Multiple sequence alignment - TraesCS2B01G423800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G423800 chr2B 100.000 6298 0 0 1 6298 609956163 609949866 0.000000e+00 11631.0
1 TraesCS2B01G423800 chr2D 93.867 4011 168 29 797 4774 518033927 518029962 0.000000e+00 5973.0
2 TraesCS2B01G423800 chr2D 89.862 868 53 19 1 840 518034773 518033913 0.000000e+00 1083.0
3 TraesCS2B01G423800 chr2D 92.308 754 25 7 4883 5608 518029970 518029222 0.000000e+00 1040.0
4 TraesCS2B01G423800 chr2D 93.669 695 20 11 5625 6298 518029155 518028464 0.000000e+00 1018.0
5 TraesCS2B01G423800 chr2A 92.066 3630 151 45 672 4255 661721188 661717650 0.000000e+00 4981.0
6 TraesCS2B01G423800 chr2A 92.924 749 25 9 4883 5611 661715771 661715031 0.000000e+00 1064.0
7 TraesCS2B01G423800 chr2A 95.948 617 19 5 5683 6298 661714747 661714136 0.000000e+00 996.0
8 TraesCS2B01G423800 chr2A 91.880 665 30 16 1 655 661722125 661721475 0.000000e+00 907.0
9 TraesCS2B01G423800 chr2A 94.549 532 20 4 4239 4767 661716296 661715771 0.000000e+00 813.0
10 TraesCS2B01G423800 chr2A 92.843 503 13 7 3755 4255 661716963 661716482 0.000000e+00 708.0
11 TraesCS2B01G423800 chr2A 92.829 502 13 7 3755 4254 661717587 661717107 0.000000e+00 706.0
12 TraesCS2B01G423800 chr2A 97.619 42 1 0 4214 4255 661717067 661717026 8.760000e-09 73.1
13 TraesCS2B01G423800 chr1D 94.000 50 2 1 1655 1704 305589038 305589086 2.440000e-09 75.0
14 TraesCS2B01G423800 chr1A 94.000 50 2 1 1655 1704 384334587 384334635 2.440000e-09 75.0
15 TraesCS2B01G423800 chr4B 93.750 48 2 1 1657 1704 182242816 182242862 3.150000e-08 71.3
16 TraesCS2B01G423800 chr3D 93.750 48 1 2 1657 1704 454235682 454235637 3.150000e-08 71.3
17 TraesCS2B01G423800 chr4D 95.455 44 1 1 1661 1704 119751926 119751884 1.130000e-07 69.4
18 TraesCS2B01G423800 chr1B 95.455 44 1 1 1661 1704 370729982 370729940 1.130000e-07 69.4
19 TraesCS2B01G423800 chr3A 91.667 48 2 2 1657 1704 596367674 596367629 1.470000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G423800 chr2B 609949866 609956163 6297 True 11631.0000 11631 100.00000 1 6298 1 chr2B.!!$R1 6297
1 TraesCS2B01G423800 chr2D 518028464 518034773 6309 True 2278.5000 5973 92.42650 1 6298 4 chr2D.!!$R1 6297
2 TraesCS2B01G423800 chr2A 661714136 661722125 7989 True 1281.0125 4981 93.83225 1 6298 8 chr2A.!!$R1 6297

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
545 569 0.249073 CCGCGGGAGTAAGAGATGTG 60.249 60.000 20.1 0.00 0.00 3.21 F
1091 1426 0.389757 TCACACGGTTCGTCCATTGA 59.610 50.000 0.0 0.00 38.32 2.57 F
2200 2548 1.128507 TCGCAGCAAAATAGAGCAACG 59.871 47.619 0.0 0.00 34.17 4.10 F
3065 3415 2.430694 TCTCATTGTACCCCATGAGTCG 59.569 50.000 19.0 3.81 40.82 4.18 F
3639 3994 0.971959 TGTACACCGCGGTCCCTATT 60.972 55.000 31.8 10.96 0.00 1.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2259 2607 1.153309 TGCACCTGCTGGATGATCG 60.153 57.895 17.64 0.00 42.66 3.69 R
2893 3242 1.001860 CCACCGTTGGCATGGAAAATT 59.998 47.619 12.70 0.00 35.56 1.82 R
3625 3980 0.903942 TAAACAATAGGGACCGCGGT 59.096 50.000 34.89 34.89 0.00 5.68 R
4031 4935 1.065854 GTACAGGAGCCACAGAAGCAT 60.066 52.381 0.00 0.00 0.00 3.79 R
5510 7265 0.796870 TCTACAGCGAATGTGCGACG 60.797 55.000 4.15 0.00 43.80 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
175 178 2.081212 CGTTCGTCTGGCAGTCGAC 61.081 63.158 30.79 23.73 35.69 4.20
228 231 6.920758 CAGAATACCCTACAGAGATCGAAAAG 59.079 42.308 0.00 0.00 0.00 2.27
233 236 4.878397 CCCTACAGAGATCGAAAAGCAAAT 59.122 41.667 0.00 0.00 0.00 2.32
283 290 3.487042 GCAGCACAGATTAGAACAGCATG 60.487 47.826 0.00 0.00 46.00 4.06
291 298 3.634397 TTAGAACAGCATGGCTAGCTT 57.366 42.857 15.72 0.00 43.62 3.74
297 304 1.153005 GCATGGCTAGCTTGGCTCT 60.153 57.895 21.27 7.32 40.44 4.09
298 305 1.445716 GCATGGCTAGCTTGGCTCTG 61.446 60.000 21.27 18.17 40.44 3.35
299 306 1.153005 ATGGCTAGCTTGGCTCTGC 60.153 57.895 21.27 2.47 40.44 4.26
304 311 1.933247 CTAGCTTGGCTCTGCACTAC 58.067 55.000 0.00 0.00 40.44 2.73
335 346 2.754658 GGAACTCCTCCGAGCGGA 60.755 66.667 11.55 11.55 40.03 5.54
484 506 2.363147 GGGGCAGGAGACGAGACT 60.363 66.667 0.00 0.00 0.00 3.24
514 538 0.598562 GCGCGGAGAAGAGATGGATA 59.401 55.000 8.83 0.00 0.00 2.59
544 568 0.395311 TCCGCGGGAGTAAGAGATGT 60.395 55.000 27.83 0.00 0.00 3.06
545 569 0.249073 CCGCGGGAGTAAGAGATGTG 60.249 60.000 20.10 0.00 0.00 3.21
594 619 4.052229 CCCTCCCGCGCCGTATAG 62.052 72.222 0.00 0.00 0.00 1.31
741 1042 1.928868 CCAACTCTGGGCTTGGATTT 58.071 50.000 3.65 0.00 39.58 2.17
817 1120 2.363147 GCCAGAGTCCGACCCTCT 60.363 66.667 0.00 0.00 39.87 3.69
840 1170 2.640316 AAAAAGAAGCCAGAGTCCGT 57.360 45.000 0.00 0.00 0.00 4.69
933 1268 3.075005 CCTCCTCCCGCGGAAGAA 61.075 66.667 30.73 0.00 31.44 2.52
1091 1426 0.389757 TCACACGGTTCGTCCATTGA 59.610 50.000 0.00 0.00 38.32 2.57
1103 1438 3.621268 TCGTCCATTGATTCGATTTGGTC 59.379 43.478 0.00 0.00 0.00 4.02
1145 1480 3.704231 CTGAATGCCTGACCGGGGG 62.704 68.421 6.32 6.18 0.00 5.40
1146 1481 3.728373 GAATGCCTGACCGGGGGT 61.728 66.667 6.32 0.00 39.44 4.95
1186 1524 2.470938 GAAGCCCTGGAGGTGTGTCC 62.471 65.000 0.00 0.00 38.26 4.02
1246 1584 1.715862 CGTCTTCCTGCTCGATCCGA 61.716 60.000 0.00 0.00 0.00 4.55
1351 1689 6.573725 CGTTTCCGTTTGCTTAGATTATATGC 59.426 38.462 0.00 0.00 0.00 3.14
1390 1736 2.355209 GGAGTCGATTTTCTCCTGGCTT 60.355 50.000 11.55 0.00 44.68 4.35
1453 1799 6.028368 CGTGTAATTAGTTCGTGTCATCTCT 58.972 40.000 0.00 0.00 0.00 3.10
1475 1822 3.663025 TGGCCTGCTTTAATTTTGAAGC 58.337 40.909 3.32 11.61 46.36 3.86
1512 1859 3.686726 GTGTCTCTGCGAAGAATTGGAAT 59.313 43.478 0.00 0.00 0.00 3.01
1519 1866 4.671377 TGCGAAGAATTGGAATTGTATGC 58.329 39.130 0.00 0.00 0.00 3.14
1771 2119 3.758023 CACTTTTGATGCCAGGTACATGA 59.242 43.478 9.54 0.00 0.00 3.07
1910 2258 1.132453 GGAACAGCGATGCCTTTTACC 59.868 52.381 0.00 0.00 0.00 2.85
1930 2278 1.548582 CCTGCACCTCATTTGGTCCTT 60.549 52.381 0.00 0.00 38.45 3.36
2001 2349 5.694816 CACGCAACCTTCATTAATACAACA 58.305 37.500 0.00 0.00 0.00 3.33
2043 2391 9.160496 TGTCGTAAGTTCTTTTGTTTTACCTTA 57.840 29.630 0.00 0.00 39.48 2.69
2200 2548 1.128507 TCGCAGCAAAATAGAGCAACG 59.871 47.619 0.00 0.00 34.17 4.10
2295 2643 2.548057 TGCACTTGTCTGGATTTCGAAC 59.452 45.455 0.00 0.00 0.00 3.95
2433 2782 6.100279 ACTGCCATCTCATTCAGGTAATCTTA 59.900 38.462 0.00 0.00 0.00 2.10
2434 2783 7.083062 TGCCATCTCATTCAGGTAATCTTAT 57.917 36.000 0.00 0.00 0.00 1.73
2620 2969 9.761504 AGATCAGTTGACTTACTATCATTGATG 57.238 33.333 9.46 2.54 33.97 3.07
2624 2973 9.586435 CAGTTGACTTACTATCATTGATGTACA 57.414 33.333 9.46 0.00 0.00 2.90
2784 3133 3.378112 TGTTTGCATACCTATGAAGCTGC 59.622 43.478 4.77 0.00 35.75 5.25
2813 3162 2.579400 AGGGGTTAGGGTATGTTGTTCC 59.421 50.000 0.00 0.00 0.00 3.62
2832 3181 4.481368 TCCTGACCAATGTGTACCATAC 57.519 45.455 0.00 0.00 31.97 2.39
2893 3242 2.772077 TGGTTGCCGCATTCTAGTTA 57.228 45.000 0.00 0.00 0.00 2.24
2899 3248 5.515270 GGTTGCCGCATTCTAGTTAATTTTC 59.485 40.000 0.00 0.00 0.00 2.29
2901 3250 4.702612 TGCCGCATTCTAGTTAATTTTCCA 59.297 37.500 0.00 0.00 0.00 3.53
2909 3258 6.189677 TCTAGTTAATTTTCCATGCCAACG 57.810 37.500 0.00 0.00 0.00 4.10
2983 3332 4.439563 GGTTCACACCAAACACAACCTTAG 60.440 45.833 0.00 0.00 43.61 2.18
3058 3408 3.519510 CTCTCCTTTCTCATTGTACCCCA 59.480 47.826 0.00 0.00 0.00 4.96
3065 3415 2.430694 TCTCATTGTACCCCATGAGTCG 59.569 50.000 19.00 3.81 40.82 4.18
3073 3423 3.402628 ACCCCATGAGTCGCATATTAC 57.597 47.619 0.00 0.00 34.82 1.89
3129 3479 7.067372 TGCTTCATTACCATTAACCAATCTGAG 59.933 37.037 0.00 0.00 0.00 3.35
3145 3495 6.238953 CCAATCTGAGAATCTATTTGGCAAGG 60.239 42.308 0.00 0.00 33.52 3.61
3149 3499 5.126067 TGAGAATCTATTTGGCAAGGTAGC 58.874 41.667 13.70 4.36 34.92 3.58
3161 3511 4.830046 TGGCAAGGTAGCAGATTGTTTTTA 59.170 37.500 0.00 0.00 35.83 1.52
3163 3513 6.661377 TGGCAAGGTAGCAGATTGTTTTTATA 59.339 34.615 0.00 0.00 35.83 0.98
3164 3514 7.341769 TGGCAAGGTAGCAGATTGTTTTTATAT 59.658 33.333 0.00 0.00 35.83 0.86
3165 3515 8.197439 GGCAAGGTAGCAGATTGTTTTTATATT 58.803 33.333 0.00 0.00 35.83 1.28
3166 3516 9.023967 GCAAGGTAGCAGATTGTTTTTATATTG 57.976 33.333 0.00 0.00 0.00 1.90
3167 3517 9.023967 CAAGGTAGCAGATTGTTTTTATATTGC 57.976 33.333 0.00 0.00 0.00 3.56
3225 3579 6.769341 TGCTCAGCATAATATTGAGATTGTGT 59.231 34.615 0.00 0.00 40.54 3.72
3226 3580 7.933033 TGCTCAGCATAATATTGAGATTGTGTA 59.067 33.333 0.00 0.00 40.54 2.90
3227 3581 8.944029 GCTCAGCATAATATTGAGATTGTGTAT 58.056 33.333 6.23 0.00 40.54 2.29
3229 3583 9.783081 TCAGCATAATATTGAGATTGTGTATGT 57.217 29.630 0.00 0.00 32.26 2.29
3230 3584 9.821662 CAGCATAATATTGAGATTGTGTATGTG 57.178 33.333 0.00 0.00 32.26 3.21
3231 3585 9.783081 AGCATAATATTGAGATTGTGTATGTGA 57.217 29.630 0.00 0.00 32.26 3.58
3237 3591 9.842775 ATATTGAGATTGTGTATGTGAGATTGT 57.157 29.630 0.00 0.00 0.00 2.71
3238 3592 6.973229 TGAGATTGTGTATGTGAGATTGTG 57.027 37.500 0.00 0.00 0.00 3.33
3509 3863 8.865590 AGATTTTTATTTACACGTTTTGCAGT 57.134 26.923 0.00 0.00 0.00 4.40
3528 3882 9.809096 TTTGCAGTTTATCTTTTGAACACATTA 57.191 25.926 0.00 0.00 0.00 1.90
3625 3980 6.059484 CCTTACCTTCTCCAGTTTTTGTACA 58.941 40.000 0.00 0.00 0.00 2.90
3639 3994 0.971959 TGTACACCGCGGTCCCTATT 60.972 55.000 31.80 10.96 0.00 1.73
3689 4044 4.168760 GTGCAGAAGTTATGTTGGAATGC 58.831 43.478 0.00 0.00 0.00 3.56
3826 4201 7.885399 CCTTTCCCTTAATATTGATCTAGTGGG 59.115 40.741 0.00 0.00 0.00 4.61
3846 4221 3.092301 GGATTGGCAGGCTTTTACTTCT 58.908 45.455 0.00 0.00 0.00 2.85
4064 5589 8.764558 TGTGGCTCCTGTACTTCTTTTAATATA 58.235 33.333 0.00 0.00 0.00 0.86
4121 5646 0.702902 AGACTTACGAGGTCTCCCCA 59.297 55.000 0.00 0.00 39.52 4.96
4247 5775 8.856153 TTTATTTCTGTTAACAGCTATGTCCA 57.144 30.769 27.49 7.88 43.46 4.02
4489 6213 1.273438 ACGGGTCCTGGTATGTACCTT 60.273 52.381 10.36 0.00 46.58 3.50
4490 6214 1.411612 CGGGTCCTGGTATGTACCTTC 59.588 57.143 10.36 0.00 46.58 3.46
4499 6223 6.272792 TCCTGGTATGTACCTTCACCTTTTTA 59.727 38.462 10.36 0.00 46.58 1.52
4534 6258 6.439375 TCACTACTCATGGTATGTACTTTGGT 59.561 38.462 0.00 0.00 0.00 3.67
4541 6265 8.415950 TCATGGTATGTACTTTGGTTTTCAAT 57.584 30.769 0.00 0.00 34.98 2.57
4602 6326 1.691196 TGAAGGGTTTGACTGGCTTG 58.309 50.000 0.00 0.00 0.00 4.01
4614 6338 1.027357 CTGGCTTGACACTGTTGCTT 58.973 50.000 0.00 0.00 0.00 3.91
4624 6348 3.674997 ACACTGTTGCTTCCGTTGATAT 58.325 40.909 0.00 0.00 0.00 1.63
4771 6500 9.664332 AATGATAGCTATTGACATCAGGTTATC 57.336 33.333 7.87 0.00 31.35 1.75
4772 6501 8.427902 TGATAGCTATTGACATCAGGTTATCT 57.572 34.615 7.87 0.00 0.00 1.98
4773 6502 8.874156 TGATAGCTATTGACATCAGGTTATCTT 58.126 33.333 7.87 0.00 0.00 2.40
4774 6503 9.364989 GATAGCTATTGACATCAGGTTATCTTC 57.635 37.037 7.87 0.00 0.00 2.87
4775 6504 7.129457 AGCTATTGACATCAGGTTATCTTCA 57.871 36.000 0.00 0.00 0.00 3.02
4776 6505 7.215789 AGCTATTGACATCAGGTTATCTTCAG 58.784 38.462 0.00 0.00 0.00 3.02
4777 6506 6.426328 GCTATTGACATCAGGTTATCTTCAGG 59.574 42.308 0.00 0.00 0.00 3.86
4778 6507 4.142609 TGACATCAGGTTATCTTCAGGC 57.857 45.455 0.00 0.00 0.00 4.85
4779 6508 3.776969 TGACATCAGGTTATCTTCAGGCT 59.223 43.478 0.00 0.00 0.00 4.58
4780 6509 4.125703 GACATCAGGTTATCTTCAGGCTG 58.874 47.826 8.58 8.58 0.00 4.85
4781 6510 3.521126 ACATCAGGTTATCTTCAGGCTGT 59.479 43.478 15.27 0.00 0.00 4.40
4782 6511 4.018960 ACATCAGGTTATCTTCAGGCTGTT 60.019 41.667 15.27 1.04 0.00 3.16
4783 6512 4.640771 TCAGGTTATCTTCAGGCTGTTT 57.359 40.909 15.27 0.68 0.00 2.83
4784 6513 4.985538 TCAGGTTATCTTCAGGCTGTTTT 58.014 39.130 15.27 1.04 0.00 2.43
4785 6514 5.385198 TCAGGTTATCTTCAGGCTGTTTTT 58.615 37.500 15.27 1.40 0.00 1.94
4811 6540 8.830915 TTTTTGGGATAAATAGATGTAAGGCA 57.169 30.769 0.00 0.00 0.00 4.75
4812 6541 8.830915 TTTTGGGATAAATAGATGTAAGGCAA 57.169 30.769 0.00 0.00 0.00 4.52
4813 6542 8.830915 TTTGGGATAAATAGATGTAAGGCAAA 57.169 30.769 0.00 0.00 0.00 3.68
4814 6543 9.432982 TTTGGGATAAATAGATGTAAGGCAAAT 57.567 29.630 0.00 0.00 0.00 2.32
4832 6561 6.817270 GCAAATATACATTGCCAAGTTGAG 57.183 37.500 3.87 0.00 45.73 3.02
4833 6562 5.232838 GCAAATATACATTGCCAAGTTGAGC 59.767 40.000 3.87 6.90 45.73 4.26
4834 6563 6.567050 CAAATATACATTGCCAAGTTGAGCT 58.433 36.000 3.87 0.00 0.00 4.09
4835 6564 6.780457 AATATACATTGCCAAGTTGAGCTT 57.220 33.333 3.87 0.00 38.08 3.74
4849 6578 6.917217 AGTTGAGCTTGATAGAATTAGCAC 57.083 37.500 0.00 0.00 36.11 4.40
4850 6579 6.648192 AGTTGAGCTTGATAGAATTAGCACT 58.352 36.000 0.00 0.00 36.11 4.40
4851 6580 6.760770 AGTTGAGCTTGATAGAATTAGCACTC 59.239 38.462 0.00 0.00 36.11 3.51
4852 6581 6.477053 TGAGCTTGATAGAATTAGCACTCT 57.523 37.500 0.00 0.00 36.11 3.24
4853 6582 7.588497 TGAGCTTGATAGAATTAGCACTCTA 57.412 36.000 0.00 0.00 36.11 2.43
4854 6583 8.011844 TGAGCTTGATAGAATTAGCACTCTAA 57.988 34.615 0.00 0.00 38.97 2.10
4855 6584 8.478066 TGAGCTTGATAGAATTAGCACTCTAAA 58.522 33.333 0.00 0.00 38.21 1.85
4856 6585 9.319143 GAGCTTGATAGAATTAGCACTCTAAAA 57.681 33.333 0.00 0.00 38.21 1.52
4857 6586 9.323985 AGCTTGATAGAATTAGCACTCTAAAAG 57.676 33.333 0.00 0.00 38.21 2.27
4858 6587 9.103861 GCTTGATAGAATTAGCACTCTAAAAGT 57.896 33.333 0.00 0.00 38.21 2.66
4864 6593 8.549338 AGAATTAGCACTCTAAAAGTTACACC 57.451 34.615 0.00 0.00 38.21 4.16
4865 6594 8.154856 AGAATTAGCACTCTAAAAGTTACACCA 58.845 33.333 0.00 0.00 38.21 4.17
4866 6595 8.685838 AATTAGCACTCTAAAAGTTACACCAA 57.314 30.769 0.00 0.00 38.21 3.67
4867 6596 8.685838 ATTAGCACTCTAAAAGTTACACCAAA 57.314 30.769 0.00 0.00 38.21 3.28
4868 6597 8.508883 TTAGCACTCTAAAAGTTACACCAAAA 57.491 30.769 0.00 0.00 35.45 2.44
4869 6598 7.582667 AGCACTCTAAAAGTTACACCAAAAT 57.417 32.000 0.00 0.00 35.45 1.82
4870 6599 8.685838 AGCACTCTAAAAGTTACACCAAAATA 57.314 30.769 0.00 0.00 35.45 1.40
4871 6600 8.784043 AGCACTCTAAAAGTTACACCAAAATAG 58.216 33.333 0.00 0.00 35.45 1.73
4872 6601 8.565416 GCACTCTAAAAGTTACACCAAAATAGT 58.435 33.333 0.00 0.00 35.45 2.12
4880 6609 9.524106 AAAGTTACACCAAAATAGTTGTAAAGC 57.476 29.630 0.00 0.00 0.00 3.51
4881 6610 8.459911 AGTTACACCAAAATAGTTGTAAAGCT 57.540 30.769 0.00 0.00 0.00 3.74
4917 6646 5.641709 TGTTGTGAAGTCGCAAATTAACAA 58.358 33.333 8.78 0.00 46.34 2.83
4932 6661 6.824305 AATTAACAATGACCTCTTCACTGG 57.176 37.500 0.00 0.00 35.66 4.00
4993 6722 2.875933 CCTTGCTCTTACGAACCAAACA 59.124 45.455 0.00 0.00 0.00 2.83
5066 6795 5.804639 TGGCTGAAGACTAGCATTTTTCTA 58.195 37.500 0.00 0.00 42.88 2.10
5090 6819 9.685828 CTAGTTATATTTGCTTGTCTCTAGTCC 57.314 37.037 0.00 0.00 0.00 3.85
5222 6951 3.118112 AGGGATATGTTCTGGAAGCAGTG 60.118 47.826 0.00 0.00 0.00 3.66
5315 7044 4.082949 TGCTAGTACGCGCTATATGTGAAT 60.083 41.667 5.73 0.00 0.00 2.57
5388 7118 3.127548 GTGGCTCATTGATGTTGTACAGG 59.872 47.826 0.00 0.00 0.00 4.00
5405 7145 7.241042 TGTACAGGATATATAGGCACCTTTC 57.759 40.000 0.00 0.00 0.00 2.62
5532 7287 1.067693 CGCACATTCGCTGTAGAACA 58.932 50.000 0.00 0.00 35.91 3.18
5533 7288 1.660607 CGCACATTCGCTGTAGAACAT 59.339 47.619 0.00 0.00 35.91 2.71
5543 7298 3.664107 GCTGTAGAACATTGTGTCTGGA 58.336 45.455 10.07 0.00 0.00 3.86
5549 7304 2.839486 ACATTGTGTCTGGACGATGT 57.161 45.000 0.00 0.00 43.40 3.06
5559 7314 4.036852 TGTCTGGACGATGTAGCTCTTATG 59.963 45.833 0.00 0.00 0.00 1.90
5561 7316 4.645136 TCTGGACGATGTAGCTCTTATGTT 59.355 41.667 0.00 0.00 0.00 2.71
5562 7317 4.682787 TGGACGATGTAGCTCTTATGTTG 58.317 43.478 0.00 0.00 0.00 3.33
5583 7339 5.321959 TGAAATGCACAACTGAAAACTCA 57.678 34.783 0.00 0.00 0.00 3.41
5588 7344 3.243035 TGCACAACTGAAAACTCATTCGG 60.243 43.478 0.00 0.00 40.74 4.30
5594 7350 4.058817 ACTGAAAACTCATTCGGTCTGTC 58.941 43.478 0.00 0.00 43.71 3.51
5647 7473 9.871299 GTATATACGTACATATCAGCTGATCTG 57.129 37.037 31.92 30.97 44.21 2.90
5713 7707 7.755591 TCTGTAGTAGTATGTTGAAACGTAGG 58.244 38.462 0.00 0.00 31.48 3.18
5724 7718 4.545823 TGAAACGTAGGTTCAGCTTTTG 57.454 40.909 0.52 0.00 34.62 2.44
5725 7719 3.942748 TGAAACGTAGGTTCAGCTTTTGT 59.057 39.130 0.52 0.00 34.62 2.83
5767 7762 5.401531 TCAGGTTCCAGTACAAGACATAC 57.598 43.478 0.00 0.00 0.00 2.39
5770 7765 6.377429 TCAGGTTCCAGTACAAGACATACTAG 59.623 42.308 0.00 0.00 31.53 2.57
5771 7766 6.153000 CAGGTTCCAGTACAAGACATACTAGT 59.847 42.308 0.00 0.00 31.53 2.57
5772 7767 7.338703 CAGGTTCCAGTACAAGACATACTAGTA 59.661 40.741 4.77 4.77 31.53 1.82
5774 7769 9.347240 GGTTCCAGTACAAGACATACTAGTATA 57.653 37.037 15.03 0.00 31.53 1.47
6024 8023 4.431131 CCCCAGCGCCCAGTTGAT 62.431 66.667 2.29 0.00 32.33 2.57
6175 8174 0.745486 CGATCAGCAGGTTGATGGCA 60.745 55.000 3.25 0.00 37.90 4.92
6181 8180 1.926511 GCAGGTTGATGGCACCGAAG 61.927 60.000 0.00 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 7.550551 TCTGCATTAATTACTTCCTTCTGTCTG 59.449 37.037 0.00 0.00 0.00 3.51
19 20 7.849804 TCTGCATTAATTACTTCCTTCTGTC 57.150 36.000 0.00 0.00 0.00 3.51
20 22 8.680903 CAATCTGCATTAATTACTTCCTTCTGT 58.319 33.333 0.00 0.00 0.00 3.41
228 231 2.230864 GTTAACTGCGACGACATTTGC 58.769 47.619 0.00 0.00 0.00 3.68
233 236 0.669619 TGAGGTTAACTGCGACGACA 59.330 50.000 5.42 0.00 0.00 4.35
265 268 3.276857 AGCCATGCTGTTCTAATCTGTG 58.723 45.455 0.00 0.00 37.57 3.66
266 269 3.641434 AGCCATGCTGTTCTAATCTGT 57.359 42.857 0.00 0.00 37.57 3.41
267 270 3.497640 GCTAGCCATGCTGTTCTAATCTG 59.502 47.826 2.29 0.00 40.10 2.90
271 274 3.273434 CAAGCTAGCCATGCTGTTCTAA 58.727 45.455 12.13 0.00 40.10 2.10
272 275 2.420547 CCAAGCTAGCCATGCTGTTCTA 60.421 50.000 12.13 0.00 40.10 2.10
275 278 1.318158 GCCAAGCTAGCCATGCTGTT 61.318 55.000 12.13 0.00 40.10 3.16
277 280 1.445716 GAGCCAAGCTAGCCATGCTG 61.446 60.000 22.54 8.75 39.88 4.41
278 281 1.153005 GAGCCAAGCTAGCCATGCT 60.153 57.895 18.95 18.95 39.88 3.79
279 282 1.153005 AGAGCCAAGCTAGCCATGC 60.153 57.895 12.13 11.42 39.88 4.06
283 290 2.111582 GTGCAGAGCCAAGCTAGCC 61.112 63.158 12.13 0.00 39.88 3.93
291 298 1.207089 GGTACATGTAGTGCAGAGCCA 59.793 52.381 5.62 0.00 34.11 4.75
297 304 1.675714 GCAGCAGGTACATGTAGTGCA 60.676 52.381 29.05 2.45 36.57 4.57
298 305 1.009829 GCAGCAGGTACATGTAGTGC 58.990 55.000 23.81 23.81 0.00 4.40
299 306 1.280982 CGCAGCAGGTACATGTAGTG 58.719 55.000 5.62 8.22 0.00 2.74
304 311 0.391661 AGTTCCGCAGCAGGTACATG 60.392 55.000 2.43 2.43 0.00 3.21
484 506 2.523168 TCCGCGCCATCCCATCTA 60.523 61.111 0.00 0.00 0.00 1.98
537 561 2.370445 CCCGGCCTTCCACATCTCT 61.370 63.158 0.00 0.00 0.00 3.10
593 618 4.476113 TGATCCCAACAGATTTCCATCTCT 59.524 41.667 0.00 0.00 37.71 3.10
594 619 4.785301 TGATCCCAACAGATTTCCATCTC 58.215 43.478 0.00 0.00 37.71 2.75
634 659 4.465632 ACCTGCACATCGTAACAGATTA 57.534 40.909 0.00 0.00 31.67 1.75
741 1042 0.321564 CCAGTTCCAGATGTGCCGAA 60.322 55.000 0.00 0.00 0.00 4.30
795 1098 1.216710 GGTCGGACTCTGGCTTCTG 59.783 63.158 8.23 0.00 0.00 3.02
840 1170 4.100344 TCTCGATTCATTTTATCCCGGACA 59.900 41.667 0.73 0.00 0.00 4.02
854 1184 0.809385 GTGGACGGACTCTCGATTCA 59.191 55.000 0.00 0.00 0.00 2.57
1074 1409 2.073816 GAATCAATGGACGAACCGTGT 58.926 47.619 0.00 0.00 41.37 4.49
1119 1454 2.610859 AGGCATTCAGACCCCGGT 60.611 61.111 0.00 0.00 0.00 5.28
1145 1480 2.409870 CCTGCGCTCAAATCCCCAC 61.410 63.158 9.73 0.00 0.00 4.61
1146 1481 2.045045 CCTGCGCTCAAATCCCCA 60.045 61.111 9.73 0.00 0.00 4.96
1186 1524 1.004610 CAGCAGCATGACGATTAACCG 60.005 52.381 0.00 0.00 39.69 4.44
1351 1689 5.859114 CGACTCCAAACATCGGATATCTTAG 59.141 44.000 2.05 0.00 32.22 2.18
1386 1732 1.318158 AATAGCTGCCAGCACAAGCC 61.318 55.000 20.53 0.00 45.56 4.35
1390 1736 3.594568 GCAATAGCTGCCAGCACA 58.405 55.556 20.53 6.46 45.56 4.57
1453 1799 4.064388 GCTTCAAAATTAAAGCAGGCCAA 58.936 39.130 5.01 0.00 45.67 4.52
1512 1859 2.240921 TCAGGCACTTATGGGCATACAA 59.759 45.455 5.10 0.00 34.60 2.41
1519 1866 5.132502 TCAAACATATCAGGCACTTATGGG 58.867 41.667 0.00 0.00 34.45 4.00
1560 1907 7.446931 TGAATAAGCTGTCAAACATTAGAACCA 59.553 33.333 0.00 0.00 0.00 3.67
1623 1971 9.453572 TGCTAATGAAAAACAGAGAACAGATAT 57.546 29.630 0.00 0.00 0.00 1.63
1624 1972 8.846943 TGCTAATGAAAAACAGAGAACAGATA 57.153 30.769 0.00 0.00 0.00 1.98
1771 2119 3.123273 ACACCAGCCCTCCATATAAACT 58.877 45.455 0.00 0.00 0.00 2.66
1930 2278 3.081061 CAGCCACATACCTAACAGCAAA 58.919 45.455 0.00 0.00 0.00 3.68
1974 2322 3.932545 TTAATGAAGGTTGCGTGCATT 57.067 38.095 0.00 0.00 34.05 3.56
2001 2349 8.603242 ACTTACGACATTACTTTGAGATTGTT 57.397 30.769 0.00 0.00 0.00 2.83
2043 2391 9.726438 GCCCTTCAAATATACACATATCTAACT 57.274 33.333 0.00 0.00 0.00 2.24
2200 2548 1.200020 GTGTAGCAGATTGTGGGTTGC 59.800 52.381 0.00 0.00 36.83 4.17
2259 2607 1.153309 TGCACCTGCTGGATGATCG 60.153 57.895 17.64 0.00 42.66 3.69
2311 2660 8.561738 ACATATTGAAAACTACACTTCGGAAT 57.438 30.769 0.00 0.00 0.00 3.01
2433 2782 5.869649 AGGCCCGCAAATTTAGAATAAAT 57.130 34.783 0.00 0.00 0.00 1.40
2434 2783 6.969993 ATAGGCCCGCAAATTTAGAATAAA 57.030 33.333 0.00 0.00 0.00 1.40
2445 2794 2.729194 ACATTACAATAGGCCCGCAAA 58.271 42.857 0.00 0.00 0.00 3.68
2450 2799 7.908453 ACTATAGAGAACATTACAATAGGCCC 58.092 38.462 6.78 0.00 0.00 5.80
2451 2800 8.585881 TGACTATAGAGAACATTACAATAGGCC 58.414 37.037 6.78 0.00 0.00 5.19
2618 2967 7.722728 AGTCCATGCTTGAAATGATATGTACAT 59.277 33.333 13.93 13.93 0.00 2.29
2620 2969 7.502120 AGTCCATGCTTGAAATGATATGTAC 57.498 36.000 0.22 0.00 0.00 2.90
2624 2973 9.445878 CTACATAGTCCATGCTTGAAATGATAT 57.554 33.333 0.22 0.00 38.29 1.63
2858 3207 3.306919 GCAACCATCCAAACAATGACCAT 60.307 43.478 0.00 0.00 0.00 3.55
2893 3242 1.001860 CCACCGTTGGCATGGAAAATT 59.998 47.619 12.70 0.00 35.56 1.82
2909 3258 4.629634 GCAATGTTTTTAGTAATGGCCACC 59.370 41.667 8.16 0.00 0.00 4.61
2983 3332 3.560068 GCCATAACTGGTGCTGTATACAC 59.440 47.826 0.08 0.16 45.10 2.90
3009 3359 6.658849 ACATAATTGACACATTACTGCCCTA 58.341 36.000 0.00 0.00 0.00 3.53
3058 3408 5.182487 TGTGGTTTGTAATATGCGACTCAT 58.818 37.500 0.00 0.00 39.17 2.90
3065 3415 7.145932 AGTCTTCTTGTGGTTTGTAATATGC 57.854 36.000 0.00 0.00 0.00 3.14
3073 3423 7.227512 AGTGATAGAAAGTCTTCTTGTGGTTTG 59.772 37.037 0.00 0.00 42.17 2.93
3118 3468 6.189859 TGCCAAATAGATTCTCAGATTGGTT 58.810 36.000 15.37 0.00 38.43 3.67
3129 3479 5.126067 TCTGCTACCTTGCCAAATAGATTC 58.874 41.667 0.68 0.00 0.00 2.52
3166 3516 6.728200 TGCACTAGTTCTTTATGCATTATGC 58.272 36.000 10.65 10.65 41.18 3.14
3167 3517 7.377928 GCTTGCACTAGTTCTTTATGCATTATG 59.622 37.037 3.54 0.00 45.13 1.90
3171 3521 4.946157 AGCTTGCACTAGTTCTTTATGCAT 59.054 37.500 3.79 3.79 45.13 3.96
3191 3541 4.686191 ATTATGCTGAGCAGAGTAAGCT 57.314 40.909 14.36 0.00 43.65 3.74
3225 3579 7.877612 ACAAACTCACATACACAATCTCACATA 59.122 33.333 0.00 0.00 0.00 2.29
3226 3580 6.712095 ACAAACTCACATACACAATCTCACAT 59.288 34.615 0.00 0.00 0.00 3.21
3227 3581 6.054941 ACAAACTCACATACACAATCTCACA 58.945 36.000 0.00 0.00 0.00 3.58
3228 3582 6.545504 ACAAACTCACATACACAATCTCAC 57.454 37.500 0.00 0.00 0.00 3.51
3229 3583 8.846943 ATAACAAACTCACATACACAATCTCA 57.153 30.769 0.00 0.00 0.00 3.27
3230 3584 9.760660 GAATAACAAACTCACATACACAATCTC 57.239 33.333 0.00 0.00 0.00 2.75
3231 3585 9.507329 AGAATAACAAACTCACATACACAATCT 57.493 29.630 0.00 0.00 0.00 2.40
3232 3586 9.760660 GAGAATAACAAACTCACATACACAATC 57.239 33.333 0.00 0.00 0.00 2.67
3233 3587 9.283768 TGAGAATAACAAACTCACATACACAAT 57.716 29.630 0.00 0.00 36.04 2.71
3234 3588 8.669946 TGAGAATAACAAACTCACATACACAA 57.330 30.769 0.00 0.00 36.04 3.33
3235 3589 8.669946 TTGAGAATAACAAACTCACATACACA 57.330 30.769 0.00 0.00 39.80 3.72
3276 3630 7.262772 AGATATTTCATGGACATTGCAAGTTG 58.737 34.615 4.94 1.30 0.00 3.16
3310 3664 3.225104 ACCAGCATGACAGAAATGTGTT 58.775 40.909 0.00 0.00 39.69 3.32
3466 3820 1.339610 TCTCACCAAAAACGGCAATGG 59.660 47.619 0.00 0.00 38.91 3.16
3500 3854 7.958674 TGTGTTCAAAAGATAAACTGCAAAAC 58.041 30.769 0.00 0.00 0.00 2.43
3625 3980 0.903942 TAAACAATAGGGACCGCGGT 59.096 50.000 34.89 34.89 0.00 5.68
3639 3994 7.093945 GGGAGCTTCTGGATTTATTGTTAAACA 60.094 37.037 0.00 0.00 30.33 2.83
3662 4017 3.411446 CAACATAACTTCTGCACAGGGA 58.589 45.455 0.00 0.00 0.00 4.20
3689 4044 6.817765 TTATTTGGTAAAAGAGCAGTCCTG 57.182 37.500 0.00 0.00 36.76 3.86
3731 4086 6.243811 TGAGAAAGTAGAGACTCGAGAAAC 57.756 41.667 21.68 9.99 33.58 2.78
3826 4201 4.790765 AAGAAGTAAAAGCCTGCCAATC 57.209 40.909 0.00 0.00 0.00 2.67
3846 4221 4.804108 CTTGATGGATTGTACGGCAAAAA 58.196 39.130 0.00 0.00 40.91 1.94
3889 4793 5.887754 ACACTGGTAACTGGATTTTGGTAT 58.112 37.500 0.00 0.00 40.36 2.73
4031 4935 1.065854 GTACAGGAGCCACAGAAGCAT 60.066 52.381 0.00 0.00 0.00 3.79
4121 5646 8.206867 TGTGAGAGCTGCAATTCTACTTATATT 58.793 33.333 1.02 0.00 0.00 1.28
4158 5683 8.140112 AGACTTTGAGTCCAATAATCACTAGT 57.860 34.615 4.56 0.00 46.18 2.57
4163 5689 5.626809 CGGGAGACTTTGAGTCCAATAATCA 60.627 44.000 4.56 0.00 46.18 2.57
4575 6299 2.241176 AGTCAAACCCTTCAACCTGTCA 59.759 45.455 0.00 0.00 0.00 3.58
4602 6326 1.295792 TCAACGGAAGCAACAGTGTC 58.704 50.000 0.00 0.00 0.00 3.67
4747 6476 8.427902 AGATAACCTGATGTCAATAGCTATCA 57.572 34.615 6.72 1.11 0.00 2.15
4748 6477 9.364989 GAAGATAACCTGATGTCAATAGCTATC 57.635 37.037 6.72 0.00 0.00 2.08
4755 6484 5.104193 AGCCTGAAGATAACCTGATGTCAAT 60.104 40.000 0.00 0.00 0.00 2.57
4786 6515 8.830915 TGCCTTACATCTATTTATCCCAAAAA 57.169 30.769 0.00 0.00 0.00 1.94
4787 6516 8.830915 TTGCCTTACATCTATTTATCCCAAAA 57.169 30.769 0.00 0.00 0.00 2.44
4788 6517 8.830915 TTTGCCTTACATCTATTTATCCCAAA 57.169 30.769 0.00 0.00 0.00 3.28
4798 6527 8.960591 GGCAATGTATATTTGCCTTACATCTAT 58.039 33.333 24.51 0.00 35.95 1.98
4799 6528 7.941790 TGGCAATGTATATTTGCCTTACATCTA 59.058 33.333 28.43 13.36 39.32 1.98
4800 6529 6.777091 TGGCAATGTATATTTGCCTTACATCT 59.223 34.615 28.43 0.00 39.32 2.90
4801 6530 6.980593 TGGCAATGTATATTTGCCTTACATC 58.019 36.000 28.43 11.97 39.32 3.06
4802 6531 6.975196 TGGCAATGTATATTTGCCTTACAT 57.025 33.333 28.43 5.43 39.32 2.29
4803 6532 6.379703 ACTTGGCAATGTATATTTGCCTTACA 59.620 34.615 28.43 15.10 39.32 2.41
4804 6533 6.805713 ACTTGGCAATGTATATTTGCCTTAC 58.194 36.000 28.43 13.18 39.32 2.34
4805 6534 7.123397 TCAACTTGGCAATGTATATTTGCCTTA 59.877 33.333 28.43 20.23 39.32 2.69
4806 6535 5.937975 ACTTGGCAATGTATATTTGCCTT 57.062 34.783 28.43 17.40 39.32 4.35
4807 6536 5.421693 TCAACTTGGCAATGTATATTTGCCT 59.578 36.000 28.43 15.35 39.32 4.75
4808 6537 5.659463 TCAACTTGGCAATGTATATTTGCC 58.341 37.500 24.81 24.81 39.17 4.52
4809 6538 5.232838 GCTCAACTTGGCAATGTATATTTGC 59.767 40.000 0.00 12.53 0.00 3.68
4810 6539 6.567050 AGCTCAACTTGGCAATGTATATTTG 58.433 36.000 0.00 0.00 0.00 2.32
4811 6540 6.780457 AGCTCAACTTGGCAATGTATATTT 57.220 33.333 0.00 0.00 0.00 1.40
4812 6541 6.780457 AAGCTCAACTTGGCAATGTATATT 57.220 33.333 0.00 0.00 37.17 1.28
4825 6554 7.108847 AGTGCTAATTCTATCAAGCTCAACTT 58.891 34.615 0.00 0.00 40.05 2.66
4826 6555 6.648192 AGTGCTAATTCTATCAAGCTCAACT 58.352 36.000 0.00 0.00 35.95 3.16
4827 6556 6.760770 AGAGTGCTAATTCTATCAAGCTCAAC 59.239 38.462 0.00 0.00 35.95 3.18
4828 6557 6.882656 AGAGTGCTAATTCTATCAAGCTCAA 58.117 36.000 0.00 0.00 35.95 3.02
4829 6558 6.477053 AGAGTGCTAATTCTATCAAGCTCA 57.523 37.500 0.00 0.00 35.95 4.26
4830 6559 8.879342 TTTAGAGTGCTAATTCTATCAAGCTC 57.121 34.615 0.00 0.00 36.54 4.09
4831 6560 9.323985 CTTTTAGAGTGCTAATTCTATCAAGCT 57.676 33.333 0.00 0.00 36.54 3.74
4832 6561 9.103861 ACTTTTAGAGTGCTAATTCTATCAAGC 57.896 33.333 0.00 0.00 37.17 4.01
4838 6567 9.649167 GGTGTAACTTTTAGAGTGCTAATTCTA 57.351 33.333 0.00 0.00 39.00 2.10
4839 6568 8.154856 TGGTGTAACTTTTAGAGTGCTAATTCT 58.845 33.333 0.00 0.00 39.00 2.40
4840 6569 8.319143 TGGTGTAACTTTTAGAGTGCTAATTC 57.681 34.615 0.00 0.00 39.00 2.17
4841 6570 8.685838 TTGGTGTAACTTTTAGAGTGCTAATT 57.314 30.769 0.00 0.00 39.00 1.40
4842 6571 8.685838 TTTGGTGTAACTTTTAGAGTGCTAAT 57.314 30.769 0.00 0.00 39.00 1.73
4843 6572 8.508883 TTTTGGTGTAACTTTTAGAGTGCTAA 57.491 30.769 0.00 0.00 39.00 3.09
4844 6573 8.685838 ATTTTGGTGTAACTTTTAGAGTGCTA 57.314 30.769 0.00 0.00 39.00 3.49
4845 6574 7.582667 ATTTTGGTGTAACTTTTAGAGTGCT 57.417 32.000 0.00 0.00 39.00 4.40
4846 6575 8.565416 ACTATTTTGGTGTAACTTTTAGAGTGC 58.435 33.333 0.00 0.00 39.00 4.40
4854 6583 9.524106 GCTTTACAACTATTTTGGTGTAACTTT 57.476 29.630 4.85 0.00 36.74 2.66
4855 6584 8.909923 AGCTTTACAACTATTTTGGTGTAACTT 58.090 29.630 4.85 0.00 36.74 2.66
4856 6585 8.349983 CAGCTTTACAACTATTTTGGTGTAACT 58.650 33.333 4.85 0.00 36.74 2.24
4857 6586 8.347035 TCAGCTTTACAACTATTTTGGTGTAAC 58.653 33.333 4.85 0.00 0.00 2.50
4858 6587 8.453238 TCAGCTTTACAACTATTTTGGTGTAA 57.547 30.769 1.58 1.58 0.00 2.41
4859 6588 8.453238 TTCAGCTTTACAACTATTTTGGTGTA 57.547 30.769 0.00 0.00 0.00 2.90
4860 6589 6.952773 TCAGCTTTACAACTATTTTGGTGT 57.047 33.333 0.00 0.00 0.00 4.16
4870 6599 9.672673 ACATGTAAGATATTCAGCTTTACAACT 57.327 29.630 8.53 0.00 31.51 3.16
4873 6602 9.448438 ACAACATGTAAGATATTCAGCTTTACA 57.552 29.630 0.00 7.22 31.51 2.41
4874 6603 9.708222 CACAACATGTAAGATATTCAGCTTTAC 57.292 33.333 0.00 0.00 31.51 2.01
4875 6604 9.665719 TCACAACATGTAAGATATTCAGCTTTA 57.334 29.630 0.00 0.00 31.51 1.85
4876 6605 8.565896 TCACAACATGTAAGATATTCAGCTTT 57.434 30.769 0.00 0.00 31.51 3.51
4877 6606 8.565896 TTCACAACATGTAAGATATTCAGCTT 57.434 30.769 0.00 0.00 34.10 3.74
4878 6607 7.826252 ACTTCACAACATGTAAGATATTCAGCT 59.174 33.333 12.05 0.00 0.00 4.24
4879 6608 7.978982 ACTTCACAACATGTAAGATATTCAGC 58.021 34.615 12.05 0.00 0.00 4.26
4880 6609 8.323854 CGACTTCACAACATGTAAGATATTCAG 58.676 37.037 12.05 2.44 0.00 3.02
4881 6610 7.201522 GCGACTTCACAACATGTAAGATATTCA 60.202 37.037 12.05 0.00 0.00 2.57
4917 6646 5.965033 ATAATCACCAGTGAAGAGGTCAT 57.035 39.130 4.31 0.00 43.58 3.06
4932 6661 6.901887 CACAAGCTCGTGAATACAATAATCAC 59.098 38.462 0.00 0.00 39.34 3.06
4993 6722 4.269183 TCCGTCTGGCAATTTCATATGTT 58.731 39.130 1.90 0.00 34.14 2.71
5066 6795 7.982354 GTGGACTAGAGACAAGCAAATATAACT 59.018 37.037 0.00 0.00 0.00 2.24
5090 6819 7.588854 GTGTCATTTGATCGATTCATTATGGTG 59.411 37.037 0.00 0.00 33.34 4.17
5222 6951 2.240162 CTAGTTCGTCCAGTGGGGGC 62.240 65.000 9.92 0.00 38.17 5.80
5388 7118 6.439058 AGGAGACAGAAAGGTGCCTATATATC 59.561 42.308 0.00 0.00 0.00 1.63
5405 7145 4.381398 CCGGATGCATTCTATAGGAGACAG 60.381 50.000 0.00 0.00 32.31 3.51
5510 7265 0.796870 TCTACAGCGAATGTGCGACG 60.797 55.000 4.15 0.00 43.80 5.12
5532 7287 2.497675 AGCTACATCGTCCAGACACAAT 59.502 45.455 0.00 0.00 0.00 2.71
5533 7288 1.893137 AGCTACATCGTCCAGACACAA 59.107 47.619 0.00 0.00 0.00 3.33
5543 7298 6.238211 GCATTTCAACATAAGAGCTACATCGT 60.238 38.462 0.00 0.00 0.00 3.73
5549 7304 6.430925 AGTTGTGCATTTCAACATAAGAGCTA 59.569 34.615 17.80 0.00 44.97 3.32
5559 7314 5.576384 TGAGTTTTCAGTTGTGCATTTCAAC 59.424 36.000 9.95 9.95 43.51 3.18
5561 7316 5.321959 TGAGTTTTCAGTTGTGCATTTCA 57.678 34.783 0.00 0.00 0.00 2.69
5562 7317 6.345250 CGAATGAGTTTTCAGTTGTGCATTTC 60.345 38.462 0.00 0.00 36.61 2.17
5583 7339 4.161189 ACAATCATCAGAGACAGACCGAAT 59.839 41.667 0.00 0.00 0.00 3.34
5588 7344 5.698089 TGACAAACAATCATCAGAGACAGAC 59.302 40.000 0.00 0.00 0.00 3.51
5614 7432 9.917872 GCTGATATGTACGTATATACAGTAGTG 57.082 37.037 24.77 0.00 38.43 2.74
5647 7473 7.007995 CGTTGTTTTCAGTGTCTAAAAACCTTC 59.992 37.037 12.70 5.43 40.48 3.46
5713 7707 9.301153 TGATTCTTTTAGAAACAAAAGCTGAAC 57.699 29.630 0.00 0.00 42.63 3.18
5724 7718 9.750125 ACCTGAAATGTTGATTCTTTTAGAAAC 57.250 29.630 0.00 0.00 37.82 2.78
5774 7769 9.500785 TTGTTTTTCCTTTTGTTTCTGAGAAAT 57.499 25.926 11.20 0.00 0.00 2.17
5775 7770 8.894768 TTGTTTTTCCTTTTGTTTCTGAGAAA 57.105 26.923 3.02 3.02 0.00 2.52
5791 7786 3.988819 TGTAATGCTGGCTTGTTTTTCC 58.011 40.909 0.00 0.00 0.00 3.13
6160 8159 2.693762 CGGTGCCATCAACCTGCTG 61.694 63.158 0.00 0.00 0.00 4.41
6175 8174 3.934391 CTTCCGCGCCTTCTTCGGT 62.934 63.158 0.00 0.00 43.35 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.