Multiple sequence alignment - TraesCS2B01G423500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G423500 chr2B 100.000 6237 0 0 1 6237 608946939 608940703 0.000000e+00 11518.0
1 TraesCS2B01G423500 chr2B 98.095 315 6 0 5693 6007 158001132 158000818 3.290000e-152 549.0
2 TraesCS2B01G423500 chr2B 96.904 323 10 0 5692 6014 237641435 237641757 5.500000e-150 542.0
3 TraesCS2B01G423500 chr2B 93.191 235 12 4 6005 6237 193570810 193570578 5.990000e-90 342.0
4 TraesCS2B01G423500 chr2B 97.436 39 1 0 5655 5693 23908794 23908832 4.040000e-07 67.6
5 TraesCS2B01G423500 chr2B 97.436 39 1 0 5655 5693 237641434 237641472 4.040000e-07 67.6
6 TraesCS2B01G423500 chr2D 91.106 3969 171 49 1 3882 517096980 517093107 0.000000e+00 5206.0
7 TraesCS2B01G423500 chr2D 93.719 1210 70 4 3866 5070 517091584 517090376 0.000000e+00 1808.0
8 TraesCS2B01G423500 chr2D 89.942 517 40 4 5129 5645 517083945 517083441 0.000000e+00 656.0
9 TraesCS2B01G423500 chr2D 91.845 233 17 1 6005 6237 640983045 640983275 2.170000e-84 324.0
10 TraesCS2B01G423500 chr2D 86.219 283 33 3 5070 5351 517090322 517090045 1.020000e-77 302.0
11 TraesCS2B01G423500 chr2D 89.474 133 8 1 4945 5071 517084343 517084211 5.000000e-36 163.0
12 TraesCS2B01G423500 chr2A 89.380 2985 151 60 49 2988 661456845 661453982 0.000000e+00 3603.0
13 TraesCS2B01G423500 chr2A 90.472 2120 144 26 2980 5071 661453816 661451727 0.000000e+00 2743.0
14 TraesCS2B01G423500 chr2A 87.086 604 56 12 5070 5657 661451674 661451077 0.000000e+00 664.0
15 TraesCS2B01G423500 chr2A 97.436 39 1 0 5655 5693 572799881 572799919 4.040000e-07 67.6
16 TraesCS2B01G423500 chr5B 90.283 566 33 9 5692 6237 474767894 474767331 0.000000e+00 721.0
17 TraesCS2B01G423500 chr5B 96.855 318 9 1 5693 6009 280606837 280607154 1.190000e-146 531.0
18 TraesCS2B01G423500 chr5B 92.308 234 17 1 6005 6237 75336545 75336778 1.300000e-86 331.0
19 TraesCS2B01G423500 chr5B 91.880 234 18 1 6005 6237 75741333 75741566 6.030000e-85 326.0
20 TraesCS2B01G423500 chr3B 88.127 598 43 11 5660 6237 96073071 96072482 0.000000e+00 686.0
21 TraesCS2B01G423500 chr3A 98.754 321 3 1 5692 6011 562913262 562912942 2.520000e-158 569.0
22 TraesCS2B01G423500 chr6B 98.726 314 4 0 5692 6005 547005916 547006229 5.460000e-155 558.0
23 TraesCS2B01G423500 chr6B 94.444 234 11 2 6005 6237 136158761 136158529 5.940000e-95 359.0
24 TraesCS2B01G423500 chr6B 97.436 39 1 0 5655 5693 547005915 547005953 4.040000e-07 67.6
25 TraesCS2B01G423500 chr1B 97.476 317 8 0 5689 6005 424901956 424902272 5.500000e-150 542.0
26 TraesCS2B01G423500 chr1B 94.017 234 12 2 6005 6237 23246245 23246477 2.770000e-93 353.0
27 TraesCS2B01G423500 chr4B 96.541 318 10 1 5692 6009 599808040 599807724 5.540000e-145 525.0
28 TraesCS2B01G423500 chr4B 97.436 39 1 0 5655 5693 599808041 599808003 4.040000e-07 67.6
29 TraesCS2B01G423500 chr4B 100.000 34 0 0 5660 5693 129713327 129713294 5.220000e-06 63.9
30 TraesCS2B01G423500 chr7B 93.162 234 14 2 6005 6237 745278537 745278769 5.990000e-90 342.0
31 TraesCS2B01G423500 chr5A 97.436 39 1 0 5655 5693 521390089 521390127 4.040000e-07 67.6
32 TraesCS2B01G423500 chr5A 97.297 37 1 0 5657 5693 630124183 630124147 5.220000e-06 63.9
33 TraesCS2B01G423500 chr4A 90.000 50 2 2 5645 5693 247671166 247671119 1.880000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G423500 chr2B 608940703 608946939 6236 True 11518.000000 11518 100.000000 1 6237 1 chr2B.!!$R3 6236
1 TraesCS2B01G423500 chr2D 517090045 517096980 6935 True 2438.666667 5206 90.348000 1 5351 3 chr2D.!!$R2 5350
2 TraesCS2B01G423500 chr2D 517083441 517084343 902 True 409.500000 656 89.708000 4945 5645 2 chr2D.!!$R1 700
3 TraesCS2B01G423500 chr2A 661451077 661456845 5768 True 2336.666667 3603 88.979333 49 5657 3 chr2A.!!$R1 5608
4 TraesCS2B01G423500 chr5B 474767331 474767894 563 True 721.000000 721 90.283000 5692 6237 1 chr5B.!!$R1 545
5 TraesCS2B01G423500 chr3B 96072482 96073071 589 True 686.000000 686 88.127000 5660 6237 1 chr3B.!!$R1 577

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
66 71 0.174845 TTTGGGACGAGCGTATCCAG 59.825 55.000 14.19 0.00 36.65 3.86 F
1932 2023 1.000052 TCGTTCGGTGCTGTCAATACA 60.000 47.619 0.00 0.00 0.00 2.29 F
2594 2686 1.010419 CAGGCTGCAATTTTGTCGCC 61.010 55.000 0.00 13.56 42.17 5.54 F
4259 6099 0.179124 GCCTCAACTACGAGCCTCAG 60.179 60.000 0.00 0.00 0.00 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1948 2039 0.037605 ACATTCCTCCGGTTGTCGAC 60.038 55.0 9.11 9.11 42.43 4.20 R
3038 3305 0.680618 CCATGGTTTCTTGCAAGCCA 59.319 50.0 21.99 21.87 0.00 4.75 R
4284 6124 0.032678 ATCACTGGAGCGCCTATTCG 59.967 55.0 8.34 0.00 34.31 3.34 R
5681 7759 0.031414 ACAGGCCCTATAAGTCGGGT 60.031 55.0 0.00 0.00 42.67 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.447314 GTGGCCTTACTTCCCGTCG 60.447 63.158 3.32 0.00 0.00 5.12
42 43 1.538276 CCGTCGCAAATTCAATGCTC 58.462 50.000 0.00 0.00 41.64 4.26
47 52 1.131126 CGCAAATTCAATGCTCGTCCT 59.869 47.619 0.00 0.00 41.64 3.85
66 71 0.174845 TTTGGGACGAGCGTATCCAG 59.825 55.000 14.19 0.00 36.65 3.86
69 74 2.027751 GACGAGCGTATCCAGGCC 59.972 66.667 0.00 0.00 36.16 5.19
87 95 1.603172 GCCGCACTCGTAGATAAGCAT 60.603 52.381 0.00 0.00 33.89 3.79
88 96 2.320367 CCGCACTCGTAGATAAGCATC 58.680 52.381 0.00 0.00 33.89 3.91
89 97 1.972640 CGCACTCGTAGATAAGCATCG 59.027 52.381 0.00 0.00 36.20 3.84
123 131 1.606668 TGCCTCAAAGCTTAACCGTTG 59.393 47.619 0.00 0.00 0.00 4.10
136 144 5.005779 GCTTAACCGTTGACAGATCATAGTG 59.994 44.000 0.00 0.00 33.85 2.74
137 145 4.537135 AACCGTTGACAGATCATAGTGT 57.463 40.909 0.00 0.00 33.85 3.55
143 151 3.800531 TGACAGATCATAGTGTGCATGG 58.199 45.455 0.00 0.00 0.00 3.66
243 253 4.012811 AGAGCAGAGCAGCGGCAA 62.013 61.111 12.44 0.00 44.61 4.52
378 396 2.021793 CATGCGTCCGTCAATGCG 59.978 61.111 0.00 0.00 33.73 4.73
400 418 4.916273 ACGCGCCAACAAAACCGC 62.916 61.111 5.73 0.00 42.71 5.68
622 664 4.309950 ACTTCCGTCCACGCCCAC 62.310 66.667 0.00 0.00 38.18 4.61
738 784 1.751162 CTCTCCGCGGAGACCTTCT 60.751 63.158 45.69 0.00 45.26 2.85
739 785 1.720694 CTCTCCGCGGAGACCTTCTC 61.721 65.000 45.69 0.00 45.26 2.87
740 786 1.751162 CTCCGCGGAGACCTTCTCT 60.751 63.158 45.28 0.00 42.95 3.10
744 790 4.026300 CGGAGACCTTCTCTGCCT 57.974 61.111 3.30 0.00 42.32 4.75
745 791 1.515020 CGGAGACCTTCTCTGCCTG 59.485 63.158 3.30 0.00 42.32 4.85
824 893 1.338020 CCTTCTGCTTGTTGTTCCCAC 59.662 52.381 0.00 0.00 0.00 4.61
827 896 2.335011 GCTTGTTGTTCCCACCGC 59.665 61.111 0.00 0.00 0.00 5.68
858 927 4.210304 GTCGCCATTGTCGCTCGC 62.210 66.667 0.00 0.00 0.00 5.03
859 928 4.435436 TCGCCATTGTCGCTCGCT 62.435 61.111 0.00 0.00 0.00 4.93
860 929 3.490759 CGCCATTGTCGCTCGCTT 61.491 61.111 0.00 0.00 0.00 4.68
861 930 2.099062 GCCATTGTCGCTCGCTTG 59.901 61.111 0.00 0.00 0.00 4.01
925 994 2.253758 CCATAATGCGGGGCGAGTG 61.254 63.158 0.00 0.00 0.00 3.51
1138 1223 1.892862 CTCGCCGGATCCTACGAGT 60.893 63.158 30.49 0.00 45.21 4.18
1169 1254 3.005539 GCTGCACCTCCTCCTCCA 61.006 66.667 0.00 0.00 0.00 3.86
1178 1263 2.235602 CTCCTCCTCCAGCTCCAGGA 62.236 65.000 9.44 9.44 37.27 3.86
1541 1629 3.127533 GGCTTTCGATGCGGCAGT 61.128 61.111 9.25 0.00 0.00 4.40
1932 2023 1.000052 TCGTTCGGTGCTGTCAATACA 60.000 47.619 0.00 0.00 0.00 2.29
1943 2034 1.134220 TGTCAATACAATCCCGGAGGC 60.134 52.381 0.73 0.00 38.73 4.70
1944 2035 4.687158 TGTCAATACAATCCCGGAGGCG 62.687 54.545 0.73 0.00 38.73 5.52
2447 2538 6.356186 AGGTCAAGGTAAACTCGTATTTCT 57.644 37.500 0.00 0.00 0.00 2.52
2476 2567 6.291377 AGCACTTTTCTGTGAGTAGAAATGA 58.709 36.000 16.21 0.00 43.84 2.57
2487 2578 6.148948 GTGAGTAGAAATGATCTCCGATCTG 58.851 44.000 5.55 0.00 39.71 2.90
2594 2686 1.010419 CAGGCTGCAATTTTGTCGCC 61.010 55.000 0.00 13.56 42.17 5.54
2677 2769 6.653320 TGAATTAAGGTTTACTAGCTGTGGTG 59.347 38.462 0.00 0.00 34.09 4.17
2701 2793 6.070767 TGTTCTGGATCTTTAGGTAGACCTTG 60.071 42.308 6.52 0.00 46.09 3.61
2741 2833 6.442112 CCTTTTTGTTTGAACCAAAAGCAAA 58.558 32.000 19.66 8.26 44.14 3.68
2767 2859 2.684927 GCTGAATAATGGAGTGGGCACT 60.685 50.000 0.00 0.00 45.84 4.40
2826 2919 7.154656 GGGAAGATTTATGTCAAGCAAAAGTT 58.845 34.615 0.00 0.00 0.00 2.66
3038 3305 6.158695 TGGGAAGTATCTTTCTCAAAGCCTAT 59.841 38.462 0.00 0.00 34.72 2.57
3039 3306 6.484977 GGGAAGTATCTTTCTCAAAGCCTATG 59.515 42.308 0.00 0.00 38.39 2.23
3052 3335 2.284263 GCCTATGGCTTGCAAGAAAC 57.716 50.000 30.39 18.23 46.69 2.78
3061 3344 1.068895 CTTGCAAGAAACCATGGTGCA 59.931 47.619 22.31 20.17 43.12 4.57
3069 3352 1.122227 AACCATGGTGCAGTTGCTTT 58.878 45.000 20.60 0.00 42.66 3.51
3211 3498 5.109210 AGCTTCAAACTTTGTTAACAAGGC 58.891 37.500 25.42 13.62 36.54 4.35
3223 3510 4.393680 TGTTAACAAGGCCATCGTATCAAC 59.606 41.667 5.01 5.15 0.00 3.18
3281 3568 6.861572 GCCACTTTATTGGAACTACTTTTGTC 59.138 38.462 0.00 0.00 39.24 3.18
3313 3600 4.699925 GGGTAGTGTCCCATATGCTTTA 57.300 45.455 0.00 0.00 46.30 1.85
3343 3630 3.997021 GGATTAGTGTCCCATATGCTTCG 59.003 47.826 0.00 0.00 31.82 3.79
3386 3687 7.785028 TCCATAGGTCATGTCTATACATATCCC 59.215 40.741 9.72 3.87 44.70 3.85
3408 3709 8.209802 TCCCACTTAACAGTATTTCTCCTTTA 57.790 34.615 0.00 0.00 0.00 1.85
3679 3980 6.043411 CGTCTCCTTTTAAACTGGAGGATAG 58.957 44.000 24.72 15.20 45.36 2.08
3690 3991 5.799827 ACTGGAGGATAGTTGCTCTAATC 57.200 43.478 0.00 0.00 40.03 1.75
3719 4020 6.919662 TCATTGTGTTTTCTGATTTCTTGCTC 59.080 34.615 0.00 0.00 0.00 4.26
3735 4036 6.219417 TCTTGCTCCAAAATGTTCTTTTCA 57.781 33.333 0.00 0.00 0.00 2.69
3789 4090 5.952526 TTCATCTTATGCACTGCCATATG 57.047 39.130 0.00 0.00 0.00 1.78
3790 4091 3.754850 TCATCTTATGCACTGCCATATGC 59.245 43.478 0.00 0.00 42.40 3.14
3819 4120 6.839124 ATGGAGCACACATTTGAATCTAAA 57.161 33.333 0.00 0.00 0.00 1.85
3822 4123 6.489700 TGGAGCACACATTTGAATCTAAAGAA 59.510 34.615 0.00 0.00 0.00 2.52
3824 4125 6.917533 AGCACACATTTGAATCTAAAGAAGG 58.082 36.000 0.00 0.00 0.00 3.46
3829 4130 9.525826 ACACATTTGAATCTAAAGAAGGAATCT 57.474 29.630 0.00 0.00 41.32 2.40
3863 4164 6.992063 TCTAGAATTGTTCCAAGAATCTGC 57.008 37.500 0.00 0.00 0.00 4.26
3892 5732 7.646314 ACTCTTGCATAATCTGTATTGCATTC 58.354 34.615 0.00 0.00 43.91 2.67
3962 5802 7.528307 TCTAACATACGTTCTCTCTGAAGTTC 58.472 38.462 0.00 0.00 36.52 3.01
3976 5816 9.950680 CTCTCTGAAGTTCTATCTATTTCTCAC 57.049 37.037 4.17 0.00 0.00 3.51
3984 5824 7.782644 AGTTCTATCTATTTCTCACTAGGTGCT 59.217 37.037 0.00 0.00 32.98 4.40
4014 5854 7.604164 TGATTCTAACAAACTGATCACCTCTTC 59.396 37.037 0.00 0.00 0.00 2.87
4067 5907 5.360144 GCTACACTCCTACCAGATTCAGTTA 59.640 44.000 0.00 0.00 0.00 2.24
4103 5943 1.515081 CGAAAAACCTGGCTTCGGTA 58.485 50.000 14.82 0.00 38.57 4.02
4131 5971 2.396157 GGAACCAACGGCCGTGATC 61.396 63.158 34.95 25.05 0.00 2.92
4142 5982 2.699073 CCGTGATCTGGCAATGGAG 58.301 57.895 0.00 0.00 0.00 3.86
4253 6093 1.734047 GCACTCTGCCTCAACTACGAG 60.734 57.143 0.00 0.00 37.42 4.18
4259 6099 0.179124 GCCTCAACTACGAGCCTCAG 60.179 60.000 0.00 0.00 0.00 3.35
4280 6120 3.391382 GCACCCACCTACTCGCCT 61.391 66.667 0.00 0.00 0.00 5.52
4281 6121 2.056223 GCACCCACCTACTCGCCTA 61.056 63.158 0.00 0.00 0.00 3.93
4284 6124 2.499827 CCCACCTACTCGCCTAGGC 61.500 68.421 24.75 24.75 37.41 3.93
4340 6180 3.028850 CAAATGGTCTCAAGCCATGGAT 58.971 45.455 18.40 6.18 45.21 3.41
4376 6216 0.672889 ATGTGGTCAACGCAATGCAA 59.327 45.000 5.91 0.00 43.88 4.08
4388 6228 1.250328 CAATGCAAGCCCTTGTCTCA 58.750 50.000 9.53 0.53 42.31 3.27
4421 6261 0.396974 TGTGGGAGCAGCAAAACCTT 60.397 50.000 0.00 0.00 0.00 3.50
4438 6278 3.077359 ACCTTGATCAAAGCGAAAGGAG 58.923 45.455 13.15 0.00 39.88 3.69
4469 6309 2.761208 TCGAGAAAGGGAGAAGTGGATC 59.239 50.000 0.00 0.00 0.00 3.36
4482 6322 2.996631 AGTGGATCAAGATGTTGGAGC 58.003 47.619 2.33 0.00 34.09 4.70
4520 6360 0.963962 ACAAGGAAGCCGACGAGTTA 59.036 50.000 0.00 0.00 0.00 2.24
4574 6414 0.468226 AGAGTTTTCAGCGGTGTCCA 59.532 50.000 15.22 0.00 0.00 4.02
4600 6440 1.515519 GAACGTACGAGGCGCATCA 60.516 57.895 24.41 0.00 0.00 3.07
4604 6444 1.000607 ACGTACGAGGCGCATCATATT 60.001 47.619 24.41 5.32 0.00 1.28
4745 6585 1.356738 TCAAGAGGGAGTTCGAGGGTA 59.643 52.381 0.00 0.00 0.00 3.69
4763 6603 2.821969 GGTACCACGGTGACTAAGAGAA 59.178 50.000 10.28 0.00 0.00 2.87
4764 6604 3.119566 GGTACCACGGTGACTAAGAGAAG 60.120 52.174 10.28 0.00 0.00 2.85
4766 6606 2.963782 ACCACGGTGACTAAGAGAAGTT 59.036 45.455 10.28 0.00 0.00 2.66
4799 6641 2.040278 TCCAGCTTGTAAGATGTTGCCT 59.960 45.455 8.81 0.00 40.66 4.75
4829 6672 3.490419 GCAATCTGTGGATTTGGATGAGC 60.490 47.826 0.00 0.00 39.87 4.26
4834 6677 2.019984 GTGGATTTGGATGAGCAGTCC 58.980 52.381 0.00 0.00 36.26 3.85
4943 6790 1.225376 TGAAGCGTTTGTGGGCTACG 61.225 55.000 0.00 0.00 38.88 3.51
5071 6924 2.835701 GATGTCAACGCCTCCTCGCA 62.836 60.000 0.00 0.00 0.00 5.10
5073 6926 4.742201 TCAACGCCTCCTCGCAGC 62.742 66.667 0.00 0.00 0.00 5.25
5078 6931 4.479993 GCCTCCTCGCAGCATGGT 62.480 66.667 0.00 0.00 35.86 3.55
5079 6932 2.513204 CCTCCTCGCAGCATGGTG 60.513 66.667 20.52 20.52 35.86 4.17
5170 7233 2.830321 TGCAGAAGATCAGAGAGCTTGA 59.170 45.455 1.88 0.00 38.45 3.02
5195 7258 1.385038 GCGTTGTGTCGTTGACAATG 58.615 50.000 0.49 0.59 44.49 2.82
5231 7294 2.121291 TGGGCAAAGCGATAATGACA 57.879 45.000 0.00 0.00 0.00 3.58
5316 7379 1.455248 AGTGACGAGTCTAGTGCTCC 58.545 55.000 4.78 1.25 0.00 4.70
5354 7421 5.493133 TGTGTTAGTCGTTTTCAATTGCT 57.507 34.783 0.00 0.00 0.00 3.91
5377 7444 3.758300 CACACGCATATTTGGGAACTTC 58.242 45.455 7.21 0.00 39.03 3.01
5498 7566 4.896482 AGGGAACGAATCTAAGCTGATAGT 59.104 41.667 0.00 0.00 0.00 2.12
5499 7567 6.069331 AGGGAACGAATCTAAGCTGATAGTA 58.931 40.000 0.00 0.00 0.00 1.82
5513 7585 4.208047 GCTGATAGTAGATCTGTGTTTGCG 59.792 45.833 5.18 0.00 0.00 4.85
5524 7596 5.142061 TCTGTGTTTGCGGATCTAAAGTA 57.858 39.130 0.00 0.00 0.00 2.24
5529 7601 4.927425 TGTTTGCGGATCTAAAGTACTGAC 59.073 41.667 0.00 0.00 0.00 3.51
5567 7639 2.767505 ACGAGTTTCAGTTGGTGATCC 58.232 47.619 0.00 0.00 34.17 3.36
5569 7641 2.738846 CGAGTTTCAGTTGGTGATCCAG 59.261 50.000 0.00 0.00 45.22 3.86
5605 7677 3.493830 GATCGTGGTGGCGGCGATA 62.494 63.158 12.98 0.00 44.06 2.92
5635 7707 6.073711 TCGATGTAGAGATACGATGTGTTCTC 60.074 42.308 0.00 0.00 36.14 2.87
5663 7741 6.808008 TTTTTCTTCTGTCATTAGAGCCTG 57.192 37.500 0.00 0.00 0.00 4.85
5664 7742 5.489792 TTTCTTCTGTCATTAGAGCCTGT 57.510 39.130 0.00 0.00 0.00 4.00
5665 7743 5.489792 TTCTTCTGTCATTAGAGCCTGTT 57.510 39.130 0.00 0.00 0.00 3.16
5666 7744 5.489792 TCTTCTGTCATTAGAGCCTGTTT 57.510 39.130 0.00 0.00 0.00 2.83
5667 7745 5.240891 TCTTCTGTCATTAGAGCCTGTTTG 58.759 41.667 0.00 0.00 0.00 2.93
5668 7746 3.942829 TCTGTCATTAGAGCCTGTTTGG 58.057 45.455 0.00 0.00 39.35 3.28
5669 7747 3.327757 TCTGTCATTAGAGCCTGTTTGGT 59.672 43.478 0.00 0.00 38.35 3.67
5670 7748 4.074970 CTGTCATTAGAGCCTGTTTGGTT 58.925 43.478 0.00 0.00 38.35 3.67
5671 7749 4.072131 TGTCATTAGAGCCTGTTTGGTTC 58.928 43.478 0.00 0.00 45.13 3.62
5672 7750 3.440522 GTCATTAGAGCCTGTTTGGTTCC 59.559 47.826 0.00 0.00 45.82 3.62
5673 7751 3.073798 TCATTAGAGCCTGTTTGGTTCCA 59.926 43.478 0.00 0.00 45.82 3.53
5674 7752 3.586470 TTAGAGCCTGTTTGGTTCCAA 57.414 42.857 0.00 0.00 45.82 3.53
5675 7753 2.683211 AGAGCCTGTTTGGTTCCAAT 57.317 45.000 5.06 0.00 45.82 3.16
5676 7754 3.806949 AGAGCCTGTTTGGTTCCAATA 57.193 42.857 5.06 0.00 45.82 1.90
5677 7755 4.112634 AGAGCCTGTTTGGTTCCAATAA 57.887 40.909 5.06 0.00 45.82 1.40
5678 7756 4.082125 AGAGCCTGTTTGGTTCCAATAAG 58.918 43.478 5.06 6.17 45.82 1.73
5679 7757 3.826729 GAGCCTGTTTGGTTCCAATAAGT 59.173 43.478 5.06 0.00 39.78 2.24
5680 7758 3.826729 AGCCTGTTTGGTTCCAATAAGTC 59.173 43.478 5.06 0.00 38.35 3.01
5681 7759 3.572255 GCCTGTTTGGTTCCAATAAGTCA 59.428 43.478 5.06 1.06 38.35 3.41
5682 7760 4.558697 GCCTGTTTGGTTCCAATAAGTCAC 60.559 45.833 5.06 0.71 38.35 3.67
5683 7761 4.022329 CCTGTTTGGTTCCAATAAGTCACC 60.022 45.833 5.06 0.00 0.00 4.02
5684 7762 3.892588 TGTTTGGTTCCAATAAGTCACCC 59.107 43.478 5.06 0.00 0.00 4.61
5685 7763 2.483014 TGGTTCCAATAAGTCACCCG 57.517 50.000 0.00 0.00 0.00 5.28
5686 7764 1.979308 TGGTTCCAATAAGTCACCCGA 59.021 47.619 0.00 0.00 0.00 5.14
5687 7765 2.289819 TGGTTCCAATAAGTCACCCGAC 60.290 50.000 0.00 0.00 42.95 4.79
5707 7785 4.341487 GACTTATAGGGCCTGTTTGGTTT 58.659 43.478 18.53 0.00 38.35 3.27
5834 7942 3.191791 CACACCAATCAACATCATGCAGA 59.808 43.478 0.00 0.00 0.00 4.26
5847 7955 0.839946 ATGCAGATGGTAGGACCCAC 59.160 55.000 0.00 0.00 37.50 4.61
6001 8110 4.586841 TGACTTATTTGGAACCAAACAGGG 59.413 41.667 19.23 12.59 46.80 4.45
6099 8211 4.886489 TGACACATCTTTTCACACCAATCA 59.114 37.500 0.00 0.00 0.00 2.57
6120 8232 0.106369 CATCATGCAGGTGGTGGGAT 60.106 55.000 0.00 0.00 0.00 3.85
6122 8234 1.206811 TCATGCAGGTGGTGGGATCA 61.207 55.000 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.447314 GACGGGAAGTAAGGCCACG 60.447 63.158 5.01 0.00 0.00 4.94
11 12 2.975536 CGACGGGAAGTAAGGCCA 59.024 61.111 5.01 0.00 0.00 5.36
28 29 2.927553 AGGACGAGCATTGAATTTGC 57.072 45.000 0.00 0.00 40.45 3.68
47 52 0.174845 CTGGATACGCTCGTCCCAAA 59.825 55.000 14.25 0.00 42.51 3.28
66 71 0.940047 GCTTATCTACGAGTGCGGCC 60.940 60.000 0.00 0.00 43.17 6.13
69 74 1.972640 CGATGCTTATCTACGAGTGCG 59.027 52.381 0.00 0.00 44.79 5.34
123 131 3.801698 ACCATGCACACTATGATCTGTC 58.198 45.455 0.00 0.00 0.00 3.51
136 144 0.392336 TTTTGGCAGGAACCATGCAC 59.608 50.000 5.96 0.00 45.68 4.57
137 145 0.392336 GTTTTGGCAGGAACCATGCA 59.608 50.000 5.96 0.00 45.68 3.96
143 151 3.185797 CGTACTACAGTTTTGGCAGGAAC 59.814 47.826 7.50 7.50 0.00 3.62
222 230 3.488978 CGCTGCTCTGCTCTGTGC 61.489 66.667 0.00 0.00 43.25 4.57
223 231 2.814341 CCGCTGCTCTGCTCTGTG 60.814 66.667 0.00 0.00 0.00 3.66
224 232 4.756458 GCCGCTGCTCTGCTCTGT 62.756 66.667 0.00 0.00 33.53 3.41
243 253 1.399714 CATGCATTCCATGTCCTGCT 58.600 50.000 0.00 0.00 45.05 4.24
306 316 2.594592 GGTTTGCTGGGTCGTGCT 60.595 61.111 0.00 0.00 0.00 4.40
378 396 4.560856 TTTGTTGGCGCGTGTGGC 62.561 61.111 8.43 0.00 38.69 5.01
400 418 0.041090 AGCTTGGGTTTGGGGGTATG 59.959 55.000 0.00 0.00 0.00 2.39
434 456 1.975680 GTGGCCTCGGATCCCTAATTA 59.024 52.381 6.06 0.00 0.00 1.40
435 457 0.765510 GTGGCCTCGGATCCCTAATT 59.234 55.000 6.06 0.00 0.00 1.40
488 523 2.018086 AGGGAGAGGAGAGGAGGGG 61.018 68.421 0.00 0.00 0.00 4.79
492 527 0.631998 ATGGGAGGGAGAGGAGAGGA 60.632 60.000 0.00 0.00 0.00 3.71
493 528 0.178935 GATGGGAGGGAGAGGAGAGG 60.179 65.000 0.00 0.00 0.00 3.69
495 530 1.669927 GGGATGGGAGGGAGAGGAGA 61.670 65.000 0.00 0.00 0.00 3.71
497 532 1.630333 AGGGATGGGAGGGAGAGGA 60.630 63.158 0.00 0.00 0.00 3.71
498 533 1.152139 GAGGGATGGGAGGGAGAGG 60.152 68.421 0.00 0.00 0.00 3.69
500 535 2.609339 CGAGGGATGGGAGGGAGA 59.391 66.667 0.00 0.00 0.00 3.71
537 573 4.899457 TGTGAGGATCCGGTAACTATTGAT 59.101 41.667 5.98 0.00 0.00 2.57
785 831 2.716017 GGAGTGAGCTGAGGTCGGG 61.716 68.421 7.20 0.00 32.15 5.14
790 836 0.617249 AGAAGGGGAGTGAGCTGAGG 60.617 60.000 0.00 0.00 0.00 3.86
897 966 2.389386 GCATTATGGCGTTCGGTGA 58.611 52.632 0.00 0.00 0.00 4.02
925 994 1.144936 CCTACCTACTGCTGCTGCC 59.855 63.158 13.47 0.00 38.71 4.85
1422 1510 3.995219 CTGCATCGTGCTCTGCGGA 62.995 63.158 10.54 0.00 45.62 5.54
1670 1761 0.679002 TAGGAAGTCCCACGACGAGG 60.679 60.000 0.00 2.17 44.28 4.63
1770 1861 2.486504 CTACGGCTCGGCGTGTAA 59.513 61.111 25.63 7.67 0.00 2.41
1943 2034 3.338126 CTCCGGTTGTCGACCTCCG 62.338 68.421 29.10 29.10 46.92 4.63
1944 2035 2.572284 CTCCGGTTGTCGACCTCC 59.428 66.667 14.12 13.93 46.92 4.30
1945 2036 1.530013 TTCCTCCGGTTGTCGACCTC 61.530 60.000 14.12 5.81 46.92 3.85
1946 2037 0.903454 ATTCCTCCGGTTGTCGACCT 60.903 55.000 14.12 0.00 46.92 3.85
1947 2038 0.739813 CATTCCTCCGGTTGTCGACC 60.740 60.000 14.12 0.00 45.55 4.79
1948 2039 0.037605 ACATTCCTCCGGTTGTCGAC 60.038 55.000 9.11 9.11 42.43 4.20
2440 2531 8.342634 TCACAGAAAAGTGCTTAACAGAAATAC 58.657 33.333 0.00 0.00 39.35 1.89
2447 2538 6.578944 TCTACTCACAGAAAAGTGCTTAACA 58.421 36.000 0.00 0.00 39.35 2.41
2487 2578 9.060347 TGAATGATGAACTAAAATCATAGCTCC 57.940 33.333 0.00 0.00 41.56 4.70
2522 2613 5.163374 GCATTCTTATTCAAATCCCCTTGCT 60.163 40.000 0.00 0.00 0.00 3.91
2594 2686 4.448732 TGATGAGATGACACACTGTTTTCG 59.551 41.667 0.00 0.00 0.00 3.46
2701 2793 6.697395 ACAAAAAGGCCATTGGACTAAATAC 58.303 36.000 12.63 0.00 42.44 1.89
2741 2833 4.467769 CCCACTCCATTATTCAGCTCAAT 58.532 43.478 0.00 0.00 0.00 2.57
2826 2919 1.134401 TGGGTGCCGAAAAATTGCAAA 60.134 42.857 1.71 0.00 36.65 3.68
2892 2985 5.557866 ACCAGAACCAACCAACTAGTTATC 58.442 41.667 8.04 0.00 0.00 1.75
2894 2987 5.603813 AGTACCAGAACCAACCAACTAGTTA 59.396 40.000 8.04 0.00 0.00 2.24
2895 2988 3.945640 ACCAGAACCAACCAACTAGTT 57.054 42.857 1.12 1.12 0.00 2.24
2896 2989 3.971971 AGTACCAGAACCAACCAACTAGT 59.028 43.478 0.00 0.00 0.00 2.57
2897 2990 4.566987 GAGTACCAGAACCAACCAACTAG 58.433 47.826 0.00 0.00 0.00 2.57
2898 2991 3.006110 CGAGTACCAGAACCAACCAACTA 59.994 47.826 0.00 0.00 0.00 2.24
2899 2992 2.224209 CGAGTACCAGAACCAACCAACT 60.224 50.000 0.00 0.00 0.00 3.16
2941 3034 3.118038 ACCTTGACTCCTAAAGTGCACAA 60.118 43.478 21.04 2.80 38.74 3.33
2959 3052 0.981183 TATCACGCCAAGACCACCTT 59.019 50.000 0.00 0.00 34.91 3.50
3005 3272 6.325028 TGAGAAAGATACTTCCCATAGTGGAG 59.675 42.308 0.00 0.00 40.96 3.86
3038 3305 0.680618 CCATGGTTTCTTGCAAGCCA 59.319 50.000 21.99 21.87 0.00 4.75
3039 3306 0.681175 ACCATGGTTTCTTGCAAGCC 59.319 50.000 21.99 17.00 0.00 4.35
3052 3335 2.035704 TGTTAAAGCAACTGCACCATGG 59.964 45.455 11.19 11.19 45.16 3.66
3061 3344 7.885399 AGACCTATCTCAATTGTTAAAGCAACT 59.115 33.333 5.13 0.00 38.05 3.16
3069 3352 7.973048 ACCAGTAGACCTATCTCAATTGTTA 57.027 36.000 5.13 0.00 36.29 2.41
3194 3481 4.098807 ACGATGGCCTTGTTAACAAAGTTT 59.901 37.500 20.89 6.37 35.15 2.66
3211 3498 6.901265 TGATTGCATAATGTTGATACGATGG 58.099 36.000 0.00 0.00 0.00 3.51
3362 3649 8.417106 GTGGGATATGTATAGACATGACCTATG 58.583 40.741 13.22 0.00 46.11 2.23
3367 3654 9.640963 GTTAAGTGGGATATGTATAGACATGAC 57.359 37.037 13.22 6.70 46.11 3.06
3408 3709 3.019564 GCCTACAAGAGAAATGCCACAT 58.980 45.455 0.00 0.00 0.00 3.21
3459 3760 7.165460 AGAAGCTTTAGTCTCTTAGAGTTCC 57.835 40.000 9.25 0.00 0.00 3.62
3679 3980 6.734104 ACACAATGAGAAGATTAGAGCAAC 57.266 37.500 0.00 0.00 0.00 4.17
3690 3991 8.965172 CAAGAAATCAGAAAACACAATGAGAAG 58.035 33.333 0.00 0.00 0.00 2.85
3719 4020 3.735746 GCCGACTGAAAAGAACATTTTGG 59.264 43.478 0.00 0.00 0.00 3.28
3735 4036 4.152647 TCATATCTTATGACTGGCCGACT 58.847 43.478 0.00 0.00 0.00 4.18
3789 4090 4.096833 TCAAATGTGTGCTCCATTCATAGC 59.903 41.667 0.00 0.00 39.25 2.97
3790 4091 5.823209 TCAAATGTGTGCTCCATTCATAG 57.177 39.130 3.89 0.00 31.49 2.23
3863 4164 3.185246 ACAGATTATGCAAGAGTCGGG 57.815 47.619 0.00 0.00 0.00 5.14
3892 5732 6.671190 TCTTCAGCACATAACATGTTTTCAG 58.329 36.000 17.78 7.02 42.70 3.02
3962 5802 7.393234 AGCTAGCACCTAGTGAGAAATAGATAG 59.607 40.741 18.83 0.00 36.53 2.08
3976 5816 5.521906 TGTTAGAATCAGCTAGCACCTAG 57.478 43.478 18.83 1.12 37.16 3.02
3984 5824 6.818644 GGTGATCAGTTTGTTAGAATCAGCTA 59.181 38.462 0.00 0.00 33.92 3.32
4014 5854 2.220313 CCACATTTTTGCAAACCTGGG 58.780 47.619 12.39 12.88 0.00 4.45
4067 5907 6.348540 GGTTTTTCGCTTCTGATATCACTTGT 60.349 38.462 0.00 0.00 0.00 3.16
4103 5943 1.604604 CGTTGGTTCCACCTGATGTT 58.395 50.000 0.00 0.00 39.58 2.71
4131 5971 2.119655 GCTCCAGCTCCATTGCCAG 61.120 63.158 0.00 0.00 38.21 4.85
4142 5982 5.238214 CCATTTAATCAGTTCTAGCTCCAGC 59.762 44.000 0.00 0.00 42.49 4.85
4259 6099 2.722201 CGAGTAGGTGGGTGCCTCC 61.722 68.421 0.00 0.00 39.94 4.30
4284 6124 0.032678 ATCACTGGAGCGCCTATTCG 59.967 55.000 8.34 0.00 34.31 3.34
4286 6126 2.717639 AAATCACTGGAGCGCCTATT 57.282 45.000 8.34 0.00 34.31 1.73
4376 6216 1.302033 CACGCTTGAGACAAGGGCT 60.302 57.895 21.99 11.05 34.03 5.19
4388 6228 3.425713 CACAGATGGCGCACGCTT 61.426 61.111 15.36 2.79 41.60 4.68
4421 6261 1.078709 CGCTCCTTTCGCTTTGATCA 58.921 50.000 0.00 0.00 0.00 2.92
4438 6278 1.412606 CTTTCTCGAACTGCGACGC 59.587 57.895 14.19 14.19 45.59 5.19
4445 6285 2.300437 CCACTTCTCCCTTTCTCGAACT 59.700 50.000 0.00 0.00 0.00 3.01
4454 6294 3.848975 ACATCTTGATCCACTTCTCCCTT 59.151 43.478 0.00 0.00 0.00 3.95
4469 6309 1.089920 CCTTCCGCTCCAACATCTTG 58.910 55.000 0.00 0.00 0.00 3.02
4482 6322 0.740868 TTGATCTCAAGCGCCTTCCG 60.741 55.000 2.29 0.00 40.75 4.30
4493 6333 1.623311 TCGGCTTCCTTGTTGATCTCA 59.377 47.619 0.00 0.00 0.00 3.27
4520 6360 0.829182 CCAAGGCCAGCTTCCTGTTT 60.829 55.000 5.01 0.00 37.38 2.83
4559 6399 0.462225 TCGTTGGACACCGCTGAAAA 60.462 50.000 0.00 0.00 0.00 2.29
4574 6414 1.529826 GCCTCGTACGTTCGTATCGTT 60.530 52.381 16.05 0.00 41.72 3.85
4600 6440 0.933097 CACGCTGCTCGCTTCAATAT 59.067 50.000 0.00 0.00 43.23 1.28
4604 6444 4.967271 TGCACGCTGCTCGCTTCA 62.967 61.111 10.77 0.00 45.31 3.02
4610 6450 2.175184 AATTCACGTGCACGCTGCTC 62.175 55.000 37.35 0.00 45.31 4.26
4722 6562 0.171455 CTCGAACTCCCTCTTGACGG 59.829 60.000 0.00 0.00 0.00 4.79
4745 6585 2.595238 ACTTCTCTTAGTCACCGTGGT 58.405 47.619 0.00 0.00 0.00 4.16
4757 6597 3.879892 GACTTGGTGCTCAAACTTCTCTT 59.120 43.478 0.00 0.00 34.56 2.85
4758 6598 3.471680 GACTTGGTGCTCAAACTTCTCT 58.528 45.455 0.00 0.00 34.56 3.10
4759 6599 2.550180 GGACTTGGTGCTCAAACTTCTC 59.450 50.000 0.00 0.00 34.56 2.87
4763 6603 1.972872 CTGGACTTGGTGCTCAAACT 58.027 50.000 0.00 0.00 34.56 2.66
4764 6604 0.312102 GCTGGACTTGGTGCTCAAAC 59.688 55.000 0.00 0.00 34.56 2.93
4766 6606 0.183492 AAGCTGGACTTGGTGCTCAA 59.817 50.000 0.00 0.00 37.17 3.02
4799 6641 5.183713 CCAAATCCACAGATTGCAAGTTCTA 59.816 40.000 4.94 0.00 42.03 2.10
4829 6672 3.313012 TCACCATGAAACTACGGACTG 57.687 47.619 0.00 0.00 0.00 3.51
4834 6677 2.352651 CCAGCATCACCATGAAACTACG 59.647 50.000 0.00 0.00 30.57 3.51
4943 6790 5.368989 ACCATAGCCTTATCTTACACAAGC 58.631 41.667 0.00 0.00 0.00 4.01
5052 6905 2.167861 GCGAGGAGGCGTTGACATC 61.168 63.158 0.00 0.00 0.00 3.06
5071 6924 1.909781 CCAACCAAGGCACCATGCT 60.910 57.895 0.13 0.00 44.28 3.79
5073 6926 3.379880 CCCAACCAAGGCACCATG 58.620 61.111 0.00 0.00 0.00 3.66
5125 7188 6.601613 CACAAAAGCCCATCCATAAACTAGTA 59.398 38.462 0.00 0.00 0.00 1.82
5195 7258 3.044305 AAAGCGCTGGCGAGACAC 61.044 61.111 12.58 0.31 46.35 3.67
5220 7283 1.295792 TTTCCGCCTGTCATTATCGC 58.704 50.000 0.00 0.00 0.00 4.58
5228 7291 2.288152 TGCTGAAAATTTTCCGCCTGTC 60.288 45.455 31.63 14.12 43.81 3.51
5231 7294 1.335872 CGTGCTGAAAATTTTCCGCCT 60.336 47.619 31.63 1.50 43.81 5.52
5316 7379 2.252260 CAAAGCAACGACCCTGCG 59.748 61.111 0.00 0.00 44.75 5.18
5377 7444 1.376424 CTGCTGTGCCAGTACAGGG 60.376 63.158 16.16 2.76 46.32 4.45
5387 7455 1.303799 ATGCTGTGCTACTGCTGTGC 61.304 55.000 6.48 8.57 42.56 4.57
5498 7566 5.592104 TTAGATCCGCAAACACAGATCTA 57.408 39.130 0.00 4.82 42.76 1.98
5499 7567 4.471904 TTAGATCCGCAAACACAGATCT 57.528 40.909 6.60 6.60 45.60 2.75
5513 7585 5.045797 AGGGTTTGGTCAGTACTTTAGATCC 60.046 44.000 0.00 0.00 0.00 3.36
5524 7596 1.697432 TCGATGAAGGGTTTGGTCAGT 59.303 47.619 0.00 0.00 0.00 3.41
5529 7601 3.527533 TCGTAATCGATGAAGGGTTTGG 58.472 45.455 0.00 0.00 41.35 3.28
5605 7677 5.576895 CATCGTATCTCTACATCGATGCAT 58.423 41.667 25.11 9.51 46.39 3.96
5641 7713 5.869579 ACAGGCTCTAATGACAGAAGAAAA 58.130 37.500 0.00 0.00 0.00 2.29
5645 7717 4.394300 CCAAACAGGCTCTAATGACAGAAG 59.606 45.833 0.00 0.00 0.00 2.85
5657 7735 3.826729 ACTTATTGGAACCAAACAGGCTC 59.173 43.478 10.36 0.00 43.14 4.70
5658 7736 3.826729 GACTTATTGGAACCAAACAGGCT 59.173 43.478 10.36 0.00 43.14 4.58
5659 7737 3.572255 TGACTTATTGGAACCAAACAGGC 59.428 43.478 10.36 11.26 43.14 4.85
5660 7738 4.022329 GGTGACTTATTGGAACCAAACAGG 60.022 45.833 10.36 5.07 45.67 4.00
5661 7739 4.022329 GGGTGACTTATTGGAACCAAACAG 60.022 45.833 10.36 11.01 39.55 3.16
5662 7740 3.892588 GGGTGACTTATTGGAACCAAACA 59.107 43.478 10.36 0.00 39.55 2.83
5663 7741 3.057806 CGGGTGACTTATTGGAACCAAAC 60.058 47.826 10.36 3.26 39.55 2.93
5664 7742 3.150767 CGGGTGACTTATTGGAACCAAA 58.849 45.455 10.36 0.00 39.55 3.28
5665 7743 2.372504 TCGGGTGACTTATTGGAACCAA 59.627 45.455 8.75 8.75 40.47 3.67
5666 7744 1.979308 TCGGGTGACTTATTGGAACCA 59.021 47.619 0.00 0.00 32.28 3.67
5667 7745 2.353323 GTCGGGTGACTTATTGGAACC 58.647 52.381 0.00 0.00 42.08 3.62
5678 7756 0.391966 GGCCCTATAAGTCGGGTGAC 59.608 60.000 0.00 0.00 45.86 3.67
5679 7757 0.263765 AGGCCCTATAAGTCGGGTGA 59.736 55.000 0.00 0.00 42.67 4.02
5680 7758 0.393077 CAGGCCCTATAAGTCGGGTG 59.607 60.000 0.00 0.00 42.67 4.61
5681 7759 0.031414 ACAGGCCCTATAAGTCGGGT 60.031 55.000 0.00 0.00 42.67 5.28
5682 7760 1.129058 AACAGGCCCTATAAGTCGGG 58.871 55.000 0.00 0.00 43.60 5.14
5683 7761 2.561569 CAAACAGGCCCTATAAGTCGG 58.438 52.381 0.00 0.00 0.00 4.79
5684 7762 2.093128 ACCAAACAGGCCCTATAAGTCG 60.093 50.000 0.00 0.00 43.14 4.18
5685 7763 3.646736 ACCAAACAGGCCCTATAAGTC 57.353 47.619 0.00 0.00 43.14 3.01
5686 7764 4.202631 TGAAACCAAACAGGCCCTATAAGT 60.203 41.667 0.00 0.00 43.14 2.24
5687 7765 4.340617 TGAAACCAAACAGGCCCTATAAG 58.659 43.478 0.00 0.00 43.14 1.73
5688 7766 4.390129 TGAAACCAAACAGGCCCTATAA 57.610 40.909 0.00 0.00 43.14 0.98
5689 7767 4.390129 TTGAAACCAAACAGGCCCTATA 57.610 40.909 0.00 0.00 43.14 1.31
5690 7768 2.990740 TGAAACCAAACAGGCCCTAT 57.009 45.000 0.00 0.00 43.14 2.57
5809 7917 2.673775 TGATGTTGATTGGTGTGGGT 57.326 45.000 0.00 0.00 0.00 4.51
5834 7942 2.237893 CCTTTTACGTGGGTCCTACCAT 59.762 50.000 0.00 0.00 43.59 3.55
5839 7947 1.494716 CCCCCTTTTACGTGGGTCCT 61.495 60.000 7.83 0.00 41.82 3.85
5847 7955 5.737860 ACTTATAAGTCACCCCCTTTTACG 58.262 41.667 12.50 0.00 32.86 3.18
6025 8137 7.011950 CCAAACAGGCGTGACTTATAATTCATA 59.988 37.037 14.38 0.00 0.00 2.15
6026 8138 6.183360 CCAAACAGGCGTGACTTATAATTCAT 60.183 38.462 14.38 0.00 0.00 2.57
6030 8142 4.585879 ACCAAACAGGCGTGACTTATAAT 58.414 39.130 14.38 0.00 43.14 1.28
6083 8195 6.448852 CATGATGTTGATTGGTGTGAAAAGA 58.551 36.000 0.00 0.00 0.00 2.52
6088 8200 3.155501 TGCATGATGTTGATTGGTGTGA 58.844 40.909 0.00 0.00 0.00 3.58
6099 8211 0.612732 CCCACCACCTGCATGATGTT 60.613 55.000 0.00 0.00 0.00 2.71
6120 8232 1.133199 AGTCACCCCCTTTTGCATTGA 60.133 47.619 0.00 0.00 0.00 2.57
6122 8234 2.101640 AAGTCACCCCCTTTTGCATT 57.898 45.000 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.