Multiple sequence alignment - TraesCS2B01G423200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G423200 chr2B 100.000 3221 0 0 917 4137 608539784 608543004 0.000000e+00 5949.0
1 TraesCS2B01G423200 chr2B 100.000 617 0 0 1 617 608538868 608539484 0.000000e+00 1140.0
2 TraesCS2B01G423200 chr2B 81.503 1184 155 34 1905 3071 608668035 608669171 0.000000e+00 915.0
3 TraesCS2B01G423200 chr2B 85.690 594 57 10 1971 2549 608802832 608803412 5.920000e-168 601.0
4 TraesCS2B01G423200 chr2B 78.873 710 79 34 1153 1816 608802001 608802685 8.270000e-112 414.0
5 TraesCS2B01G423200 chr2B 88.816 152 16 1 2591 2741 608803500 608803651 7.060000e-43 185.0
6 TraesCS2B01G423200 chr2B 94.000 50 3 0 413 462 608801499 608801548 4.430000e-10 76.8
7 TraesCS2B01G423200 chr2B 88.235 51 2 4 3619 3665 437938178 437938128 1.610000e-04 58.4
8 TraesCS2B01G423200 chr2D 93.301 2881 131 28 945 3784 516862222 516865081 0.000000e+00 4194.0
9 TraesCS2B01G423200 chr2D 81.376 1192 154 39 1905 3071 516925496 516926644 0.000000e+00 909.0
10 TraesCS2B01G423200 chr2D 92.675 587 26 4 1 585 516861354 516861925 0.000000e+00 830.0
11 TraesCS2B01G423200 chr2D 86.183 579 59 6 1971 2549 517087283 517087840 1.270000e-169 606.0
12 TraesCS2B01G423200 chr2D 78.017 928 103 51 1057 1908 517086255 517087157 1.340000e-134 490.0
13 TraesCS2B01G423200 chr2D 87.269 432 44 4 1971 2395 517038306 517038733 2.240000e-132 483.0
14 TraesCS2B01G423200 chr2D 78.401 713 80 37 1153 1816 517037475 517038162 3.000000e-106 396.0
15 TraesCS2B01G423200 chr2D 80.658 486 69 14 2591 3071 517087912 517088377 1.830000e-93 353.0
16 TraesCS2B01G423200 chr2D 92.140 229 13 5 3911 4136 516866431 516866657 6.670000e-83 318.0
17 TraesCS2B01G423200 chr2D 84.906 265 35 4 2809 3071 517045911 517046172 3.170000e-66 263.0
18 TraesCS2B01G423200 chr2D 86.154 195 23 3 2591 2784 517045661 517045852 1.510000e-49 207.0
19 TraesCS2B01G423200 chr2D 92.683 123 9 0 2427 2549 517045451 517045573 1.180000e-40 178.0
20 TraesCS2B01G423200 chr2D 93.750 96 6 0 3817 3912 516866301 516866396 1.200000e-30 145.0
21 TraesCS2B01G423200 chr2D 78.632 234 28 13 305 525 517036939 517037163 7.210000e-28 135.0
22 TraesCS2B01G423200 chr2D 75.714 210 33 10 305 500 517085850 517086055 5.700000e-14 89.8
23 TraesCS2B01G423200 chr2A 92.604 2515 109 18 917 3404 661081627 661084091 0.000000e+00 3542.0
24 TraesCS2B01G423200 chr2A 95.638 619 24 3 3519 4136 661084272 661084888 0.000000e+00 990.0
25 TraesCS2B01G423200 chr2A 81.270 1260 137 52 1366 2549 661394770 661396006 0.000000e+00 928.0
26 TraesCS2B01G423200 chr2A 81.403 1183 159 34 1905 3071 661152440 661153577 0.000000e+00 909.0
27 TraesCS2B01G423200 chr2A 81.501 1119 154 32 1971 3071 661448236 661449319 0.000000e+00 870.0
28 TraesCS2B01G423200 chr2A 91.214 626 28 9 1 617 661080956 661081563 0.000000e+00 826.0
29 TraesCS2B01G423200 chr2A 86.034 179 22 2 2606 2784 661396101 661396276 5.460000e-44 189.0
30 TraesCS2B01G423200 chr2A 90.370 135 11 1 3390 3522 661084107 661084241 4.250000e-40 176.0
31 TraesCS2B01G423200 chr2A 83.041 171 14 2 1153 1323 661394543 661394698 1.550000e-29 141.0
32 TraesCS2B01G423200 chr2A 75.732 239 37 10 305 525 661394095 661394330 2.630000e-17 100.0
33 TraesCS2B01G423200 chr2A 75.207 242 35 12 305 525 661393700 661393937 1.580000e-14 91.6
34 TraesCS2B01G423200 chr2A 81.250 80 11 3 2809 2887 661396335 661396411 1.240000e-05 62.1
35 TraesCS2B01G423200 chr1B 92.810 918 53 5 1009 1926 676246642 676247546 0.000000e+00 1317.0
36 TraesCS2B01G423200 chr1B 92.593 567 32 4 1009 1574 491697442 491697999 0.000000e+00 806.0
37 TraesCS2B01G423200 chr1B 89.961 259 14 2 1565 1815 491699549 491699803 1.430000e-84 324.0
38 TraesCS2B01G423200 chr1B 93.902 82 4 1 1802 1883 491699923 491700003 5.620000e-24 122.0
39 TraesCS2B01G423200 chr1B 76.887 212 40 9 3930 4136 624001077 624001284 1.220000e-20 111.0
40 TraesCS2B01G423200 chr1B 89.583 48 5 0 3628 3675 271888671 271888624 1.240000e-05 62.1
41 TraesCS2B01G423200 chr5A 92.480 891 54 7 1009 1899 419361106 419361983 0.000000e+00 1262.0
42 TraesCS2B01G423200 chr5A 85.366 205 26 3 3934 4136 7681529 7681327 4.190000e-50 209.0
43 TraesCS2B01G423200 chr5A 87.719 57 2 5 3622 3674 255924649 255924704 1.240000e-05 62.1
44 TraesCS2B01G423200 chr5A 87.719 57 2 5 3622 3674 582549625 582549680 1.240000e-05 62.1
45 TraesCS2B01G423200 chr4A 89.978 918 52 18 1009 1926 541336972 541336095 0.000000e+00 1149.0
46 TraesCS2B01G423200 chr7B 91.581 487 40 1 1440 1926 541490096 541490581 0.000000e+00 671.0
47 TraesCS2B01G423200 chr7A 78.455 492 60 31 3679 4136 83301062 83300583 3.150000e-71 279.0
48 TraesCS2B01G423200 chr1D 85.520 221 29 3 3919 4136 467409887 467409667 1.160000e-55 228.0
49 TraesCS2B01G423200 chr1D 83.568 213 23 9 3926 4136 6412477 6412679 5.460000e-44 189.0
50 TraesCS2B01G423200 chr5D 85.714 210 26 4 3931 4136 9549807 9549598 6.960000e-53 219.0
51 TraesCS2B01G423200 chr6B 86.857 175 21 2 3928 4100 684145853 684145679 1.170000e-45 195.0
52 TraesCS2B01G423200 chr7D 87.719 57 1 6 3623 3674 623409372 623409317 1.240000e-05 62.1
53 TraesCS2B01G423200 chr6A 90.196 51 0 5 3628 3674 390364832 390364783 1.240000e-05 62.1
54 TraesCS2B01G423200 chr3A 100.000 29 0 0 3628 3656 479194867 479194839 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G423200 chr2B 608538868 608543004 4136 False 3544.500000 5949 100.000000 1 4137 2 chr2B.!!$F2 4136
1 TraesCS2B01G423200 chr2B 608668035 608669171 1136 False 915.000000 915 81.503000 1905 3071 1 chr2B.!!$F1 1166
2 TraesCS2B01G423200 chr2B 608801499 608803651 2152 False 319.200000 601 86.844750 413 2741 4 chr2B.!!$F3 2328
3 TraesCS2B01G423200 chr2D 516861354 516866657 5303 False 1371.750000 4194 92.966500 1 4136 4 chr2D.!!$F2 4135
4 TraesCS2B01G423200 chr2D 516925496 516926644 1148 False 909.000000 909 81.376000 1905 3071 1 chr2D.!!$F1 1166
5 TraesCS2B01G423200 chr2D 517085850 517088377 2527 False 384.700000 606 80.143000 305 3071 4 chr2D.!!$F5 2766
6 TraesCS2B01G423200 chr2D 517036939 517038733 1794 False 338.000000 483 81.434000 305 2395 3 chr2D.!!$F3 2090
7 TraesCS2B01G423200 chr2D 517045451 517046172 721 False 216.000000 263 87.914333 2427 3071 3 chr2D.!!$F4 644
8 TraesCS2B01G423200 chr2A 661080956 661084888 3932 False 1383.500000 3542 92.456500 1 4136 4 chr2A.!!$F3 4135
9 TraesCS2B01G423200 chr2A 661152440 661153577 1137 False 909.000000 909 81.403000 1905 3071 1 chr2A.!!$F1 1166
10 TraesCS2B01G423200 chr2A 661448236 661449319 1083 False 870.000000 870 81.501000 1971 3071 1 chr2A.!!$F2 1100
11 TraesCS2B01G423200 chr2A 661393700 661396411 2711 False 251.950000 928 80.422333 305 2887 6 chr2A.!!$F4 2582
12 TraesCS2B01G423200 chr1B 676246642 676247546 904 False 1317.000000 1317 92.810000 1009 1926 1 chr1B.!!$F2 917
13 TraesCS2B01G423200 chr1B 491697442 491700003 2561 False 417.333333 806 92.152000 1009 1883 3 chr1B.!!$F3 874
14 TraesCS2B01G423200 chr5A 419361106 419361983 877 False 1262.000000 1262 92.480000 1009 1899 1 chr5A.!!$F2 890
15 TraesCS2B01G423200 chr4A 541336095 541336972 877 True 1149.000000 1149 89.978000 1009 1926 1 chr4A.!!$R1 917

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
954 1066 0.603569 AGACACTACAGCGAGGGTTG 59.396 55.0 0.0 0.0 31.50 3.77 F
1288 2000 0.106619 AGGACTACGGTGCTCTAGGG 60.107 60.0 0.0 0.0 40.03 3.53 F
1489 2241 0.170561 CGAAGTCATTCCTCGTCGGT 59.829 55.0 0.0 0.0 33.50 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2123 4716 0.942410 GCTGCGTCACGTTGACCTTA 60.942 55.0 0.0 0.56 44.20 2.69 R
3122 5854 0.108138 AGGTGCTAACTGCTAAGCCG 60.108 55.0 0.0 0.00 43.37 5.52 R
3441 6205 0.108424 CCTCCCGCTCTCAGAAACTG 60.108 60.0 0.0 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.607499 AGAGGATCCGATTCAGCATCT 58.393 47.619 5.98 0.00 33.66 2.90
50 51 0.962489 CCCCGTAAATGCAAACCACA 59.038 50.000 0.00 0.00 0.00 4.17
90 91 1.059369 CGCTCGAGTCCGCAAAATG 59.941 57.895 15.13 0.00 35.37 2.32
121 122 7.869429 CACCTGGGCAATAAAATGAGAAATATC 59.131 37.037 0.00 0.00 0.00 1.63
186 194 5.290643 CGCCATATCTACCTCTACGTAGTAC 59.709 48.000 21.53 0.00 45.11 2.73
220 228 0.737219 ATACGCACGTCTACTCACCC 59.263 55.000 0.00 0.00 0.00 4.61
280 288 3.552541 GCGATCGAACGTATATGTCACT 58.447 45.455 21.57 0.00 35.59 3.41
281 289 3.598668 GCGATCGAACGTATATGTCACTC 59.401 47.826 21.57 0.00 35.59 3.51
282 290 3.833608 CGATCGAACGTATATGTCACTCG 59.166 47.826 10.26 10.18 0.00 4.18
283 291 3.597377 TCGAACGTATATGTCACTCGG 57.403 47.619 14.54 1.46 0.00 4.63
284 292 2.938451 TCGAACGTATATGTCACTCGGT 59.062 45.455 14.54 0.00 0.00 4.69
348 359 2.251040 TCATTTCTTCGACGCGAGAAG 58.749 47.619 29.11 29.11 44.65 2.85
415 445 3.130869 TGCATGATCTGGCAAAATACACC 59.869 43.478 9.04 0.00 37.03 4.16
478 514 9.520204 TCTTTGTTTGAATGAAGATGAAGAAAC 57.480 29.630 0.00 0.00 0.00 2.78
534 646 7.570132 GGGGTGCACATATATATACATACCAA 58.430 38.462 20.43 0.00 0.00 3.67
548 660 4.631740 CCAAACCCACCCCCACCC 62.632 72.222 0.00 0.00 0.00 4.61
549 661 4.631740 CAAACCCACCCCCACCCC 62.632 72.222 0.00 0.00 0.00 4.95
569 681 1.544246 CCACCTTTCCCATCGTTTTCC 59.456 52.381 0.00 0.00 0.00 3.13
596 708 3.859386 GCAAAAACATTAGCTTGGATCGG 59.141 43.478 0.00 0.00 0.00 4.18
938 1050 5.195001 GAGAGAGAGAGAGAGAGAGAGAC 57.805 52.174 0.00 0.00 0.00 3.36
940 1052 4.404073 AGAGAGAGAGAGAGAGAGAGACAC 59.596 50.000 0.00 0.00 0.00 3.67
954 1066 0.603569 AGACACTACAGCGAGGGTTG 59.396 55.000 0.00 0.00 31.50 3.77
1288 2000 0.106619 AGGACTACGGTGCTCTAGGG 60.107 60.000 0.00 0.00 40.03 3.53
1489 2241 0.170561 CGAAGTCATTCCTCGTCGGT 59.829 55.000 0.00 0.00 33.50 4.69
1562 2314 2.178521 CCACTCGTCCGTCCTTCG 59.821 66.667 0.00 0.00 39.52 3.79
1952 4505 4.681483 GGCACCGACGGTTAGTATATAAAC 59.319 45.833 19.02 0.00 31.02 2.01
2222 4815 2.781595 AAGACGTCCACATCACCGGC 62.782 60.000 13.01 0.00 0.00 6.13
2289 4882 2.050714 GCTTCGTCACCGTCGACA 60.051 61.111 17.16 0.00 37.05 4.35
2422 5034 3.810896 GCGTGATGGCCGGGTTTC 61.811 66.667 2.18 0.00 0.00 2.78
2695 5363 1.860641 ACGTGGACCATCCTGTGATA 58.139 50.000 0.00 0.00 37.46 2.15
2722 5390 2.455032 CAGTTCTACGAAGATCGCCAG 58.545 52.381 0.00 0.00 45.12 4.85
2771 5439 1.979855 TGTGTGGATTGAGTGTTGGG 58.020 50.000 0.00 0.00 0.00 4.12
2908 5631 1.183030 ACCTCAACGGGACATCGACA 61.183 55.000 0.00 0.00 36.97 4.35
3159 5891 2.603135 CTAGCAATGCTGTTGGGCGC 62.603 60.000 19.25 0.00 40.10 6.53
3173 5905 1.019278 GGGCGCGTGTATATGGATGG 61.019 60.000 8.43 0.00 0.00 3.51
3259 5991 3.059352 AGCTTTACTGCAAGGTGTAGG 57.941 47.619 0.00 0.00 39.30 3.18
3330 6064 0.680280 GAGCACGAGAGGTCTACCCA 60.680 60.000 0.00 0.00 36.42 4.51
3398 6132 1.737793 GACAATTACGCAGGAAGGGTG 59.262 52.381 0.00 0.00 44.01 4.61
3408 6172 0.486879 AGGAAGGGTGCCCATTTGAA 59.513 50.000 10.26 0.00 38.92 2.69
3419 6183 4.025360 TGCCCATTTGAATGCATTACTCT 58.975 39.130 12.97 0.00 35.08 3.24
3441 6205 0.881796 GGCTCAAAGGGCAGTTACAC 59.118 55.000 0.00 0.00 0.00 2.90
3448 6212 3.577805 AAGGGCAGTTACACAGTTTCT 57.422 42.857 0.00 0.00 0.00 2.52
3546 6345 5.525378 GGTAATTGTAGGCTCATGTTCTCAG 59.475 44.000 0.00 0.00 0.00 3.35
3563 6362 6.881065 TGTTCTCAGAAATCCTTTGATAGTGG 59.119 38.462 0.00 0.00 0.00 4.00
3570 6369 3.981071 TCCTTTGATAGTGGGTCACAG 57.019 47.619 0.78 0.00 36.74 3.66
3574 6373 4.323485 CCTTTGATAGTGGGTCACAGCTAA 60.323 45.833 0.78 0.00 36.74 3.09
3609 6408 2.923121 TGGATAACATGAGGCAAGAGC 58.077 47.619 0.00 0.00 41.10 4.09
3675 6474 3.080300 TGATGGATGGGGTGTACAAAC 57.920 47.619 0.00 0.00 0.00 2.93
3779 6578 4.142513 ACGAGTACTCTACCGAATTCAACC 60.143 45.833 20.34 0.00 0.00 3.77
3806 7810 6.394025 TTGTACTATTTTTGTGGAACCACC 57.606 37.500 19.39 4.42 45.63 4.61
3811 7815 3.550437 TTTTTGTGGAACCACCCATTG 57.450 42.857 19.39 0.00 45.63 2.82
3824 7828 3.569701 CCACCCATTGTATAGGAACATGC 59.430 47.826 0.00 0.00 0.00 4.06
4052 8092 9.504708 GATGATAGGAGAATGAATTGAACTGAT 57.495 33.333 0.00 0.00 0.00 2.90
4136 8177 6.375174 TCCGAGATGAAACATGATGAATTGTT 59.625 34.615 0.00 0.00 37.66 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.971330 AGATGCTGAATCGGATCCTCTT 59.029 45.455 10.75 2.56 40.54 2.85
26 27 2.361789 GTTTGCATTTACGGGGAGCTA 58.638 47.619 0.00 0.00 0.00 3.32
90 91 0.963355 TTTATTGCCCAGGTGACGCC 60.963 55.000 0.00 0.00 37.58 5.68
121 122 0.321564 TCCAAGAGTTCATGGCACCG 60.322 55.000 0.00 0.00 34.89 4.94
186 194 4.516359 GTGCGTATACTCGTCAAGACTAG 58.484 47.826 0.56 0.72 0.00 2.57
280 288 1.358152 ATTTTGAGGGGAGTGACCGA 58.642 50.000 0.00 0.00 40.11 4.69
281 289 3.343941 TTATTTTGAGGGGAGTGACCG 57.656 47.619 0.00 0.00 40.11 4.79
282 290 6.183360 CGTTATTTATTTTGAGGGGAGTGACC 60.183 42.308 0.00 0.00 38.08 4.02
283 291 6.373495 ACGTTATTTATTTTGAGGGGAGTGAC 59.627 38.462 0.00 0.00 0.00 3.67
284 292 6.478129 ACGTTATTTATTTTGAGGGGAGTGA 58.522 36.000 0.00 0.00 0.00 3.41
348 359 1.949631 GGATGGATTCGGCGTCGTC 60.950 63.158 10.18 0.00 37.69 4.20
415 445 1.619654 TGGTGTTGAAGATTGCCCAG 58.380 50.000 0.00 0.00 0.00 4.45
548 660 1.544246 GAAAACGATGGGAAAGGTGGG 59.456 52.381 0.00 0.00 0.00 4.61
549 661 1.544246 GGAAAACGATGGGAAAGGTGG 59.456 52.381 0.00 0.00 0.00 4.61
569 681 3.613737 CCAAGCTAATGTTTTTGCGATGG 59.386 43.478 0.00 0.00 38.41 3.51
596 708 1.818642 ATCAAGTGCCAAGCTCTGTC 58.181 50.000 0.00 0.00 32.56 3.51
938 1050 1.005037 TGCAACCCTCGCTGTAGTG 60.005 57.895 0.00 0.00 0.00 2.74
940 1052 0.602638 TTGTGCAACCCTCGCTGTAG 60.603 55.000 0.00 0.00 34.36 2.74
954 1066 3.002246 TGACTCGTGAAGAATTGTTGTGC 59.998 43.478 0.00 0.00 0.00 4.57
1037 1172 3.878086 GAACATCAGTTCGAGCAAACA 57.122 42.857 1.01 0.00 44.11 2.83
1261 1973 0.109412 CACCGTAGTCCTGGACGTTC 60.109 60.000 20.49 13.45 37.67 3.95
1268 1980 1.025812 CCTAGAGCACCGTAGTCCTG 58.974 60.000 0.00 0.00 0.00 3.86
1341 2093 4.099573 GCCATCAGGTATACGCCAGTATAT 59.900 45.833 0.00 0.00 44.72 0.86
1342 2094 3.446161 GCCATCAGGTATACGCCAGTATA 59.554 47.826 0.00 0.00 38.31 1.47
1489 2241 0.690762 GCCCACTAAACCTGGTGAGA 59.309 55.000 14.22 0.00 36.15 3.27
1562 2314 1.303317 AAACCACGGCCCAGATCAC 60.303 57.895 0.00 0.00 0.00 3.06
1665 4005 5.745312 TCAGCCAATAGTTCTTCTTCTCA 57.255 39.130 0.00 0.00 0.00 3.27
1753 4101 0.892755 TTATCGCTCCACCACGTCTT 59.107 50.000 0.00 0.00 0.00 3.01
1908 4410 6.016610 GTGCCTTAGTTACACAATCCTGAAAA 60.017 38.462 0.00 0.00 34.43 2.29
1952 4505 7.795431 TGCGAATTAATACTTGCTTTCTTTG 57.205 32.000 0.00 0.00 0.00 2.77
2003 4593 7.990917 GGATCGATCCATATAGCGATACATAT 58.009 38.462 34.65 0.00 46.38 1.78
2123 4716 0.942410 GCTGCGTCACGTTGACCTTA 60.942 55.000 0.00 0.56 44.20 2.69
2222 4815 4.873129 CCCGTGCCGATGGTCGAG 62.873 72.222 0.22 0.00 43.74 4.04
2289 4882 4.162690 GGGGCCGCAGACGATTCT 62.163 66.667 16.21 0.00 43.93 2.40
2342 4947 2.573369 CAGATGGAAGAGGCAATCCTG 58.427 52.381 5.10 0.00 44.46 3.86
2422 5034 1.446907 CCACACTAGCCAAGAAGCAG 58.553 55.000 0.00 0.00 34.23 4.24
2695 5363 5.103000 CGATCTTCGTAGAACTGGTTGATT 58.897 41.667 0.00 0.00 45.90 2.57
2722 5390 3.376546 AGAGTACCGTATTTGAGACGTCC 59.623 47.826 13.01 4.42 38.65 4.79
2771 5439 7.698550 CCACACATACAGAAGTATATAGATCGC 59.301 40.741 0.00 0.00 38.88 4.58
2908 5631 2.987547 TCGACGGCCGTCTTTCCT 60.988 61.111 44.83 19.25 42.54 3.36
3122 5854 0.108138 AGGTGCTAACTGCTAAGCCG 60.108 55.000 0.00 0.00 43.37 5.52
3159 5891 2.370519 TGGGTTCCCATCCATATACACG 59.629 50.000 6.46 0.00 0.00 4.49
3173 5905 2.798148 CTAGGCACACCGTGGGTTCC 62.798 65.000 2.00 0.00 42.76 3.62
3178 5910 0.530650 CATAGCTAGGCACACCGTGG 60.531 60.000 3.03 0.00 42.76 4.94
3187 5919 1.947760 GCTTGCAGCATAGCTAGGC 59.052 57.895 22.35 22.35 41.89 3.93
3226 5958 7.737972 TGCAGTAAAGCTTTCACAGTAATAA 57.262 32.000 16.57 0.00 34.99 1.40
3227 5959 7.094805 CCTTGCAGTAAAGCTTTCACAGTAATA 60.095 37.037 16.57 0.00 34.99 0.98
3228 5960 6.294176 CCTTGCAGTAAAGCTTTCACAGTAAT 60.294 38.462 16.57 0.00 34.99 1.89
3293 6027 3.254166 TGCTCAACAAAATTCTGCTCTCC 59.746 43.478 0.00 0.00 0.00 3.71
3302 6036 3.214328 ACCTCTCGTGCTCAACAAAATT 58.786 40.909 0.00 0.00 0.00 1.82
3330 6064 8.773033 AACCAGCATTATTCCATTTTCTATCT 57.227 30.769 0.00 0.00 0.00 1.98
3398 6132 4.660789 AGAGTAATGCATTCAAATGGGC 57.339 40.909 16.86 0.00 36.90 5.36
3408 6172 5.128919 CCTTTGAGCCTTAGAGTAATGCAT 58.871 41.667 0.00 0.00 32.64 3.96
3419 6183 2.373836 TGTAACTGCCCTTTGAGCCTTA 59.626 45.455 0.00 0.00 0.00 2.69
3441 6205 0.108424 CCTCCCGCTCTCAGAAACTG 60.108 60.000 0.00 0.00 0.00 3.16
3448 6212 1.859841 TACCTCACCTCCCGCTCTCA 61.860 60.000 0.00 0.00 0.00 3.27
3546 6345 5.253330 TGTGACCCACTATCAAAGGATTTC 58.747 41.667 0.00 0.00 33.30 2.17
3563 6362 2.543777 TCAACCAGTTAGCTGTGACC 57.456 50.000 5.81 0.00 41.02 4.02
3570 6369 4.072131 TCCATCTGTTTCAACCAGTTAGC 58.928 43.478 0.00 0.00 0.00 3.09
3574 6373 5.630121 TGTTATCCATCTGTTTCAACCAGT 58.370 37.500 0.00 0.00 0.00 4.00
3579 6378 5.357878 GCCTCATGTTATCCATCTGTTTCAA 59.642 40.000 0.00 0.00 0.00 2.69
3609 6408 6.987404 GGGTTTTAGCTTCAGAACCTAGATAG 59.013 42.308 15.36 0.00 40.98 2.08
3675 6474 3.163594 CGCTAGTTTTTCATTTCCGCAG 58.836 45.455 0.00 0.00 0.00 5.18
3779 6578 6.973474 TGGTTCCACAAAAATAGTACAAAACG 59.027 34.615 0.00 0.00 0.00 3.60
3806 7810 5.319453 AGATGGCATGTTCCTATACAATGG 58.681 41.667 3.81 0.00 0.00 3.16
3811 7815 5.939883 TGCAATAGATGGCATGTTCCTATAC 59.060 40.000 3.81 2.85 34.58 1.47


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.