Multiple sequence alignment - TraesCS2B01G423600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G423600 chr2B 100.000 3038 0 0 1 3038 609203300 609200263 0.000000e+00 5611.0
1 TraesCS2B01G423600 chr2D 92.123 2628 123 35 379 2937 517265346 517262734 0.000000e+00 3629.0
2 TraesCS2B01G423600 chr2A 90.145 2689 167 42 399 3034 661586437 661583794 0.000000e+00 3408.0
3 TraesCS2B01G423600 chr2A 91.463 82 7 0 136 217 77267544 77267463 2.480000e-21 113.0
4 TraesCS2B01G423600 chr6A 76.608 1026 174 47 1058 2038 469110030 469111034 3.500000e-139 505.0
5 TraesCS2B01G423600 chr6D 75.949 1027 179 48 1058 2038 329884864 329885868 1.650000e-127 466.0
6 TraesCS2B01G423600 chr6B 75.296 1012 190 46 1069 2038 490565815 490564822 2.160000e-116 429.0
7 TraesCS2B01G423600 chr3D 92.166 217 17 0 1 217 455852269 455852053 1.060000e-79 307.0
8 TraesCS2B01G423600 chr7A 89.401 217 23 0 1 217 47975556 47975340 1.070000e-69 274.0
9 TraesCS2B01G423600 chr7A 75.521 192 35 9 1304 1489 722128364 722128549 1.940000e-12 84.2
10 TraesCS2B01G423600 chr7A 87.500 56 7 0 1300 1355 722019759 722019814 7.030000e-07 65.8
11 TraesCS2B01G423600 chr4D 77.152 302 35 22 1210 1485 485163793 485164086 8.780000e-31 145.0
12 TraesCS2B01G423600 chr4B 75.000 296 48 17 1212 1485 618347484 618347775 2.480000e-21 113.0
13 TraesCS2B01G423600 chr5A 74.916 299 45 21 1211 1485 666204341 666204633 3.200000e-20 110.0
14 TraesCS2B01G423600 chr7B 75.127 197 39 7 1304 1495 726754900 726755091 1.940000e-12 84.2
15 TraesCS2B01G423600 chr7B 75.758 165 24 12 1308 1464 726267674 726267518 5.430000e-08 69.4
16 TraesCS2B01G423600 chr7B 90.385 52 5 0 1304 1355 726697395 726697446 5.430000e-08 69.4
17 TraesCS2B01G423600 chr7D 91.837 49 4 0 1307 1355 626597673 626597625 5.430000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G423600 chr2B 609200263 609203300 3037 True 5611 5611 100.000 1 3038 1 chr2B.!!$R1 3037
1 TraesCS2B01G423600 chr2D 517262734 517265346 2612 True 3629 3629 92.123 379 2937 1 chr2D.!!$R1 2558
2 TraesCS2B01G423600 chr2A 661583794 661586437 2643 True 3408 3408 90.145 399 3034 1 chr2A.!!$R2 2635
3 TraesCS2B01G423600 chr6A 469110030 469111034 1004 False 505 505 76.608 1058 2038 1 chr6A.!!$F1 980
4 TraesCS2B01G423600 chr6D 329884864 329885868 1004 False 466 466 75.949 1058 2038 1 chr6D.!!$F1 980
5 TraesCS2B01G423600 chr6B 490564822 490565815 993 True 429 429 75.296 1069 2038 1 chr6B.!!$R1 969

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
296 297 0.172352 CGCACACACACAAAAAGGGT 59.828 50.0 0.0 0.0 0.0 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2108 2196 0.180406 GGGGACAACATGCTACCGAT 59.82 55.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.002797 GGATGAAGCGGCAACCTT 57.997 55.556 1.45 0.00 0.00 3.50
18 19 3.168773 GGATGAAGCGGCAACCTTA 57.831 52.632 1.45 0.00 0.00 2.69
19 20 1.680338 GGATGAAGCGGCAACCTTAT 58.320 50.000 1.45 0.00 0.00 1.73
20 21 2.024414 GGATGAAGCGGCAACCTTATT 58.976 47.619 1.45 0.00 0.00 1.40
21 22 2.033424 GGATGAAGCGGCAACCTTATTC 59.967 50.000 1.45 0.00 0.00 1.75
22 23 1.083489 TGAAGCGGCAACCTTATTCG 58.917 50.000 1.45 0.00 0.00 3.34
23 24 0.248094 GAAGCGGCAACCTTATTCGC 60.248 55.000 1.45 0.00 45.72 4.70
24 25 3.497879 GCGGCAACCTTATTCGCT 58.502 55.556 0.00 0.00 42.62 4.93
25 26 1.062525 GCGGCAACCTTATTCGCTG 59.937 57.895 0.00 0.00 42.62 5.18
26 27 1.366111 GCGGCAACCTTATTCGCTGA 61.366 55.000 0.00 0.00 42.62 4.26
27 28 0.652592 CGGCAACCTTATTCGCTGAG 59.347 55.000 0.00 0.00 32.30 3.35
28 29 1.739067 GGCAACCTTATTCGCTGAGT 58.261 50.000 0.00 0.00 0.00 3.41
29 30 1.398390 GGCAACCTTATTCGCTGAGTG 59.602 52.381 0.00 0.00 0.00 3.51
30 31 2.076863 GCAACCTTATTCGCTGAGTGT 58.923 47.619 0.00 0.00 0.00 3.55
31 32 2.159653 GCAACCTTATTCGCTGAGTGTG 60.160 50.000 0.00 0.00 0.00 3.82
32 33 3.067106 CAACCTTATTCGCTGAGTGTGT 58.933 45.455 0.00 0.00 0.00 3.72
33 34 2.688507 ACCTTATTCGCTGAGTGTGTG 58.311 47.619 0.00 0.00 0.00 3.82
34 35 2.002586 CCTTATTCGCTGAGTGTGTGG 58.997 52.381 0.00 0.00 0.00 4.17
35 36 2.353704 CCTTATTCGCTGAGTGTGTGGA 60.354 50.000 0.00 0.00 0.00 4.02
36 37 3.525537 CTTATTCGCTGAGTGTGTGGAT 58.474 45.455 0.00 0.00 0.00 3.41
37 38 2.479566 ATTCGCTGAGTGTGTGGATT 57.520 45.000 0.00 0.00 0.00 3.01
38 39 2.254546 TTCGCTGAGTGTGTGGATTT 57.745 45.000 0.00 0.00 0.00 2.17
39 40 3.394674 TTCGCTGAGTGTGTGGATTTA 57.605 42.857 0.00 0.00 0.00 1.40
40 41 2.959516 TCGCTGAGTGTGTGGATTTAG 58.040 47.619 0.00 0.00 0.00 1.85
41 42 2.002586 CGCTGAGTGTGTGGATTTAGG 58.997 52.381 0.00 0.00 0.00 2.69
42 43 2.353704 CGCTGAGTGTGTGGATTTAGGA 60.354 50.000 0.00 0.00 0.00 2.94
43 44 3.679917 CGCTGAGTGTGTGGATTTAGGAT 60.680 47.826 0.00 0.00 0.00 3.24
44 45 3.873952 GCTGAGTGTGTGGATTTAGGATC 59.126 47.826 0.00 0.00 0.00 3.36
45 46 4.383552 GCTGAGTGTGTGGATTTAGGATCT 60.384 45.833 0.00 0.00 0.00 2.75
46 47 5.163405 GCTGAGTGTGTGGATTTAGGATCTA 60.163 44.000 0.00 0.00 0.00 1.98
47 48 6.463614 GCTGAGTGTGTGGATTTAGGATCTAT 60.464 42.308 0.00 0.00 0.00 1.98
48 49 6.820335 TGAGTGTGTGGATTTAGGATCTATG 58.180 40.000 0.00 0.00 0.00 2.23
49 50 6.611236 TGAGTGTGTGGATTTAGGATCTATGA 59.389 38.462 0.00 0.00 0.00 2.15
50 51 7.290948 TGAGTGTGTGGATTTAGGATCTATGAT 59.709 37.037 0.00 0.00 0.00 2.45
51 52 8.038862 AGTGTGTGGATTTAGGATCTATGATT 57.961 34.615 0.00 0.00 0.00 2.57
52 53 7.935755 AGTGTGTGGATTTAGGATCTATGATTG 59.064 37.037 0.00 0.00 0.00 2.67
53 54 7.173907 GTGTGTGGATTTAGGATCTATGATTGG 59.826 40.741 0.00 0.00 0.00 3.16
54 55 7.072328 TGTGTGGATTTAGGATCTATGATTGGA 59.928 37.037 0.00 0.00 0.00 3.53
55 56 7.939039 GTGTGGATTTAGGATCTATGATTGGAA 59.061 37.037 0.00 0.00 0.00 3.53
56 57 8.501904 TGTGGATTTAGGATCTATGATTGGAAA 58.498 33.333 0.00 0.00 0.00 3.13
57 58 9.525826 GTGGATTTAGGATCTATGATTGGAAAT 57.474 33.333 0.00 0.00 0.00 2.17
58 59 9.524496 TGGATTTAGGATCTATGATTGGAAATG 57.476 33.333 0.00 0.00 0.00 2.32
59 60 9.525826 GGATTTAGGATCTATGATTGGAAATGT 57.474 33.333 0.00 0.00 0.00 2.71
63 64 7.997773 AGGATCTATGATTGGAAATGTCATG 57.002 36.000 0.00 0.00 34.62 3.07
64 65 7.524290 AGGATCTATGATTGGAAATGTCATGT 58.476 34.615 0.00 0.00 34.62 3.21
65 66 8.003044 AGGATCTATGATTGGAAATGTCATGTT 58.997 33.333 0.00 0.00 34.62 2.71
66 67 8.636213 GGATCTATGATTGGAAATGTCATGTTT 58.364 33.333 0.00 0.00 34.62 2.83
70 71 9.241317 CTATGATTGGAAATGTCATGTTTAAGC 57.759 33.333 0.00 0.00 34.62 3.09
71 72 6.990798 TGATTGGAAATGTCATGTTTAAGCA 58.009 32.000 0.00 0.00 0.00 3.91
72 73 7.613585 TGATTGGAAATGTCATGTTTAAGCAT 58.386 30.769 0.00 0.00 0.00 3.79
73 74 8.095792 TGATTGGAAATGTCATGTTTAAGCATT 58.904 29.630 1.53 0.00 0.00 3.56
74 75 7.655236 TTGGAAATGTCATGTTTAAGCATTG 57.345 32.000 1.53 0.00 31.19 2.82
75 76 6.757237 TGGAAATGTCATGTTTAAGCATTGT 58.243 32.000 1.53 0.00 31.19 2.71
76 77 6.867816 TGGAAATGTCATGTTTAAGCATTGTC 59.132 34.615 1.53 0.00 31.19 3.18
77 78 7.092716 GGAAATGTCATGTTTAAGCATTGTCT 58.907 34.615 1.53 0.00 31.19 3.41
78 79 7.599998 GGAAATGTCATGTTTAAGCATTGTCTT 59.400 33.333 1.53 0.00 31.19 3.01
79 80 8.524870 AAATGTCATGTTTAAGCATTGTCTTC 57.475 30.769 1.53 0.00 31.19 2.87
80 81 5.688823 TGTCATGTTTAAGCATTGTCTTCG 58.311 37.500 1.53 0.00 0.00 3.79
81 82 5.238432 TGTCATGTTTAAGCATTGTCTTCGT 59.762 36.000 1.53 0.00 0.00 3.85
82 83 6.142817 GTCATGTTTAAGCATTGTCTTCGTT 58.857 36.000 1.53 0.00 0.00 3.85
83 84 6.303259 GTCATGTTTAAGCATTGTCTTCGTTC 59.697 38.462 1.53 0.00 0.00 3.95
84 85 6.204688 TCATGTTTAAGCATTGTCTTCGTTCT 59.795 34.615 1.53 0.00 0.00 3.01
85 86 6.371809 TGTTTAAGCATTGTCTTCGTTCTT 57.628 33.333 0.00 0.00 0.00 2.52
86 87 6.198687 TGTTTAAGCATTGTCTTCGTTCTTG 58.801 36.000 0.00 0.00 0.00 3.02
87 88 6.183360 TGTTTAAGCATTGTCTTCGTTCTTGT 60.183 34.615 0.00 0.00 0.00 3.16
88 89 7.011576 TGTTTAAGCATTGTCTTCGTTCTTGTA 59.988 33.333 0.00 0.00 0.00 2.41
89 90 7.485418 TTAAGCATTGTCTTCGTTCTTGTAA 57.515 32.000 0.00 0.00 0.00 2.41
90 91 6.560253 AAGCATTGTCTTCGTTCTTGTAAT 57.440 33.333 0.00 0.00 0.00 1.89
91 92 7.667043 AAGCATTGTCTTCGTTCTTGTAATA 57.333 32.000 0.00 0.00 0.00 0.98
92 93 7.849804 AGCATTGTCTTCGTTCTTGTAATAT 57.150 32.000 0.00 0.00 0.00 1.28
93 94 8.942338 AGCATTGTCTTCGTTCTTGTAATATA 57.058 30.769 0.00 0.00 0.00 0.86
94 95 9.035607 AGCATTGTCTTCGTTCTTGTAATATAG 57.964 33.333 0.00 0.00 0.00 1.31
95 96 8.818057 GCATTGTCTTCGTTCTTGTAATATAGT 58.182 33.333 0.00 0.00 0.00 2.12
98 99 9.512435 TTGTCTTCGTTCTTGTAATATAGTAGC 57.488 33.333 0.00 0.00 0.00 3.58
99 100 7.854422 TGTCTTCGTTCTTGTAATATAGTAGCG 59.146 37.037 0.00 0.00 0.00 4.26
100 101 6.854892 TCTTCGTTCTTGTAATATAGTAGCGC 59.145 38.462 0.00 0.00 0.00 5.92
101 102 6.063640 TCGTTCTTGTAATATAGTAGCGCA 57.936 37.500 11.47 0.00 0.00 6.09
102 103 6.675026 TCGTTCTTGTAATATAGTAGCGCAT 58.325 36.000 11.47 0.00 0.00 4.73
103 104 6.581166 TCGTTCTTGTAATATAGTAGCGCATG 59.419 38.462 11.47 0.00 0.00 4.06
104 105 6.362551 CGTTCTTGTAATATAGTAGCGCATGT 59.637 38.462 11.47 0.00 0.00 3.21
105 106 7.502339 GTTCTTGTAATATAGTAGCGCATGTG 58.498 38.462 11.47 0.66 0.00 3.21
106 107 6.977213 TCTTGTAATATAGTAGCGCATGTGA 58.023 36.000 11.47 0.00 0.00 3.58
107 108 7.602753 TCTTGTAATATAGTAGCGCATGTGAT 58.397 34.615 11.47 6.29 0.00 3.06
108 109 8.736244 TCTTGTAATATAGTAGCGCATGTGATA 58.264 33.333 11.47 5.02 0.00 2.15
109 110 8.911247 TTGTAATATAGTAGCGCATGTGATAG 57.089 34.615 11.47 0.00 0.00 2.08
110 111 6.972901 TGTAATATAGTAGCGCATGTGATAGC 59.027 38.462 11.47 3.40 0.00 2.97
111 112 3.942130 ATAGTAGCGCATGTGATAGCA 57.058 42.857 11.47 0.00 0.00 3.49
112 113 2.602257 AGTAGCGCATGTGATAGCAA 57.398 45.000 11.47 0.00 0.00 3.91
113 114 2.905075 AGTAGCGCATGTGATAGCAAA 58.095 42.857 11.47 0.00 0.00 3.68
114 115 2.609459 AGTAGCGCATGTGATAGCAAAC 59.391 45.455 11.47 0.00 0.00 2.93
115 116 1.742761 AGCGCATGTGATAGCAAACT 58.257 45.000 11.47 0.00 0.00 2.66
116 117 2.905075 AGCGCATGTGATAGCAAACTA 58.095 42.857 11.47 0.00 0.00 2.24
117 118 3.470709 AGCGCATGTGATAGCAAACTAT 58.529 40.909 11.47 0.00 41.98 2.12
118 119 4.631131 AGCGCATGTGATAGCAAACTATA 58.369 39.130 11.47 0.00 39.28 1.31
119 120 4.687948 AGCGCATGTGATAGCAAACTATAG 59.312 41.667 11.47 0.00 39.28 1.31
120 121 4.449068 GCGCATGTGATAGCAAACTATAGT 59.551 41.667 11.26 0.00 39.28 2.12
121 122 5.050091 GCGCATGTGATAGCAAACTATAGTT 60.050 40.000 12.50 12.50 39.28 2.24
122 123 6.145534 GCGCATGTGATAGCAAACTATAGTTA 59.854 38.462 18.31 3.46 39.28 2.24
123 124 7.148573 GCGCATGTGATAGCAAACTATAGTTAT 60.149 37.037 18.31 8.30 39.28 1.89
124 125 8.712363 CGCATGTGATAGCAAACTATAGTTATT 58.288 33.333 18.31 9.52 39.28 1.40
125 126 9.817365 GCATGTGATAGCAAACTATAGTTATTG 57.183 33.333 18.31 14.45 39.28 1.90
142 143 7.772332 AGTTATTGTAATAAGGCTTCGACTG 57.228 36.000 1.30 0.00 31.94 3.51
143 144 7.328737 AGTTATTGTAATAAGGCTTCGACTGT 58.671 34.615 1.30 0.00 31.94 3.55
144 145 7.822822 AGTTATTGTAATAAGGCTTCGACTGTT 59.177 33.333 1.30 0.00 31.94 3.16
145 146 8.448615 GTTATTGTAATAAGGCTTCGACTGTTT 58.551 33.333 1.30 0.00 31.94 2.83
146 147 5.856126 TGTAATAAGGCTTCGACTGTTTG 57.144 39.130 1.30 0.00 0.00 2.93
147 148 4.693566 TGTAATAAGGCTTCGACTGTTTGG 59.306 41.667 1.30 0.00 0.00 3.28
148 149 2.922740 TAAGGCTTCGACTGTTTGGT 57.077 45.000 1.30 0.00 0.00 3.67
149 150 2.052782 AAGGCTTCGACTGTTTGGTT 57.947 45.000 0.00 0.00 0.00 3.67
150 151 2.922740 AGGCTTCGACTGTTTGGTTA 57.077 45.000 0.00 0.00 0.00 2.85
151 152 3.202829 AGGCTTCGACTGTTTGGTTAA 57.797 42.857 0.00 0.00 0.00 2.01
152 153 3.547746 AGGCTTCGACTGTTTGGTTAAA 58.452 40.909 0.00 0.00 0.00 1.52
153 154 3.314357 AGGCTTCGACTGTTTGGTTAAAC 59.686 43.478 0.00 0.00 45.04 2.01
161 162 2.983402 GTTTGGTTAAACGAGCCTCC 57.017 50.000 0.00 0.00 37.08 4.30
162 163 2.501261 GTTTGGTTAAACGAGCCTCCT 58.499 47.619 0.00 0.00 37.08 3.69
163 164 2.178912 TTGGTTAAACGAGCCTCCTG 57.821 50.000 0.00 0.00 0.00 3.86
164 165 1.344065 TGGTTAAACGAGCCTCCTGA 58.656 50.000 0.00 0.00 0.00 3.86
165 166 1.001633 TGGTTAAACGAGCCTCCTGAC 59.998 52.381 0.00 0.00 0.00 3.51
166 167 1.275573 GGTTAAACGAGCCTCCTGACT 59.724 52.381 0.00 0.00 0.00 3.41
167 168 2.289506 GGTTAAACGAGCCTCCTGACTT 60.290 50.000 0.00 0.00 0.00 3.01
168 169 3.400255 GTTAAACGAGCCTCCTGACTTT 58.600 45.455 0.00 0.00 0.00 2.66
169 170 4.562143 GGTTAAACGAGCCTCCTGACTTTA 60.562 45.833 0.00 0.00 0.00 1.85
170 171 3.983044 AAACGAGCCTCCTGACTTTAT 57.017 42.857 0.00 0.00 0.00 1.40
171 172 3.983044 AACGAGCCTCCTGACTTTATT 57.017 42.857 0.00 0.00 0.00 1.40
172 173 3.252974 ACGAGCCTCCTGACTTTATTG 57.747 47.619 0.00 0.00 0.00 1.90
173 174 2.567615 ACGAGCCTCCTGACTTTATTGT 59.432 45.455 0.00 0.00 0.00 2.71
174 175 3.190874 CGAGCCTCCTGACTTTATTGTC 58.809 50.000 0.00 0.00 37.47 3.18
175 176 3.368427 CGAGCCTCCTGACTTTATTGTCA 60.368 47.826 0.00 0.00 43.72 3.58
184 185 5.342806 TGACTTTATTGTCAGTTTGCTCG 57.657 39.130 0.00 0.00 41.43 5.03
185 186 4.814234 TGACTTTATTGTCAGTTTGCTCGT 59.186 37.500 0.00 0.00 41.43 4.18
186 187 5.986741 TGACTTTATTGTCAGTTTGCTCGTA 59.013 36.000 0.00 0.00 41.43 3.43
187 188 6.145534 TGACTTTATTGTCAGTTTGCTCGTAG 59.854 38.462 0.00 0.00 41.43 3.51
188 189 6.220930 ACTTTATTGTCAGTTTGCTCGTAGA 58.779 36.000 0.00 0.00 0.00 2.59
189 190 6.145696 ACTTTATTGTCAGTTTGCTCGTAGAC 59.854 38.462 0.00 0.00 0.00 2.59
190 191 2.046283 TGTCAGTTTGCTCGTAGACG 57.954 50.000 0.00 0.00 41.45 4.18
213 214 8.922058 ACGATGTAAACGTGTTCTAATCTAAT 57.078 30.769 0.00 0.00 46.05 1.73
221 222 9.801714 AAACGTGTTCTAATCTAATAAAACGTG 57.198 29.630 3.33 0.00 40.08 4.49
222 223 8.524870 ACGTGTTCTAATCTAATAAAACGTGT 57.475 30.769 1.81 0.00 38.89 4.49
223 224 8.981647 ACGTGTTCTAATCTAATAAAACGTGTT 58.018 29.630 0.00 0.00 38.89 3.32
224 225 9.456797 CGTGTTCTAATCTAATAAAACGTGTTC 57.543 33.333 0.00 0.00 0.00 3.18
243 244 9.310716 ACGTGTTCTAATCTAATAAAGCTAACC 57.689 33.333 0.00 0.00 0.00 2.85
244 245 9.309516 CGTGTTCTAATCTAATAAAGCTAACCA 57.690 33.333 0.00 0.00 0.00 3.67
251 252 7.693969 ATCTAATAAAGCTAACCATGATGGC 57.306 36.000 12.25 0.00 42.67 4.40
252 253 6.003950 TCTAATAAAGCTAACCATGATGGCC 58.996 40.000 12.25 0.00 42.67 5.36
253 254 2.834638 AAAGCTAACCATGATGGCCT 57.165 45.000 12.25 1.24 42.67 5.19
254 255 2.834638 AAGCTAACCATGATGGCCTT 57.165 45.000 12.25 6.43 42.67 4.35
255 256 2.834638 AGCTAACCATGATGGCCTTT 57.165 45.000 12.25 0.87 42.67 3.11
256 257 3.105959 AGCTAACCATGATGGCCTTTT 57.894 42.857 12.25 0.48 42.67 2.27
257 258 3.444029 AGCTAACCATGATGGCCTTTTT 58.556 40.909 12.25 0.08 42.67 1.94
258 259 3.448660 AGCTAACCATGATGGCCTTTTTC 59.551 43.478 12.25 0.00 42.67 2.29
259 260 3.448660 GCTAACCATGATGGCCTTTTTCT 59.551 43.478 12.25 0.00 42.67 2.52
260 261 4.644685 GCTAACCATGATGGCCTTTTTCTA 59.355 41.667 12.25 0.00 42.67 2.10
261 262 5.127031 GCTAACCATGATGGCCTTTTTCTAA 59.873 40.000 12.25 0.00 42.67 2.10
262 263 6.350949 GCTAACCATGATGGCCTTTTTCTAAA 60.351 38.462 12.25 0.00 42.67 1.85
263 264 6.432403 AACCATGATGGCCTTTTTCTAAAA 57.568 33.333 12.25 0.00 42.67 1.52
264 265 6.432403 ACCATGATGGCCTTTTTCTAAAAA 57.568 33.333 12.25 1.05 42.67 1.94
291 292 4.467232 GTGCGCACACACACAAAA 57.533 50.000 34.52 0.00 46.61 2.44
292 293 2.730626 GTGCGCACACACACAAAAA 58.269 47.368 34.52 0.00 46.61 1.94
293 294 0.639756 GTGCGCACACACACAAAAAG 59.360 50.000 34.52 0.00 46.61 2.27
294 295 0.457509 TGCGCACACACACAAAAAGG 60.458 50.000 5.66 0.00 0.00 3.11
295 296 1.145162 GCGCACACACACAAAAAGGG 61.145 55.000 0.30 0.00 0.00 3.95
296 297 0.172352 CGCACACACACAAAAAGGGT 59.828 50.000 0.00 0.00 0.00 4.34
297 298 1.402259 CGCACACACACAAAAAGGGTA 59.598 47.619 0.00 0.00 27.98 3.69
298 299 2.793237 CGCACACACACAAAAAGGGTAC 60.793 50.000 0.00 0.00 27.98 3.34
299 300 2.164624 GCACACACACAAAAAGGGTACA 59.835 45.455 0.00 0.00 27.98 2.90
300 301 3.765026 CACACACACAAAAAGGGTACAC 58.235 45.455 0.00 0.00 27.98 2.90
301 302 3.191581 CACACACACAAAAAGGGTACACA 59.808 43.478 0.00 0.00 27.98 3.72
302 303 3.191791 ACACACACAAAAAGGGTACACAC 59.808 43.478 0.00 0.00 27.98 3.82
303 304 2.756207 ACACACAAAAAGGGTACACACC 59.244 45.455 0.00 0.00 44.96 4.16
311 312 2.735857 GGTACACACCCACGCGAC 60.736 66.667 15.93 0.00 39.11 5.19
312 313 2.735857 GTACACACCCACGCGACC 60.736 66.667 15.93 0.00 0.00 4.79
313 314 3.225061 TACACACCCACGCGACCA 61.225 61.111 15.93 0.00 0.00 4.02
314 315 2.794028 TACACACCCACGCGACCAA 61.794 57.895 15.93 0.00 0.00 3.67
315 316 2.974935 TACACACCCACGCGACCAAC 62.975 60.000 15.93 0.00 0.00 3.77
316 317 3.857038 ACACCCACGCGACCAACT 61.857 61.111 15.93 0.00 0.00 3.16
317 318 3.041940 CACCCACGCGACCAACTC 61.042 66.667 15.93 0.00 0.00 3.01
318 319 3.542676 ACCCACGCGACCAACTCA 61.543 61.111 15.93 0.00 0.00 3.41
319 320 2.280524 CCCACGCGACCAACTCAA 60.281 61.111 15.93 0.00 0.00 3.02
320 321 1.890041 CCCACGCGACCAACTCAAA 60.890 57.895 15.93 0.00 0.00 2.69
321 322 1.440938 CCCACGCGACCAACTCAAAA 61.441 55.000 15.93 0.00 0.00 2.44
322 323 0.378962 CCACGCGACCAACTCAAAAA 59.621 50.000 15.93 0.00 0.00 1.94
343 344 6.650427 AAAAAGAAACATCAGTTCTACCCC 57.350 37.500 0.00 0.00 36.84 4.95
344 345 4.993705 AAGAAACATCAGTTCTACCCCA 57.006 40.909 0.00 0.00 36.84 4.96
345 346 5.520748 AAGAAACATCAGTTCTACCCCAT 57.479 39.130 0.00 0.00 36.84 4.00
346 347 4.848357 AGAAACATCAGTTCTACCCCATG 58.152 43.478 0.00 0.00 36.84 3.66
347 348 4.536090 AGAAACATCAGTTCTACCCCATGA 59.464 41.667 0.00 0.00 36.84 3.07
348 349 5.192522 AGAAACATCAGTTCTACCCCATGAT 59.807 40.000 0.00 0.00 36.84 2.45
349 350 4.696479 ACATCAGTTCTACCCCATGATC 57.304 45.455 0.00 0.00 0.00 2.92
350 351 4.040047 ACATCAGTTCTACCCCATGATCA 58.960 43.478 0.00 0.00 0.00 2.92
351 352 4.102210 ACATCAGTTCTACCCCATGATCAG 59.898 45.833 0.09 0.00 0.00 2.90
352 353 3.994317 TCAGTTCTACCCCATGATCAGA 58.006 45.455 0.09 0.00 0.00 3.27
353 354 4.361783 TCAGTTCTACCCCATGATCAGAA 58.638 43.478 0.09 0.00 0.00 3.02
354 355 4.971282 TCAGTTCTACCCCATGATCAGAAT 59.029 41.667 0.09 0.00 0.00 2.40
355 356 5.429762 TCAGTTCTACCCCATGATCAGAATT 59.570 40.000 0.09 0.00 0.00 2.17
356 357 5.762218 CAGTTCTACCCCATGATCAGAATTC 59.238 44.000 0.09 0.00 0.00 2.17
357 358 5.429762 AGTTCTACCCCATGATCAGAATTCA 59.570 40.000 8.44 0.00 0.00 2.57
358 359 5.557576 TCTACCCCATGATCAGAATTCAG 57.442 43.478 8.44 0.00 0.00 3.02
359 360 5.218959 TCTACCCCATGATCAGAATTCAGA 58.781 41.667 8.44 5.51 0.00 3.27
360 361 4.868172 ACCCCATGATCAGAATTCAGAA 57.132 40.909 8.44 0.00 0.00 3.02
361 362 4.530875 ACCCCATGATCAGAATTCAGAAC 58.469 43.478 8.44 4.69 0.00 3.01
362 363 4.018141 ACCCCATGATCAGAATTCAGAACA 60.018 41.667 12.15 12.15 0.00 3.18
363 364 4.951715 CCCCATGATCAGAATTCAGAACAA 59.048 41.667 13.45 0.15 0.00 2.83
364 365 5.419788 CCCCATGATCAGAATTCAGAACAAA 59.580 40.000 13.45 0.00 0.00 2.83
365 366 6.405508 CCCCATGATCAGAATTCAGAACAAAG 60.406 42.308 13.45 9.72 0.00 2.77
366 367 6.034591 CCATGATCAGAATTCAGAACAAAGC 58.965 40.000 13.45 0.00 0.00 3.51
367 368 6.349860 CCATGATCAGAATTCAGAACAAAGCA 60.350 38.462 13.45 0.00 0.00 3.91
368 369 6.829229 TGATCAGAATTCAGAACAAAGCAT 57.171 33.333 8.44 0.00 0.00 3.79
369 370 7.223260 TGATCAGAATTCAGAACAAAGCATT 57.777 32.000 8.44 0.00 0.00 3.56
370 371 7.310664 TGATCAGAATTCAGAACAAAGCATTC 58.689 34.615 8.44 0.00 0.00 2.67
371 372 6.017400 TCAGAATTCAGAACAAAGCATTCC 57.983 37.500 8.44 0.00 0.00 3.01
372 373 5.535783 TCAGAATTCAGAACAAAGCATTCCA 59.464 36.000 8.44 0.00 0.00 3.53
373 374 5.632347 CAGAATTCAGAACAAAGCATTCCAC 59.368 40.000 8.44 0.00 0.00 4.02
374 375 3.624326 TTCAGAACAAAGCATTCCACG 57.376 42.857 0.00 0.00 0.00 4.94
375 376 2.571212 TCAGAACAAAGCATTCCACGT 58.429 42.857 0.00 0.00 0.00 4.49
376 377 2.548057 TCAGAACAAAGCATTCCACGTC 59.452 45.455 0.00 0.00 0.00 4.34
377 378 2.290367 CAGAACAAAGCATTCCACGTCA 59.710 45.455 0.00 0.00 0.00 4.35
412 413 6.220201 TGCTAAAACAAAAAGTATTCTGGCC 58.780 36.000 0.00 0.00 0.00 5.36
559 560 2.034879 CAAACGGACGAGCCATGCT 61.035 57.895 0.00 0.00 43.88 3.79
569 571 1.002134 AGCCATGCTACACACACCC 60.002 57.895 0.00 0.00 36.99 4.61
570 572 2.046285 GCCATGCTACACACACCCC 61.046 63.158 0.00 0.00 0.00 4.95
635 637 4.955089 GCGTTTTGCCGGAAATCA 57.045 50.000 5.05 0.00 37.76 2.57
636 638 3.187211 GCGTTTTGCCGGAAATCAA 57.813 47.368 5.05 0.00 37.76 2.57
646 649 1.469079 CCGGAAATCAAAATCCACCGC 60.469 52.381 0.00 0.00 37.98 5.68
689 692 1.294138 CCCAGCCCGAAGACGTTTA 59.706 57.895 0.00 0.00 37.88 2.01
787 808 3.749064 GACTGAGCCGCGAGTCCA 61.749 66.667 8.23 0.00 33.76 4.02
788 809 3.282745 GACTGAGCCGCGAGTCCAA 62.283 63.158 8.23 0.00 33.76 3.53
967 993 3.988050 AACCCGTGAGCCCCCGATA 62.988 63.158 0.00 0.00 0.00 2.92
970 996 3.524606 CGTGAGCCCCCGATACGT 61.525 66.667 0.00 0.00 0.00 3.57
1032 1066 2.579201 CGCACCATCTCGTTCCCT 59.421 61.111 0.00 0.00 0.00 4.20
1128 1162 2.992689 TTCCACCCGCTCGTGCTA 60.993 61.111 7.97 0.00 36.97 3.49
1710 1753 1.153568 CGCGCCCTCAAGATTCTCA 60.154 57.895 0.00 0.00 0.00 3.27
1711 1754 0.531532 CGCGCCCTCAAGATTCTCAT 60.532 55.000 0.00 0.00 0.00 2.90
1716 1759 1.139654 CCCTCAAGATTCTCATCCGCA 59.860 52.381 0.00 0.00 0.00 5.69
1833 1903 1.800805 AACAGAGCATCACCAACGAG 58.199 50.000 0.00 0.00 37.82 4.18
1854 1924 2.963371 GACGCGTCCACTTCCTCT 59.037 61.111 28.61 0.00 0.00 3.69
2045 2124 1.026718 CCAACCTTCTGATCCCGCAC 61.027 60.000 0.00 0.00 0.00 5.34
2047 2126 2.202932 CCTTCTGATCCCGCACCG 60.203 66.667 0.00 0.00 0.00 4.94
2100 2188 2.488153 GTGGCTTGGACAGGATTTGTAC 59.512 50.000 0.00 0.00 41.05 2.90
2111 2199 8.520351 TGGACAGGATTTGTACATAGTATATCG 58.480 37.037 0.00 0.00 45.83 2.92
2114 2208 9.524496 ACAGGATTTGTACATAGTATATCGGTA 57.476 33.333 0.00 0.00 38.56 4.02
2116 2210 8.684520 AGGATTTGTACATAGTATATCGGTAGC 58.315 37.037 0.00 0.00 0.00 3.58
2119 2213 9.803315 ATTTGTACATAGTATATCGGTAGCATG 57.197 33.333 0.00 0.00 0.00 4.06
2191 2285 2.156098 GATTTGGAACCTGGCGTTACA 58.844 47.619 0.00 0.00 43.96 2.41
2236 2330 1.515521 CCGGTTCTTGACAGCAACCC 61.516 60.000 10.56 0.00 36.93 4.11
2237 2331 0.535102 CGGTTCTTGACAGCAACCCT 60.535 55.000 10.56 0.00 36.93 4.34
2250 2344 0.392998 CAACCCTCTCCCATGGAACG 60.393 60.000 15.22 0.44 0.00 3.95
2261 2355 2.033299 CCCATGGAACGGAATGAATTCG 59.967 50.000 15.22 0.00 37.67 3.34
2284 2378 2.351726 ACGCCGCATATTCTTGTTTCTC 59.648 45.455 0.00 0.00 0.00 2.87
2291 2385 5.512788 CGCATATTCTTGTTTCTCGCAAAAT 59.487 36.000 0.00 0.00 0.00 1.82
2372 2466 1.528586 GATCGCGCACAGAATATGCTT 59.471 47.619 8.75 0.00 41.10 3.91
2446 2544 0.105224 TGAACCGAACCGCAAGAAGA 59.895 50.000 0.00 0.00 43.02 2.87
2448 2546 0.106149 AACCGAACCGCAAGAAGAGT 59.894 50.000 0.00 0.00 43.02 3.24
2517 2617 1.237285 GCTGCAAGGGAAAAGCGAGA 61.237 55.000 0.00 0.00 0.00 4.04
2542 2642 1.244816 ACGTCAGCACAGCAGTACTA 58.755 50.000 0.00 0.00 0.00 1.82
2547 2647 4.167268 GTCAGCACAGCAGTACTACTAAC 58.833 47.826 0.00 0.00 0.00 2.34
2548 2648 3.192844 TCAGCACAGCAGTACTACTAACC 59.807 47.826 0.00 0.00 0.00 2.85
2549 2649 2.163815 AGCACAGCAGTACTACTAACCG 59.836 50.000 0.00 0.00 0.00 4.44
2551 2651 2.163815 CACAGCAGTACTACTAACCGCT 59.836 50.000 0.00 0.00 0.00 5.52
2552 2652 2.824341 ACAGCAGTACTACTAACCGCTT 59.176 45.455 0.00 0.00 0.00 4.68
2553 2653 4.012374 ACAGCAGTACTACTAACCGCTTA 58.988 43.478 0.00 0.00 0.00 3.09
2554 2654 4.460382 ACAGCAGTACTACTAACCGCTTAA 59.540 41.667 0.00 0.00 0.00 1.85
2555 2655 4.797349 CAGCAGTACTACTAACCGCTTAAC 59.203 45.833 0.00 0.00 0.00 2.01
2556 2656 4.108336 GCAGTACTACTAACCGCTTAACC 58.892 47.826 0.00 0.00 0.00 2.85
2604 2704 1.153647 CCTTGGCGAGCACGTATGA 60.154 57.895 5.23 0.00 41.98 2.15
2640 2744 4.293648 CACGTGCTGTCGGGTCCA 62.294 66.667 0.82 0.00 34.94 4.02
2643 2747 4.394712 GTGCTGTCGGGTCCAGGG 62.395 72.222 0.00 0.00 0.00 4.45
2652 2756 4.966787 GGTCCAGGGCGTGCCAAA 62.967 66.667 13.76 0.00 37.98 3.28
2721 2825 2.173669 GTGCGTCTGTGCTGTGTGT 61.174 57.895 0.00 0.00 35.36 3.72
2790 2899 1.294659 GCACTCTACTGCACTGCACC 61.295 60.000 0.00 0.00 37.11 5.01
2898 3021 1.141234 GAAAGACCTAGGACGCCGG 59.859 63.158 17.98 0.00 0.00 6.13
2916 3039 2.595386 CGGTCAGCTTGGCAAAAATAC 58.405 47.619 0.00 0.00 0.00 1.89
2925 3048 1.067283 TGGCAAAAATACCATGTGCGG 60.067 47.619 0.00 0.00 36.04 5.69
2940 3063 4.778415 CGGTGTCACGGAGCCGAG 62.778 72.222 16.83 8.07 46.33 4.63
2942 3065 4.057428 GTGTCACGGAGCCGAGCT 62.057 66.667 16.83 0.00 43.88 4.09
2943 3066 3.303135 TGTCACGGAGCCGAGCTT 61.303 61.111 16.83 0.00 39.88 3.74
2945 3068 2.676822 TCACGGAGCCGAGCTTCT 60.677 61.111 16.83 0.00 39.88 2.85
2947 3070 2.676822 ACGGAGCCGAGCTTCTCA 60.677 61.111 16.83 0.00 39.88 3.27
2949 3072 1.079819 CGGAGCCGAGCTTCTCAAA 60.080 57.895 2.00 0.00 39.88 2.69
2951 3074 1.021920 GGAGCCGAGCTTCTCAAACC 61.022 60.000 11.85 0.00 39.88 3.27
2953 3076 2.391389 GCCGAGCTTCTCAAACCCG 61.391 63.158 0.00 0.00 0.00 5.28
2954 3077 1.004918 CCGAGCTTCTCAAACCCGT 60.005 57.895 0.00 0.00 0.00 5.28
2955 3078 1.014564 CCGAGCTTCTCAAACCCGTC 61.015 60.000 0.00 0.00 0.00 4.79
2956 3079 0.038159 CGAGCTTCTCAAACCCGTCT 60.038 55.000 0.00 0.00 0.00 4.18
2957 3080 1.715993 GAGCTTCTCAAACCCGTCTC 58.284 55.000 0.00 0.00 0.00 3.36
2958 3081 0.321996 AGCTTCTCAAACCCGTCTCC 59.678 55.000 0.00 0.00 0.00 3.71
2959 3082 0.321996 GCTTCTCAAACCCGTCTCCT 59.678 55.000 0.00 0.00 0.00 3.69
2960 3083 1.673329 GCTTCTCAAACCCGTCTCCTC 60.673 57.143 0.00 0.00 0.00 3.71
2961 3084 0.601558 TTCTCAAACCCGTCTCCTCG 59.398 55.000 0.00 0.00 0.00 4.63
2962 3085 0.251033 TCTCAAACCCGTCTCCTCGA 60.251 55.000 0.00 0.00 0.00 4.04
2963 3086 0.601558 CTCAAACCCGTCTCCTCGAA 59.398 55.000 0.00 0.00 0.00 3.71
2964 3087 0.316204 TCAAACCCGTCTCCTCGAAC 59.684 55.000 0.00 0.00 0.00 3.95
2965 3088 1.007336 CAAACCCGTCTCCTCGAACG 61.007 60.000 0.41 0.41 0.00 3.95
2969 3092 2.330372 CCGTCTCCTCGAACGTCCA 61.330 63.158 6.62 0.00 0.00 4.02
2983 3106 1.268386 ACGTCCACTATATGTCGTGCG 60.268 52.381 0.00 0.00 36.23 5.34
2993 3116 2.126189 GTCGTGCGGACAGGGTAC 60.126 66.667 8.11 0.00 45.36 3.34
3023 3149 4.190304 TCACAAAATCGTGACTCAAACG 57.810 40.909 0.00 0.00 40.94 3.60
3034 3160 2.632996 TGACTCAAACGGACTCCTCAAT 59.367 45.455 0.00 0.00 0.00 2.57
3035 3161 3.071023 TGACTCAAACGGACTCCTCAATT 59.929 43.478 0.00 0.00 0.00 2.32
3036 3162 3.665190 ACTCAAACGGACTCCTCAATTC 58.335 45.455 0.00 0.00 0.00 2.17
3037 3163 2.668457 CTCAAACGGACTCCTCAATTCG 59.332 50.000 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.680338 ATAAGGTTGCCGCTTCATCC 58.320 50.000 0.00 0.00 0.00 3.51
1 2 2.286418 CGAATAAGGTTGCCGCTTCATC 60.286 50.000 0.00 0.00 0.00 2.92
2 3 1.670811 CGAATAAGGTTGCCGCTTCAT 59.329 47.619 0.00 0.00 0.00 2.57
3 4 1.083489 CGAATAAGGTTGCCGCTTCA 58.917 50.000 0.00 0.00 0.00 3.02
4 5 0.248094 GCGAATAAGGTTGCCGCTTC 60.248 55.000 0.00 0.00 42.24 3.86
5 6 1.800681 GCGAATAAGGTTGCCGCTT 59.199 52.632 0.00 0.00 42.24 4.68
6 7 3.497879 GCGAATAAGGTTGCCGCT 58.502 55.556 0.00 0.00 42.24 5.52
7 8 1.062525 CAGCGAATAAGGTTGCCGC 59.937 57.895 0.00 0.00 45.39 6.53
8 9 0.652592 CTCAGCGAATAAGGTTGCCG 59.347 55.000 0.00 0.00 0.00 5.69
9 10 1.398390 CACTCAGCGAATAAGGTTGCC 59.602 52.381 0.00 0.00 0.00 4.52
10 11 2.076863 ACACTCAGCGAATAAGGTTGC 58.923 47.619 0.00 0.00 0.00 4.17
11 12 3.067106 ACACACTCAGCGAATAAGGTTG 58.933 45.455 0.00 0.00 0.00 3.77
12 13 3.067106 CACACACTCAGCGAATAAGGTT 58.933 45.455 0.00 0.00 0.00 3.50
13 14 2.612972 CCACACACTCAGCGAATAAGGT 60.613 50.000 0.00 0.00 0.00 3.50
14 15 2.002586 CCACACACTCAGCGAATAAGG 58.997 52.381 0.00 0.00 0.00 2.69
15 16 2.959516 TCCACACACTCAGCGAATAAG 58.040 47.619 0.00 0.00 0.00 1.73
16 17 3.610040 ATCCACACACTCAGCGAATAA 57.390 42.857 0.00 0.00 0.00 1.40
17 18 3.610040 AATCCACACACTCAGCGAATA 57.390 42.857 0.00 0.00 0.00 1.75
18 19 2.479566 AATCCACACACTCAGCGAAT 57.520 45.000 0.00 0.00 0.00 3.34
19 20 2.254546 AAATCCACACACTCAGCGAA 57.745 45.000 0.00 0.00 0.00 4.70
20 21 2.353704 CCTAAATCCACACACTCAGCGA 60.354 50.000 0.00 0.00 0.00 4.93
21 22 2.002586 CCTAAATCCACACACTCAGCG 58.997 52.381 0.00 0.00 0.00 5.18
22 23 3.334583 TCCTAAATCCACACACTCAGC 57.665 47.619 0.00 0.00 0.00 4.26
23 24 5.350504 AGATCCTAAATCCACACACTCAG 57.649 43.478 0.00 0.00 0.00 3.35
24 25 6.611236 TCATAGATCCTAAATCCACACACTCA 59.389 38.462 0.00 0.00 0.00 3.41
25 26 7.055667 TCATAGATCCTAAATCCACACACTC 57.944 40.000 0.00 0.00 0.00 3.51
26 27 7.623999 ATCATAGATCCTAAATCCACACACT 57.376 36.000 0.00 0.00 0.00 3.55
27 28 7.173907 CCAATCATAGATCCTAAATCCACACAC 59.826 40.741 0.00 0.00 0.00 3.82
28 29 7.072328 TCCAATCATAGATCCTAAATCCACACA 59.928 37.037 0.00 0.00 0.00 3.72
29 30 7.453393 TCCAATCATAGATCCTAAATCCACAC 58.547 38.462 0.00 0.00 0.00 3.82
30 31 7.631510 TCCAATCATAGATCCTAAATCCACA 57.368 36.000 0.00 0.00 0.00 4.17
31 32 8.924511 TTTCCAATCATAGATCCTAAATCCAC 57.075 34.615 0.00 0.00 0.00 4.02
32 33 9.524496 CATTTCCAATCATAGATCCTAAATCCA 57.476 33.333 0.00 0.00 0.00 3.41
33 34 9.525826 ACATTTCCAATCATAGATCCTAAATCC 57.474 33.333 0.00 0.00 0.00 3.01
37 38 9.511272 CATGACATTTCCAATCATAGATCCTAA 57.489 33.333 0.00 0.00 31.83 2.69
38 39 8.663167 ACATGACATTTCCAATCATAGATCCTA 58.337 33.333 0.00 0.00 31.83 2.94
39 40 7.524290 ACATGACATTTCCAATCATAGATCCT 58.476 34.615 0.00 0.00 31.83 3.24
40 41 7.756395 ACATGACATTTCCAATCATAGATCC 57.244 36.000 0.00 0.00 31.83 3.36
44 45 9.241317 GCTTAAACATGACATTTCCAATCATAG 57.759 33.333 0.00 0.00 31.83 2.23
45 46 8.747471 TGCTTAAACATGACATTTCCAATCATA 58.253 29.630 0.00 0.00 31.83 2.15
46 47 7.613585 TGCTTAAACATGACATTTCCAATCAT 58.386 30.769 0.00 0.00 33.28 2.45
47 48 6.990798 TGCTTAAACATGACATTTCCAATCA 58.009 32.000 0.00 0.00 0.00 2.57
48 49 8.385111 CAATGCTTAAACATGACATTTCCAATC 58.615 33.333 0.00 0.00 0.00 2.67
49 50 7.879160 ACAATGCTTAAACATGACATTTCCAAT 59.121 29.630 0.00 0.00 0.00 3.16
50 51 7.215789 ACAATGCTTAAACATGACATTTCCAA 58.784 30.769 0.00 0.00 0.00 3.53
51 52 6.757237 ACAATGCTTAAACATGACATTTCCA 58.243 32.000 0.00 0.00 0.00 3.53
52 53 7.092716 AGACAATGCTTAAACATGACATTTCC 58.907 34.615 0.00 0.00 0.00 3.13
53 54 8.524870 AAGACAATGCTTAAACATGACATTTC 57.475 30.769 0.00 1.72 0.00 2.17
54 55 7.326789 CGAAGACAATGCTTAAACATGACATTT 59.673 33.333 0.00 0.00 0.00 2.32
55 56 6.803320 CGAAGACAATGCTTAAACATGACATT 59.197 34.615 0.00 0.00 0.00 2.71
56 57 6.072508 ACGAAGACAATGCTTAAACATGACAT 60.073 34.615 0.00 0.00 0.00 3.06
57 58 5.238432 ACGAAGACAATGCTTAAACATGACA 59.762 36.000 0.00 0.00 0.00 3.58
58 59 5.689819 ACGAAGACAATGCTTAAACATGAC 58.310 37.500 0.00 0.00 0.00 3.06
59 60 5.940192 ACGAAGACAATGCTTAAACATGA 57.060 34.783 0.00 0.00 0.00 3.07
60 61 6.373779 AGAACGAAGACAATGCTTAAACATG 58.626 36.000 0.00 0.00 0.00 3.21
61 62 6.560253 AGAACGAAGACAATGCTTAAACAT 57.440 33.333 0.00 0.00 0.00 2.71
62 63 6.183360 ACAAGAACGAAGACAATGCTTAAACA 60.183 34.615 0.00 0.00 0.00 2.83
63 64 6.199393 ACAAGAACGAAGACAATGCTTAAAC 58.801 36.000 0.00 0.00 0.00 2.01
64 65 6.371809 ACAAGAACGAAGACAATGCTTAAA 57.628 33.333 0.00 0.00 0.00 1.52
65 66 7.485418 TTACAAGAACGAAGACAATGCTTAA 57.515 32.000 0.00 0.00 0.00 1.85
66 67 7.667043 ATTACAAGAACGAAGACAATGCTTA 57.333 32.000 0.00 0.00 0.00 3.09
67 68 6.560253 ATTACAAGAACGAAGACAATGCTT 57.440 33.333 0.00 0.00 0.00 3.91
68 69 7.849804 ATATTACAAGAACGAAGACAATGCT 57.150 32.000 0.00 0.00 0.00 3.79
69 70 8.818057 ACTATATTACAAGAACGAAGACAATGC 58.182 33.333 0.00 0.00 0.00 3.56
72 73 9.512435 GCTACTATATTACAAGAACGAAGACAA 57.488 33.333 0.00 0.00 0.00 3.18
73 74 7.854422 CGCTACTATATTACAAGAACGAAGACA 59.146 37.037 0.00 0.00 0.00 3.41
74 75 7.149160 GCGCTACTATATTACAAGAACGAAGAC 60.149 40.741 0.00 0.00 0.00 3.01
75 76 6.854892 GCGCTACTATATTACAAGAACGAAGA 59.145 38.462 0.00 0.00 0.00 2.87
76 77 6.635641 TGCGCTACTATATTACAAGAACGAAG 59.364 38.462 9.73 0.00 0.00 3.79
77 78 6.497437 TGCGCTACTATATTACAAGAACGAA 58.503 36.000 9.73 0.00 0.00 3.85
78 79 6.063640 TGCGCTACTATATTACAAGAACGA 57.936 37.500 9.73 0.00 0.00 3.85
79 80 6.362551 ACATGCGCTACTATATTACAAGAACG 59.637 38.462 9.73 0.00 0.00 3.95
80 81 7.381408 TCACATGCGCTACTATATTACAAGAAC 59.619 37.037 9.73 0.00 0.00 3.01
81 82 7.430441 TCACATGCGCTACTATATTACAAGAA 58.570 34.615 9.73 0.00 0.00 2.52
82 83 6.977213 TCACATGCGCTACTATATTACAAGA 58.023 36.000 9.73 0.00 0.00 3.02
83 84 7.818493 ATCACATGCGCTACTATATTACAAG 57.182 36.000 9.73 0.00 0.00 3.16
84 85 7.488150 GCTATCACATGCGCTACTATATTACAA 59.512 37.037 9.73 0.00 0.00 2.41
85 86 6.972901 GCTATCACATGCGCTACTATATTACA 59.027 38.462 9.73 0.00 0.00 2.41
86 87 6.972901 TGCTATCACATGCGCTACTATATTAC 59.027 38.462 9.73 0.00 0.00 1.89
87 88 7.095695 TGCTATCACATGCGCTACTATATTA 57.904 36.000 9.73 0.00 0.00 0.98
88 89 5.965922 TGCTATCACATGCGCTACTATATT 58.034 37.500 9.73 0.00 0.00 1.28
89 90 5.582689 TGCTATCACATGCGCTACTATAT 57.417 39.130 9.73 0.00 0.00 0.86
90 91 5.385509 TTGCTATCACATGCGCTACTATA 57.614 39.130 9.73 0.00 0.00 1.31
91 92 3.942130 TGCTATCACATGCGCTACTAT 57.058 42.857 9.73 0.00 0.00 2.12
92 93 3.726291 TTGCTATCACATGCGCTACTA 57.274 42.857 9.73 0.00 0.00 1.82
93 94 2.602257 TTGCTATCACATGCGCTACT 57.398 45.000 9.73 0.00 0.00 2.57
94 95 2.609459 AGTTTGCTATCACATGCGCTAC 59.391 45.455 9.73 0.00 0.00 3.58
95 96 2.905075 AGTTTGCTATCACATGCGCTA 58.095 42.857 9.73 0.00 0.00 4.26
96 97 1.742761 AGTTTGCTATCACATGCGCT 58.257 45.000 9.73 0.00 0.00 5.92
97 98 3.885484 ATAGTTTGCTATCACATGCGC 57.115 42.857 0.00 0.00 32.78 6.09
98 99 6.530913 AACTATAGTTTGCTATCACATGCG 57.469 37.500 12.50 0.00 38.71 4.73
99 100 9.817365 CAATAACTATAGTTTGCTATCACATGC 57.183 33.333 22.66 0.00 38.71 4.06
116 117 9.477484 CAGTCGAAGCCTTATTACAATAACTAT 57.523 33.333 0.00 0.00 0.00 2.12
117 118 8.472413 ACAGTCGAAGCCTTATTACAATAACTA 58.528 33.333 0.00 0.00 0.00 2.24
118 119 7.328737 ACAGTCGAAGCCTTATTACAATAACT 58.671 34.615 0.00 0.00 0.00 2.24
119 120 7.535489 ACAGTCGAAGCCTTATTACAATAAC 57.465 36.000 0.00 0.00 0.00 1.89
120 121 8.447833 CAAACAGTCGAAGCCTTATTACAATAA 58.552 33.333 0.00 0.00 0.00 1.40
121 122 7.065324 CCAAACAGTCGAAGCCTTATTACAATA 59.935 37.037 0.00 0.00 0.00 1.90
122 123 6.128007 CCAAACAGTCGAAGCCTTATTACAAT 60.128 38.462 0.00 0.00 0.00 2.71
123 124 5.180492 CCAAACAGTCGAAGCCTTATTACAA 59.820 40.000 0.00 0.00 0.00 2.41
124 125 4.693566 CCAAACAGTCGAAGCCTTATTACA 59.306 41.667 0.00 0.00 0.00 2.41
125 126 4.694037 ACCAAACAGTCGAAGCCTTATTAC 59.306 41.667 0.00 0.00 0.00 1.89
126 127 4.901868 ACCAAACAGTCGAAGCCTTATTA 58.098 39.130 0.00 0.00 0.00 0.98
127 128 3.751518 ACCAAACAGTCGAAGCCTTATT 58.248 40.909 0.00 0.00 0.00 1.40
128 129 3.418684 ACCAAACAGTCGAAGCCTTAT 57.581 42.857 0.00 0.00 0.00 1.73
129 130 2.922740 ACCAAACAGTCGAAGCCTTA 57.077 45.000 0.00 0.00 0.00 2.69
130 131 2.052782 AACCAAACAGTCGAAGCCTT 57.947 45.000 0.00 0.00 0.00 4.35
131 132 2.922740 TAACCAAACAGTCGAAGCCT 57.077 45.000 0.00 0.00 0.00 4.58
132 133 3.624900 GTTTAACCAAACAGTCGAAGCC 58.375 45.455 0.00 0.00 43.02 4.35
133 134 3.001533 TCGTTTAACCAAACAGTCGAAGC 59.998 43.478 0.00 0.00 43.58 3.86
134 135 4.758561 CTCGTTTAACCAAACAGTCGAAG 58.241 43.478 0.00 0.00 43.58 3.79
135 136 3.001533 GCTCGTTTAACCAAACAGTCGAA 59.998 43.478 0.00 0.00 43.58 3.71
136 137 2.540931 GCTCGTTTAACCAAACAGTCGA 59.459 45.455 1.65 0.00 43.58 4.20
137 138 2.349155 GGCTCGTTTAACCAAACAGTCG 60.349 50.000 1.65 0.00 43.58 4.18
138 139 2.876550 AGGCTCGTTTAACCAAACAGTC 59.123 45.455 1.65 0.46 43.58 3.51
139 140 2.876550 GAGGCTCGTTTAACCAAACAGT 59.123 45.455 0.00 0.00 43.58 3.55
140 141 2.225727 GGAGGCTCGTTTAACCAAACAG 59.774 50.000 8.69 0.16 43.58 3.16
141 142 2.158726 AGGAGGCTCGTTTAACCAAACA 60.159 45.455 8.69 0.00 43.58 2.83
142 143 2.225727 CAGGAGGCTCGTTTAACCAAAC 59.774 50.000 7.04 0.00 40.60 2.93
143 144 2.105134 TCAGGAGGCTCGTTTAACCAAA 59.895 45.455 7.04 0.00 0.00 3.28
144 145 1.695242 TCAGGAGGCTCGTTTAACCAA 59.305 47.619 7.04 0.00 0.00 3.67
145 146 1.001633 GTCAGGAGGCTCGTTTAACCA 59.998 52.381 7.04 0.00 0.00 3.67
146 147 1.275573 AGTCAGGAGGCTCGTTTAACC 59.724 52.381 7.04 0.00 0.00 2.85
147 148 2.745515 AGTCAGGAGGCTCGTTTAAC 57.254 50.000 7.04 6.51 0.00 2.01
148 149 3.764237 AAAGTCAGGAGGCTCGTTTAA 57.236 42.857 7.04 0.00 0.00 1.52
149 150 5.175859 CAATAAAGTCAGGAGGCTCGTTTA 58.824 41.667 7.04 4.40 0.00 2.01
150 151 3.983044 ATAAAGTCAGGAGGCTCGTTT 57.017 42.857 7.04 2.14 0.00 3.60
151 152 3.008049 ACAATAAAGTCAGGAGGCTCGTT 59.992 43.478 7.04 0.00 0.00 3.85
152 153 2.567615 ACAATAAAGTCAGGAGGCTCGT 59.432 45.455 8.69 6.08 0.00 4.18
153 154 3.190874 GACAATAAAGTCAGGAGGCTCG 58.809 50.000 8.69 0.00 38.40 5.03
154 155 4.207891 TGACAATAAAGTCAGGAGGCTC 57.792 45.455 5.78 5.78 43.18 4.70
162 163 4.814234 ACGAGCAAACTGACAATAAAGTCA 59.186 37.500 0.00 0.00 45.64 3.41
163 164 5.344207 ACGAGCAAACTGACAATAAAGTC 57.656 39.130 0.00 0.00 38.99 3.01
164 165 6.145696 GTCTACGAGCAAACTGACAATAAAGT 59.854 38.462 0.00 0.00 0.00 2.66
165 166 6.526222 GTCTACGAGCAAACTGACAATAAAG 58.474 40.000 0.00 0.00 0.00 1.85
166 167 5.118050 CGTCTACGAGCAAACTGACAATAAA 59.882 40.000 0.00 0.00 43.02 1.40
167 168 4.619760 CGTCTACGAGCAAACTGACAATAA 59.380 41.667 0.00 0.00 43.02 1.40
168 169 4.083164 TCGTCTACGAGCAAACTGACAATA 60.083 41.667 0.14 0.00 44.22 1.90
169 170 2.987149 CGTCTACGAGCAAACTGACAAT 59.013 45.455 0.00 0.00 43.02 2.71
170 171 2.033675 TCGTCTACGAGCAAACTGACAA 59.966 45.455 0.14 0.00 44.22 3.18
171 172 1.605232 TCGTCTACGAGCAAACTGACA 59.395 47.619 0.14 0.00 44.22 3.58
172 173 2.327081 TCGTCTACGAGCAAACTGAC 57.673 50.000 0.14 0.00 44.22 3.51
183 184 4.153986 AGAACACGTTTACATCGTCTACG 58.846 43.478 0.00 0.00 39.55 3.51
184 185 7.695618 AGATTAGAACACGTTTACATCGTCTAC 59.304 37.037 0.00 0.00 39.55 2.59
185 186 7.755591 AGATTAGAACACGTTTACATCGTCTA 58.244 34.615 0.00 0.00 39.55 2.59
186 187 6.618811 AGATTAGAACACGTTTACATCGTCT 58.381 36.000 0.00 0.00 39.55 4.18
187 188 6.866179 AGATTAGAACACGTTTACATCGTC 57.134 37.500 0.00 0.00 39.55 4.20
188 189 8.922058 ATTAGATTAGAACACGTTTACATCGT 57.078 30.769 0.00 0.00 42.33 3.73
195 196 9.801714 CACGTTTTATTAGATTAGAACACGTTT 57.198 29.630 0.00 0.00 35.10 3.60
196 197 8.981647 ACACGTTTTATTAGATTAGAACACGTT 58.018 29.630 0.00 0.00 35.10 3.99
197 198 8.524870 ACACGTTTTATTAGATTAGAACACGT 57.475 30.769 0.00 0.00 37.62 4.49
198 199 9.456797 GAACACGTTTTATTAGATTAGAACACG 57.543 33.333 0.00 0.00 0.00 4.49
217 218 9.310716 GGTTAGCTTTATTAGATTAGAACACGT 57.689 33.333 0.00 0.00 0.00 4.49
218 219 9.309516 TGGTTAGCTTTATTAGATTAGAACACG 57.690 33.333 0.00 0.00 0.00 4.49
225 226 9.231297 GCCATCATGGTTAGCTTTATTAGATTA 57.769 33.333 5.31 0.00 40.46 1.75
226 227 7.177392 GGCCATCATGGTTAGCTTTATTAGATT 59.823 37.037 5.31 0.00 40.46 2.40
227 228 6.660949 GGCCATCATGGTTAGCTTTATTAGAT 59.339 38.462 5.31 0.00 40.46 1.98
228 229 6.003950 GGCCATCATGGTTAGCTTTATTAGA 58.996 40.000 5.31 0.00 40.46 2.10
229 230 6.006449 AGGCCATCATGGTTAGCTTTATTAG 58.994 40.000 5.01 0.00 40.46 1.73
230 231 5.952387 AGGCCATCATGGTTAGCTTTATTA 58.048 37.500 5.01 0.00 40.46 0.98
231 232 4.808042 AGGCCATCATGGTTAGCTTTATT 58.192 39.130 5.01 0.00 40.46 1.40
232 233 4.459852 AGGCCATCATGGTTAGCTTTAT 57.540 40.909 5.01 0.00 40.46 1.40
233 234 3.951563 AGGCCATCATGGTTAGCTTTA 57.048 42.857 5.01 0.00 40.46 1.85
234 235 2.834638 AGGCCATCATGGTTAGCTTT 57.165 45.000 5.01 0.00 40.46 3.51
235 236 2.834638 AAGGCCATCATGGTTAGCTT 57.165 45.000 5.01 0.00 40.46 3.74
236 237 2.834638 AAAGGCCATCATGGTTAGCT 57.165 45.000 5.01 0.00 40.46 3.32
237 238 3.448660 AGAAAAAGGCCATCATGGTTAGC 59.551 43.478 5.01 0.00 40.46 3.09
238 239 6.773976 TTAGAAAAAGGCCATCATGGTTAG 57.226 37.500 5.01 0.00 40.46 2.34
239 240 7.546250 TTTTAGAAAAAGGCCATCATGGTTA 57.454 32.000 5.01 0.00 40.46 2.85
240 241 6.432403 TTTTAGAAAAAGGCCATCATGGTT 57.568 33.333 5.01 0.00 40.46 3.67
241 242 6.432403 TTTTTAGAAAAAGGCCATCATGGT 57.568 33.333 5.01 0.00 34.99 3.55
275 276 0.457509 CCTTTTTGTGTGTGTGCGCA 60.458 50.000 5.66 5.66 0.00 6.09
276 277 1.145162 CCCTTTTTGTGTGTGTGCGC 61.145 55.000 0.00 0.00 0.00 6.09
277 278 0.172352 ACCCTTTTTGTGTGTGTGCG 59.828 50.000 0.00 0.00 0.00 5.34
278 279 2.164624 TGTACCCTTTTTGTGTGTGTGC 59.835 45.455 0.00 0.00 0.00 4.57
279 280 3.191581 TGTGTACCCTTTTTGTGTGTGTG 59.808 43.478 0.00 0.00 0.00 3.82
280 281 3.191791 GTGTGTACCCTTTTTGTGTGTGT 59.808 43.478 0.00 0.00 0.00 3.72
281 282 3.428316 GGTGTGTACCCTTTTTGTGTGTG 60.428 47.826 0.00 0.00 41.36 3.82
282 283 2.756207 GGTGTGTACCCTTTTTGTGTGT 59.244 45.455 0.00 0.00 41.36 3.72
283 284 3.430333 GGTGTGTACCCTTTTTGTGTG 57.570 47.619 0.00 0.00 41.36 3.82
294 295 2.735857 GTCGCGTGGGTGTGTACC 60.736 66.667 5.77 0.00 46.76 3.34
295 296 2.735857 GGTCGCGTGGGTGTGTAC 60.736 66.667 5.77 0.00 0.00 2.90
296 297 2.794028 TTGGTCGCGTGGGTGTGTA 61.794 57.895 5.77 0.00 0.00 2.90
297 298 4.164087 TTGGTCGCGTGGGTGTGT 62.164 61.111 5.77 0.00 0.00 3.72
298 299 3.645975 GTTGGTCGCGTGGGTGTG 61.646 66.667 5.77 0.00 0.00 3.82
299 300 3.802418 GAGTTGGTCGCGTGGGTGT 62.802 63.158 5.77 0.00 0.00 4.16
300 301 3.041940 GAGTTGGTCGCGTGGGTG 61.042 66.667 5.77 0.00 0.00 4.61
301 302 2.596553 TTTGAGTTGGTCGCGTGGGT 62.597 55.000 5.77 0.00 0.00 4.51
302 303 1.440938 TTTTGAGTTGGTCGCGTGGG 61.441 55.000 5.77 0.00 0.00 4.61
303 304 0.378962 TTTTTGAGTTGGTCGCGTGG 59.621 50.000 5.77 0.00 0.00 4.94
304 305 3.907927 TTTTTGAGTTGGTCGCGTG 57.092 47.368 5.77 0.00 0.00 5.34
320 321 6.133356 TGGGGTAGAACTGATGTTTCTTTTT 58.867 36.000 0.00 0.00 36.39 1.94
321 322 5.701224 TGGGGTAGAACTGATGTTTCTTTT 58.299 37.500 0.00 0.00 36.39 2.27
322 323 5.319043 TGGGGTAGAACTGATGTTTCTTT 57.681 39.130 0.00 0.00 36.39 2.52
323 324 4.993705 TGGGGTAGAACTGATGTTTCTT 57.006 40.909 0.00 0.00 36.39 2.52
324 325 4.536090 TCATGGGGTAGAACTGATGTTTCT 59.464 41.667 0.00 0.00 36.39 2.52
325 326 4.843728 TCATGGGGTAGAACTGATGTTTC 58.156 43.478 0.00 0.00 36.39 2.78
326 327 4.927267 TCATGGGGTAGAACTGATGTTT 57.073 40.909 0.00 0.00 36.39 2.83
327 328 4.474651 TGATCATGGGGTAGAACTGATGTT 59.525 41.667 0.00 0.00 39.42 2.71
328 329 4.040047 TGATCATGGGGTAGAACTGATGT 58.960 43.478 0.00 0.00 0.00 3.06
329 330 4.346127 TCTGATCATGGGGTAGAACTGATG 59.654 45.833 0.00 0.00 0.00 3.07
330 331 4.560739 TCTGATCATGGGGTAGAACTGAT 58.439 43.478 0.00 0.00 0.00 2.90
331 332 3.994317 TCTGATCATGGGGTAGAACTGA 58.006 45.455 0.00 0.00 0.00 3.41
332 333 4.760530 TTCTGATCATGGGGTAGAACTG 57.239 45.455 0.00 0.00 0.00 3.16
333 334 5.429762 TGAATTCTGATCATGGGGTAGAACT 59.570 40.000 7.05 0.00 31.00 3.01
334 335 5.684704 TGAATTCTGATCATGGGGTAGAAC 58.315 41.667 7.05 0.00 31.00 3.01
335 336 5.667172 TCTGAATTCTGATCATGGGGTAGAA 59.333 40.000 10.68 0.00 32.57 2.10
336 337 5.218959 TCTGAATTCTGATCATGGGGTAGA 58.781 41.667 10.68 0.00 0.00 2.59
337 338 5.557576 TCTGAATTCTGATCATGGGGTAG 57.442 43.478 10.68 0.00 0.00 3.18
338 339 5.191522 TGTTCTGAATTCTGATCATGGGGTA 59.808 40.000 17.38 0.00 0.00 3.69
339 340 4.018141 TGTTCTGAATTCTGATCATGGGGT 60.018 41.667 17.38 0.00 0.00 4.95
340 341 4.529897 TGTTCTGAATTCTGATCATGGGG 58.470 43.478 17.38 0.00 0.00 4.96
341 342 6.519679 TTTGTTCTGAATTCTGATCATGGG 57.480 37.500 20.30 0.00 0.00 4.00
342 343 6.034591 GCTTTGTTCTGAATTCTGATCATGG 58.965 40.000 20.30 17.02 0.00 3.66
343 344 6.617879 TGCTTTGTTCTGAATTCTGATCATG 58.382 36.000 20.30 17.31 0.00 3.07
344 345 6.829229 TGCTTTGTTCTGAATTCTGATCAT 57.171 33.333 20.30 0.00 0.00 2.45
345 346 6.829229 ATGCTTTGTTCTGAATTCTGATCA 57.171 33.333 17.38 17.38 0.00 2.92
346 347 6.750963 GGAATGCTTTGTTCTGAATTCTGATC 59.249 38.462 14.89 14.18 0.00 2.92
347 348 6.209986 TGGAATGCTTTGTTCTGAATTCTGAT 59.790 34.615 14.89 0.00 0.00 2.90
348 349 5.535783 TGGAATGCTTTGTTCTGAATTCTGA 59.464 36.000 10.68 10.68 0.00 3.27
349 350 5.632347 GTGGAATGCTTTGTTCTGAATTCTG 59.368 40.000 7.05 6.50 0.00 3.02
350 351 5.563475 CGTGGAATGCTTTGTTCTGAATTCT 60.563 40.000 7.05 0.00 0.00 2.40
351 352 4.618489 CGTGGAATGCTTTGTTCTGAATTC 59.382 41.667 0.00 0.00 0.00 2.17
352 353 4.037923 ACGTGGAATGCTTTGTTCTGAATT 59.962 37.500 0.00 0.00 0.00 2.17
353 354 3.569701 ACGTGGAATGCTTTGTTCTGAAT 59.430 39.130 0.00 0.00 0.00 2.57
354 355 2.948979 ACGTGGAATGCTTTGTTCTGAA 59.051 40.909 0.00 0.00 0.00 3.02
355 356 2.548057 GACGTGGAATGCTTTGTTCTGA 59.452 45.455 0.00 0.00 0.00 3.27
356 357 2.290367 TGACGTGGAATGCTTTGTTCTG 59.710 45.455 0.00 0.00 0.00 3.02
357 358 2.571212 TGACGTGGAATGCTTTGTTCT 58.429 42.857 0.00 0.00 0.00 3.01
358 359 3.347958 TTGACGTGGAATGCTTTGTTC 57.652 42.857 0.00 0.00 0.00 3.18
359 360 3.791973 TTTGACGTGGAATGCTTTGTT 57.208 38.095 0.00 0.00 0.00 2.83
360 361 3.791973 TTTTGACGTGGAATGCTTTGT 57.208 38.095 0.00 0.00 0.00 2.83
388 389 6.220201 GGCCAGAATACTTTTTGTTTTAGCA 58.780 36.000 0.00 0.00 0.00 3.49
390 391 6.014584 AGGGGCCAGAATACTTTTTGTTTTAG 60.015 38.462 4.39 0.00 0.00 1.85
403 404 1.686325 GAGCGTGAGGGGCCAGAATA 61.686 60.000 4.39 0.00 0.00 1.75
412 413 3.827898 GTCCCGAGAGCGTGAGGG 61.828 72.222 4.31 4.31 45.10 4.30
525 526 2.811542 TTTGTGGGCGGCATCGATCA 62.812 55.000 12.47 0.00 39.00 2.92
528 529 3.053291 GTTTGTGGGCGGCATCGA 61.053 61.111 12.47 0.00 39.00 3.59
529 530 4.459331 CGTTTGTGGGCGGCATCG 62.459 66.667 12.47 1.89 39.81 3.84
559 560 2.202053 ACGGAGGGGGTGTGTGTA 59.798 61.111 0.00 0.00 0.00 2.90
581 583 3.512516 GCGGAGTGGCAGGCATTC 61.513 66.667 10.76 10.76 0.00 2.67
635 637 3.061848 CGGGCTGCGGTGGATTTT 61.062 61.111 0.00 0.00 0.00 1.82
742 758 4.683334 GTCGTGCGTTGGGCTTGC 62.683 66.667 0.00 0.00 44.05 4.01
986 1012 2.998279 GCCATGGTGCCTGTGCTTC 61.998 63.158 14.67 0.00 38.71 3.86
1224 1267 4.742649 TCCGAGAGCGAGGCCAGT 62.743 66.667 5.01 0.00 40.82 4.00
1848 1918 1.605058 GGAGCTGCACCGTAGAGGAA 61.605 60.000 0.00 0.00 45.00 3.36
1915 1994 1.444553 GGTTGTCGTGGAGCTCGAG 60.445 63.158 8.45 8.45 37.99 4.04
2045 2124 1.026584 AACGTTTCCCAAAGTTCCGG 58.973 50.000 0.00 0.00 29.59 5.14
2047 2126 2.605818 GCAAAACGTTTCCCAAAGTTCC 59.394 45.455 15.01 0.00 33.96 3.62
2051 2139 3.516615 TGAAGCAAAACGTTTCCCAAAG 58.483 40.909 15.01 2.04 34.12 2.77
2055 2143 1.067060 AGCTGAAGCAAAACGTTTCCC 59.933 47.619 15.01 8.30 45.16 3.97
2100 2188 6.752351 GGACAACATGCTACCGATATACTATG 59.248 42.308 0.00 0.00 0.00 2.23
2107 2195 1.414919 GGGGACAACATGCTACCGATA 59.585 52.381 0.00 0.00 0.00 2.92
2108 2196 0.180406 GGGGACAACATGCTACCGAT 59.820 55.000 0.00 0.00 0.00 4.18
2110 2198 1.451387 GGGGGACAACATGCTACCG 60.451 63.158 0.00 0.00 0.00 4.02
2111 2199 1.451387 CGGGGGACAACATGCTACC 60.451 63.158 0.00 0.00 0.00 3.18
2114 2208 4.047125 CCCGGGGGACAACATGCT 62.047 66.667 14.71 0.00 37.50 3.79
2140 2234 3.357079 AGGCGAACGCAAAGGCTG 61.357 61.111 20.16 0.00 44.11 4.85
2141 2235 3.357079 CAGGCGAACGCAAAGGCT 61.357 61.111 20.16 5.42 44.11 4.58
2143 2237 2.855728 GATGCAGGCGAACGCAAAGG 62.856 60.000 20.16 7.69 42.37 3.11
2145 2239 0.672091 TAGATGCAGGCGAACGCAAA 60.672 50.000 20.16 3.55 42.37 3.68
2146 2240 0.461870 ATAGATGCAGGCGAACGCAA 60.462 50.000 20.16 3.89 42.37 4.85
2236 2330 1.486310 TCATTCCGTTCCATGGGAGAG 59.514 52.381 13.02 0.00 33.01 3.20
2237 2331 1.578897 TCATTCCGTTCCATGGGAGA 58.421 50.000 13.02 0.00 33.01 3.71
2261 2355 1.014352 AACAAGAATATGCGGCGTCC 58.986 50.000 9.37 0.00 0.00 4.79
2270 2364 7.542130 GTGGAATTTTGCGAGAAACAAGAATAT 59.458 33.333 0.00 0.00 0.00 1.28
2284 2378 0.732538 GAAGGGCGTGGAATTTTGCG 60.733 55.000 0.00 0.00 0.00 4.85
2372 2466 2.108075 TGATCTCTTTCTTGGCAACCCA 59.892 45.455 0.00 0.00 40.06 4.51
2507 2607 1.412387 ACGTTACCGTCTCGCTTTTC 58.588 50.000 0.00 0.00 46.28 2.29
2549 2649 2.481568 GTGTGGTTCGGTTAGGTTAAGC 59.518 50.000 0.00 0.00 0.00 3.09
2551 2651 3.118482 TGTGTGTGGTTCGGTTAGGTTAA 60.118 43.478 0.00 0.00 0.00 2.01
2552 2652 2.433604 TGTGTGTGGTTCGGTTAGGTTA 59.566 45.455 0.00 0.00 0.00 2.85
2553 2653 1.209990 TGTGTGTGGTTCGGTTAGGTT 59.790 47.619 0.00 0.00 0.00 3.50
2554 2654 0.831966 TGTGTGTGGTTCGGTTAGGT 59.168 50.000 0.00 0.00 0.00 3.08
2555 2655 1.871039 CTTGTGTGTGGTTCGGTTAGG 59.129 52.381 0.00 0.00 0.00 2.69
2556 2656 2.542595 GACTTGTGTGTGGTTCGGTTAG 59.457 50.000 0.00 0.00 0.00 2.34
2604 2704 0.667792 GGCTTTCTCGTGCGAGTTCT 60.668 55.000 19.20 0.00 42.49 3.01
2640 2744 2.281761 CAGAGTTTGGCACGCCCT 60.282 61.111 5.42 0.00 34.56 5.19
2806 2915 1.153568 CACCGCACCGACTCATCAT 60.154 57.895 0.00 0.00 0.00 2.45
2807 2916 2.261361 CACCGCACCGACTCATCA 59.739 61.111 0.00 0.00 0.00 3.07
2898 3021 3.658757 TGGTATTTTTGCCAAGCTGAC 57.341 42.857 0.00 0.00 0.00 3.51
2916 3039 3.422303 CCGTGACACCGCACATGG 61.422 66.667 0.00 0.00 38.69 3.66
2925 3048 3.575351 AAGCTCGGCTCCGTGACAC 62.575 63.158 13.73 0.00 38.25 3.67
2937 3060 0.038159 AGACGGGTTTGAGAAGCTCG 60.038 55.000 0.00 0.00 34.98 5.03
2938 3061 1.673329 GGAGACGGGTTTGAGAAGCTC 60.673 57.143 0.00 0.00 33.81 4.09
2939 3062 0.321996 GGAGACGGGTTTGAGAAGCT 59.678 55.000 0.00 0.00 33.81 3.74
2940 3063 0.321996 AGGAGACGGGTTTGAGAAGC 59.678 55.000 0.00 0.00 0.00 3.86
2941 3064 1.402984 CGAGGAGACGGGTTTGAGAAG 60.403 57.143 0.00 0.00 0.00 2.85
2942 3065 0.601558 CGAGGAGACGGGTTTGAGAA 59.398 55.000 0.00 0.00 0.00 2.87
2943 3066 0.251033 TCGAGGAGACGGGTTTGAGA 60.251 55.000 0.00 0.00 0.00 3.27
2945 3068 0.316204 GTTCGAGGAGACGGGTTTGA 59.684 55.000 0.00 0.00 0.00 2.69
2947 3070 1.288127 CGTTCGAGGAGACGGGTTT 59.712 57.895 0.00 0.00 0.00 3.27
2949 3072 2.282040 ACGTTCGAGGAGACGGGT 60.282 61.111 11.63 0.00 0.00 5.28
2951 3074 2.330372 TGGACGTTCGAGGAGACGG 61.330 63.158 11.63 0.00 0.00 4.79
2953 3076 1.446907 TAGTGGACGTTCGAGGAGAC 58.553 55.000 0.00 0.00 0.00 3.36
2954 3077 2.414994 ATAGTGGACGTTCGAGGAGA 57.585 50.000 0.00 0.00 0.00 3.71
2955 3078 3.564644 ACATATAGTGGACGTTCGAGGAG 59.435 47.826 0.00 0.00 0.00 3.69
2956 3079 3.548770 ACATATAGTGGACGTTCGAGGA 58.451 45.455 0.00 0.00 0.00 3.71
2957 3080 3.606384 CGACATATAGTGGACGTTCGAGG 60.606 52.174 0.00 0.00 0.00 4.63
2958 3081 3.002042 ACGACATATAGTGGACGTTCGAG 59.998 47.826 6.02 0.00 40.16 4.04
2959 3082 2.938451 ACGACATATAGTGGACGTTCGA 59.062 45.455 6.02 0.00 40.16 3.71
2960 3083 3.033873 CACGACATATAGTGGACGTTCG 58.966 50.000 0.00 0.00 40.74 3.95
2961 3084 2.787680 GCACGACATATAGTGGACGTTC 59.212 50.000 0.00 0.00 40.74 3.95
2962 3085 2.793585 CGCACGACATATAGTGGACGTT 60.794 50.000 0.00 0.00 40.74 3.99
2963 3086 1.268386 CGCACGACATATAGTGGACGT 60.268 52.381 0.00 0.00 42.36 4.34
2964 3087 1.395670 CGCACGACATATAGTGGACG 58.604 55.000 0.00 0.00 38.68 4.79
2965 3088 1.335810 TCCGCACGACATATAGTGGAC 59.664 52.381 0.00 0.00 38.68 4.02
2983 3106 1.134560 GACTGATCACGTACCCTGTCC 59.865 57.143 0.00 0.00 0.00 4.02
3005 3131 3.247648 AGTCCGTTTGAGTCACGATTTTG 59.752 43.478 4.81 0.00 40.20 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.