Multiple sequence alignment - TraesCS2B01G423700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G423700 chr2B 100.000 3898 0 0 1 3898 609947364 609951261 0 7199
1 TraesCS2B01G423700 chr2A 93.703 3160 135 30 1 3118 661711610 661714747 0 4674
2 TraesCS2B01G423700 chr2A 92.867 729 24 9 3190 3898 661715031 661715751 0 1033
3 TraesCS2B01G423700 chr2D 93.946 2940 102 41 294 3176 518026235 518029155 0 4373
4 TraesCS2B01G423700 chr2D 92.098 734 25 7 3193 3898 518029222 518029950 0 1003


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G423700 chr2B 609947364 609951261 3897 False 7199.0 7199 100.000 1 3898 1 chr2B.!!$F1 3897
1 TraesCS2B01G423700 chr2A 661711610 661715751 4141 False 2853.5 4674 93.285 1 3898 2 chr2A.!!$F1 3897
2 TraesCS2B01G423700 chr2D 518026235 518029950 3715 False 2688.0 4373 93.022 294 3898 2 chr2D.!!$F1 3604

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
746 753 0.035056 GCCTCACCAGCCACACTATT 60.035 55.0 0.00 0.0 0.0 1.73 F
1332 1354 0.481567 CCTCCCTCGGATGGTACCTA 59.518 60.0 14.36 0.0 0.0 3.08 F
1668 1716 0.812811 GCGCTCTTCCATGCTCATCA 60.813 55.0 0.00 0.0 0.0 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2255 2319 0.106769 TGCCCTGCAAAGAGAACACA 60.107 50.0 0.00 0.0 34.76 3.72 R
2624 2690 0.745486 CGATCAGCAGGTTGATGGCA 60.745 55.0 3.25 0.0 37.90 4.92 R
3267 3577 1.067693 CGCACATTCGCTGTAGAACA 58.932 50.0 0.00 0.0 35.91 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.929836 GATCTTCATGTGACTCCGCAC 59.070 52.381 0.00 0.00 39.22 5.34
34 35 0.950555 TTCATGTGACTCCGCACTGC 60.951 55.000 0.00 0.00 39.49 4.40
39 40 2.125753 GACTCCGCACTGCCTCTG 60.126 66.667 0.00 0.00 0.00 3.35
52 53 1.133823 TGCCTCTGTTGTGTGGATTGT 60.134 47.619 0.00 0.00 0.00 2.71
66 67 2.427095 TGGATTGTGTCGACGATCATCT 59.573 45.455 20.70 8.62 42.81 2.90
77 78 3.608474 CGACGATCATCTATGGCAACGTA 60.608 47.826 0.00 0.00 42.51 3.57
133 134 4.031611 GGTACCTACTTGGGAGAAGTGAT 58.968 47.826 4.06 0.00 41.11 3.06
136 137 3.515901 ACCTACTTGGGAGAAGTGATGAC 59.484 47.826 0.00 0.00 41.11 3.06
193 194 2.632987 AAAGAGGTGTGTGTGGGTAC 57.367 50.000 0.00 0.00 0.00 3.34
216 217 2.517450 CGTGTGCCGCTTAGCTAGC 61.517 63.158 6.62 6.62 46.83 3.42
225 226 1.941325 GCTTAGCTAGCGGATTGTGT 58.059 50.000 9.55 0.00 40.71 3.72
226 227 2.280628 GCTTAGCTAGCGGATTGTGTT 58.719 47.619 9.55 0.00 40.71 3.32
227 228 2.030946 GCTTAGCTAGCGGATTGTGTTG 59.969 50.000 9.55 0.00 40.71 3.33
228 229 2.309528 TAGCTAGCGGATTGTGTTGG 57.690 50.000 9.55 0.00 0.00 3.77
229 230 0.324943 AGCTAGCGGATTGTGTTGGT 59.675 50.000 9.55 0.00 0.00 3.67
233 234 3.189702 GCTAGCGGATTGTGTTGGTTTTA 59.810 43.478 0.00 0.00 0.00 1.52
235 236 2.030274 AGCGGATTGTGTTGGTTTTAGC 60.030 45.455 0.00 0.00 0.00 3.09
236 237 2.924880 GCGGATTGTGTTGGTTTTAGCC 60.925 50.000 0.00 0.00 0.00 3.93
240 241 2.279935 TGTGTTGGTTTTAGCCCGAT 57.720 45.000 0.00 0.00 0.00 4.18
246 247 3.945981 TGGTTTTAGCCCGATTTTTCC 57.054 42.857 0.00 0.00 0.00 3.13
247 248 2.229302 TGGTTTTAGCCCGATTTTTCCG 59.771 45.455 0.00 0.00 0.00 4.30
249 250 3.305539 GGTTTTAGCCCGATTTTTCCGTT 60.306 43.478 0.00 0.00 0.00 4.44
262 263 7.254556 CCGATTTTTCCGTTATTAACTAGACCC 60.255 40.741 0.00 0.00 0.00 4.46
263 264 7.278424 CGATTTTTCCGTTATTAACTAGACCCA 59.722 37.037 0.00 0.00 0.00 4.51
302 306 2.703007 GGGATATCTTGTGTGAGGCTCT 59.297 50.000 16.72 0.00 0.00 4.09
335 339 8.803799 CGTAGTTTTCATACAAATATTTTGCCC 58.196 33.333 0.00 0.00 0.00 5.36
460 467 4.318021 CAGCGTGCTTGCGTTGCT 62.318 61.111 0.00 1.28 40.67 3.91
518 525 5.633601 CGTCTGCATAAACGTCCATATATGT 59.366 40.000 11.73 0.00 34.30 2.29
565 572 5.295950 TGCACAAACAAATTAATGGTCAGG 58.704 37.500 0.00 0.00 0.00 3.86
746 753 0.035056 GCCTCACCAGCCACACTATT 60.035 55.000 0.00 0.00 0.00 1.73
799 809 2.573083 CCACACCCAAAAGCCGCAT 61.573 57.895 0.00 0.00 0.00 4.73
866 880 4.101119 CACTCCACCTATAAAATCTCCCGT 59.899 45.833 0.00 0.00 0.00 5.28
1182 1204 2.660064 GGAGGTCGGCCACATCACT 61.660 63.158 9.71 1.55 37.56 3.41
1332 1354 0.481567 CCTCCCTCGGATGGTACCTA 59.518 60.000 14.36 0.00 0.00 3.08
1344 1366 5.633117 GGATGGTACCTACTAAGCTACTCT 58.367 45.833 14.36 0.00 0.00 3.24
1399 1440 7.325599 ACACGACTACACGTTACTTAATTTC 57.674 36.000 0.00 0.00 44.76 2.17
1559 1600 4.619227 CACCTCGCCACCACCGTT 62.619 66.667 0.00 0.00 0.00 4.44
1601 1645 0.867753 CGCGCGCTTATCTCAGACTT 60.868 55.000 30.48 0.00 0.00 3.01
1603 1647 2.460918 GCGCGCTTATCTCAGACTTAA 58.539 47.619 26.67 0.00 0.00 1.85
1605 1649 3.491267 GCGCGCTTATCTCAGACTTAATT 59.509 43.478 26.67 0.00 0.00 1.40
1610 1654 8.579600 CGCGCTTATCTCAGACTTAATTATTAG 58.420 37.037 5.56 0.00 0.00 1.73
1650 1694 3.170585 CGACGTCGTCCCTTTCGC 61.171 66.667 29.08 0.00 34.11 4.70
1651 1695 3.170585 GACGTCGTCCCTTTCGCG 61.171 66.667 14.60 0.00 35.42 5.87
1660 1708 1.450312 CCCTTTCGCGCTCTTCCAT 60.450 57.895 5.56 0.00 0.00 3.41
1667 1715 1.829349 CGCGCTCTTCCATGCTCATC 61.829 60.000 5.56 0.00 0.00 2.92
1668 1716 0.812811 GCGCTCTTCCATGCTCATCA 60.813 55.000 0.00 0.00 0.00 3.07
2133 2182 3.232213 TGTGCTCGAGATTCAGGTAAC 57.768 47.619 18.75 0.00 0.00 2.50
2134 2183 2.560981 TGTGCTCGAGATTCAGGTAACA 59.439 45.455 18.75 0.00 41.41 2.41
2180 2241 3.055094 CCTCCCAAGTAGTGCATGTTAGT 60.055 47.826 0.00 0.00 0.00 2.24
2228 2292 1.156736 CCGCTTTGAGAACGAATGGT 58.843 50.000 0.00 0.00 0.00 3.55
2255 2319 2.625790 AGAAAAGTCGCTGAGAGTGAGT 59.374 45.455 0.00 0.00 39.89 3.41
2445 2511 1.674611 CGCGCTCTACAAGTTCCACG 61.675 60.000 5.56 0.00 0.00 4.94
2624 2690 3.934391 CTTCCGCGCCTTCTTCGGT 62.934 63.158 0.00 0.00 43.35 4.69
2639 2705 2.693762 CGGTGCCATCAACCTGCTG 61.694 63.158 0.00 0.00 0.00 4.41
3008 3078 3.988819 TGTAATGCTGGCTTGTTTTTCC 58.011 40.909 0.00 0.00 0.00 3.13
3024 3094 8.894768 TTGTTTTTCCTTTTGTTTCTGAGAAA 57.105 26.923 3.02 3.02 0.00 2.52
3025 3095 9.500785 TTGTTTTTCCTTTTGTTTCTGAGAAAT 57.499 25.926 11.20 0.00 0.00 2.17
3086 3157 9.301153 TGATTCTTTTAGAAACAAAAGCTGAAC 57.699 29.630 0.00 0.00 42.63 3.18
3122 3361 8.160521 ACATACTACTACAGATCAGCTTGTAG 57.839 38.462 17.82 17.82 39.84 2.74
3152 3391 7.007995 CGTTGTTTTCAGTGTCTAAAAACCTTC 59.992 37.037 12.70 5.43 40.48 3.46
3185 3432 9.917872 GCTGATATGTACGTATATACAGTAGTG 57.082 37.037 24.77 0.00 38.43 2.74
3211 3520 5.698089 TGACAAACAATCATCAGAGACAGAC 59.302 40.000 0.00 0.00 0.00 3.51
3216 3525 4.161189 ACAATCATCAGAGACAGACCGAAT 59.839 41.667 0.00 0.00 0.00 3.34
3237 3546 6.345250 CGAATGAGTTTTCAGTTGTGCATTTC 60.345 38.462 0.00 0.00 36.61 2.17
3239 3548 5.718146 TGAGTTTTCAGTTGTGCATTTCAA 58.282 33.333 0.00 0.00 0.00 2.69
3240 3549 5.576384 TGAGTTTTCAGTTGTGCATTTCAAC 59.424 36.000 9.95 9.95 43.51 3.18
3250 3560 6.430925 AGTTGTGCATTTCAACATAAGAGCTA 59.569 34.615 17.80 0.00 44.97 3.32
3256 3566 6.238211 GCATTTCAACATAAGAGCTACATCGT 60.238 38.462 0.00 0.00 0.00 3.73
3266 3576 1.893137 AGCTACATCGTCCAGACACAA 59.107 47.619 0.00 0.00 0.00 3.33
3267 3577 2.497675 AGCTACATCGTCCAGACACAAT 59.502 45.455 0.00 0.00 0.00 2.71
3289 3599 0.796870 TCTACAGCGAATGTGCGACG 60.797 55.000 4.15 0.00 43.80 5.12
3394 3719 4.381398 CCGGATGCATTCTATAGGAGACAG 60.381 50.000 0.00 0.00 32.31 3.51
3411 3744 6.439058 AGGAGACAGAAAGGTGCCTATATATC 59.561 42.308 0.00 0.00 0.00 1.63
3577 3913 2.240162 CTAGTTCGTCCAGTGGGGGC 62.240 65.000 9.92 0.00 38.17 5.80
3709 4045 7.588854 GTGTCATTTGATCGATTCATTATGGTG 59.411 37.037 0.00 0.00 33.34 4.17
3733 4069 7.982354 GTGGACTAGAGACAAGCAAATATAACT 59.018 37.037 0.00 0.00 0.00 2.24
3806 4142 4.269183 TCCGTCTGGCAATTTCATATGTT 58.731 39.130 1.90 0.00 34.14 2.71
3867 4203 6.901887 CACAAGCTCGTGAATACAATAATCAC 59.098 38.462 0.00 0.00 39.34 3.06
3882 4218 5.965033 ATAATCACCAGTGAAGAGGTCAT 57.035 39.130 4.31 0.00 43.58 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.004839 CGGAGTCACATGAAGATCCGTAT 59.995 47.826 19.08 0.00 39.78 3.06
9 10 1.845266 CGGAGTCACATGAAGATCCG 58.155 55.000 15.72 15.72 39.14 4.18
17 18 2.393768 GGCAGTGCGGAGTCACATG 61.394 63.158 9.45 0.00 37.10 3.21
31 32 1.538512 CAATCCACACAACAGAGGCAG 59.461 52.381 0.00 0.00 0.00 4.85
34 35 2.549754 GACACAATCCACACAACAGAGG 59.450 50.000 0.00 0.00 0.00 3.69
39 40 1.070843 CGTCGACACAATCCACACAAC 60.071 52.381 17.16 0.00 0.00 3.32
52 53 1.953686 TGCCATAGATGATCGTCGACA 59.046 47.619 17.16 3.13 0.00 4.35
77 78 1.375268 GCTCAAGCAAGCGTCTCCT 60.375 57.895 0.00 0.00 41.59 3.69
106 107 2.504175 TCTCCCAAGTAGGTACCATTGC 59.496 50.000 15.94 0.00 34.66 3.56
133 134 0.531753 CCACACATGTGTCACCGTCA 60.532 55.000 28.38 0.00 42.83 4.35
136 137 1.999735 GATACCACACATGTGTCACCG 59.000 52.381 28.38 16.77 42.83 4.94
186 187 0.671472 GGCACACGTAAGGTACCCAC 60.671 60.000 8.74 6.22 46.39 4.61
193 194 1.693083 GCTAAGCGGCACACGTAAGG 61.693 60.000 1.45 0.00 46.52 2.69
196 197 0.099968 CTAGCTAAGCGGCACACGTA 59.900 55.000 1.45 0.00 46.52 3.57
216 217 2.352323 GGGCTAAAACCAACACAATCCG 60.352 50.000 0.00 0.00 0.00 4.18
224 225 3.991773 GGAAAAATCGGGCTAAAACCAAC 59.008 43.478 0.00 0.00 0.00 3.77
225 226 3.305471 CGGAAAAATCGGGCTAAAACCAA 60.305 43.478 0.00 0.00 0.00 3.67
226 227 2.229302 CGGAAAAATCGGGCTAAAACCA 59.771 45.455 0.00 0.00 0.00 3.67
227 228 2.229543 ACGGAAAAATCGGGCTAAAACC 59.770 45.455 0.00 0.00 0.00 3.27
228 229 3.564235 ACGGAAAAATCGGGCTAAAAC 57.436 42.857 0.00 0.00 0.00 2.43
229 230 5.900865 ATAACGGAAAAATCGGGCTAAAA 57.099 34.783 0.00 0.00 0.00 1.52
233 234 4.945543 AGTTAATAACGGAAAAATCGGGCT 59.054 37.500 0.00 0.00 36.23 5.19
235 236 7.254556 GGTCTAGTTAATAACGGAAAAATCGGG 60.255 40.741 0.00 0.00 36.23 5.14
236 237 7.254556 GGGTCTAGTTAATAACGGAAAAATCGG 60.255 40.741 0.00 0.00 36.23 4.18
240 241 8.866970 AATGGGTCTAGTTAATAACGGAAAAA 57.133 30.769 0.00 0.00 36.23 1.94
272 274 4.393062 CACACAAGATATCCCACAACTCAC 59.607 45.833 0.00 0.00 0.00 3.51
302 306 7.972832 ATTTGTATGAAAACTACGTGGAAGA 57.027 32.000 5.70 0.00 0.00 2.87
460 467 0.250381 TCGGCCTTGCGTTTTTAGGA 60.250 50.000 0.00 0.00 0.00 2.94
488 495 0.296642 CGTTTATGCAGACGTACCGC 59.703 55.000 10.74 0.00 34.75 5.68
518 525 7.389232 CAAGGTTAGATATGCATGGTCAGATA 58.611 38.462 10.16 0.00 0.00 1.98
636 643 7.342581 TGGTCATAATTAATGTTGGCACTAGA 58.657 34.615 0.00 0.00 36.89 2.43
769 779 3.961729 GTGTGGACACGGTAAGCC 58.038 61.111 0.00 0.00 37.10 4.35
799 809 1.371267 CGTCGAGTTCGTTGAGCCA 60.371 57.895 1.07 0.00 40.80 4.75
843 857 4.101119 ACGGGAGATTTTATAGGTGGAGTG 59.899 45.833 0.00 0.00 0.00 3.51
849 863 3.487120 GGCACGGGAGATTTTATAGGT 57.513 47.619 0.00 0.00 0.00 3.08
883 897 1.813513 CTCGGTTGGTTGCTGATTCT 58.186 50.000 0.00 0.00 0.00 2.40
967 989 1.722636 CTCCCTCCGGTGTACGTAGC 61.723 65.000 0.00 0.00 42.24 3.58
969 991 1.077501 CCTCCCTCCGGTGTACGTA 60.078 63.158 0.00 0.00 42.24 3.57
970 992 2.362120 CCTCCCTCCGGTGTACGT 60.362 66.667 0.00 0.00 42.24 3.57
971 993 3.145551 CCCTCCCTCCGGTGTACG 61.146 72.222 0.00 0.00 43.80 3.67
972 994 1.757340 CTCCCTCCCTCCGGTGTAC 60.757 68.421 0.00 0.00 0.00 2.90
1125 1147 2.328099 CGCCACTGCCTTCTTCACC 61.328 63.158 0.00 0.00 0.00 4.02
1173 1195 1.148157 CGGCGAGCTTAGTGATGTGG 61.148 60.000 0.00 0.00 0.00 4.17
1212 1234 4.838152 CTGGACGCGGTGATGGGG 62.838 72.222 12.47 0.00 0.00 4.96
1332 1354 9.339850 TCGATTGAATAAGTAGAGTAGCTTAGT 57.660 33.333 0.00 0.00 31.70 2.24
1344 1366 8.239038 AGGTTCATCTCTCGATTGAATAAGTA 57.761 34.615 0.00 0.00 0.00 2.24
1368 1394 7.456684 AGTAACGTGTAGTCGTGTACTATAG 57.543 40.000 0.00 0.00 42.63 1.31
1399 1440 4.856801 CCAATCCACGGGCCGGAG 62.857 72.222 31.78 21.65 35.56 4.63
1643 1687 1.717937 CATGGAAGAGCGCGAAAGG 59.282 57.895 12.10 0.00 0.00 3.11
1650 1694 0.935898 GTGATGAGCATGGAAGAGCG 59.064 55.000 0.00 0.00 35.48 5.03
1651 1695 2.034104 TGTGATGAGCATGGAAGAGC 57.966 50.000 0.00 0.00 0.00 4.09
1660 1708 0.395173 AGGCATGCATGTGATGAGCA 60.395 50.000 26.79 0.00 43.14 4.26
2056 2105 2.537560 GCCATTGAGGACGGCGATG 61.538 63.158 16.62 5.34 41.22 3.84
2133 2182 1.071699 TCTCTTTTCCCGGGTTGACTG 59.928 52.381 22.86 8.60 0.00 3.51
2134 2183 1.430992 TCTCTTTTCCCGGGTTGACT 58.569 50.000 22.86 0.00 0.00 3.41
2228 2292 4.240888 CTCTCAGCGACTTTTCTTCATCA 58.759 43.478 0.00 0.00 0.00 3.07
2255 2319 0.106769 TGCCCTGCAAAGAGAACACA 60.107 50.000 0.00 0.00 34.76 3.72
2618 2684 1.926511 GCAGGTTGATGGCACCGAAG 61.927 60.000 0.00 0.00 0.00 3.79
2624 2690 0.745486 CGATCAGCAGGTTGATGGCA 60.745 55.000 3.25 0.00 37.90 4.92
2775 2841 4.431131 CCCCAGCGCCCAGTTGAT 62.431 66.667 2.29 0.00 32.33 2.57
3025 3095 9.347240 GGTTCCAGTACAAGACATACTAGTATA 57.653 37.037 15.03 0.00 31.53 1.47
3027 3097 7.338703 CAGGTTCCAGTACAAGACATACTAGTA 59.661 40.741 4.77 4.77 31.53 1.82
3028 3098 6.153000 CAGGTTCCAGTACAAGACATACTAGT 59.847 42.308 0.00 0.00 31.53 2.57
3029 3099 6.377429 TCAGGTTCCAGTACAAGACATACTAG 59.623 42.308 0.00 0.00 31.53 2.57
3032 3102 5.401531 TCAGGTTCCAGTACAAGACATAC 57.598 43.478 0.00 0.00 0.00 2.39
3074 3144 3.942748 TGAAACGTAGGTTCAGCTTTTGT 59.057 39.130 0.52 0.00 34.62 2.83
3086 3157 7.755591 TCTGTAGTAGTATGTTGAAACGTAGG 58.244 38.462 0.00 0.00 31.48 3.18
3122 3361 3.675467 AGACACTGAAAACAACGAAGC 57.325 42.857 0.00 0.00 0.00 3.86
3152 3391 9.871299 GTATATACGTACATATCAGCTGATCTG 57.129 37.037 31.92 30.97 44.21 2.90
3205 3514 4.058817 ACTGAAAACTCATTCGGTCTGTC 58.941 43.478 0.00 0.00 43.71 3.51
3211 3520 3.243035 TGCACAACTGAAAACTCATTCGG 60.243 43.478 0.00 0.00 40.74 4.30
3216 3525 5.321959 TGAAATGCACAACTGAAAACTCA 57.678 34.783 0.00 0.00 0.00 3.41
3237 3546 4.682787 TGGACGATGTAGCTCTTATGTTG 58.317 43.478 0.00 0.00 0.00 3.33
3239 3548 4.036971 GTCTGGACGATGTAGCTCTTATGT 59.963 45.833 0.00 0.00 0.00 2.29
3240 3549 4.036852 TGTCTGGACGATGTAGCTCTTATG 59.963 45.833 0.00 0.00 0.00 1.90
3250 3560 2.839486 ACATTGTGTCTGGACGATGT 57.161 45.000 0.00 0.00 43.40 3.06
3256 3566 3.664107 GCTGTAGAACATTGTGTCTGGA 58.336 45.455 10.07 0.00 0.00 3.86
3266 3576 1.660607 CGCACATTCGCTGTAGAACAT 59.339 47.619 0.00 0.00 35.91 2.71
3267 3577 1.067693 CGCACATTCGCTGTAGAACA 58.932 50.000 0.00 0.00 35.91 3.18
3394 3719 7.241042 TGTACAGGATATATAGGCACCTTTC 57.759 40.000 0.00 0.00 0.00 2.62
3411 3744 3.127548 GTGGCTCATTGATGTTGTACAGG 59.872 47.826 0.00 0.00 0.00 4.00
3484 3820 4.082949 TGCTAGTACGCGCTATATGTGAAT 60.083 41.667 5.73 0.00 0.00 2.57
3577 3913 3.118112 AGGGATATGTTCTGGAAGCAGTG 60.118 47.826 0.00 0.00 0.00 3.66
3709 4045 9.685828 CTAGTTATATTTGCTTGTCTCTAGTCC 57.314 37.037 0.00 0.00 0.00 3.85
3733 4069 5.804639 TGGCTGAAGACTAGCATTTTTCTA 58.195 37.500 0.00 0.00 42.88 2.10
3806 4142 2.875933 CCTTGCTCTTACGAACCAAACA 59.124 45.455 0.00 0.00 0.00 2.83
3867 4203 6.824305 AATTAACAATGACCTCTTCACTGG 57.176 37.500 0.00 0.00 35.66 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.