Multiple sequence alignment - TraesCS2B01G422800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G422800 chr2B 100.000 5773 0 0 1 5773 608362197 608367969 0.000000e+00 10661.0
1 TraesCS2B01G422800 chr2B 87.330 442 44 8 2079 2509 608364054 608364494 4.020000e-136 496.0
2 TraesCS2B01G422800 chr2B 87.330 442 44 8 1858 2298 608364275 608364705 4.020000e-136 496.0
3 TraesCS2B01G422800 chr2B 94.470 217 12 0 2 218 717008447 717008663 9.270000e-88 335.0
4 TraesCS2B01G422800 chr2D 94.411 2970 95 33 2828 5773 516650626 516653548 0.000000e+00 4499.0
5 TraesCS2B01G422800 chr2D 92.977 2093 91 24 219 2301 516648270 516650316 0.000000e+00 3000.0
6 TraesCS2B01G422800 chr2D 83.311 755 52 25 2079 2786 516649898 516650625 3.800000e-176 628.0
7 TraesCS2B01G422800 chr2D 92.500 40 3 0 2557 2596 309065598 309065559 2.250000e-04 58.4
8 TraesCS2B01G422800 chr2A 93.856 2132 71 25 3159 5287 660503980 660506054 0.000000e+00 3157.0
9 TraesCS2B01G422800 chr2A 90.043 1627 71 41 706 2301 660501463 660503029 0.000000e+00 2023.0
10 TraesCS2B01G422800 chr2A 84.780 887 52 26 2079 2908 660502600 660503460 0.000000e+00 813.0
11 TraesCS2B01G422800 chr2A 87.731 432 25 11 250 655 660500736 660501165 4.050000e-131 479.0
12 TraesCS2B01G422800 chr2A 91.829 257 17 4 5510 5766 660506060 660506312 7.110000e-94 355.0
13 TraesCS2B01G422800 chr2A 93.750 208 12 1 2907 3113 660503778 660503985 1.560000e-80 311.0
14 TraesCS2B01G422800 chr2A 92.090 177 12 2 2907 3081 660503555 660503731 1.240000e-61 248.0
15 TraesCS2B01G422800 chr2A 87.333 150 16 3 3116 3262 660503807 660503956 9.950000e-38 169.0
16 TraesCS2B01G422800 chr2A 87.943 141 12 5 3116 3251 660503584 660503724 1.660000e-35 161.0
17 TraesCS2B01G422800 chr2A 100.000 35 0 0 2549 2583 776163131 776163165 1.340000e-06 65.8
18 TraesCS2B01G422800 chr6A 87.097 434 52 2 3813 4246 603942319 603941890 6.720000e-134 488.0
19 TraesCS2B01G422800 chr6A 82.873 362 47 10 1726 2075 603945298 603944940 1.560000e-80 311.0
20 TraesCS2B01G422800 chr6A 85.057 261 31 5 3491 3748 603942745 603942490 5.740000e-65 259.0
21 TraesCS2B01G422800 chr6A 80.657 274 31 10 3116 3388 603944641 603944389 5.900000e-45 193.0
22 TraesCS2B01G422800 chr4A 97.717 219 5 0 2 220 146045405 146045623 1.520000e-100 377.0
23 TraesCS2B01G422800 chr1B 80.279 502 76 11 3258 3748 44936456 44935967 1.980000e-94 357.0
24 TraesCS2B01G422800 chr1B 86.885 122 12 3 3116 3234 650268135 650268255 3.630000e-27 134.0
25 TraesCS2B01G422800 chr1B 78.704 216 24 13 2079 2274 44936669 44936456 2.180000e-24 124.0
26 TraesCS2B01G422800 chr1B 78.070 228 29 6 3159 3369 48489702 48489479 2.180000e-24 124.0
27 TraesCS2B01G422800 chr5B 93.607 219 14 0 2 220 426595357 426595575 1.550000e-85 327.0
28 TraesCS2B01G422800 chr3B 92.727 220 16 0 2 221 161140523 161140304 9.330000e-83 318.0
29 TraesCS2B01G422800 chr3B 92.661 218 16 0 2 219 221752630 221752847 1.210000e-81 315.0
30 TraesCS2B01G422800 chr3B 92.130 216 16 1 4 218 641673122 641673337 2.610000e-78 303.0
31 TraesCS2B01G422800 chr7B 92.661 218 16 0 2 219 641594929 641595146 1.210000e-81 315.0
32 TraesCS2B01G422800 chr5D 92.202 218 16 1 2 218 47012751 47012968 2.020000e-79 307.0
33 TraesCS2B01G422800 chr5D 95.652 46 2 0 2556 2601 215255192 215255147 2.230000e-09 75.0
34 TraesCS2B01G422800 chr7D 91.743 218 18 0 2 219 45285280 45285497 2.610000e-78 303.0
35 TraesCS2B01G422800 chr7D 90.385 52 5 0 2550 2601 167525871 167525820 1.040000e-07 69.4
36 TraesCS2B01G422800 chr5A 81.137 387 58 10 1677 2048 655036664 655037050 4.370000e-76 296.0
37 TraesCS2B01G422800 chr3A 90.741 54 5 0 2550 2603 202594301 202594248 8.020000e-09 73.1
38 TraesCS2B01G422800 chr4B 85.075 67 9 1 2550 2615 621511637 621511703 3.730000e-07 67.6
39 TraesCS2B01G422800 chr4D 96.970 33 1 0 2554 2586 504324948 504324980 8.080000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G422800 chr2B 608362197 608367969 5772 False 3884.333333 10661 91.553333 1 5773 3 chr2B.!!$F2 5772
1 TraesCS2B01G422800 chr2D 516648270 516653548 5278 False 2709.000000 4499 90.233000 219 5773 3 chr2D.!!$F1 5554
2 TraesCS2B01G422800 chr2A 660500736 660506312 5576 False 857.333333 3157 89.928333 250 5766 9 chr2A.!!$F2 5516
3 TraesCS2B01G422800 chr6A 603941890 603945298 3408 True 312.750000 488 83.921000 1726 4246 4 chr6A.!!$R1 2520
4 TraesCS2B01G422800 chr1B 44935967 44936669 702 True 240.500000 357 79.491500 2079 3748 2 chr1B.!!$R2 1669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
854 1137 0.035176 GCTCCTCCTCTGCATCCATC 59.965 60.000 0.00 0.00 0.00 3.51 F
886 1186 0.107945 CTGCTGAGTTCCTAGCCCAC 60.108 60.000 0.00 0.00 39.15 4.61 F
2024 2347 0.114168 AGGTAGGCCCATGCAAACAA 59.886 50.000 0.00 0.00 40.13 2.83 F
2555 2880 0.239347 GACGCTCAAATGCAGTGCTT 59.761 50.000 17.60 7.26 0.00 3.91 F
2714 3076 0.970427 GGGACAACGGGCCAATGAAT 60.970 55.000 4.39 0.00 0.00 2.57 F
3797 6137 1.000274 GCTTTCCAACCGCAGATGTTT 60.000 47.619 0.00 0.00 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2004 2327 0.114168 TGTTTGCATGGGCCTACCTT 59.886 50.000 4.53 0.0 41.11 3.50 R
2630 2955 0.243907 GCTCACGGCACTTAGAGTCA 59.756 55.000 0.00 0.0 41.35 3.41 R
3146 3847 0.097674 GGCACAAACTGCTATCGCTG 59.902 55.000 0.00 0.0 46.25 5.18 R
4235 6590 1.667212 CAGCAGCGATTGATAGCACAA 59.333 47.619 0.00 0.0 35.48 3.33 R
4283 6638 4.520111 AGCTGATCTCTAGTGTATCTGCTG 59.480 45.833 22.35 0.0 46.59 4.41 R
5027 7383 0.190815 ACCCCTCTTGGCCACAAATT 59.809 50.000 3.88 0.0 35.89 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.256461 GCGCACAAAGCAAGGGAG 59.744 61.111 0.30 0.00 46.13 4.30
18 19 2.555547 GCGCACAAAGCAAGGGAGT 61.556 57.895 0.30 0.00 46.13 3.85
19 20 1.234615 GCGCACAAAGCAAGGGAGTA 61.235 55.000 0.30 0.00 46.13 2.59
20 21 1.453155 CGCACAAAGCAAGGGAGTAT 58.547 50.000 0.00 0.00 46.13 2.12
21 22 1.812571 CGCACAAAGCAAGGGAGTATT 59.187 47.619 0.00 0.00 46.13 1.89
22 23 2.159517 CGCACAAAGCAAGGGAGTATTC 60.160 50.000 0.00 0.00 46.13 1.75
23 24 3.084786 GCACAAAGCAAGGGAGTATTCT 58.915 45.455 0.00 0.00 44.79 2.40
24 25 3.119708 GCACAAAGCAAGGGAGTATTCTG 60.120 47.826 0.00 0.00 44.79 3.02
25 26 3.084786 ACAAAGCAAGGGAGTATTCTGC 58.915 45.455 0.00 0.00 0.00 4.26
26 27 3.084039 CAAAGCAAGGGAGTATTCTGCA 58.916 45.455 1.70 0.00 33.59 4.41
27 28 3.439857 AAGCAAGGGAGTATTCTGCAA 57.560 42.857 0.00 0.00 33.59 4.08
28 29 3.439857 AGCAAGGGAGTATTCTGCAAA 57.560 42.857 0.00 0.00 33.59 3.68
29 30 3.766545 AGCAAGGGAGTATTCTGCAAAA 58.233 40.909 0.00 0.00 33.59 2.44
30 31 4.151883 AGCAAGGGAGTATTCTGCAAAAA 58.848 39.130 0.00 0.00 33.59 1.94
47 48 2.584492 AAAACTTGCCACTTCAGCAC 57.416 45.000 0.00 0.00 40.69 4.40
48 49 0.746659 AAACTTGCCACTTCAGCACC 59.253 50.000 0.00 0.00 40.69 5.01
49 50 1.109323 AACTTGCCACTTCAGCACCC 61.109 55.000 0.00 0.00 40.69 4.61
50 51 2.594303 TTGCCACTTCAGCACCCG 60.594 61.111 0.00 0.00 40.69 5.28
51 52 3.113514 TTGCCACTTCAGCACCCGA 62.114 57.895 0.00 0.00 40.69 5.14
52 53 3.050275 GCCACTTCAGCACCCGAC 61.050 66.667 0.00 0.00 0.00 4.79
53 54 2.425592 CCACTTCAGCACCCGACA 59.574 61.111 0.00 0.00 0.00 4.35
54 55 1.669115 CCACTTCAGCACCCGACAG 60.669 63.158 0.00 0.00 0.00 3.51
55 56 1.669115 CACTTCAGCACCCGACAGG 60.669 63.158 0.00 0.00 43.78 4.00
56 57 2.743928 CTTCAGCACCCGACAGGC 60.744 66.667 0.00 0.00 40.58 4.85
57 58 4.680237 TTCAGCACCCGACAGGCG 62.680 66.667 0.00 0.00 40.58 5.52
73 74 3.636231 CGGGCCCAACCAGTCAGA 61.636 66.667 24.92 0.00 42.05 3.27
74 75 2.971598 CGGGCCCAACCAGTCAGAT 61.972 63.158 24.92 0.00 42.05 2.90
75 76 1.384191 GGGCCCAACCAGTCAGATT 59.616 57.895 19.95 0.00 42.05 2.40
76 77 0.681243 GGGCCCAACCAGTCAGATTC 60.681 60.000 19.95 0.00 42.05 2.52
77 78 0.681243 GGCCCAACCAGTCAGATTCC 60.681 60.000 0.00 0.00 38.86 3.01
78 79 0.681243 GCCCAACCAGTCAGATTCCC 60.681 60.000 0.00 0.00 0.00 3.97
79 80 0.995024 CCCAACCAGTCAGATTCCCT 59.005 55.000 0.00 0.00 0.00 4.20
80 81 1.340405 CCCAACCAGTCAGATTCCCTG 60.340 57.143 0.00 0.00 44.27 4.45
81 82 1.352352 CCAACCAGTCAGATTCCCTGT 59.648 52.381 0.00 0.00 43.38 4.00
82 83 2.616510 CCAACCAGTCAGATTCCCTGTC 60.617 54.545 0.00 0.00 43.38 3.51
83 84 2.030027 ACCAGTCAGATTCCCTGTCA 57.970 50.000 0.00 0.00 43.38 3.58
84 85 2.338809 ACCAGTCAGATTCCCTGTCAA 58.661 47.619 0.00 0.00 43.38 3.18
85 86 2.915604 ACCAGTCAGATTCCCTGTCAAT 59.084 45.455 0.00 0.00 43.38 2.57
86 87 4.104086 ACCAGTCAGATTCCCTGTCAATA 58.896 43.478 0.00 0.00 43.38 1.90
87 88 4.080863 ACCAGTCAGATTCCCTGTCAATAC 60.081 45.833 0.00 0.00 43.38 1.89
88 89 4.080919 CCAGTCAGATTCCCTGTCAATACA 60.081 45.833 0.00 0.00 43.38 2.29
89 90 5.397221 CCAGTCAGATTCCCTGTCAATACAT 60.397 44.000 0.00 0.00 43.38 2.29
90 91 6.183361 CCAGTCAGATTCCCTGTCAATACATA 60.183 42.308 0.00 0.00 43.38 2.29
91 92 7.448420 CAGTCAGATTCCCTGTCAATACATAT 58.552 38.462 0.00 0.00 43.38 1.78
92 93 8.588472 CAGTCAGATTCCCTGTCAATACATATA 58.412 37.037 0.00 0.00 43.38 0.86
93 94 9.159254 AGTCAGATTCCCTGTCAATACATATAA 57.841 33.333 0.00 0.00 43.38 0.98
94 95 9.778741 GTCAGATTCCCTGTCAATACATATAAA 57.221 33.333 0.00 0.00 43.38 1.40
95 96 9.778741 TCAGATTCCCTGTCAATACATATAAAC 57.221 33.333 0.00 0.00 43.38 2.01
96 97 9.784531 CAGATTCCCTGTCAATACATATAAACT 57.215 33.333 0.00 0.00 38.10 2.66
97 98 9.784531 AGATTCCCTGTCAATACATATAAACTG 57.215 33.333 0.00 0.00 34.37 3.16
98 99 7.801716 TTCCCTGTCAATACATATAAACTGC 57.198 36.000 0.00 0.00 34.37 4.40
99 100 6.894682 TCCCTGTCAATACATATAAACTGCA 58.105 36.000 0.00 0.00 34.37 4.41
100 101 6.992123 TCCCTGTCAATACATATAAACTGCAG 59.008 38.462 13.48 13.48 34.37 4.41
101 102 6.767902 CCCTGTCAATACATATAAACTGCAGT 59.232 38.462 15.25 15.25 34.37 4.40
102 103 7.283127 CCCTGTCAATACATATAAACTGCAGTT 59.717 37.037 26.36 26.36 35.81 3.16
103 104 8.677300 CCTGTCAATACATATAAACTGCAGTTT 58.323 33.333 38.59 38.59 41.87 2.66
127 128 2.801421 TTTTTGCAACGCCTCGCA 59.199 50.000 0.00 0.00 36.05 5.10
128 129 1.587613 TTTTTGCAACGCCTCGCAC 60.588 52.632 0.00 0.00 38.00 5.34
129 130 2.945398 TTTTTGCAACGCCTCGCACC 62.945 55.000 0.00 0.00 38.00 5.01
132 133 3.959975 GCAACGCCTCGCACCAAA 61.960 61.111 0.00 0.00 0.00 3.28
133 134 2.252260 CAACGCCTCGCACCAAAG 59.748 61.111 0.00 0.00 0.00 2.77
134 135 2.203153 AACGCCTCGCACCAAAGT 60.203 55.556 0.00 0.00 0.00 2.66
135 136 1.822186 AACGCCTCGCACCAAAGTT 60.822 52.632 0.00 0.00 0.00 2.66
136 137 2.058829 AACGCCTCGCACCAAAGTTG 62.059 55.000 0.00 0.00 0.00 3.16
148 149 2.557317 CCAAAGTTGGTACTGACACGT 58.443 47.619 1.63 0.00 43.43 4.49
149 150 3.719924 CCAAAGTTGGTACTGACACGTA 58.280 45.455 1.63 0.00 43.43 3.57
150 151 4.121317 CCAAAGTTGGTACTGACACGTAA 58.879 43.478 1.63 0.00 43.43 3.18
151 152 4.571580 CCAAAGTTGGTACTGACACGTAAA 59.428 41.667 1.63 0.00 43.43 2.01
152 153 5.064962 CCAAAGTTGGTACTGACACGTAAAA 59.935 40.000 1.63 0.00 43.43 1.52
153 154 6.403418 CCAAAGTTGGTACTGACACGTAAAAA 60.403 38.462 1.63 0.00 43.43 1.94
154 155 6.930667 AAGTTGGTACTGACACGTAAAAAT 57.069 33.333 0.00 0.00 34.01 1.82
155 156 6.930667 AGTTGGTACTGACACGTAAAAATT 57.069 33.333 0.00 0.00 31.99 1.82
156 157 8.436046 AAGTTGGTACTGACACGTAAAAATTA 57.564 30.769 0.00 0.00 34.01 1.40
157 158 7.854534 AGTTGGTACTGACACGTAAAAATTAC 58.145 34.615 0.00 0.00 31.99 1.89
158 159 6.783892 TGGTACTGACACGTAAAAATTACC 57.216 37.500 0.00 0.00 0.00 2.85
159 160 6.286758 TGGTACTGACACGTAAAAATTACCA 58.713 36.000 9.05 9.05 35.26 3.25
160 161 6.765036 TGGTACTGACACGTAAAAATTACCAA 59.235 34.615 10.19 0.00 34.82 3.67
161 162 7.444792 TGGTACTGACACGTAAAAATTACCAAT 59.555 33.333 10.19 0.00 34.82 3.16
162 163 7.959109 GGTACTGACACGTAAAAATTACCAATC 59.041 37.037 0.00 0.00 0.00 2.67
163 164 7.739498 ACTGACACGTAAAAATTACCAATCT 57.261 32.000 0.00 0.00 0.00 2.40
164 165 8.161699 ACTGACACGTAAAAATTACCAATCTT 57.838 30.769 0.00 0.00 0.00 2.40
165 166 8.073768 ACTGACACGTAAAAATTACCAATCTTG 58.926 33.333 0.00 0.00 0.00 3.02
166 167 8.155821 TGACACGTAAAAATTACCAATCTTGA 57.844 30.769 0.00 0.00 0.00 3.02
167 168 8.788806 TGACACGTAAAAATTACCAATCTTGAT 58.211 29.630 0.00 0.00 0.00 2.57
178 179 9.584008 AATTACCAATCTTGATATCAATCTGCT 57.416 29.630 18.26 6.61 35.02 4.24
179 180 8.985315 TTACCAATCTTGATATCAATCTGCTT 57.015 30.769 18.26 2.97 35.02 3.91
180 181 7.893124 ACCAATCTTGATATCAATCTGCTTT 57.107 32.000 18.26 4.28 35.02 3.51
181 182 7.938715 ACCAATCTTGATATCAATCTGCTTTC 58.061 34.615 18.26 0.00 35.02 2.62
182 183 7.558807 ACCAATCTTGATATCAATCTGCTTTCA 59.441 33.333 18.26 0.00 35.02 2.69
183 184 8.410912 CCAATCTTGATATCAATCTGCTTTCAA 58.589 33.333 18.26 0.00 35.02 2.69
184 185 9.967346 CAATCTTGATATCAATCTGCTTTCAAT 57.033 29.630 18.26 0.00 35.02 2.57
185 186 9.967346 AATCTTGATATCAATCTGCTTTCAATG 57.033 29.630 18.26 2.81 35.02 2.82
186 187 7.423199 TCTTGATATCAATCTGCTTTCAATGC 58.577 34.615 18.26 0.00 35.02 3.56
187 188 6.080648 TGATATCAATCTGCTTTCAATGCC 57.919 37.500 1.98 0.00 32.93 4.40
188 189 3.814005 ATCAATCTGCTTTCAATGCCC 57.186 42.857 0.00 0.00 0.00 5.36
189 190 1.826720 TCAATCTGCTTTCAATGCCCC 59.173 47.619 0.00 0.00 0.00 5.80
190 191 1.551430 CAATCTGCTTTCAATGCCCCA 59.449 47.619 0.00 0.00 0.00 4.96
191 192 1.941377 ATCTGCTTTCAATGCCCCAA 58.059 45.000 0.00 0.00 0.00 4.12
192 193 1.941377 TCTGCTTTCAATGCCCCAAT 58.059 45.000 0.00 0.00 0.00 3.16
193 194 2.259012 TCTGCTTTCAATGCCCCAATT 58.741 42.857 0.00 0.00 0.00 2.32
194 195 2.027929 TCTGCTTTCAATGCCCCAATTG 60.028 45.455 0.00 0.00 38.63 2.32
195 196 1.698532 TGCTTTCAATGCCCCAATTGT 59.301 42.857 4.43 0.00 38.46 2.71
196 197 2.078392 GCTTTCAATGCCCCAATTGTG 58.922 47.619 4.43 0.00 38.46 3.33
197 198 2.702261 CTTTCAATGCCCCAATTGTGG 58.298 47.619 2.04 2.04 45.53 4.17
198 199 1.727062 TTCAATGCCCCAATTGTGGT 58.273 45.000 8.84 0.00 44.30 4.16
199 200 2.612285 TCAATGCCCCAATTGTGGTA 57.388 45.000 8.84 4.38 44.30 3.25
200 201 2.175202 TCAATGCCCCAATTGTGGTAC 58.825 47.619 8.84 3.30 44.30 3.34
201 202 2.178580 CAATGCCCCAATTGTGGTACT 58.821 47.619 8.84 0.00 44.30 2.73
202 203 2.143876 ATGCCCCAATTGTGGTACTC 57.856 50.000 8.84 0.00 44.30 2.59
203 204 0.039035 TGCCCCAATTGTGGTACTCC 59.961 55.000 8.84 0.00 44.30 3.85
204 205 0.331616 GCCCCAATTGTGGTACTCCT 59.668 55.000 8.84 0.00 44.30 3.69
205 206 1.955208 GCCCCAATTGTGGTACTCCTG 60.955 57.143 8.84 0.00 44.30 3.86
206 207 1.354368 CCCCAATTGTGGTACTCCTGT 59.646 52.381 4.43 0.00 44.30 4.00
207 208 2.436417 CCCAATTGTGGTACTCCTGTG 58.564 52.381 4.43 0.00 44.30 3.66
208 209 1.812571 CCAATTGTGGTACTCCTGTGC 59.187 52.381 4.43 0.00 40.42 4.57
209 210 2.503331 CAATTGTGGTACTCCTGTGCA 58.497 47.619 0.00 0.00 34.23 4.57
210 211 2.884012 CAATTGTGGTACTCCTGTGCAA 59.116 45.455 0.00 0.00 34.23 4.08
211 212 2.949177 TTGTGGTACTCCTGTGCAAT 57.051 45.000 0.00 0.00 34.23 3.56
212 213 2.949177 TGTGGTACTCCTGTGCAATT 57.051 45.000 0.00 0.00 34.23 2.32
213 214 3.222173 TGTGGTACTCCTGTGCAATTT 57.778 42.857 0.00 0.00 34.23 1.82
214 215 4.359434 TGTGGTACTCCTGTGCAATTTA 57.641 40.909 0.00 0.00 34.23 1.40
215 216 4.069304 TGTGGTACTCCTGTGCAATTTAC 58.931 43.478 0.00 0.00 34.23 2.01
216 217 4.202419 TGTGGTACTCCTGTGCAATTTACT 60.202 41.667 0.00 0.00 34.23 2.24
217 218 4.392138 GTGGTACTCCTGTGCAATTTACTC 59.608 45.833 0.00 0.00 34.23 2.59
218 219 3.939592 GGTACTCCTGTGCAATTTACTCC 59.060 47.826 0.00 0.00 0.00 3.85
219 220 3.788227 ACTCCTGTGCAATTTACTCCA 57.212 42.857 0.00 0.00 0.00 3.86
220 221 3.412386 ACTCCTGTGCAATTTACTCCAC 58.588 45.455 0.00 0.00 0.00 4.02
221 222 3.181445 ACTCCTGTGCAATTTACTCCACA 60.181 43.478 0.00 0.00 36.80 4.17
259 260 1.174078 TCGTGTGGTTACTCGCTCCA 61.174 55.000 0.00 0.00 41.95 3.86
518 538 3.708544 CGTTGGCCCCCTTCCGTA 61.709 66.667 0.00 0.00 0.00 4.02
664 693 6.184706 GGAACAAAAAGAAAACAAATCGCTG 58.815 36.000 0.00 0.00 0.00 5.18
769 1045 1.034838 CGGTCAGAGAGAGTGAGGGG 61.035 65.000 0.00 0.00 0.00 4.79
770 1046 0.333312 GGTCAGAGAGAGTGAGGGGA 59.667 60.000 0.00 0.00 0.00 4.81
774 1050 1.760480 GAGAGAGTGAGGGGAGGGC 60.760 68.421 0.00 0.00 0.00 5.19
849 1132 3.859414 GCCGCTCCTCCTCTGCAT 61.859 66.667 0.00 0.00 0.00 3.96
850 1133 2.420890 CCGCTCCTCCTCTGCATC 59.579 66.667 0.00 0.00 0.00 3.91
851 1134 2.420890 CGCTCCTCCTCTGCATCC 59.579 66.667 0.00 0.00 0.00 3.51
852 1135 2.429767 CGCTCCTCCTCTGCATCCA 61.430 63.158 0.00 0.00 0.00 3.41
853 1136 1.756408 CGCTCCTCCTCTGCATCCAT 61.756 60.000 0.00 0.00 0.00 3.41
854 1137 0.035176 GCTCCTCCTCTGCATCCATC 59.965 60.000 0.00 0.00 0.00 3.51
855 1138 1.719529 CTCCTCCTCTGCATCCATCT 58.280 55.000 0.00 0.00 0.00 2.90
885 1185 1.903877 GCTGCTGAGTTCCTAGCCCA 61.904 60.000 0.00 0.00 39.15 5.36
886 1186 0.107945 CTGCTGAGTTCCTAGCCCAC 60.108 60.000 0.00 0.00 39.15 4.61
887 1187 1.222113 GCTGAGTTCCTAGCCCACC 59.778 63.158 0.00 0.00 33.89 4.61
888 1188 1.908483 CTGAGTTCCTAGCCCACCC 59.092 63.158 0.00 0.00 0.00 4.61
889 1189 1.615424 TGAGTTCCTAGCCCACCCC 60.615 63.158 0.00 0.00 0.00 4.95
890 1190 1.307084 GAGTTCCTAGCCCACCCCT 60.307 63.158 0.00 0.00 0.00 4.79
891 1191 1.307084 AGTTCCTAGCCCACCCCTC 60.307 63.158 0.00 0.00 0.00 4.30
892 1192 2.365105 TTCCTAGCCCACCCCTCG 60.365 66.667 0.00 0.00 0.00 4.63
914 1214 1.449601 CGGATCGGACAACCAAGGG 60.450 63.158 0.00 0.00 35.59 3.95
915 1215 1.749258 GGATCGGACAACCAAGGGC 60.749 63.158 0.00 0.00 35.59 5.19
1062 1368 3.209812 CGACGGCGATGGAGAGGA 61.210 66.667 16.62 0.00 40.82 3.71
1306 1614 2.158593 TGCTAGAGTAATCTCCTCGCCT 60.159 50.000 0.00 0.00 41.26 5.52
1494 1807 1.134521 TGTGCTCTCACGTTTCTTGGT 60.135 47.619 0.00 0.00 46.01 3.67
1499 1812 0.868406 CTCACGTTTCTTGGTGCCTC 59.132 55.000 0.00 0.00 34.20 4.70
1500 1813 0.468226 TCACGTTTCTTGGTGCCTCT 59.532 50.000 0.00 0.00 34.20 3.69
1638 1951 1.146930 CCCATCCTGGATGACACCG 59.853 63.158 33.02 17.97 42.09 4.94
1639 1952 1.524621 CCATCCTGGATGACACCGC 60.525 63.158 33.02 0.00 42.09 5.68
1640 1953 1.524002 CATCCTGGATGACACCGCT 59.476 57.895 28.81 0.00 42.09 5.52
1655 1968 1.082679 CCGCTGCTGACACTGATGAG 61.083 60.000 0.00 0.00 0.00 2.90
1694 2007 5.163884 CGACGACGATACTGACATGGTATAT 60.164 44.000 0.00 0.00 42.66 0.86
1702 2015 9.833182 CGATACTGACATGGTATATATATGCTC 57.167 37.037 10.21 1.86 31.03 4.26
1832 2145 0.873312 CTCATGGACATCGACAGCGG 60.873 60.000 0.00 0.00 38.28 5.52
1839 2152 3.134792 ATCGACAGCGGCGACTCT 61.135 61.111 12.98 0.00 40.94 3.24
1989 2312 8.334263 TGTTGCATTTTCTATGACTGACATTA 57.666 30.769 0.00 0.00 40.07 1.90
1996 2319 8.791327 TTTTCTATGACTGACATTATGCTTGA 57.209 30.769 0.00 0.00 40.07 3.02
1997 2320 8.791327 TTTCTATGACTGACATTATGCTTGAA 57.209 30.769 0.00 0.00 40.07 2.69
1998 2321 8.969260 TTCTATGACTGACATTATGCTTGAAT 57.031 30.769 0.00 0.00 40.07 2.57
1999 2322 8.374327 TCTATGACTGACATTATGCTTGAATG 57.626 34.615 0.00 4.80 40.07 2.67
2000 2323 8.206189 TCTATGACTGACATTATGCTTGAATGA 58.794 33.333 11.24 0.00 40.07 2.57
2001 2324 7.634671 ATGACTGACATTATGCTTGAATGAA 57.365 32.000 11.24 1.54 37.65 2.57
2002 2325 7.634671 TGACTGACATTATGCTTGAATGAAT 57.365 32.000 11.24 0.00 37.65 2.57
2003 2326 8.058667 TGACTGACATTATGCTTGAATGAATT 57.941 30.769 11.24 0.00 37.65 2.17
2004 2327 9.176460 TGACTGACATTATGCTTGAATGAATTA 57.824 29.630 11.24 0.00 37.65 1.40
2007 2330 9.459640 CTGACATTATGCTTGAATGAATTAAGG 57.540 33.333 11.24 0.00 37.65 2.69
2008 2331 8.970020 TGACATTATGCTTGAATGAATTAAGGT 58.030 29.630 11.24 0.00 37.65 3.50
2011 2334 9.903682 CATTATGCTTGAATGAATTAAGGTAGG 57.096 33.333 1.03 0.00 36.57 3.18
2012 2335 5.835113 TGCTTGAATGAATTAAGGTAGGC 57.165 39.130 0.00 0.00 0.00 3.93
2013 2336 4.644685 TGCTTGAATGAATTAAGGTAGGCC 59.355 41.667 0.00 0.00 0.00 5.19
2015 2338 4.871871 TGAATGAATTAAGGTAGGCCCA 57.128 40.909 0.00 0.00 34.66 5.36
2016 2339 5.402054 TGAATGAATTAAGGTAGGCCCAT 57.598 39.130 0.00 0.00 34.66 4.00
2017 2340 5.139727 TGAATGAATTAAGGTAGGCCCATG 58.860 41.667 0.00 0.00 34.66 3.66
2018 2341 2.944129 TGAATTAAGGTAGGCCCATGC 58.056 47.619 0.00 0.00 34.66 4.06
2019 2342 2.243478 TGAATTAAGGTAGGCCCATGCA 59.757 45.455 0.00 0.00 40.13 3.96
2020 2343 3.295973 GAATTAAGGTAGGCCCATGCAA 58.704 45.455 0.00 0.00 40.13 4.08
2022 2345 2.137810 TAAGGTAGGCCCATGCAAAC 57.862 50.000 0.00 0.00 40.13 2.93
2024 2347 0.114168 AGGTAGGCCCATGCAAACAA 59.886 50.000 0.00 0.00 40.13 2.83
2027 2350 2.027285 GGTAGGCCCATGCAAACAAAAT 60.027 45.455 0.00 0.00 40.13 1.82
2029 2352 4.323104 GGTAGGCCCATGCAAACAAAATAA 60.323 41.667 0.00 0.00 40.13 1.40
2031 2354 4.920999 AGGCCCATGCAAACAAAATAAAT 58.079 34.783 0.00 0.00 40.13 1.40
2032 2355 4.701171 AGGCCCATGCAAACAAAATAAATG 59.299 37.500 0.00 0.00 40.13 2.32
2033 2356 4.699257 GGCCCATGCAAACAAAATAAATGA 59.301 37.500 0.00 0.00 40.13 2.57
2034 2357 5.182760 GGCCCATGCAAACAAAATAAATGAA 59.817 36.000 0.00 0.00 40.13 2.57
2035 2358 6.127675 GGCCCATGCAAACAAAATAAATGAAT 60.128 34.615 0.00 0.00 40.13 2.57
2036 2359 7.314393 GCCCATGCAAACAAAATAAATGAATT 58.686 30.769 0.00 0.00 37.47 2.17
2038 2361 9.130312 CCCATGCAAACAAAATAAATGAATTTG 57.870 29.630 0.00 0.00 39.38 2.32
2039 2362 9.894783 CCATGCAAACAAAATAAATGAATTTGA 57.105 25.926 0.00 0.00 37.46 2.69
2041 2364 9.896263 ATGCAAACAAAATAAATGAATTTGACC 57.104 25.926 0.00 0.00 37.46 4.02
2042 2365 8.896744 TGCAAACAAAATAAATGAATTTGACCA 58.103 25.926 4.65 0.00 37.46 4.02
2043 2366 9.384682 GCAAACAAAATAAATGAATTTGACCAG 57.615 29.630 4.65 0.00 37.46 4.00
2044 2367 9.881529 CAAACAAAATAAATGAATTTGACCAGG 57.118 29.630 4.65 0.00 37.46 4.45
2047 2370 9.657419 ACAAAATAAATGAATTTGACCAGGATC 57.343 29.630 0.00 0.00 37.46 3.36
2048 2371 9.101655 CAAAATAAATGAATTTGACCAGGATCC 57.898 33.333 2.48 2.48 36.41 3.36
2049 2372 8.613922 AAATAAATGAATTTGACCAGGATCCT 57.386 30.769 9.02 9.02 0.00 3.24
2052 2375 5.715439 ATGAATTTGACCAGGATCCTGTA 57.285 39.130 34.49 20.51 42.15 2.74
2053 2376 5.512942 TGAATTTGACCAGGATCCTGTAA 57.487 39.130 34.49 24.28 42.15 2.41
2054 2377 6.078456 TGAATTTGACCAGGATCCTGTAAT 57.922 37.500 34.49 24.40 42.15 1.89
2055 2378 6.122277 TGAATTTGACCAGGATCCTGTAATC 58.878 40.000 34.49 27.75 42.15 1.75
2056 2379 5.715439 ATTTGACCAGGATCCTGTAATCA 57.285 39.130 34.49 29.56 42.15 2.57
2057 2380 4.760530 TTGACCAGGATCCTGTAATCAG 57.239 45.455 34.49 22.51 42.15 2.90
2058 2381 2.435805 TGACCAGGATCCTGTAATCAGC 59.564 50.000 34.49 17.89 42.15 4.26
2059 2382 2.435805 GACCAGGATCCTGTAATCAGCA 59.564 50.000 34.49 0.00 42.15 4.41
2060 2383 2.171448 ACCAGGATCCTGTAATCAGCAC 59.829 50.000 34.49 0.00 42.15 4.40
2065 2388 4.080129 AGGATCCTGTAATCAGCACACATT 60.080 41.667 15.29 0.00 40.09 2.71
2066 2389 5.130975 AGGATCCTGTAATCAGCACACATTA 59.869 40.000 15.29 0.00 40.09 1.90
2067 2390 5.822519 GGATCCTGTAATCAGCACACATTAA 59.177 40.000 3.84 0.00 40.09 1.40
2069 2392 6.494893 TCCTGTAATCAGCACACATTAAAC 57.505 37.500 0.00 0.00 40.09 2.01
2071 2394 6.488344 TCCTGTAATCAGCACACATTAAACAA 59.512 34.615 0.00 0.00 40.09 2.83
2072 2395 7.176515 TCCTGTAATCAGCACACATTAAACAAT 59.823 33.333 0.00 0.00 40.09 2.71
2074 2397 9.838975 CTGTAATCAGCACACATTAAACAATAA 57.161 29.630 0.00 0.00 34.79 1.40
2132 2457 9.862371 GTTCTACAGAGAAAATGAAGTGATCTA 57.138 33.333 0.00 0.00 43.38 1.98
2136 2461 7.983307 ACAGAGAAAATGAAGTGATCTATTGC 58.017 34.615 0.00 0.00 0.00 3.56
2137 2462 7.066766 ACAGAGAAAATGAAGTGATCTATTGCC 59.933 37.037 0.00 0.00 0.00 4.52
2138 2463 6.545298 AGAGAAAATGAAGTGATCTATTGCCC 59.455 38.462 0.00 0.00 0.00 5.36
2139 2464 6.189859 AGAAAATGAAGTGATCTATTGCCCA 58.810 36.000 0.00 0.00 0.00 5.36
2141 2466 7.343833 AGAAAATGAAGTGATCTATTGCCCATT 59.656 33.333 0.00 0.00 0.00 3.16
2142 2467 8.537728 AAAATGAAGTGATCTATTGCCCATTA 57.462 30.769 0.00 0.00 0.00 1.90
2143 2468 7.756395 AATGAAGTGATCTATTGCCCATTAG 57.244 36.000 0.00 0.00 0.00 1.73
2144 2469 6.252599 TGAAGTGATCTATTGCCCATTAGT 57.747 37.500 0.00 0.00 0.00 2.24
2145 2470 6.057533 TGAAGTGATCTATTGCCCATTAGTG 58.942 40.000 0.00 0.00 0.00 2.74
2146 2471 5.636903 AGTGATCTATTGCCCATTAGTGT 57.363 39.130 0.00 0.00 0.00 3.55
2147 2472 5.615289 AGTGATCTATTGCCCATTAGTGTC 58.385 41.667 0.00 0.00 0.00 3.67
2148 2473 5.130975 AGTGATCTATTGCCCATTAGTGTCA 59.869 40.000 0.00 0.00 0.00 3.58
2149 2474 5.237344 GTGATCTATTGCCCATTAGTGTCAC 59.763 44.000 0.00 0.00 32.06 3.67
2150 2475 4.835284 TCTATTGCCCATTAGTGTCACA 57.165 40.909 5.62 0.00 0.00 3.58
2151 2476 5.372343 TCTATTGCCCATTAGTGTCACAT 57.628 39.130 5.62 0.00 0.00 3.21
2152 2477 6.493189 TCTATTGCCCATTAGTGTCACATA 57.507 37.500 5.62 0.00 0.00 2.29
2153 2478 6.894682 TCTATTGCCCATTAGTGTCACATAA 58.105 36.000 5.62 1.99 0.00 1.90
2154 2479 7.517320 TCTATTGCCCATTAGTGTCACATAAT 58.483 34.615 5.62 4.18 0.00 1.28
2155 2480 6.639632 ATTGCCCATTAGTGTCACATAATC 57.360 37.500 5.62 0.00 0.00 1.75
2156 2481 5.372343 TGCCCATTAGTGTCACATAATCT 57.628 39.130 5.62 0.00 0.00 2.40
2157 2482 5.125356 TGCCCATTAGTGTCACATAATCTG 58.875 41.667 5.62 2.34 0.00 2.90
2158 2483 5.126067 GCCCATTAGTGTCACATAATCTGT 58.874 41.667 5.62 0.00 39.20 3.41
2159 2484 6.126911 TGCCCATTAGTGTCACATAATCTGTA 60.127 38.462 5.62 0.00 35.91 2.74
2160 2485 6.936900 GCCCATTAGTGTCACATAATCTGTAT 59.063 38.462 5.62 0.00 35.91 2.29
2161 2486 8.094548 GCCCATTAGTGTCACATAATCTGTATA 58.905 37.037 5.62 0.00 35.91 1.47
2162 2487 9.996554 CCCATTAGTGTCACATAATCTGTATAA 57.003 33.333 5.62 0.00 35.91 0.98
2196 2521 3.552132 AAAACAAAAGAAATGCCGGGT 57.448 38.095 2.18 0.00 0.00 5.28
2197 2522 3.552132 AAACAAAAGAAATGCCGGGTT 57.448 38.095 2.18 0.00 0.00 4.11
2198 2523 2.812358 ACAAAAGAAATGCCGGGTTC 57.188 45.000 2.18 0.00 0.00 3.62
2199 2524 2.035632 ACAAAAGAAATGCCGGGTTCA 58.964 42.857 2.18 0.00 0.00 3.18
2200 2525 2.632512 ACAAAAGAAATGCCGGGTTCAT 59.367 40.909 2.18 0.00 0.00 2.57
2201 2526 3.070878 ACAAAAGAAATGCCGGGTTCATT 59.929 39.130 2.18 1.10 35.83 2.57
2202 2527 4.282195 ACAAAAGAAATGCCGGGTTCATTA 59.718 37.500 2.18 0.00 34.09 1.90
2203 2528 5.046663 ACAAAAGAAATGCCGGGTTCATTAT 60.047 36.000 2.18 0.00 34.09 1.28
2204 2529 4.654091 AAGAAATGCCGGGTTCATTATG 57.346 40.909 2.18 0.00 34.09 1.90
2205 2530 2.362077 AGAAATGCCGGGTTCATTATGC 59.638 45.455 2.18 0.00 34.09 3.14
2206 2531 2.071778 AATGCCGGGTTCATTATGCT 57.928 45.000 2.18 0.00 32.84 3.79
2207 2532 2.071778 ATGCCGGGTTCATTATGCTT 57.928 45.000 2.18 0.00 0.00 3.91
2208 2533 1.846007 TGCCGGGTTCATTATGCTTT 58.154 45.000 2.18 0.00 0.00 3.51
2209 2534 3.006112 TGCCGGGTTCATTATGCTTTA 57.994 42.857 2.18 0.00 0.00 1.85
2210 2535 3.357203 TGCCGGGTTCATTATGCTTTAA 58.643 40.909 2.18 0.00 0.00 1.52
2211 2536 3.957497 TGCCGGGTTCATTATGCTTTAAT 59.043 39.130 2.18 0.00 0.00 1.40
2212 2537 4.202101 TGCCGGGTTCATTATGCTTTAATG 60.202 41.667 2.18 11.52 36.53 1.90
2213 2538 4.037446 GCCGGGTTCATTATGCTTTAATGA 59.963 41.667 2.18 14.72 40.82 2.57
2214 2539 5.278957 GCCGGGTTCATTATGCTTTAATGAT 60.279 40.000 17.65 0.00 41.74 2.45
2215 2540 6.738453 GCCGGGTTCATTATGCTTTAATGATT 60.738 38.462 17.65 0.00 41.74 2.57
2216 2541 7.523052 GCCGGGTTCATTATGCTTTAATGATTA 60.523 37.037 17.65 6.79 41.74 1.75
2217 2542 8.356657 CCGGGTTCATTATGCTTTAATGATTAA 58.643 33.333 17.65 0.00 41.74 1.40
2218 2543 9.743057 CGGGTTCATTATGCTTTAATGATTAAA 57.257 29.630 17.65 9.73 41.74 1.52
2231 2556 7.817418 TTAATGATTAAAGGTAGACCCATGC 57.183 36.000 0.00 0.00 36.42 4.06
2232 2557 4.853468 TGATTAAAGGTAGACCCATGCA 57.147 40.909 0.00 0.00 36.42 3.96
2233 2558 5.186256 TGATTAAAGGTAGACCCATGCAA 57.814 39.130 0.00 0.00 36.42 4.08
2234 2559 5.575157 TGATTAAAGGTAGACCCATGCAAA 58.425 37.500 0.00 0.00 36.42 3.68
2235 2560 5.652014 TGATTAAAGGTAGACCCATGCAAAG 59.348 40.000 0.00 0.00 36.42 2.77
2236 2561 3.806949 AAAGGTAGACCCATGCAAAGA 57.193 42.857 0.00 0.00 36.42 2.52
2237 2562 3.806949 AAGGTAGACCCATGCAAAGAA 57.193 42.857 0.00 0.00 36.42 2.52
2238 2563 3.806949 AGGTAGACCCATGCAAAGAAA 57.193 42.857 0.00 0.00 36.42 2.52
2239 2564 4.112634 AGGTAGACCCATGCAAAGAAAA 57.887 40.909 0.00 0.00 36.42 2.29
2240 2565 4.677182 AGGTAGACCCATGCAAAGAAAAT 58.323 39.130 0.00 0.00 36.42 1.82
2241 2566 5.086621 AGGTAGACCCATGCAAAGAAAATT 58.913 37.500 0.00 0.00 36.42 1.82
2242 2567 6.252995 AGGTAGACCCATGCAAAGAAAATTA 58.747 36.000 0.00 0.00 36.42 1.40
2243 2568 6.723977 AGGTAGACCCATGCAAAGAAAATTAA 59.276 34.615 0.00 0.00 36.42 1.40
2244 2569 7.400052 AGGTAGACCCATGCAAAGAAAATTAAT 59.600 33.333 0.00 0.00 36.42 1.40
2245 2570 7.492344 GGTAGACCCATGCAAAGAAAATTAATG 59.508 37.037 0.00 0.00 0.00 1.90
2246 2571 7.243604 AGACCCATGCAAAGAAAATTAATGA 57.756 32.000 0.00 0.00 0.00 2.57
2247 2572 7.678837 AGACCCATGCAAAGAAAATTAATGAA 58.321 30.769 0.00 0.00 0.00 2.57
2248 2573 8.323567 AGACCCATGCAAAGAAAATTAATGAAT 58.676 29.630 0.00 0.00 0.00 2.57
2249 2574 8.866970 ACCCATGCAAAGAAAATTAATGAATT 57.133 26.923 0.00 0.00 36.82 2.17
2250 2575 9.299465 ACCCATGCAAAGAAAATTAATGAATTT 57.701 25.926 0.00 0.00 45.30 1.82
2251 2576 9.562583 CCCATGCAAAGAAAATTAATGAATTTG 57.437 29.630 1.29 9.58 43.10 2.32
2255 2580 9.334947 TGCAAAGAAAATTAATGAATTTGACCA 57.665 25.926 1.29 6.17 43.10 4.02
2256 2581 9.815936 GCAAAGAAAATTAATGAATTTGACCAG 57.184 29.630 1.29 0.00 43.10 4.00
2263 2588 9.880157 AAATTAATGAATTTGACCAGAATCCTG 57.120 29.630 0.00 0.00 42.46 3.86
2264 2589 8.599624 ATTAATGAATTTGACCAGAATCCTGT 57.400 30.769 0.00 0.00 38.74 4.00
2265 2590 9.699410 ATTAATGAATTTGACCAGAATCCTGTA 57.301 29.630 0.00 0.00 38.74 2.74
2266 2591 9.527157 TTAATGAATTTGACCAGAATCCTGTAA 57.473 29.630 0.00 0.00 38.74 2.41
2267 2592 8.599624 AATGAATTTGACCAGAATCCTGTAAT 57.400 30.769 0.00 0.00 38.74 1.89
2268 2593 7.630242 TGAATTTGACCAGAATCCTGTAATC 57.370 36.000 0.00 0.00 38.74 1.75
2269 2594 7.174413 TGAATTTGACCAGAATCCTGTAATCA 58.826 34.615 0.00 0.00 38.74 2.57
2270 2595 7.337689 TGAATTTGACCAGAATCCTGTAATCAG 59.662 37.037 0.00 0.00 38.74 2.90
2271 2596 5.762179 TTGACCAGAATCCTGTAATCAGT 57.238 39.130 0.00 0.00 39.82 3.41
2272 2597 6.867519 TTGACCAGAATCCTGTAATCAGTA 57.132 37.500 0.00 0.00 39.82 2.74
2273 2598 6.222038 TGACCAGAATCCTGTAATCAGTAC 57.778 41.667 0.00 0.00 39.82 2.73
2274 2599 5.719563 TGACCAGAATCCTGTAATCAGTACA 59.280 40.000 0.00 0.00 40.54 2.90
2275 2600 5.978814 ACCAGAATCCTGTAATCAGTACAC 58.021 41.667 0.00 0.00 37.81 2.90
2276 2601 5.483937 ACCAGAATCCTGTAATCAGTACACA 59.516 40.000 0.00 0.00 37.81 3.72
2277 2602 6.156949 ACCAGAATCCTGTAATCAGTACACAT 59.843 38.462 0.00 0.00 37.81 3.21
2278 2603 7.050377 CCAGAATCCTGTAATCAGTACACATT 58.950 38.462 0.00 0.00 37.81 2.71
2279 2604 8.204160 CCAGAATCCTGTAATCAGTACACATTA 58.796 37.037 0.00 0.00 37.81 1.90
2280 2605 9.599866 CAGAATCCTGTAATCAGTACACATTAA 57.400 33.333 0.00 0.00 37.81 1.40
2281 2606 9.823647 AGAATCCTGTAATCAGTACACATTAAG 57.176 33.333 0.00 0.00 37.81 1.85
2282 2607 8.438676 AATCCTGTAATCAGTACACATTAAGC 57.561 34.615 0.00 0.00 37.81 3.09
2283 2608 6.941857 TCCTGTAATCAGTACACATTAAGCA 58.058 36.000 0.00 0.00 37.81 3.91
2284 2609 7.390823 TCCTGTAATCAGTACACATTAAGCAA 58.609 34.615 0.00 0.00 37.81 3.91
2285 2610 7.333423 TCCTGTAATCAGTACACATTAAGCAAC 59.667 37.037 0.00 0.00 37.81 4.17
2286 2611 7.119116 CCTGTAATCAGTACACATTAAGCAACA 59.881 37.037 0.00 0.00 37.81 3.33
2287 2612 8.384607 TGTAATCAGTACACATTAAGCAACAA 57.615 30.769 0.00 0.00 37.81 2.83
2288 2613 9.008965 TGTAATCAGTACACATTAAGCAACAAT 57.991 29.630 0.00 0.00 37.81 2.71
2289 2614 9.840427 GTAATCAGTACACATTAAGCAACAATT 57.160 29.630 0.00 0.00 32.45 2.32
2320 2645 9.084164 TGTAGTATGTCGAAGAGATTTAAAAGC 57.916 33.333 0.00 0.00 37.12 3.51
2321 2646 9.303537 GTAGTATGTCGAAGAGATTTAAAAGCT 57.696 33.333 0.00 0.00 37.12 3.74
2322 2647 8.413899 AGTATGTCGAAGAGATTTAAAAGCTC 57.586 34.615 11.48 11.48 37.12 4.09
2339 2664 9.561069 TTAAAAGCTCTACAGAGAAATTGAAGT 57.439 29.630 10.46 0.00 44.74 3.01
2340 2665 7.432350 AAAGCTCTACAGAGAAATTGAAGTG 57.568 36.000 10.46 0.00 44.74 3.16
2341 2666 6.352016 AGCTCTACAGAGAAATTGAAGTGA 57.648 37.500 10.46 0.00 44.74 3.41
2342 2667 6.945218 AGCTCTACAGAGAAATTGAAGTGAT 58.055 36.000 10.46 0.00 44.74 3.06
2343 2668 6.817641 AGCTCTACAGAGAAATTGAAGTGATG 59.182 38.462 10.46 0.00 44.74 3.07
2344 2669 6.593382 GCTCTACAGAGAAATTGAAGTGATGT 59.407 38.462 10.46 0.00 44.74 3.06
2345 2670 7.761704 GCTCTACAGAGAAATTGAAGTGATGTA 59.238 37.037 10.46 0.00 44.74 2.29
2346 2671 9.814899 CTCTACAGAGAAATTGAAGTGATGTAT 57.185 33.333 0.00 0.00 44.74 2.29
2349 2674 7.533426 ACAGAGAAATTGAAGTGATGTATTGC 58.467 34.615 0.00 0.00 0.00 3.56
2350 2675 6.971184 CAGAGAAATTGAAGTGATGTATTGCC 59.029 38.462 0.00 0.00 0.00 4.52
2351 2676 6.096001 AGAGAAATTGAAGTGATGTATTGCCC 59.904 38.462 0.00 0.00 0.00 5.36
2352 2677 5.716228 AGAAATTGAAGTGATGTATTGCCCA 59.284 36.000 0.00 0.00 0.00 5.36
2353 2678 6.381994 AGAAATTGAAGTGATGTATTGCCCAT 59.618 34.615 0.00 0.00 0.00 4.00
2354 2679 6.549433 AATTGAAGTGATGTATTGCCCATT 57.451 33.333 0.00 0.00 0.00 3.16
2355 2680 7.658525 AATTGAAGTGATGTATTGCCCATTA 57.341 32.000 0.00 0.00 0.00 1.90
2356 2681 6.698008 TTGAAGTGATGTATTGCCCATTAG 57.302 37.500 0.00 0.00 0.00 1.73
2357 2682 5.754782 TGAAGTGATGTATTGCCCATTAGT 58.245 37.500 0.00 0.00 0.00 2.24
2358 2683 5.589855 TGAAGTGATGTATTGCCCATTAGTG 59.410 40.000 0.00 0.00 0.00 2.74
2359 2684 5.116084 AGTGATGTATTGCCCATTAGTGT 57.884 39.130 0.00 0.00 0.00 3.55
2360 2685 5.126067 AGTGATGTATTGCCCATTAGTGTC 58.874 41.667 0.00 0.00 0.00 3.67
2361 2686 4.881273 GTGATGTATTGCCCATTAGTGTCA 59.119 41.667 0.00 0.00 0.00 3.58
2362 2687 4.881273 TGATGTATTGCCCATTAGTGTCAC 59.119 41.667 0.00 0.00 0.00 3.67
2363 2688 4.293662 TGTATTGCCCATTAGTGTCACA 57.706 40.909 5.62 0.00 0.00 3.58
2364 2689 4.854173 TGTATTGCCCATTAGTGTCACAT 58.146 39.130 5.62 0.00 0.00 3.21
2365 2690 5.995446 TGTATTGCCCATTAGTGTCACATA 58.005 37.500 5.62 0.00 0.00 2.29
2366 2691 6.418946 TGTATTGCCCATTAGTGTCACATAA 58.581 36.000 5.62 1.99 0.00 1.90
2367 2692 7.059788 TGTATTGCCCATTAGTGTCACATAAT 58.940 34.615 5.62 4.18 0.00 1.28
2368 2693 6.639632 ATTGCCCATTAGTGTCACATAATC 57.360 37.500 5.62 0.00 0.00 1.75
2369 2694 5.372343 TGCCCATTAGTGTCACATAATCT 57.628 39.130 5.62 0.00 0.00 2.40
2370 2695 5.125356 TGCCCATTAGTGTCACATAATCTG 58.875 41.667 5.62 2.34 0.00 2.90
2371 2696 5.126067 GCCCATTAGTGTCACATAATCTGT 58.874 41.667 5.62 0.00 39.20 3.41
2372 2697 6.126911 TGCCCATTAGTGTCACATAATCTGTA 60.127 38.462 5.62 0.00 35.91 2.74
2373 2698 6.936900 GCCCATTAGTGTCACATAATCTGTAT 59.063 38.462 5.62 0.00 35.91 2.29
2374 2699 8.094548 GCCCATTAGTGTCACATAATCTGTATA 58.905 37.037 5.62 0.00 35.91 1.47
2375 2700 9.996554 CCCATTAGTGTCACATAATCTGTATAA 57.003 33.333 5.62 0.00 35.91 0.98
2479 2804 8.599624 ATGAATTTGACCAGAATCCTGTAATT 57.400 30.769 0.00 0.00 38.74 1.40
2524 2849 8.995027 TTTTATTGTATAGTACTCCCTCCGTA 57.005 34.615 0.00 0.00 0.00 4.02
2546 2871 2.416547 CGGAATCAGTTGACGCTCAAAT 59.583 45.455 2.65 0.00 38.22 2.32
2555 2880 0.239347 GACGCTCAAATGCAGTGCTT 59.761 50.000 17.60 7.26 0.00 3.91
2589 2914 4.471904 TGAGCGACAACTAATTCCAGAT 57.528 40.909 0.00 0.00 0.00 2.90
2714 3076 0.970427 GGGACAACGGGCCAATGAAT 60.970 55.000 4.39 0.00 0.00 2.57
2740 3102 6.780706 TTTGAGGTTCGTAGATTTTGAGTC 57.219 37.500 0.00 0.00 35.04 3.36
2760 3122 7.901029 TGAGTCAAAATCAGAGTAGTTGATCT 58.099 34.615 0.00 0.00 34.30 2.75
2802 3182 4.330056 TGGAAGGTCCAGCTTGGA 57.670 55.556 0.00 1.25 42.67 3.53
2862 3242 6.484643 TGCTTTCTTATTATCATGCCTCAGAC 59.515 38.462 0.00 0.00 0.00 3.51
2912 3390 9.905713 AAATCAACCACATACACTCATAGTAAT 57.094 29.630 0.00 0.00 0.00 1.89
2948 3426 6.283544 TGATGCAAACCATAATCAACATGT 57.716 33.333 0.00 0.00 33.29 3.21
2958 3436 9.691362 AACCATAATCAACATGTAAAACAGTTC 57.309 29.630 0.00 0.00 0.00 3.01
3011 3712 3.815856 TTGGCATGACTGAAAAGCAAA 57.184 38.095 0.00 0.00 0.00 3.68
3015 3716 3.061322 GCATGACTGAAAAGCAAATGCA 58.939 40.909 8.28 0.00 45.16 3.96
3413 5652 5.257577 ACCCTGAGCCTTCTCTATCCTATAT 59.742 44.000 0.00 0.00 40.03 0.86
3707 5956 8.970859 AGGACAGATTCTTGAAATGGTAATAG 57.029 34.615 0.00 0.00 0.00 1.73
3797 6137 1.000274 GCTTTCCAACCGCAGATGTTT 60.000 47.619 0.00 0.00 0.00 2.83
3799 6139 3.308530 CTTTCCAACCGCAGATGTTTTC 58.691 45.455 0.00 0.00 0.00 2.29
3800 6140 2.270352 TCCAACCGCAGATGTTTTCT 57.730 45.000 0.00 0.00 33.90 2.52
3960 6315 1.870402 CAACATGTCTGTACCAACGCA 59.130 47.619 0.00 0.00 33.36 5.24
4021 6376 1.661112 GACAAGCAGGTGAAGTATCGC 59.339 52.381 0.00 0.00 35.26 4.58
4066 6421 6.485648 AGTGCTTCCGTACTTAAACAGAAAAT 59.514 34.615 0.00 0.00 31.65 1.82
4120 6475 2.159393 ACACAACGCCATATGCATGTTC 60.159 45.455 10.16 0.00 41.33 3.18
4283 6638 2.408050 ACAAAGATCTGCGAGACACAC 58.592 47.619 0.00 0.00 0.00 3.82
4686 7041 0.961019 AACATGCTTGTGGCGATGTT 59.039 45.000 5.94 0.00 45.43 2.71
4864 7219 2.143122 TCTGTCGATGTTTCAGTTGCC 58.857 47.619 0.00 0.00 0.00 4.52
4918 7273 4.559643 GGTTTCGTTCACAATTTGTCGTTT 59.440 37.500 0.00 0.00 0.00 3.60
4990 7346 9.881773 ATGGTGTTTTCATCCCAAATATATACT 57.118 29.630 0.00 0.00 31.30 2.12
4991 7347 9.349713 TGGTGTTTTCATCCCAAATATATACTC 57.650 33.333 0.00 0.00 0.00 2.59
4992 7348 8.793592 GGTGTTTTCATCCCAAATATATACTCC 58.206 37.037 0.00 0.00 0.00 3.85
4993 7349 8.793592 GTGTTTTCATCCCAAATATATACTCCC 58.206 37.037 0.00 0.00 0.00 4.30
4995 7351 9.232473 GTTTTCATCCCAAATATATACTCCCTC 57.768 37.037 0.00 0.00 0.00 4.30
4996 7352 7.510675 TTCATCCCAAATATATACTCCCTCC 57.489 40.000 0.00 0.00 0.00 4.30
4997 7353 5.661312 TCATCCCAAATATATACTCCCTCCG 59.339 44.000 0.00 0.00 0.00 4.63
5001 7357 7.018150 TCCCAAATATATACTCCCTCCGTAAA 58.982 38.462 0.00 0.00 0.00 2.01
5013 7369 8.773033 ACTCCCTCCGTAAACTAAATATAAGA 57.227 34.615 0.00 0.00 0.00 2.10
5014 7370 8.858094 ACTCCCTCCGTAAACTAAATATAAGAG 58.142 37.037 0.00 0.00 0.00 2.85
5015 7371 8.773033 TCCCTCCGTAAACTAAATATAAGAGT 57.227 34.615 0.00 0.00 0.00 3.24
5016 7372 8.636213 TCCCTCCGTAAACTAAATATAAGAGTG 58.364 37.037 0.00 0.00 0.00 3.51
5017 7373 8.636213 CCCTCCGTAAACTAAATATAAGAGTGA 58.364 37.037 0.00 0.00 0.00 3.41
5018 7374 9.680315 CCTCCGTAAACTAAATATAAGAGTGAG 57.320 37.037 0.00 0.00 0.00 3.51
5087 7443 9.744468 AAAACTAAGGTTTGTGACATTATGTTC 57.256 29.630 0.00 0.00 43.90 3.18
5090 7446 8.567948 ACTAAGGTTTGTGACATTATGTTCAAG 58.432 33.333 0.00 0.00 34.37 3.02
5091 7447 6.959639 AGGTTTGTGACATTATGTTCAAGT 57.040 33.333 0.00 0.00 30.83 3.16
5092 7448 7.346751 AGGTTTGTGACATTATGTTCAAGTT 57.653 32.000 0.00 0.00 30.83 2.66
5093 7449 7.202526 AGGTTTGTGACATTATGTTCAAGTTG 58.797 34.615 0.00 0.00 30.83 3.16
5150 7506 1.214923 ACTTGGTGGGACGGGTTAAAA 59.785 47.619 0.00 0.00 0.00 1.52
5168 7524 9.301153 GGGTTAAAATCATGACATTATGTTCAC 57.699 33.333 0.00 0.00 0.00 3.18
5222 7580 9.950680 TTCTAGTCATTGATTTTCAAAACTCAC 57.049 29.630 10.22 0.00 40.12 3.51
5227 7585 4.203950 TGATTTTCAAAACTCACGTCCG 57.796 40.909 0.00 0.00 0.00 4.79
5230 7588 3.936902 TTTCAAAACTCACGTCCGAAG 57.063 42.857 0.00 0.00 0.00 3.79
5297 7655 8.795842 TTTCATAATACCACGTATGAAACCTT 57.204 30.769 14.76 0.00 45.26 3.50
5341 7699 7.633193 TCCAAAACTAGTGCAAGAAGTTTTA 57.367 32.000 23.69 13.60 46.39 1.52
5430 7789 7.713750 TCCAAGATATTACAGGTTTAGTCTCG 58.286 38.462 0.00 0.00 0.00 4.04
5443 7802 6.152323 AGGTTTAGTCTCGTATTGCTCAAGTA 59.848 38.462 0.00 0.00 0.00 2.24
5460 7819 4.163458 TCAAGTAACGGGCTGGAGATTAAT 59.837 41.667 0.00 0.00 0.00 1.40
5506 7868 1.073284 TCAATATTAGAAGCGGGGCCC 59.927 52.381 15.76 15.76 0.00 5.80
5507 7869 0.404426 AATATTAGAAGCGGGGCCCC 59.596 55.000 33.22 33.22 0.00 5.80
5540 7902 2.503765 TGGGTAGCGGAATCTTGATCAA 59.496 45.455 8.12 8.12 0.00 2.57
5553 7915 4.894784 TCTTGATCAAACACACCTCTACC 58.105 43.478 9.88 0.00 0.00 3.18
5560 7922 8.768397 TGATCAAACACACCTCTACCTAATTAT 58.232 33.333 0.00 0.00 0.00 1.28
5594 7956 5.484644 TGATCAAACAAATGGATTGATGGGT 59.515 36.000 16.44 0.48 42.26 4.51
5595 7957 6.666980 TGATCAAACAAATGGATTGATGGGTA 59.333 34.615 16.44 3.86 42.26 3.69
5598 7960 7.915930 TCAAACAAATGGATTGATGGGTATTT 58.084 30.769 0.00 0.00 41.85 1.40
5599 7961 8.381636 TCAAACAAATGGATTGATGGGTATTTT 58.618 29.630 0.00 0.00 41.85 1.82
5601 7963 6.652053 ACAAATGGATTGATGGGTATTTTGG 58.348 36.000 0.00 0.00 41.85 3.28
5602 7964 6.215227 ACAAATGGATTGATGGGTATTTTGGT 59.785 34.615 0.00 0.00 41.85 3.67
5604 7966 4.940483 TGGATTGATGGGTATTTTGGTGA 58.060 39.130 0.00 0.00 0.00 4.02
5627 7989 9.383519 GTGATTAAATCCATCAGTTACTTGAGA 57.616 33.333 0.00 0.00 31.11 3.27
5736 8112 8.180267 CCTTCAACTAATTTATGCTCTCACTTG 58.820 37.037 0.00 0.00 0.00 3.16
5756 8132 1.266175 GGTCGACTCTCGTTCAACAGA 59.734 52.381 16.46 0.00 41.35 3.41
5757 8133 2.576406 GTCGACTCTCGTTCAACAGAG 58.424 52.381 8.70 12.74 41.35 3.35
5758 8134 1.535896 TCGACTCTCGTTCAACAGAGG 59.464 52.381 16.58 8.23 40.57 3.69
5759 8135 1.704070 GACTCTCGTTCAACAGAGGC 58.296 55.000 16.58 12.21 40.57 4.70
5760 8136 1.271102 GACTCTCGTTCAACAGAGGCT 59.729 52.381 16.58 0.00 41.12 4.58
5761 8137 2.488545 GACTCTCGTTCAACAGAGGCTA 59.511 50.000 16.58 0.00 41.12 3.93
5762 8138 2.891580 ACTCTCGTTCAACAGAGGCTAA 59.108 45.455 16.58 0.00 40.57 3.09
5763 8139 3.057174 ACTCTCGTTCAACAGAGGCTAAG 60.057 47.826 16.58 7.59 40.57 2.18
5764 8140 2.231478 TCTCGTTCAACAGAGGCTAAGG 59.769 50.000 8.80 0.00 35.34 2.69
5765 8141 2.231478 CTCGTTCAACAGAGGCTAAGGA 59.769 50.000 0.00 0.00 0.00 3.36
5766 8142 2.631062 TCGTTCAACAGAGGCTAAGGAA 59.369 45.455 0.00 0.00 0.00 3.36
5767 8143 3.070446 TCGTTCAACAGAGGCTAAGGAAA 59.930 43.478 0.00 0.00 0.00 3.13
5768 8144 3.186613 CGTTCAACAGAGGCTAAGGAAAC 59.813 47.826 0.00 0.00 0.00 2.78
5770 8146 4.008074 TCAACAGAGGCTAAGGAAACTG 57.992 45.455 0.00 0.00 42.68 3.16
5771 8147 3.391296 TCAACAGAGGCTAAGGAAACTGT 59.609 43.478 0.00 0.00 42.68 3.55
5772 8148 3.686916 ACAGAGGCTAAGGAAACTGTC 57.313 47.619 0.00 0.00 42.68 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.234615 TACTCCCTTGCTTTGTGCGC 61.235 55.000 0.00 0.00 46.63 6.09
1 2 1.453155 ATACTCCCTTGCTTTGTGCG 58.547 50.000 0.00 0.00 46.63 5.34
2 3 3.084786 AGAATACTCCCTTGCTTTGTGC 58.915 45.455 0.00 0.00 43.25 4.57
4 5 3.084786 GCAGAATACTCCCTTGCTTTGT 58.915 45.455 0.00 0.00 0.00 2.83
5 6 3.084039 TGCAGAATACTCCCTTGCTTTG 58.916 45.455 0.00 0.00 0.00 2.77
6 7 3.439857 TGCAGAATACTCCCTTGCTTT 57.560 42.857 0.00 0.00 0.00 3.51
7 8 3.439857 TTGCAGAATACTCCCTTGCTT 57.560 42.857 0.00 0.00 0.00 3.91
9 10 4.519540 TTTTTGCAGAATACTCCCTTGC 57.480 40.909 0.00 0.00 0.00 4.01
27 28 2.418609 GGTGCTGAAGTGGCAAGTTTTT 60.419 45.455 0.00 0.00 41.54 1.94
28 29 1.136891 GGTGCTGAAGTGGCAAGTTTT 59.863 47.619 0.00 0.00 41.54 2.43
29 30 0.746659 GGTGCTGAAGTGGCAAGTTT 59.253 50.000 0.00 0.00 41.54 2.66
30 31 1.109323 GGGTGCTGAAGTGGCAAGTT 61.109 55.000 0.00 0.00 41.54 2.66
31 32 1.529244 GGGTGCTGAAGTGGCAAGT 60.529 57.895 0.00 0.00 41.54 3.16
32 33 2.620112 CGGGTGCTGAAGTGGCAAG 61.620 63.158 0.00 0.00 41.54 4.01
33 34 2.594303 CGGGTGCTGAAGTGGCAA 60.594 61.111 0.00 0.00 41.54 4.52
34 35 3.555324 TCGGGTGCTGAAGTGGCA 61.555 61.111 0.00 0.00 37.36 4.92
35 36 3.050275 GTCGGGTGCTGAAGTGGC 61.050 66.667 0.00 0.00 0.00 5.01
36 37 1.669115 CTGTCGGGTGCTGAAGTGG 60.669 63.158 0.00 0.00 0.00 4.00
37 38 1.669115 CCTGTCGGGTGCTGAAGTG 60.669 63.158 0.00 0.00 0.00 3.16
38 39 2.743718 CCTGTCGGGTGCTGAAGT 59.256 61.111 0.00 0.00 0.00 3.01
39 40 2.743928 GCCTGTCGGGTGCTGAAG 60.744 66.667 0.00 0.00 37.43 3.02
40 41 4.680237 CGCCTGTCGGGTGCTGAA 62.680 66.667 0.00 0.00 38.88 3.02
56 57 2.484287 AATCTGACTGGTTGGGCCCG 62.484 60.000 19.37 4.36 36.04 6.13
57 58 0.681243 GAATCTGACTGGTTGGGCCC 60.681 60.000 17.59 17.59 36.04 5.80
58 59 0.681243 GGAATCTGACTGGTTGGGCC 60.681 60.000 0.00 0.00 37.90 5.80
59 60 0.681243 GGGAATCTGACTGGTTGGGC 60.681 60.000 0.00 0.00 0.00 5.36
60 61 0.995024 AGGGAATCTGACTGGTTGGG 59.005 55.000 0.00 0.00 0.00 4.12
61 62 1.352352 ACAGGGAATCTGACTGGTTGG 59.648 52.381 0.00 0.00 46.18 3.77
62 63 2.038952 TGACAGGGAATCTGACTGGTTG 59.961 50.000 0.00 0.00 46.18 3.77
63 64 2.338809 TGACAGGGAATCTGACTGGTT 58.661 47.619 0.00 0.00 46.18 3.67
64 65 2.030027 TGACAGGGAATCTGACTGGT 57.970 50.000 0.00 0.00 46.18 4.00
65 66 3.641434 ATTGACAGGGAATCTGACTGG 57.359 47.619 0.00 0.00 46.18 4.00
66 67 5.089970 TGTATTGACAGGGAATCTGACTG 57.910 43.478 0.00 0.00 46.18 3.51
67 68 5.965033 ATGTATTGACAGGGAATCTGACT 57.035 39.130 0.00 0.00 46.18 3.41
68 69 9.778741 TTTATATGTATTGACAGGGAATCTGAC 57.221 33.333 0.00 0.00 46.18 3.51
69 70 9.778741 GTTTATATGTATTGACAGGGAATCTGA 57.221 33.333 0.00 0.00 46.18 3.27
71 72 9.784531 CAGTTTATATGTATTGACAGGGAATCT 57.215 33.333 0.00 0.00 39.50 2.40
72 73 8.507249 GCAGTTTATATGTATTGACAGGGAATC 58.493 37.037 0.00 0.00 39.50 2.52
73 74 7.998383 TGCAGTTTATATGTATTGACAGGGAAT 59.002 33.333 0.00 0.00 39.50 3.01
74 75 7.342581 TGCAGTTTATATGTATTGACAGGGAA 58.657 34.615 0.00 0.00 39.50 3.97
75 76 6.894682 TGCAGTTTATATGTATTGACAGGGA 58.105 36.000 0.00 0.00 39.50 4.20
76 77 6.767902 ACTGCAGTTTATATGTATTGACAGGG 59.232 38.462 15.25 0.00 39.50 4.45
77 78 7.792374 ACTGCAGTTTATATGTATTGACAGG 57.208 36.000 15.25 0.00 39.50 4.00
110 111 1.587613 GTGCGAGGCGTTGCAAAAA 60.588 52.632 22.30 0.00 45.13 1.94
111 112 2.025441 GTGCGAGGCGTTGCAAAA 59.975 55.556 22.30 0.00 45.13 2.44
112 113 3.959975 GGTGCGAGGCGTTGCAAA 61.960 61.111 22.30 0.00 45.13 3.68
115 116 3.879351 CTTTGGTGCGAGGCGTTGC 62.879 63.158 11.80 11.80 0.00 4.17
116 117 2.058829 AACTTTGGTGCGAGGCGTTG 62.059 55.000 0.00 0.00 0.00 4.10
117 118 1.822186 AACTTTGGTGCGAGGCGTT 60.822 52.632 0.00 0.00 0.00 4.84
118 119 2.203153 AACTTTGGTGCGAGGCGT 60.203 55.556 0.00 0.00 0.00 5.68
119 120 2.252260 CAACTTTGGTGCGAGGCG 59.748 61.111 0.00 0.00 0.00 5.52
120 121 2.644992 CCAACTTTGGTGCGAGGC 59.355 61.111 0.00 0.00 43.43 4.70
129 130 5.721876 TTTACGTGTCAGTACCAACTTTG 57.278 39.130 0.00 0.00 31.97 2.77
130 131 6.740411 TTTTTACGTGTCAGTACCAACTTT 57.260 33.333 0.00 0.00 31.97 2.66
131 132 6.930667 ATTTTTACGTGTCAGTACCAACTT 57.069 33.333 0.00 0.00 31.97 2.66
132 133 6.930667 AATTTTTACGTGTCAGTACCAACT 57.069 33.333 0.00 0.00 35.91 3.16
133 134 7.071414 GGTAATTTTTACGTGTCAGTACCAAC 58.929 38.462 0.00 0.00 0.00 3.77
134 135 6.765036 TGGTAATTTTTACGTGTCAGTACCAA 59.235 34.615 12.78 2.05 36.44 3.67
135 136 6.286758 TGGTAATTTTTACGTGTCAGTACCA 58.713 36.000 11.71 11.71 36.89 3.25
136 137 6.783892 TGGTAATTTTTACGTGTCAGTACC 57.216 37.500 0.00 3.56 0.00 3.34
137 138 8.715088 AGATTGGTAATTTTTACGTGTCAGTAC 58.285 33.333 0.00 0.00 0.00 2.73
138 139 8.836268 AGATTGGTAATTTTTACGTGTCAGTA 57.164 30.769 0.00 0.00 0.00 2.74
139 140 7.739498 AGATTGGTAATTTTTACGTGTCAGT 57.261 32.000 0.00 0.00 0.00 3.41
140 141 8.286800 TCAAGATTGGTAATTTTTACGTGTCAG 58.713 33.333 0.00 0.00 0.00 3.51
141 142 8.155821 TCAAGATTGGTAATTTTTACGTGTCA 57.844 30.769 0.00 0.00 0.00 3.58
152 153 9.584008 AGCAGATTGATATCAAGATTGGTAATT 57.416 29.630 21.97 2.72 39.47 1.40
153 154 9.584008 AAGCAGATTGATATCAAGATTGGTAAT 57.416 29.630 21.97 9.61 39.47 1.89
154 155 8.985315 AAGCAGATTGATATCAAGATTGGTAA 57.015 30.769 21.97 0.00 39.47 2.85
155 156 8.985315 AAAGCAGATTGATATCAAGATTGGTA 57.015 30.769 21.97 0.00 39.47 3.25
156 157 7.558807 TGAAAGCAGATTGATATCAAGATTGGT 59.441 33.333 21.97 19.71 39.47 3.67
157 158 7.937649 TGAAAGCAGATTGATATCAAGATTGG 58.062 34.615 21.97 11.28 39.47 3.16
158 159 9.967346 ATTGAAAGCAGATTGATATCAAGATTG 57.033 29.630 21.97 18.74 39.47 2.67
159 160 9.967346 CATTGAAAGCAGATTGATATCAAGATT 57.033 29.630 21.97 11.61 39.47 2.40
160 161 8.082852 GCATTGAAAGCAGATTGATATCAAGAT 58.917 33.333 21.97 11.09 39.47 2.40
161 162 7.423199 GCATTGAAAGCAGATTGATATCAAGA 58.577 34.615 21.97 1.85 39.47 3.02
162 163 6.641314 GGCATTGAAAGCAGATTGATATCAAG 59.359 38.462 21.97 10.85 39.47 3.02
163 164 6.461927 GGGCATTGAAAGCAGATTGATATCAA 60.462 38.462 20.07 20.07 40.51 2.57
164 165 5.010314 GGGCATTGAAAGCAGATTGATATCA 59.990 40.000 0.00 0.00 32.95 2.15
165 166 5.467705 GGGCATTGAAAGCAGATTGATATC 58.532 41.667 0.00 0.00 0.00 1.63
166 167 4.282703 GGGGCATTGAAAGCAGATTGATAT 59.717 41.667 0.00 0.00 0.00 1.63
167 168 3.638160 GGGGCATTGAAAGCAGATTGATA 59.362 43.478 0.00 0.00 0.00 2.15
168 169 2.433239 GGGGCATTGAAAGCAGATTGAT 59.567 45.455 0.00 0.00 0.00 2.57
169 170 1.826720 GGGGCATTGAAAGCAGATTGA 59.173 47.619 0.00 0.00 0.00 2.57
170 171 1.551430 TGGGGCATTGAAAGCAGATTG 59.449 47.619 0.00 0.00 0.00 2.67
171 172 1.941377 TGGGGCATTGAAAGCAGATT 58.059 45.000 0.00 0.00 0.00 2.40
172 173 1.941377 TTGGGGCATTGAAAGCAGAT 58.059 45.000 0.00 0.00 0.00 2.90
173 174 1.941377 ATTGGGGCATTGAAAGCAGA 58.059 45.000 0.00 0.00 0.00 4.26
174 175 2.289819 ACAATTGGGGCATTGAAAGCAG 60.290 45.455 10.83 0.00 0.00 4.24
175 176 1.698532 ACAATTGGGGCATTGAAAGCA 59.301 42.857 10.83 0.00 0.00 3.91
176 177 2.078392 CACAATTGGGGCATTGAAAGC 58.922 47.619 10.83 0.00 0.00 3.51
177 178 2.702261 CCACAATTGGGGCATTGAAAG 58.298 47.619 15.25 0.00 39.57 2.62
178 179 2.855209 CCACAATTGGGGCATTGAAA 57.145 45.000 15.25 0.00 39.57 2.69
189 190 2.503331 TGCACAGGAGTACCACAATTG 58.497 47.619 3.24 3.24 38.94 2.32
190 191 2.949177 TGCACAGGAGTACCACAATT 57.051 45.000 0.00 0.00 38.94 2.32
191 192 2.949177 TTGCACAGGAGTACCACAAT 57.051 45.000 0.00 0.00 38.94 2.71
192 193 2.949177 ATTGCACAGGAGTACCACAA 57.051 45.000 0.00 0.00 38.94 3.33
193 194 2.949177 AATTGCACAGGAGTACCACA 57.051 45.000 0.00 0.00 38.94 4.17
194 195 4.324267 AGTAAATTGCACAGGAGTACCAC 58.676 43.478 0.00 0.00 38.94 4.16
195 196 4.564821 GGAGTAAATTGCACAGGAGTACCA 60.565 45.833 0.00 0.00 38.94 3.25
196 197 3.939592 GGAGTAAATTGCACAGGAGTACC 59.060 47.826 0.00 0.00 0.00 3.34
197 198 4.392138 GTGGAGTAAATTGCACAGGAGTAC 59.608 45.833 0.00 0.00 39.01 2.73
198 199 4.041075 TGTGGAGTAAATTGCACAGGAGTA 59.959 41.667 0.00 0.00 43.23 2.59
199 200 3.181445 TGTGGAGTAAATTGCACAGGAGT 60.181 43.478 0.00 0.00 43.23 3.85
200 201 3.411446 TGTGGAGTAAATTGCACAGGAG 58.589 45.455 0.00 0.00 43.23 3.69
201 202 3.500448 TGTGGAGTAAATTGCACAGGA 57.500 42.857 0.00 0.00 43.23 3.86
204 205 3.411446 CTCCTGTGGAGTAAATTGCACA 58.589 45.455 5.50 0.29 45.40 4.57
216 217 1.679305 GAGTCCGCTCTCCTGTGGA 60.679 63.158 0.00 0.00 43.50 4.02
217 218 2.888863 GAGTCCGCTCTCCTGTGG 59.111 66.667 0.00 0.00 38.66 4.17
218 219 1.380403 ATCGAGTCCGCTCTCCTGTG 61.380 60.000 0.00 0.00 39.53 3.66
219 220 0.681564 AATCGAGTCCGCTCTCCTGT 60.682 55.000 0.00 0.00 39.53 4.00
220 221 0.030101 GAATCGAGTCCGCTCTCCTG 59.970 60.000 0.28 0.00 39.53 3.86
221 222 0.106918 AGAATCGAGTCCGCTCTCCT 60.107 55.000 9.63 0.00 39.53 3.69
259 260 2.433664 GCGTCGGTCGGGACAAAT 60.434 61.111 0.75 0.00 40.26 2.32
664 693 4.142160 CGGGAAGGAAAGATTTGGGATTTC 60.142 45.833 0.00 0.00 33.20 2.17
769 1045 2.432628 CAACGTCCGTCTGCCCTC 60.433 66.667 0.00 0.00 0.00 4.30
770 1046 4.681978 GCAACGTCCGTCTGCCCT 62.682 66.667 12.67 0.00 0.00 5.19
774 1050 1.227999 ACAATGGCAACGTCCGTCTG 61.228 55.000 0.00 0.00 42.51 3.51
865 1165 1.520342 GGCTAGGAACTCAGCAGCG 60.520 63.158 0.00 0.00 41.75 5.18
873 1173 1.307084 GAGGGGTGGGCTAGGAACT 60.307 63.158 0.00 0.00 46.37 3.01
874 1174 2.732619 CGAGGGGTGGGCTAGGAAC 61.733 68.421 0.00 0.00 0.00 3.62
1170 1476 5.050499 CGATCAAGGGAAAATCAAGAGATCG 60.050 44.000 0.00 0.00 43.81 3.69
1182 1488 0.690192 TCTGCACCGATCAAGGGAAA 59.310 50.000 0.00 0.00 35.02 3.13
1184 1490 0.614697 TCTCTGCACCGATCAAGGGA 60.615 55.000 0.00 0.00 35.02 4.20
1185 1491 0.467384 ATCTCTGCACCGATCAAGGG 59.533 55.000 0.00 0.00 35.02 3.95
1459 1772 1.294659 GCACAAGAAGAGGGAGCGTG 61.295 60.000 0.00 0.00 0.00 5.34
1494 1807 2.103373 GAGTGGTATCAGACAGAGGCA 58.897 52.381 0.00 0.00 0.00 4.75
1499 1812 7.323420 TGAATTAACAGAGTGGTATCAGACAG 58.677 38.462 0.00 0.00 0.00 3.51
1500 1813 7.239763 TGAATTAACAGAGTGGTATCAGACA 57.760 36.000 0.00 0.00 0.00 3.41
1627 1940 2.046988 CAGCAGCGGTGTCATCCA 60.047 61.111 17.07 0.00 0.00 3.41
1628 1941 2.103042 GTCAGCAGCGGTGTCATCC 61.103 63.158 17.07 0.00 32.43 3.51
1631 1944 2.280119 GTGTCAGCAGCGGTGTCA 60.280 61.111 17.07 7.98 32.43 3.58
1638 1951 0.248565 TCCTCATCAGTGTCAGCAGC 59.751 55.000 0.00 0.00 0.00 5.25
1639 1952 1.823610 TCTCCTCATCAGTGTCAGCAG 59.176 52.381 0.00 0.00 0.00 4.24
1640 1953 1.928868 TCTCCTCATCAGTGTCAGCA 58.071 50.000 0.00 0.00 0.00 4.41
1655 1968 4.121691 TCGACCGACTCGATCTCC 57.878 61.111 0.00 0.00 46.75 3.71
1694 2007 9.301897 ACAGTACTAATCATCACAGAGCATATA 57.698 33.333 0.00 0.00 0.00 0.86
1715 2028 6.961721 ACCCCCTACTGATAAACTAAACAGTA 59.038 38.462 0.00 0.00 42.39 2.74
1832 2145 2.586357 GCGGATTCCCAGAGTCGC 60.586 66.667 0.00 0.00 0.00 5.19
1989 2312 5.302823 GGCCTACCTTAATTCATTCAAGCAT 59.697 40.000 0.00 0.00 0.00 3.79
1996 2319 3.897505 GCATGGGCCTACCTTAATTCATT 59.102 43.478 4.53 0.00 41.11 2.57
1997 2320 3.117169 TGCATGGGCCTACCTTAATTCAT 60.117 43.478 4.53 0.00 41.11 2.57
1998 2321 2.243478 TGCATGGGCCTACCTTAATTCA 59.757 45.455 4.53 0.00 41.11 2.57
1999 2322 2.944129 TGCATGGGCCTACCTTAATTC 58.056 47.619 4.53 0.00 41.11 2.17
2000 2323 3.396685 TTGCATGGGCCTACCTTAATT 57.603 42.857 4.53 0.00 41.11 1.40
2001 2324 3.031013 GTTTGCATGGGCCTACCTTAAT 58.969 45.455 4.53 0.00 41.11 1.40
2002 2325 2.225142 TGTTTGCATGGGCCTACCTTAA 60.225 45.455 4.53 0.00 41.11 1.85
2003 2326 1.356059 TGTTTGCATGGGCCTACCTTA 59.644 47.619 4.53 0.00 41.11 2.69
2004 2327 0.114168 TGTTTGCATGGGCCTACCTT 59.886 50.000 4.53 0.00 41.11 3.50
2006 2329 0.972883 TTTGTTTGCATGGGCCTACC 59.027 50.000 4.53 0.00 40.13 3.18
2007 2330 2.829741 TTTTGTTTGCATGGGCCTAC 57.170 45.000 4.53 0.00 40.13 3.18
2008 2331 5.489792 TTTATTTTGTTTGCATGGGCCTA 57.510 34.783 4.53 0.00 40.13 3.93
2009 2332 4.363991 TTTATTTTGTTTGCATGGGCCT 57.636 36.364 4.53 0.00 40.13 5.19
2010 2333 4.699257 TCATTTATTTTGTTTGCATGGGCC 59.301 37.500 0.00 0.00 40.13 5.80
2011 2334 5.876612 TCATTTATTTTGTTTGCATGGGC 57.123 34.783 0.00 0.00 41.68 5.36
2012 2335 9.130312 CAAATTCATTTATTTTGTTTGCATGGG 57.870 29.630 0.00 0.00 0.00 4.00
2013 2336 9.894783 TCAAATTCATTTATTTTGTTTGCATGG 57.105 25.926 0.00 0.00 32.64 3.66
2015 2338 9.896263 GGTCAAATTCATTTATTTTGTTTGCAT 57.104 25.926 0.00 0.00 32.64 3.96
2016 2339 8.896744 TGGTCAAATTCATTTATTTTGTTTGCA 58.103 25.926 0.00 0.00 32.64 4.08
2017 2340 9.384682 CTGGTCAAATTCATTTATTTTGTTTGC 57.615 29.630 0.00 0.00 32.64 3.68
2018 2341 9.881529 CCTGGTCAAATTCATTTATTTTGTTTG 57.118 29.630 0.00 0.00 32.64 2.93
2019 2342 9.844257 TCCTGGTCAAATTCATTTATTTTGTTT 57.156 25.926 0.00 0.00 32.64 2.83
2022 2345 9.101655 GGATCCTGGTCAAATTCATTTATTTTG 57.898 33.333 3.84 0.00 32.24 2.44
2024 2347 8.480501 CAGGATCCTGGTCAAATTCATTTATTT 58.519 33.333 31.14 0.00 40.17 1.40
2041 2364 3.201290 GTGTGCTGATTACAGGATCCTG 58.799 50.000 35.55 35.55 45.40 3.86
2042 2365 2.840038 TGTGTGCTGATTACAGGATCCT 59.160 45.455 9.02 9.02 45.40 3.24
2043 2366 3.266510 TGTGTGCTGATTACAGGATCC 57.733 47.619 2.48 2.48 45.40 3.36
2044 2367 6.925610 TTAATGTGTGCTGATTACAGGATC 57.074 37.500 0.00 0.00 45.40 3.36
2046 2369 6.000840 TGTTTAATGTGTGCTGATTACAGGA 58.999 36.000 0.00 0.00 43.62 3.86
2047 2370 6.252967 TGTTTAATGTGTGCTGATTACAGG 57.747 37.500 0.00 0.00 43.62 4.00
2048 2371 9.838975 TTATTGTTTAATGTGTGCTGATTACAG 57.161 29.630 0.00 0.00 45.91 2.74
2074 2397 9.877178 AATCTCTTCGACATTCTACAGTTAAAT 57.123 29.630 0.00 0.00 0.00 1.40
2075 2398 9.706691 AAATCTCTTCGACATTCTACAGTTAAA 57.293 29.630 0.00 0.00 0.00 1.52
2078 2401 8.304596 TGTAAATCTCTTCGACATTCTACAGTT 58.695 33.333 0.00 0.00 0.00 3.16
2079 2402 7.827701 TGTAAATCTCTTCGACATTCTACAGT 58.172 34.615 0.00 0.00 0.00 3.55
2080 2403 8.689251 TTGTAAATCTCTTCGACATTCTACAG 57.311 34.615 0.00 0.00 0.00 2.74
2081 2404 8.304596 ACTTGTAAATCTCTTCGACATTCTACA 58.695 33.333 0.00 0.00 0.00 2.74
2082 2405 8.690680 ACTTGTAAATCTCTTCGACATTCTAC 57.309 34.615 0.00 0.00 0.00 2.59
2084 2407 8.091449 AGAACTTGTAAATCTCTTCGACATTCT 58.909 33.333 0.00 0.00 0.00 2.40
2085 2408 8.245701 AGAACTTGTAAATCTCTTCGACATTC 57.754 34.615 0.00 0.00 0.00 2.67
2132 2457 6.263842 CAGATTATGTGACACTAATGGGCAAT 59.736 38.462 7.20 0.00 0.00 3.56
2134 2459 5.125356 CAGATTATGTGACACTAATGGGCA 58.875 41.667 7.20 0.00 0.00 5.36
2135 2460 5.126067 ACAGATTATGTGACACTAATGGGC 58.874 41.667 7.20 0.00 41.91 5.36
2136 2461 9.996554 TTATACAGATTATGTGACACTAATGGG 57.003 33.333 7.20 5.76 43.80 4.00
2175 2500 3.879998 ACCCGGCATTTCTTTTGTTTTT 58.120 36.364 0.00 0.00 0.00 1.94
2192 2517 9.743057 TTTAATCATTAAAGCATAATGAACCCG 57.257 29.630 21.50 0.97 44.18 5.28
2201 2526 9.569122 GGGTCTACCTTTAATCATTAAAGCATA 57.431 33.333 20.50 14.54 46.75 3.14
2202 2527 8.058847 TGGGTCTACCTTTAATCATTAAAGCAT 58.941 33.333 20.50 14.25 46.75 3.79
2203 2528 7.406916 TGGGTCTACCTTTAATCATTAAAGCA 58.593 34.615 20.50 10.75 46.75 3.91
2204 2529 7.875327 TGGGTCTACCTTTAATCATTAAAGC 57.125 36.000 20.50 9.29 46.75 3.51
2206 2531 7.836685 TGCATGGGTCTACCTTTAATCATTAAA 59.163 33.333 2.56 2.56 41.11 1.52
2207 2532 7.350382 TGCATGGGTCTACCTTTAATCATTAA 58.650 34.615 0.00 0.00 41.11 1.40
2208 2533 6.905736 TGCATGGGTCTACCTTTAATCATTA 58.094 36.000 0.00 0.00 41.11 1.90
2209 2534 5.765510 TGCATGGGTCTACCTTTAATCATT 58.234 37.500 0.00 0.00 41.11 2.57
2210 2535 5.387113 TGCATGGGTCTACCTTTAATCAT 57.613 39.130 0.00 0.00 41.11 2.45
2211 2536 4.853468 TGCATGGGTCTACCTTTAATCA 57.147 40.909 0.00 0.00 41.11 2.57
2212 2537 5.885912 TCTTTGCATGGGTCTACCTTTAATC 59.114 40.000 0.00 0.00 41.11 1.75
2213 2538 5.826643 TCTTTGCATGGGTCTACCTTTAAT 58.173 37.500 0.00 0.00 41.11 1.40
2214 2539 5.249780 TCTTTGCATGGGTCTACCTTTAA 57.750 39.130 0.00 0.00 41.11 1.52
2215 2540 4.919774 TCTTTGCATGGGTCTACCTTTA 57.080 40.909 0.00 0.00 41.11 1.85
2216 2541 3.806949 TCTTTGCATGGGTCTACCTTT 57.193 42.857 0.00 0.00 41.11 3.11
2217 2542 3.806949 TTCTTTGCATGGGTCTACCTT 57.193 42.857 0.00 0.00 41.11 3.50
2218 2543 3.806949 TTTCTTTGCATGGGTCTACCT 57.193 42.857 0.00 0.00 41.11 3.08
2219 2544 5.405935 AATTTTCTTTGCATGGGTCTACC 57.594 39.130 0.00 0.00 40.81 3.18
2220 2545 8.250332 TCATTAATTTTCTTTGCATGGGTCTAC 58.750 33.333 0.00 0.00 0.00 2.59
2221 2546 8.359875 TCATTAATTTTCTTTGCATGGGTCTA 57.640 30.769 0.00 0.00 0.00 2.59
2222 2547 7.243604 TCATTAATTTTCTTTGCATGGGTCT 57.756 32.000 0.00 0.00 0.00 3.85
2223 2548 7.903995 TTCATTAATTTTCTTTGCATGGGTC 57.096 32.000 0.00 0.00 0.00 4.46
2224 2549 8.866970 AATTCATTAATTTTCTTTGCATGGGT 57.133 26.923 0.00 0.00 30.98 4.51
2225 2550 9.562583 CAAATTCATTAATTTTCTTTGCATGGG 57.437 29.630 0.00 0.00 41.50 4.00
2229 2554 9.334947 TGGTCAAATTCATTAATTTTCTTTGCA 57.665 25.926 0.00 0.00 41.50 4.08
2230 2555 9.815936 CTGGTCAAATTCATTAATTTTCTTTGC 57.184 29.630 0.00 0.00 41.50 3.68
2237 2562 9.880157 CAGGATTCTGGTCAAATTCATTAATTT 57.120 29.630 0.00 0.00 39.95 1.82
2238 2563 9.039165 ACAGGATTCTGGTCAAATTCATTAATT 57.961 29.630 5.84 0.00 44.99 1.40
2239 2564 8.599624 ACAGGATTCTGGTCAAATTCATTAAT 57.400 30.769 5.84 0.00 44.99 1.40
2240 2565 9.527157 TTACAGGATTCTGGTCAAATTCATTAA 57.473 29.630 5.84 0.00 44.99 1.40
2241 2566 9.699410 ATTACAGGATTCTGGTCAAATTCATTA 57.301 29.630 5.84 0.00 44.99 1.90
2242 2567 8.599624 ATTACAGGATTCTGGTCAAATTCATT 57.400 30.769 5.84 0.00 44.99 2.57
2243 2568 7.835682 TGATTACAGGATTCTGGTCAAATTCAT 59.164 33.333 5.84 0.00 44.99 2.57
2244 2569 7.174413 TGATTACAGGATTCTGGTCAAATTCA 58.826 34.615 5.84 0.00 44.99 2.57
2245 2570 7.630242 TGATTACAGGATTCTGGTCAAATTC 57.370 36.000 5.84 0.00 44.99 2.17
2246 2571 7.636150 CTGATTACAGGATTCTGGTCAAATT 57.364 36.000 5.84 0.00 44.99 1.82
2262 2587 7.971183 TGTTGCTTAATGTGTACTGATTACA 57.029 32.000 0.00 0.00 38.45 2.41
2263 2588 9.840427 AATTGTTGCTTAATGTGTACTGATTAC 57.160 29.630 0.00 0.00 0.00 1.89
2294 2619 9.084164 GCTTTTAAATCTCTTCGACATACTACA 57.916 33.333 0.00 0.00 0.00 2.74
2295 2620 9.303537 AGCTTTTAAATCTCTTCGACATACTAC 57.696 33.333 0.00 0.00 0.00 2.73
2296 2621 9.517609 GAGCTTTTAAATCTCTTCGACATACTA 57.482 33.333 1.77 0.00 0.00 1.82
2297 2622 8.254508 AGAGCTTTTAAATCTCTTCGACATACT 58.745 33.333 5.36 0.00 33.75 2.12
2298 2623 8.413899 AGAGCTTTTAAATCTCTTCGACATAC 57.586 34.615 5.36 0.00 33.75 2.39
2299 2624 9.517609 GTAGAGCTTTTAAATCTCTTCGACATA 57.482 33.333 14.91 0.00 38.14 2.29
2300 2625 8.035394 TGTAGAGCTTTTAAATCTCTTCGACAT 58.965 33.333 14.91 0.00 38.14 3.06
2301 2626 7.375834 TGTAGAGCTTTTAAATCTCTTCGACA 58.624 34.615 14.91 11.05 38.14 4.35
2302 2627 7.755822 TCTGTAGAGCTTTTAAATCTCTTCGAC 59.244 37.037 14.91 8.97 38.14 4.20
2303 2628 7.827701 TCTGTAGAGCTTTTAAATCTCTTCGA 58.172 34.615 14.91 9.64 38.14 3.71
2304 2629 7.971168 TCTCTGTAGAGCTTTTAAATCTCTTCG 59.029 37.037 14.91 7.96 41.80 3.79
2305 2630 9.646427 TTCTCTGTAGAGCTTTTAAATCTCTTC 57.354 33.333 14.91 11.10 41.80 2.87
2313 2638 9.561069 ACTTCAATTTCTCTGTAGAGCTTTTAA 57.439 29.630 4.01 0.00 41.80 1.52
2314 2639 8.993121 CACTTCAATTTCTCTGTAGAGCTTTTA 58.007 33.333 4.01 0.00 41.80 1.52
2315 2640 7.716998 TCACTTCAATTTCTCTGTAGAGCTTTT 59.283 33.333 4.01 0.00 41.80 2.27
2316 2641 7.220030 TCACTTCAATTTCTCTGTAGAGCTTT 58.780 34.615 4.01 0.00 41.80 3.51
2317 2642 6.763355 TCACTTCAATTTCTCTGTAGAGCTT 58.237 36.000 4.01 0.00 41.80 3.74
2318 2643 6.352016 TCACTTCAATTTCTCTGTAGAGCT 57.648 37.500 4.01 0.00 41.80 4.09
2319 2644 6.593382 ACATCACTTCAATTTCTCTGTAGAGC 59.407 38.462 4.01 0.00 41.80 4.09
2320 2645 9.814899 ATACATCACTTCAATTTCTCTGTAGAG 57.185 33.333 2.45 2.45 43.36 2.43
2323 2648 8.668353 GCAATACATCACTTCAATTTCTCTGTA 58.332 33.333 0.00 0.00 0.00 2.74
2324 2649 7.362401 GGCAATACATCACTTCAATTTCTCTGT 60.362 37.037 0.00 0.00 0.00 3.41
2325 2650 6.971184 GGCAATACATCACTTCAATTTCTCTG 59.029 38.462 0.00 0.00 0.00 3.35
2326 2651 6.096001 GGGCAATACATCACTTCAATTTCTCT 59.904 38.462 0.00 0.00 0.00 3.10
2327 2652 6.127647 TGGGCAATACATCACTTCAATTTCTC 60.128 38.462 0.00 0.00 0.00 2.87
2328 2653 5.716228 TGGGCAATACATCACTTCAATTTCT 59.284 36.000 0.00 0.00 0.00 2.52
2329 2654 5.964758 TGGGCAATACATCACTTCAATTTC 58.035 37.500 0.00 0.00 0.00 2.17
2330 2655 5.999205 TGGGCAATACATCACTTCAATTT 57.001 34.783 0.00 0.00 0.00 1.82
2331 2656 6.549433 AATGGGCAATACATCACTTCAATT 57.451 33.333 0.00 0.00 0.00 2.32
2332 2657 6.835488 ACTAATGGGCAATACATCACTTCAAT 59.165 34.615 0.00 0.00 0.00 2.57
2333 2658 6.095300 CACTAATGGGCAATACATCACTTCAA 59.905 38.462 0.00 0.00 0.00 2.69
2334 2659 5.589855 CACTAATGGGCAATACATCACTTCA 59.410 40.000 0.00 0.00 0.00 3.02
2335 2660 5.590259 ACACTAATGGGCAATACATCACTTC 59.410 40.000 0.00 0.00 0.00 3.01
2336 2661 5.509498 ACACTAATGGGCAATACATCACTT 58.491 37.500 0.00 0.00 0.00 3.16
2337 2662 5.116084 ACACTAATGGGCAATACATCACT 57.884 39.130 0.00 0.00 0.00 3.41
2338 2663 4.881273 TGACACTAATGGGCAATACATCAC 59.119 41.667 0.00 0.00 0.00 3.06
2339 2664 4.881273 GTGACACTAATGGGCAATACATCA 59.119 41.667 0.00 0.00 0.00 3.07
2340 2665 4.881273 TGTGACACTAATGGGCAATACATC 59.119 41.667 7.20 0.00 0.00 3.06
2341 2666 4.854173 TGTGACACTAATGGGCAATACAT 58.146 39.130 7.20 0.00 0.00 2.29
2342 2667 4.293662 TGTGACACTAATGGGCAATACA 57.706 40.909 7.20 0.00 0.00 2.29
2343 2668 6.935741 TTATGTGACACTAATGGGCAATAC 57.064 37.500 7.20 0.00 0.00 1.89
2344 2669 7.445096 CAGATTATGTGACACTAATGGGCAATA 59.555 37.037 7.20 0.00 0.00 1.90
2345 2670 6.263842 CAGATTATGTGACACTAATGGGCAAT 59.736 38.462 7.20 0.00 0.00 3.56
2346 2671 5.589855 CAGATTATGTGACACTAATGGGCAA 59.410 40.000 7.20 0.00 0.00 4.52
2347 2672 5.125356 CAGATTATGTGACACTAATGGGCA 58.875 41.667 7.20 0.00 0.00 5.36
2348 2673 5.126067 ACAGATTATGTGACACTAATGGGC 58.874 41.667 7.20 0.00 41.91 5.36
2349 2674 9.996554 TTATACAGATTATGTGACACTAATGGG 57.003 33.333 7.20 5.76 43.80 4.00
2386 2711 8.661352 ATGAATCCGTCATTTCTTTTGTTTTT 57.339 26.923 0.00 0.00 45.13 1.94
2400 2725 5.813157 TCATTAAAGCGTAATGAATCCGTCA 59.187 36.000 18.17 0.46 39.96 4.35
2401 2726 6.281848 TCATTAAAGCGTAATGAATCCGTC 57.718 37.500 18.17 0.00 39.96 4.79
2402 2727 6.861065 ATCATTAAAGCGTAATGAATCCGT 57.139 33.333 21.99 9.05 44.18 4.69
2509 2834 1.496060 TCCGTACGGAGGGAGTACTA 58.504 55.000 32.61 6.92 41.51 1.82
2510 2835 0.620556 TTCCGTACGGAGGGAGTACT 59.379 55.000 33.67 0.00 46.06 2.73
2524 2849 0.317160 TGAGCGTCAACTGATTCCGT 59.683 50.000 0.00 0.00 0.00 4.69
2546 2871 2.785540 TGGATGTATCAAGCACTGCA 57.214 45.000 3.30 0.00 0.00 4.41
2555 2880 4.135747 TGTCGCTCAAATGGATGTATCA 57.864 40.909 0.00 0.00 0.00 2.15
2589 2914 7.283127 GCATTTCATTAAGTCATACTTCCTCCA 59.717 37.037 0.00 0.00 39.51 3.86
2623 2948 5.810587 TCACGGCACTTAGAGTCATATTTTC 59.189 40.000 0.00 0.00 0.00 2.29
2627 2952 3.243569 GCTCACGGCACTTAGAGTCATAT 60.244 47.826 0.00 0.00 41.35 1.78
2628 2953 2.099263 GCTCACGGCACTTAGAGTCATA 59.901 50.000 0.00 0.00 41.35 2.15
2629 2954 1.134965 GCTCACGGCACTTAGAGTCAT 60.135 52.381 0.00 0.00 41.35 3.06
2630 2955 0.243907 GCTCACGGCACTTAGAGTCA 59.756 55.000 0.00 0.00 41.35 3.41
2631 2956 3.037485 GCTCACGGCACTTAGAGTC 57.963 57.895 0.00 0.00 41.35 3.36
2714 3076 6.540914 ACTCAAAATCTACGAACCTCAAAACA 59.459 34.615 0.00 0.00 0.00 2.83
2740 3102 8.768957 TCTTCAGATCAACTACTCTGATTTTG 57.231 34.615 3.33 0.00 45.34 2.44
2802 3182 7.970061 GTCACACACAATTGCATTAGTTATGAT 59.030 33.333 5.05 0.00 36.26 2.45
2806 3186 6.625873 TGTCACACACAATTGCATTAGTTA 57.374 33.333 5.05 0.00 29.30 2.24
2862 3242 6.001460 TCAGTGGTTCAAAGGTAGTATTTGG 58.999 40.000 0.00 0.00 38.04 3.28
2912 3390 5.945191 TGGTTTGCATCAAGAATATCACAGA 59.055 36.000 0.00 0.00 0.00 3.41
3011 3712 6.059787 ACAGGAGAAAGAGTATTCTTGCAT 57.940 37.500 8.57 0.00 42.80 3.96
3015 3716 6.708054 CACACAACAGGAGAAAGAGTATTCTT 59.292 38.462 0.00 0.00 45.51 2.52
3142 3843 2.674852 CACAAACTGCTATCGCTGTCAT 59.325 45.455 2.21 0.00 45.94 3.06
3143 3844 2.068519 CACAAACTGCTATCGCTGTCA 58.931 47.619 2.21 0.00 45.94 3.58
3144 3845 1.201965 GCACAAACTGCTATCGCTGTC 60.202 52.381 2.21 0.00 45.94 3.51
3146 3847 0.097674 GGCACAAACTGCTATCGCTG 59.902 55.000 0.00 0.00 46.25 5.18
3147 3848 1.026718 GGGCACAAACTGCTATCGCT 61.027 55.000 0.00 0.00 46.25 4.93
3148 3849 1.305219 TGGGCACAAACTGCTATCGC 61.305 55.000 0.00 0.00 46.25 4.58
3149 3850 1.382522 ATGGGCACAAACTGCTATCG 58.617 50.000 0.00 0.00 46.25 2.92
3202 3905 3.815401 CAGGGTACACAGAACAGGAAAAG 59.185 47.826 0.00 0.00 0.00 2.27
3275 3978 4.659088 CACACAGCTCATTTTCTGCATAG 58.341 43.478 0.00 0.00 33.80 2.23
3472 5711 8.553459 ACTCAAACTTGTAATGAACCTATCAG 57.447 34.615 0.00 0.00 42.53 2.90
3707 5956 6.549912 TGATGAGCATACTGTATTGAATGC 57.450 37.500 4.68 4.68 43.97 3.56
3797 6137 6.550854 ACATTCAGAAGGGAAAACATTCAGAA 59.449 34.615 0.00 2.94 45.15 3.02
3799 6139 6.336842 ACATTCAGAAGGGAAAACATTCAG 57.663 37.500 0.00 0.00 42.12 3.02
3800 6140 6.729690 AACATTCAGAAGGGAAAACATTCA 57.270 33.333 0.00 0.00 42.12 2.57
3801 6141 7.928167 AGAAAACATTCAGAAGGGAAAACATTC 59.072 33.333 0.00 0.00 40.07 2.67
3802 6142 7.795047 AGAAAACATTCAGAAGGGAAAACATT 58.205 30.769 0.00 0.00 0.00 2.71
3803 6143 7.365497 AGAAAACATTCAGAAGGGAAAACAT 57.635 32.000 0.00 0.00 0.00 2.71
3804 6144 6.790232 AGAAAACATTCAGAAGGGAAAACA 57.210 33.333 0.00 0.00 0.00 2.83
3805 6145 7.264947 TGAAGAAAACATTCAGAAGGGAAAAC 58.735 34.615 0.00 0.00 32.96 2.43
3806 6146 7.416964 TGAAGAAAACATTCAGAAGGGAAAA 57.583 32.000 0.00 0.00 32.96 2.29
3925 6280 4.632153 ACATGTTGTACTCCAGAGTGTTC 58.368 43.478 10.59 2.31 42.52 3.18
3960 6315 9.753674 TCAGGAACCTTCTCATAAAAACATATT 57.246 29.630 0.00 0.00 0.00 1.28
4021 6376 5.618640 GCACTAAGCAGAATTCAGAAGGTTG 60.619 44.000 8.44 0.00 44.79 3.77
4232 6587 2.603892 GCAGCGATTGATAGCACAATGG 60.604 50.000 8.15 8.17 40.03 3.16
4235 6590 1.667212 CAGCAGCGATTGATAGCACAA 59.333 47.619 0.00 0.00 35.48 3.33
4283 6638 4.520111 AGCTGATCTCTAGTGTATCTGCTG 59.480 45.833 22.35 0.00 46.59 4.41
4686 7041 9.223099 TCCACGAACGATCATACTAAGATTATA 57.777 33.333 0.14 0.00 0.00 0.98
4864 7219 7.405469 TTTCATGAATCCAACAATTCAAACG 57.595 32.000 9.40 0.00 45.91 3.60
4959 7315 9.707957 ATATTTGGGATGAAAACACCATAGTTA 57.292 29.630 0.00 0.00 32.18 2.24
4989 7345 8.858094 ACTCTTATATTTAGTTTACGGAGGGAG 58.142 37.037 0.00 0.00 0.00 4.30
4990 7346 8.636213 CACTCTTATATTTAGTTTACGGAGGGA 58.364 37.037 0.00 0.00 0.00 4.20
4991 7347 8.636213 TCACTCTTATATTTAGTTTACGGAGGG 58.364 37.037 0.00 0.00 0.00 4.30
4992 7348 9.680315 CTCACTCTTATATTTAGTTTACGGAGG 57.320 37.037 0.00 0.00 0.00 4.30
5010 7366 8.893727 GCCACAAATTATAACATACTCACTCTT 58.106 33.333 0.00 0.00 0.00 2.85
5011 7367 7.499232 GGCCACAAATTATAACATACTCACTCT 59.501 37.037 0.00 0.00 0.00 3.24
5012 7368 7.282224 TGGCCACAAATTATAACATACTCACTC 59.718 37.037 0.00 0.00 0.00 3.51
5013 7369 7.116075 TGGCCACAAATTATAACATACTCACT 58.884 34.615 0.00 0.00 0.00 3.41
5014 7370 7.328277 TGGCCACAAATTATAACATACTCAC 57.672 36.000 0.00 0.00 0.00 3.51
5015 7371 7.831690 TCTTGGCCACAAATTATAACATACTCA 59.168 33.333 3.88 0.00 35.89 3.41
5016 7372 8.220755 TCTTGGCCACAAATTATAACATACTC 57.779 34.615 3.88 0.00 35.89 2.59
5017 7373 7.285401 CCTCTTGGCCACAAATTATAACATACT 59.715 37.037 3.88 0.00 35.89 2.12
5018 7374 7.425606 CCTCTTGGCCACAAATTATAACATAC 58.574 38.462 3.88 0.00 35.89 2.39
5019 7375 6.549364 CCCTCTTGGCCACAAATTATAACATA 59.451 38.462 3.88 0.00 35.89 2.29
5020 7376 5.363580 CCCTCTTGGCCACAAATTATAACAT 59.636 40.000 3.88 0.00 35.89 2.71
5021 7377 4.709397 CCCTCTTGGCCACAAATTATAACA 59.291 41.667 3.88 0.00 35.89 2.41
5022 7378 4.099419 CCCCTCTTGGCCACAAATTATAAC 59.901 45.833 3.88 0.00 35.89 1.89
5023 7379 4.264623 ACCCCTCTTGGCCACAAATTATAA 60.265 41.667 3.88 0.00 35.89 0.98
5024 7380 3.270960 ACCCCTCTTGGCCACAAATTATA 59.729 43.478 3.88 0.00 35.89 0.98
5025 7381 2.044353 ACCCCTCTTGGCCACAAATTAT 59.956 45.455 3.88 0.00 35.89 1.28
5026 7382 1.431243 ACCCCTCTTGGCCACAAATTA 59.569 47.619 3.88 0.00 35.89 1.40
5027 7383 0.190815 ACCCCTCTTGGCCACAAATT 59.809 50.000 3.88 0.00 35.89 1.82
5079 7435 9.369904 GGCACATTTATTCAACTTGAACATAAT 57.630 29.630 6.35 4.58 39.45 1.28
5080 7436 8.584157 AGGCACATTTATTCAACTTGAACATAA 58.416 29.630 6.35 0.68 39.45 1.90
5083 7439 6.403866 AGGCACATTTATTCAACTTGAACA 57.596 33.333 6.35 0.00 39.45 3.18
5084 7440 7.593825 AGTAGGCACATTTATTCAACTTGAAC 58.406 34.615 6.35 0.00 39.45 3.18
5086 7442 8.892723 CATAGTAGGCACATTTATTCAACTTGA 58.107 33.333 0.00 0.00 0.00 3.02
5087 7443 8.677300 ACATAGTAGGCACATTTATTCAACTTG 58.323 33.333 0.00 0.00 0.00 3.16
5090 7446 8.208718 TGACATAGTAGGCACATTTATTCAAC 57.791 34.615 0.00 0.00 0.00 3.18
5091 7447 8.978874 ATGACATAGTAGGCACATTTATTCAA 57.021 30.769 0.00 0.00 0.00 2.69
5098 7454 6.205464 GCACATTATGACATAGTAGGCACATT 59.795 38.462 0.00 0.00 0.00 2.71
5100 7456 5.056480 GCACATTATGACATAGTAGGCACA 58.944 41.667 0.00 0.00 0.00 4.57
5101 7457 5.300752 AGCACATTATGACATAGTAGGCAC 58.699 41.667 0.00 0.00 0.00 5.01
5227 7585 4.155644 CAGCTCCTCTTTGAAATGTCCTTC 59.844 45.833 0.00 0.00 0.00 3.46
5230 7588 3.679389 TCAGCTCCTCTTTGAAATGTCC 58.321 45.455 0.00 0.00 0.00 4.02
5323 7681 5.163237 TGGGACTAAAACTTCTTGCACTAGT 60.163 40.000 0.00 0.00 0.00 2.57
5341 7699 2.799126 TGTTTCAACAGTGTGGGACT 57.201 45.000 0.00 0.00 34.30 3.85
5430 7789 2.351726 CAGCCCGTTACTTGAGCAATAC 59.648 50.000 0.00 0.00 0.00 1.89
5443 7802 3.644966 TTCATTAATCTCCAGCCCGTT 57.355 42.857 0.00 0.00 0.00 4.44
5476 7835 6.688385 CCGCTTCTAATATTGAACACAACATG 59.312 38.462 0.00 0.00 0.00 3.21
5521 7883 3.938963 TGTTTGATCAAGATTCCGCTACC 59.061 43.478 8.41 0.00 0.00 3.18
5523 7885 4.391830 GTGTGTTTGATCAAGATTCCGCTA 59.608 41.667 8.41 0.00 0.00 4.26
5540 7902 8.380099 TCAAACATAATTAGGTAGAGGTGTGTT 58.620 33.333 2.74 0.00 0.00 3.32
5573 7935 7.493499 AATACCCATCAATCCATTTGTTTGA 57.507 32.000 0.00 0.00 36.65 2.69
5579 7941 6.443206 TCACCAAAATACCCATCAATCCATTT 59.557 34.615 0.00 0.00 0.00 2.32
5598 7960 8.739039 CAAGTAACTGATGGATTTAATCACCAA 58.261 33.333 7.29 0.00 37.24 3.67
5599 7961 8.106462 TCAAGTAACTGATGGATTTAATCACCA 58.894 33.333 7.29 0.00 38.09 4.17
5601 7963 9.383519 TCTCAAGTAACTGATGGATTTAATCAC 57.616 33.333 7.29 0.00 30.94 3.06
5602 7964 9.605275 CTCTCAAGTAACTGATGGATTTAATCA 57.395 33.333 7.29 0.00 33.13 2.57
5604 7966 8.049117 TGCTCTCAAGTAACTGATGGATTTAAT 58.951 33.333 0.00 0.00 0.00 1.40
5645 8007 9.832445 CCCATAAATACTAGTAACAGACACAAT 57.168 33.333 6.70 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.