 36.000 0.00 0.00 35.69 2.52
5265 10289 6.017440 TGAGTCAACTAATTTGGAACGGAAAG 60.017 38.462 0.00 0.00 35.69 2.62
5266 10290 5.823570 TGAGTCAACTAATTTGGAACGGAAA 59.176 36.000 0.00 0.00 35.69 3.13
5267 10291 5.369833 TGAGTCAACTAATTTGGAACGGAA 58.630 37.500 0.00 0.00 35.69 4.30
5268 10292 4.963373 TGAGTCAACTAATTTGGAACGGA 58.037 39.130 0.00 0.00 35.69 4.69
5269 10293 4.994852 TCTGAGTCAACTAATTTGGAACGG 59.005 41.667 0.00 0.00 35.69 4.44
5270 10294 6.727824 ATCTGAGTCAACTAATTTGGAACG 57.272 37.500 0.00 0.00 35.69 3.95
5333 10357 9.090103 TGGATTTATCTAGATACGGATGTTTCT 57.910 33.333 12.12 0.00 39.36 2.52
5334 10358 9.706691 TTGGATTTATCTAGATACGGATGTTTC 57.293 33.333 12.12 1.70 0.00 2.78
5335 10359 9.712305 CTTGGATTTATCTAGATACGGATGTTT 57.288 33.333 12.12 0.00 0.00 2.83
5336 10360 8.871125 ACTTGGATTTATCTAGATACGGATGTT 58.129 33.333 12.12 0.00 0.00 2.71
5337 10361 8.423906 ACTTGGATTTATCTAGATACGGATGT 57.576 34.615 12.12 3.70 0.00 3.06
5338 10362 7.698550 CGACTTGGATTTATCTAGATACGGATG 59.301 40.741 12.12 3.15 0.00 3.51
5339 10363 7.610692 TCGACTTGGATTTATCTAGATACGGAT 59.389 37.037 12.12 6.99 0.00 4.18
5340 10364 6.938596 TCGACTTGGATTTATCTAGATACGGA 59.061 38.462 12.12 2.46 0.00 4.69
5341 10365 7.022384 GTCGACTTGGATTTATCTAGATACGG 58.978 42.308 12.12 1.83 0.00 4.02
5342 10366 7.808672 AGTCGACTTGGATTTATCTAGATACG 58.191 38.462 13.58 9.15 0.00 3.06
5348 10372 9.542462 CCAAATTAGTCGACTTGGATTTATCTA 57.458 33.333 25.44 0.00 40.72 1.98
5349 10373 8.265055 TCCAAATTAGTCGACTTGGATTTATCT 58.735 33.333 25.85 8.22 41.83 1.98
5350 10374 8.433421 TCCAAATTAGTCGACTTGGATTTATC 57.567 34.615 25.85 0.00 41.83 1.75
5351 10375 8.674607 GTTCCAAATTAGTCGACTTGGATTTAT 58.325 33.333 28.60 10.74 45.10 1.40
5352 10376 7.148540 CGTTCCAAATTAGTCGACTTGGATTTA 60.149 37.037 28.60 16.53 45.10 1.40
5353 10377 6.348213 CGTTCCAAATTAGTCGACTTGGATTT 60.348 38.462 28.60 23.84 45.10 2.17
5354 10378 5.121768 CGTTCCAAATTAGTCGACTTGGATT 59.878 40.000 28.60 20.56 45.10 3.01
5355 10379 4.630069 CGTTCCAAATTAGTCGACTTGGAT 59.370 41.667 28.60 16.81 45.10 3.41
5356 10380 3.991773 CGTTCCAAATTAGTCGACTTGGA 59.008 43.478 25.85 25.85 44.32 3.53
5357 10381 3.124636 CCGTTCCAAATTAGTCGACTTGG 59.875 47.826 25.44 23.81 39.80 3.61
5358 10382 3.991773 TCCGTTCCAAATTAGTCGACTTG 59.008 43.478 25.44 15.52 0.00 3.16
5359 10383 4.243270 CTCCGTTCCAAATTAGTCGACTT 58.757 43.478 25.44 3.08 0.00 3.01
5360 10384 3.368116 CCTCCGTTCCAAATTAGTCGACT 60.368 47.826 23.66 23.66 0.00 4.18
5361 10385 2.928116 CCTCCGTTCCAAATTAGTCGAC 59.072 50.000 7.70 7.70 0.00 4.20
5362 10386 2.093869 CCCTCCGTTCCAAATTAGTCGA 60.094 50.000 0.00 0.00 0.00 4.20
5363 10387 2.093869 TCCCTCCGTTCCAAATTAGTCG 60.094 50.000 0.00 0.00 0.00 4.18
5364 10388 3.055312 ACTCCCTCCGTTCCAAATTAGTC 60.055 47.826 0.00 0.00 0.00 2.59
5365 10389 2.910977 ACTCCCTCCGTTCCAAATTAGT 59.089 45.455 0.00 0.00 0.00 2.24
5366 10390 3.629142 ACTCCCTCCGTTCCAAATTAG 57.371 47.619 0.00 0.00 0.00 1.73
5367 10391 3.198417 GGTACTCCCTCCGTTCCAAATTA 59.802 47.826 0.00 0.00 0.00 1.40
5368 10392 2.026542 GGTACTCCCTCCGTTCCAAATT 60.027 50.000 0.00 0.00 0.00 1.82
5369 10393 1.558294 GGTACTCCCTCCGTTCCAAAT 59.442 52.381 0.00 0.00 0.00 2.32
5370 10394 0.978907 GGTACTCCCTCCGTTCCAAA 59.021 55.000 0.00 0.00 0.00 3.28
5371 10395 0.115745 AGGTACTCCCTCCGTTCCAA 59.884 55.000 0.00 0.00 40.71 3.53
5372 10396 0.613853 CAGGTACTCCCTCCGTTCCA 60.614 60.000 0.00 0.00 43.86 3.53
5373 10397 1.957765 GCAGGTACTCCCTCCGTTCC 61.958 65.000 0.00 0.00 43.86 3.62
5374 10398 1.516423 GCAGGTACTCCCTCCGTTC 59.484 63.158 0.00 0.00 43.86 3.95
5375 10399 1.988406 GGCAGGTACTCCCTCCGTT 60.988 63.158 0.00 0.00 43.86 4.44
5376 10400 2.363925 GGCAGGTACTCCCTCCGT 60.364 66.667 0.00 0.00 43.86 4.69
5377 10401 2.363795 TGGCAGGTACTCCCTCCG 60.364 66.667 0.00 0.00 43.86 4.63
5378 10402 1.612442 TGTGGCAGGTACTCCCTCC 60.612 63.158 0.00 0.00 43.86 4.30
5379 10403 0.905337 ACTGTGGCAGGTACTCCCTC 60.905 60.000 0.00 0.00 43.86 4.30
5381 10405 1.296715 CACTGTGGCAGGTACTCCC 59.703 63.158 0.00 0.00 34.60 4.30
5382 10406 1.263356 TACACTGTGGCAGGTACTCC 58.737 55.000 13.09 0.00 34.60 3.85
5383 10407 3.262420 CAATACACTGTGGCAGGTACTC 58.738 50.000 13.09 0.00 34.60 2.59
5384 10408 2.615493 GCAATACACTGTGGCAGGTACT 60.615 50.000 13.09 0.00 43.88 2.73
5385 10409 1.737793 GCAATACACTGTGGCAGGTAC 59.262 52.381 13.09 0.00 35.51 3.34
5386 10410 1.339631 GGCAATACACTGTGGCAGGTA 60.340 52.381 13.09 0.00 39.93 3.08
5387 10411 0.609131 GGCAATACACTGTGGCAGGT 60.609 55.000 13.09 0.00 39.93 4.00
5388 10412 1.647545 CGGCAATACACTGTGGCAGG 61.648 60.000 13.09 0.36 40.17 4.85
5392 10416 0.107214 ATCCCGGCAATACACTGTGG 60.107 55.000 13.09 0.00 0.00 4.17
5483 10507 3.459063 CCTCCCCGAACCGTCCTC 61.459 72.222 0.00 0.00 0.00 3.71
5529 10553 3.599792 GAAGTCGTCGCGGTTCGGA 62.600 63.158 6.13 0.00 39.05 4.55
5689 10713 1.798813 GCACGTAGAAACAAGTCAGGG 59.201 52.381 0.00 0.00 0.00 4.45
5718 10742 1.448985 TAATCAGCAACGCCAAGACC 58.551 50.000 0.00 0.00 0.00 3.85
5726 10750 9.817365 CTTATTATTCTGGAATAATCAGCAACG 57.183 33.333 23.47 7.76 45.72 4.10
5749 10773 2.778850 ACAGGTTTACCCACACCACTTA 59.221 45.455 0.00 0.00 35.25 2.24
5842 10866 6.473397 AGCAAGACTGAAGTTTAATCTTCG 57.527 37.500 17.39 14.72 44.53 3.79
5850 10874 6.543831 ACTGTGATTTAGCAAGACTGAAGTTT 59.456 34.615 0.00 0.00 0.00 2.66
5879 10905 7.655732 TCGACTGAGACATTAACAAAATCTCAA 59.344 33.333 4.03 0.00 43.81 3.02
5892 10918 6.581171 TCATATAGCATCGACTGAGACATT 57.419 37.500 0.00 0.00 0.00 2.71
5964 10990 6.538742 CCCGGTCAAGTGGCATAATATATAAG 59.461 42.308 0.00 0.00 0.00 1.73
5971 10997 0.916086 TCCCGGTCAAGTGGCATAAT 59.084 50.000 0.00 0.00 0.00 1.28
5986 11012 6.685657 ACTAAGACTACTTAAACAAGTCCCG 58.314 40.000 7.53 0.00 40.42 5.14
5988 11014 7.588512 TCGACTAAGACTACTTAAACAAGTCC 58.411 38.462 7.53 0.00 40.42 3.85
6014 11040 5.572252 CCCTAGGGTGTGGTTACATTTTAA 58.428 41.667 20.88 0.00 39.39 1.52
6024 11050 0.844661 TTCATGCCCTAGGGTGTGGT 60.845 55.000 28.96 8.09 37.65 4.16
6094 11120 7.834803 TCAGTCGATGCTATATTCATGAGATT 58.165 34.615 0.00 0.00 0.00 2.40
6236 11263 7.622528 AGTTTGTAACGCAACACCATAAGTGA 61.623 38.462 0.00 0.00 42.17 3.41
6240 11267 4.575236 TCAGTTTGTAACGCAACACCATAA 59.425 37.500 0.00 0.00 36.72 1.90
6247 11274 3.783943 CACTGTTCAGTTTGTAACGCAAC 59.216 43.478 2.47 0.00 36.72 4.17
6252 11279 5.028375 GTCTTGCACTGTTCAGTTTGTAAC 58.972 41.667 2.47 0.00 0.00 2.50
6256 11283 3.763097 TGTCTTGCACTGTTCAGTTTG 57.237 42.857 2.47 0.00 0.00 2.93
6265 11292 3.111838 CGAGCTAGTATGTCTTGCACTG 58.888 50.000 0.00 0.00 44.84 3.66
6280 11307 9.715121 AATCCCGTTTATAATTTTATCGAGCTA 57.285 29.630 0.00 0.00 0.00 3.32
6281 11308 8.504005 CAATCCCGTTTATAATTTTATCGAGCT 58.496 33.333 0.00 0.00 0.00 4.09
6318 11345 2.107141 CCGCTCCCCTCATCGAAC 59.893 66.667 0.00 0.00 0.00 3.95
6346 11373 1.434188 AGACATGTCTTCCCACACCA 58.566 50.000 22.89 0.00 36.31 4.17
6347 11374 2.674177 CGTAGACATGTCTTCCCACACC 60.674 54.545 32.14 10.10 40.93 4.16
6446 11473 2.226674 GCTTTAGGCACCTTGTTGACTC 59.773 50.000 0.00 0.00 35.90 3.36
6468 11495 6.649973 CCAGTCTTTGATATCTATCTTGGCAG 59.350 42.308 3.98 0.00 33.88 4.85
6485 11512 4.805609 GCTCTTCACATCTTCCCAGTCTTT 60.806 45.833 0.00 0.00 0.00 2.52
6513 11540 1.277579 TAACCGTATTGTCCCAGCCA 58.722 50.000 0.00 0.00 0.00 4.75
6523 11550 5.880332 AGTCATTCAAGCACATAACCGTATT 59.120 36.000 0.00 0.00 0.00 1.89
6536 11563 7.849804 TGGTAAAAGATCTAGTCATTCAAGC 57.150 36.000 0.00 0.00 0.00 4.01
6537 11564 9.388506 ACATGGTAAAAGATCTAGTCATTCAAG 57.611 33.333 0.00 0.00 0.00 3.02
6538 11565 9.166173 CACATGGTAAAAGATCTAGTCATTCAA 57.834 33.333 0.00 0.00 0.00 2.69
6584 11611 3.702045 TGGAGTTTCCAATTTGGTTTCGT 59.298 39.130 14.98 0.00 45.00 3.85
6605 11632 7.715265 ATATCTAAAGTTGCGTACAGGAATG 57.285 36.000 0.00 0.00 31.33 2.67
6613 11640 8.875803 CCAACAAGTTATATCTAAAGTTGCGTA 58.124 33.333 13.17 0.00 39.72 4.42
6614 11641 7.604927 TCCAACAAGTTATATCTAAAGTTGCGT 59.395 33.333 13.17 0.00 39.72 5.24
6615 11642 7.903431 GTCCAACAAGTTATATCTAAAGTTGCG 59.097 37.037 13.17 9.46 39.72 4.85
6616 11643 8.726988 TGTCCAACAAGTTATATCTAAAGTTGC 58.273 33.333 13.17 0.00 39.72 4.17
6618 11645 9.787435 TGTGTCCAACAAGTTATATCTAAAGTT 57.213 29.630 0.00 0.00 35.24 2.66
6619 11646 9.787435 TTGTGTCCAACAAGTTATATCTAAAGT 57.213 29.630 0.00 0.00 43.96 2.66
6636 11663 3.199946 AGACTGGAGAAAGTTGTGTCCAA 59.800 43.478 3.43 0.00 38.63 3.53
6637 11664 2.771943 AGACTGGAGAAAGTTGTGTCCA 59.228 45.455 2.11 2.11 37.52 4.02
6638 11665 3.477210 AGACTGGAGAAAGTTGTGTCC 57.523 47.619 0.00 0.00 0.00 4.02
6639 11666 4.442706 TCAAGACTGGAGAAAGTTGTGTC 58.557 43.478 0.00 0.00 0.00 3.67
6640 11667 4.487714 TCAAGACTGGAGAAAGTTGTGT 57.512 40.909 0.00 0.00 0.00 3.72
6641 11668 5.049818 GTGATCAAGACTGGAGAAAGTTGTG 60.050 44.000 0.00 0.00 0.00 3.33
6642 11669 5.059833 GTGATCAAGACTGGAGAAAGTTGT 58.940 41.667 0.00 0.00 0.00 3.32
6643 11670 5.049818 GTGTGATCAAGACTGGAGAAAGTTG 60.050 44.000 0.00 0.00 0.00 3.16
6644 11671 5.059833 GTGTGATCAAGACTGGAGAAAGTT 58.940 41.667 0.00 0.00 0.00 2.66
6645 11672 4.636249 GTGTGATCAAGACTGGAGAAAGT 58.364 43.478 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.