Multiple sequence alignment - TraesCS2B01G422500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G422500 chr2B 100.000 5551 0 0 1 5551 607949285 607954835 0.000000e+00 10251.0
1 TraesCS2B01G422500 chr2B 85.619 299 43 0 4084 4382 25672937 25672639 1.160000e-81 315.0
2 TraesCS2B01G422500 chr2B 90.000 150 15 0 2171 2320 25687530 25687381 1.580000e-45 195.0
3 TraesCS2B01G422500 chr2B 93.023 43 3 0 997 1039 25689002 25688960 4.640000e-06 63.9
4 TraesCS2B01G422500 chr2D 88.662 2011 101 51 49 1984 516366374 516368332 0.000000e+00 2333.0
5 TraesCS2B01G422500 chr2D 90.999 1422 92 21 3199 4590 516369677 516371092 0.000000e+00 1884.0
6 TraesCS2B01G422500 chr2D 92.993 685 37 7 2171 2847 516368457 516369138 0.000000e+00 989.0
7 TraesCS2B01G422500 chr2D 83.227 626 63 22 4614 5212 516371082 516371692 2.280000e-148 536.0
8 TraesCS2B01G422500 chr2D 90.782 358 30 3 2844 3199 516369174 516369530 5.030000e-130 475.0
9 TraesCS2B01G422500 chr2D 87.086 302 39 0 4084 4385 14105285 14104984 5.320000e-90 342.0
10 TraesCS2B01G422500 chr2D 82.817 355 28 16 5209 5551 516374202 516374535 2.530000e-73 287.0
11 TraesCS2B01G422500 chr2D 90.667 150 14 0 2171 2320 14106351 14106202 3.390000e-47 200.0
12 TraesCS2B01G422500 chr2D 80.567 247 42 4 3966 4209 39320843 39320600 9.500000e-43 185.0
13 TraesCS2B01G422500 chr2D 94.030 67 3 1 4745 4810 516371243 516371309 3.540000e-17 100.0
14 TraesCS2B01G422500 chr2D 97.297 37 1 0 997 1033 14107629 14107593 4.640000e-06 63.9
15 TraesCS2B01G422500 chr2A 90.664 1778 131 24 2844 4590 660222922 660224695 0.000000e+00 2331.0
16 TraesCS2B01G422500 chr2A 87.237 1567 91 50 22 1528 660218507 660220024 0.000000e+00 1685.0
17 TraesCS2B01G422500 chr2A 92.287 726 41 8 4832 5551 660224875 660225591 0.000000e+00 1016.0
18 TraesCS2B01G422500 chr2A 86.867 731 46 27 2130 2847 660222193 660222886 0.000000e+00 773.0
19 TraesCS2B01G422500 chr2A 91.148 305 10 6 1523 1810 660221558 660221862 1.120000e-106 398.0
20 TraesCS2B01G422500 chr2A 87.086 302 39 0 4084 4385 16475414 16475113 5.320000e-90 342.0
21 TraesCS2B01G422500 chr2A 92.063 189 7 4 1798 1981 660221877 660222062 5.520000e-65 259.0
22 TraesCS2B01G422500 chr2A 90.667 150 14 0 2171 2320 16478000 16477851 3.390000e-47 200.0
23 TraesCS2B01G422500 chr2A 84.466 206 24 7 4614 4813 660224685 660224888 4.390000e-46 196.0
24 TraesCS2B01G422500 chr2A 85.075 67 7 2 997 1063 16479348 16479285 1.290000e-06 65.8
25 TraesCS2B01G422500 chr2A 100.000 29 0 0 243 271 22734630 22734602 3.000000e-03 54.7
26 TraesCS2B01G422500 chr2A 100.000 29 0 0 243 271 22743674 22743702 3.000000e-03 54.7
27 TraesCS2B01G422500 chr2A 100.000 29 0 0 243 271 22852859 22852887 3.000000e-03 54.7
28 TraesCS2B01G422500 chr6B 86.158 419 52 5 3965 4380 490255652 490256067 1.100000e-121 448.0
29 TraesCS2B01G422500 chr6D 84.988 433 59 5 3951 4380 330157621 330157192 8.540000e-118 435.0
30 TraesCS2B01G422500 chr6D 87.866 239 28 1 1393 1630 330158567 330158329 4.230000e-71 279.0
31 TraesCS2B01G422500 chr6A 84.758 433 60 5 3951 4380 469432340 469431911 3.970000e-116 429.0
32 TraesCS2B01G422500 chr7D 79.424 243 38 11 3966 4202 528080135 528080371 1.600000e-35 161.0
33 TraesCS2B01G422500 chr3A 78.448 232 41 9 1387 1614 743379982 743379756 5.800000e-30 143.0
34 TraesCS2B01G422500 chr3B 78.017 232 42 9 1387 1614 820905705 820905479 2.700000e-28 137.0
35 TraesCS2B01G422500 chr3D 80.702 171 29 4 1446 1614 609741250 609741082 4.510000e-26 130.0
36 TraesCS2B01G422500 chrUn 100.000 29 0 0 243 271 146977605 146977633 3.000000e-03 54.7
37 TraesCS2B01G422500 chrUn 100.000 29 0 0 243 271 154158468 154158496 3.000000e-03 54.7
38 TraesCS2B01G422500 chrUn 100.000 29 0 0 243 271 391603991 391603963 3.000000e-03 54.7
39 TraesCS2B01G422500 chr1A 100.000 29 0 0 243 271 22546274 22546302 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G422500 chr2B 607949285 607954835 5550 False 10251.000000 10251 100.000000 1 5551 1 chr2B.!!$F1 5550
1 TraesCS2B01G422500 chr2D 516366374 516374535 8161 False 943.428571 2333 89.072857 49 5551 7 chr2D.!!$F1 5502
2 TraesCS2B01G422500 chr2D 14104984 14107629 2645 True 201.966667 342 91.683333 997 4385 3 chr2D.!!$R2 3388
3 TraesCS2B01G422500 chr2A 660218507 660225591 7084 False 951.142857 2331 89.247429 22 5551 7 chr2A.!!$F3 5529
4 TraesCS2B01G422500 chr2A 16475113 16479348 4235 True 202.600000 342 87.609333 997 4385 3 chr2A.!!$R2 3388
5 TraesCS2B01G422500 chr6D 330157192 330158567 1375 True 357.000000 435 86.427000 1393 4380 2 chr6D.!!$R1 2987

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
456 474 0.099436 GCCATTACTCGTACGTCCGT 59.901 55.0 16.05 13.03 0.00 4.69 F
2006 4407 0.038618 TGTAGTACCACGCTGCTGTG 60.039 55.0 14.65 14.65 39.60 3.66 F
2090 4491 0.026803 GGCGCAGATCATCGTTTGTC 59.973 55.0 10.83 0.00 0.00 3.18 F
2351 4790 0.105964 TCGCTGCAGTTACCACACTT 59.894 50.0 16.64 0.00 0.00 3.16 F
2362 4801 0.108585 ACCACACTTGTTCGCCTGAT 59.891 50.0 0.00 0.00 0.00 2.90 F
2368 4807 0.449388 CTTGTTCGCCTGATCTTGGC 59.551 55.0 16.82 16.82 46.42 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2071 4472 0.026803 GACAAACGATGATCTGCGCC 59.973 55.000 4.18 0.0 0.00 6.53 R
3870 6567 0.537143 TTGTTGCAATGGAGAGGCGT 60.537 50.000 0.59 0.0 0.00 5.68 R
3919 6642 4.581409 GGAGAGCGGGATATAGATTAGGTC 59.419 50.000 0.00 0.0 0.00 3.85 R
4529 9067 1.098712 ATCTCACTCGAGGAGACGGC 61.099 60.000 26.04 0.0 43.65 5.68 R
4541 9079 1.333177 GGGGCTATCGTCATCTCACT 58.667 55.000 0.00 0.0 0.00 3.41 R
4555 9093 1.000993 AGTCAGTCATCTCGGGGCT 59.999 57.895 0.00 0.0 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.940319 AGTGAACAGAGCGAGTAGTAGA 58.060 45.455 0.00 0.00 0.00 2.59
28 29 4.944930 AGTGAACAGAGCGAGTAGTAGATT 59.055 41.667 0.00 0.00 0.00 2.40
108 110 1.718396 GTACAAGCACGGGTAGAACC 58.282 55.000 0.00 0.00 37.60 3.62
129 143 0.317770 AAAAACATGTGCAGGTCGCG 60.318 50.000 0.00 0.00 46.97 5.87
159 173 0.586802 CGACAGAGGATCGCATCGTA 59.413 55.000 0.00 0.00 42.67 3.43
209 223 5.496387 CGTATACGTATACCTAATCCAGCG 58.504 45.833 30.55 16.62 36.13 5.18
349 367 3.363351 GGACTGACCGGACTCGTT 58.637 61.111 9.46 0.00 33.95 3.85
350 368 1.080705 GGACTGACCGGACTCGTTG 60.081 63.158 9.46 0.00 33.95 4.10
448 466 2.186903 CTGGCCGCCATTACTCGT 59.813 61.111 13.86 0.00 30.82 4.18
456 474 0.099436 GCCATTACTCGTACGTCCGT 59.901 55.000 16.05 13.03 0.00 4.69
458 476 1.268234 CCATTACTCGTACGTCCGTCC 60.268 57.143 16.05 0.00 0.00 4.79
459 477 1.667724 CATTACTCGTACGTCCGTCCT 59.332 52.381 16.05 0.41 0.00 3.85
460 478 1.078709 TTACTCGTACGTCCGTCCTG 58.921 55.000 16.05 0.00 0.00 3.86
462 480 3.392595 CTCGTACGTCCGTCCTGCC 62.393 68.421 16.05 0.00 0.00 4.85
463 481 3.437795 CGTACGTCCGTCCTGCCT 61.438 66.667 7.22 0.00 0.00 4.75
464 482 2.488820 GTACGTCCGTCCTGCCTC 59.511 66.667 0.00 0.00 0.00 4.70
465 483 2.753043 TACGTCCGTCCTGCCTCC 60.753 66.667 0.00 0.00 0.00 4.30
466 484 3.278072 TACGTCCGTCCTGCCTCCT 62.278 63.158 0.00 0.00 0.00 3.69
467 485 4.135153 CGTCCGTCCTGCCTCCTG 62.135 72.222 0.00 0.00 0.00 3.86
468 486 4.459089 GTCCGTCCTGCCTCCTGC 62.459 72.222 0.00 0.00 41.77 4.85
503 521 3.181465 ACATGTCGTTTGTCACCTTCTCT 60.181 43.478 0.00 0.00 0.00 3.10
505 523 2.429250 TGTCGTTTGTCACCTTCTCTCA 59.571 45.455 0.00 0.00 0.00 3.27
543 568 2.199652 CCTTGCAACTTGCCCGGAA 61.200 57.895 0.73 0.00 44.23 4.30
589 617 3.728373 GGGCCGGTCCTTGATGGT 61.728 66.667 20.78 0.00 37.07 3.55
681 709 2.607038 GCCACAGAATCGAACCAAAACC 60.607 50.000 0.00 0.00 0.00 3.27
689 717 6.542370 CAGAATCGAACCAAAACCCATATACT 59.458 38.462 0.00 0.00 0.00 2.12
690 718 7.713507 CAGAATCGAACCAAAACCCATATACTA 59.286 37.037 0.00 0.00 0.00 1.82
691 719 7.931948 AGAATCGAACCAAAACCCATATACTAG 59.068 37.037 0.00 0.00 0.00 2.57
693 721 5.129815 TCGAACCAAAACCCATATACTAGCT 59.870 40.000 0.00 0.00 0.00 3.32
694 722 5.236478 CGAACCAAAACCCATATACTAGCTG 59.764 44.000 0.00 0.00 0.00 4.24
698 728 8.219660 ACCAAAACCCATATACTAGCTGATAT 57.780 34.615 0.00 0.00 0.00 1.63
707 737 3.634568 ACTAGCTGATATCTGACACGC 57.365 47.619 13.33 2.53 0.00 5.34
712 742 0.174617 TGATATCTGACACGCGGCAA 59.825 50.000 12.47 0.00 0.00 4.52
757 808 0.608035 GGCACAAACAAGATCCCCGA 60.608 55.000 0.00 0.00 0.00 5.14
974 1044 0.100861 GAGAGTGAACCGTCGATCCC 59.899 60.000 0.00 0.00 0.00 3.85
1051 1130 3.241530 TGGAGGCCGTCAAGCAGT 61.242 61.111 0.00 0.00 0.00 4.40
1053 1132 2.343758 GAGGCCGTCAAGCAGTCA 59.656 61.111 0.00 0.00 0.00 3.41
1056 1135 2.280797 GCCGTCAAGCAGTCACCA 60.281 61.111 0.00 0.00 0.00 4.17
1092 1180 1.502527 ATGGACGCCCCCAAGGTAAA 61.503 55.000 0.00 0.00 40.04 2.01
1093 1181 1.676635 GGACGCCCCCAAGGTAAAC 60.677 63.158 0.00 0.00 38.26 2.01
1094 1182 1.073548 GACGCCCCCAAGGTAAACA 59.926 57.895 0.00 0.00 38.26 2.83
1096 1184 1.228306 CGCCCCCAAGGTAAACACA 60.228 57.895 0.00 0.00 38.26 3.72
1104 1898 4.404394 CCCCAAGGTAAACACAAACTTCTT 59.596 41.667 0.00 0.00 0.00 2.52
1123 1917 1.186917 TCCCAGTGCCATTTTGCAGG 61.187 55.000 0.00 0.00 43.02 4.85
1130 1924 0.879839 GCCATTTTGCAGGCGTTTGT 60.880 50.000 0.00 0.00 41.70 2.83
1133 1927 2.472816 CATTTTGCAGGCGTTTGTCTT 58.527 42.857 0.00 0.00 0.00 3.01
1134 1928 2.663826 TTTTGCAGGCGTTTGTCTTT 57.336 40.000 0.00 0.00 0.00 2.52
1135 1929 1.919918 TTTGCAGGCGTTTGTCTTTG 58.080 45.000 0.00 0.00 0.00 2.77
1137 1931 1.661509 GCAGGCGTTTGTCTTTGGC 60.662 57.895 0.00 0.00 0.00 4.52
1139 1933 0.314935 CAGGCGTTTGTCTTTGGCAT 59.685 50.000 0.00 0.00 0.00 4.40
1140 1934 0.314935 AGGCGTTTGTCTTTGGCATG 59.685 50.000 0.00 0.00 0.00 4.06
1141 1935 0.667184 GGCGTTTGTCTTTGGCATGG 60.667 55.000 0.00 0.00 0.00 3.66
1148 1942 2.607499 TGTCTTTGGCATGGAAACCAT 58.393 42.857 0.00 0.00 46.37 3.55
1149 1943 2.971330 TGTCTTTGGCATGGAAACCATT 59.029 40.909 0.11 0.00 42.23 3.16
1150 1944 3.244146 TGTCTTTGGCATGGAAACCATTG 60.244 43.478 0.11 0.00 42.23 2.82
1151 1945 2.302445 TCTTTGGCATGGAAACCATTGG 59.698 45.455 0.00 0.00 42.23 3.16
1152 1946 0.324285 TTGGCATGGAAACCATTGGC 59.676 50.000 1.54 14.48 42.23 4.52
1153 1947 0.544833 TGGCATGGAAACCATTGGCT 60.545 50.000 18.63 0.00 42.23 4.75
1155 1949 1.003464 GGCATGGAAACCATTGGCTTT 59.997 47.619 1.54 2.93 42.23 3.51
1156 1950 2.349590 GCATGGAAACCATTGGCTTTC 58.650 47.619 16.22 16.22 42.23 2.62
1157 1951 2.609350 CATGGAAACCATTGGCTTTCG 58.391 47.619 17.17 6.97 42.23 3.46
1158 1952 1.988293 TGGAAACCATTGGCTTTCGA 58.012 45.000 17.17 13.55 0.00 3.71
1159 1953 1.611491 TGGAAACCATTGGCTTTCGAC 59.389 47.619 17.17 9.95 0.00 4.20
1177 1971 2.669391 CGACCTTCAGATTTGCTTTGCC 60.669 50.000 0.00 0.00 0.00 4.52
1258 2052 2.692368 GGTCCTCCTCCCATGGCA 60.692 66.667 6.09 0.00 0.00 4.92
1810 4203 5.580911 GCTTGAGCTTACAAAATTGGTTG 57.419 39.130 0.00 0.00 38.21 3.77
1839 4232 1.865865 ATAATTGCGTCCGTGGCTAG 58.134 50.000 0.00 0.00 0.00 3.42
1840 4233 0.818938 TAATTGCGTCCGTGGCTAGA 59.181 50.000 0.00 0.00 0.00 2.43
1984 4385 6.809689 CACCTCACGTGACACATAAATTAGTA 59.190 38.462 15.76 0.00 46.20 1.82
1985 4386 7.009265 CACCTCACGTGACACATAAATTAGTAG 59.991 40.741 15.76 0.00 46.20 2.57
1986 4387 6.019801 CCTCACGTGACACATAAATTAGTAGC 60.020 42.308 15.76 0.00 0.00 3.58
1987 4388 6.627243 TCACGTGACACATAAATTAGTAGCT 58.373 36.000 15.76 0.00 0.00 3.32
1988 4389 6.530181 TCACGTGACACATAAATTAGTAGCTG 59.470 38.462 15.76 0.00 0.00 4.24
1989 4390 6.310467 CACGTGACACATAAATTAGTAGCTGT 59.690 38.462 10.90 0.00 0.00 4.40
1990 4391 7.486870 CACGTGACACATAAATTAGTAGCTGTA 59.513 37.037 10.90 0.00 0.00 2.74
1991 4392 7.701078 ACGTGACACATAAATTAGTAGCTGTAG 59.299 37.037 6.37 0.00 0.00 2.74
1992 4393 7.701078 CGTGACACATAAATTAGTAGCTGTAGT 59.299 37.037 6.37 0.00 0.00 2.73
1995 4396 9.460906 GACACATAAATTAGTAGCTGTAGTACC 57.539 37.037 0.00 0.00 0.00 3.34
1996 4397 8.974238 ACACATAAATTAGTAGCTGTAGTACCA 58.026 33.333 0.00 0.00 0.00 3.25
1997 4398 9.245962 CACATAAATTAGTAGCTGTAGTACCAC 57.754 37.037 0.00 0.00 0.00 4.16
1998 4399 8.133627 ACATAAATTAGTAGCTGTAGTACCACG 58.866 37.037 0.00 0.00 0.00 4.94
1999 4400 4.564940 ATTAGTAGCTGTAGTACCACGC 57.435 45.455 0.00 0.00 0.00 5.34
2000 4401 2.125773 AGTAGCTGTAGTACCACGCT 57.874 50.000 13.07 13.07 34.38 5.07
2001 4402 1.743958 AGTAGCTGTAGTACCACGCTG 59.256 52.381 16.31 0.00 32.94 5.18
2002 4403 0.454600 TAGCTGTAGTACCACGCTGC 59.545 55.000 16.31 7.93 32.94 5.25
2003 4404 1.215647 GCTGTAGTACCACGCTGCT 59.784 57.895 0.00 0.00 0.00 4.24
2004 4405 1.078759 GCTGTAGTACCACGCTGCTG 61.079 60.000 0.00 0.00 0.00 4.41
2005 4406 0.243907 CTGTAGTACCACGCTGCTGT 59.756 55.000 0.00 0.00 0.00 4.40
2006 4407 0.038618 TGTAGTACCACGCTGCTGTG 60.039 55.000 14.65 14.65 39.60 3.66
2021 4422 3.660111 GTGCAGGTTGGTGCCGTC 61.660 66.667 0.00 0.00 43.28 4.79
2028 4429 2.847234 TTGGTGCCGTCCTGGTCT 60.847 61.111 0.00 0.00 41.21 3.85
2039 4440 2.600729 CCTGGTCTGCCTCCTGCTT 61.601 63.158 0.00 0.00 42.00 3.91
2052 4453 0.393537 CCTGCTTCCCATTTCTCGCT 60.394 55.000 0.00 0.00 0.00 4.93
2071 4472 2.733227 GCTGAAATCCGCAGAAATGTGG 60.733 50.000 1.34 1.34 40.62 4.17
2083 4484 1.002033 GAAATGTGGGCGCAGATCATC 60.002 52.381 13.97 11.44 0.00 2.92
2086 4487 1.815421 GTGGGCGCAGATCATCGTT 60.815 57.895 10.83 0.00 0.00 3.85
2090 4491 0.026803 GGCGCAGATCATCGTTTGTC 59.973 55.000 10.83 0.00 0.00 3.18
2109 4510 3.085119 GCTAGGCCGAGCGGGTTTA 62.085 63.158 22.65 0.00 38.44 2.01
2111 4539 2.948840 CTAGGCCGAGCGGGTTTACG 62.949 65.000 11.30 0.00 38.44 3.18
2120 4548 1.081708 CGGGTTTACGGCTGTTTGC 60.082 57.895 1.99 0.00 41.94 3.68
2133 4561 0.182537 TGTTTGCCATAGCCCGCTAT 59.817 50.000 3.31 3.31 39.60 2.97
2134 4562 1.318576 GTTTGCCATAGCCCGCTATT 58.681 50.000 6.48 0.00 37.16 1.73
2137 4565 2.940994 TGCCATAGCCCGCTATTTAA 57.059 45.000 6.48 0.00 37.16 1.52
2138 4566 3.216187 TGCCATAGCCCGCTATTTAAA 57.784 42.857 6.48 0.00 37.16 1.52
2139 4567 3.556999 TGCCATAGCCCGCTATTTAAAA 58.443 40.909 6.48 0.00 37.16 1.52
2140 4568 4.148838 TGCCATAGCCCGCTATTTAAAAT 58.851 39.130 6.48 0.00 37.16 1.82
2141 4569 4.586841 TGCCATAGCCCGCTATTTAAAATT 59.413 37.500 6.48 0.00 37.16 1.82
2159 4592 9.451002 TTTAAAATTATGATCTAACCCGTGTGA 57.549 29.630 0.00 0.00 0.00 3.58
2160 4593 9.621629 TTAAAATTATGATCTAACCCGTGTGAT 57.378 29.630 0.00 0.00 0.00 3.06
2183 4619 3.069443 GGGATTTCCTTTTGCAGTGTGAA 59.931 43.478 0.00 0.00 35.95 3.18
2344 4783 2.287909 CCTCTCCTATCGCTGCAGTTAC 60.288 54.545 16.64 0.00 0.00 2.50
2347 4786 1.136305 TCCTATCGCTGCAGTTACCAC 59.864 52.381 16.64 0.00 0.00 4.16
2348 4787 1.134818 CCTATCGCTGCAGTTACCACA 60.135 52.381 16.64 0.00 0.00 4.17
2349 4788 1.927174 CTATCGCTGCAGTTACCACAC 59.073 52.381 16.64 0.00 0.00 3.82
2350 4789 0.321671 ATCGCTGCAGTTACCACACT 59.678 50.000 16.64 0.00 0.00 3.55
2351 4790 0.105964 TCGCTGCAGTTACCACACTT 59.894 50.000 16.64 0.00 0.00 3.16
2352 4791 0.235665 CGCTGCAGTTACCACACTTG 59.764 55.000 16.64 0.00 0.00 3.16
2354 4793 1.676006 GCTGCAGTTACCACACTTGTT 59.324 47.619 16.64 0.00 0.00 2.83
2355 4794 2.287009 GCTGCAGTTACCACACTTGTTC 60.287 50.000 16.64 0.00 0.00 3.18
2356 4795 1.937223 TGCAGTTACCACACTTGTTCG 59.063 47.619 0.00 0.00 0.00 3.95
2357 4796 1.333791 GCAGTTACCACACTTGTTCGC 60.334 52.381 0.00 0.00 0.00 4.70
2358 4797 1.263217 CAGTTACCACACTTGTTCGCC 59.737 52.381 0.00 0.00 0.00 5.54
2359 4798 1.140252 AGTTACCACACTTGTTCGCCT 59.860 47.619 0.00 0.00 0.00 5.52
2360 4799 1.263217 GTTACCACACTTGTTCGCCTG 59.737 52.381 0.00 0.00 0.00 4.85
2361 4800 0.753867 TACCACACTTGTTCGCCTGA 59.246 50.000 0.00 0.00 0.00 3.86
2362 4801 0.108585 ACCACACTTGTTCGCCTGAT 59.891 50.000 0.00 0.00 0.00 2.90
2364 4803 1.609061 CCACACTTGTTCGCCTGATCT 60.609 52.381 0.00 0.00 0.00 2.75
2365 4804 2.146342 CACACTTGTTCGCCTGATCTT 58.854 47.619 0.00 0.00 0.00 2.40
2366 4805 2.096069 CACACTTGTTCGCCTGATCTTG 60.096 50.000 0.00 0.00 0.00 3.02
2368 4807 0.449388 CTTGTTCGCCTGATCTTGGC 59.551 55.000 16.82 16.82 46.42 4.52
2427 4898 2.315386 GGTTTGACGTCGACTGGGC 61.315 63.158 14.70 1.08 0.00 5.36
2471 4945 4.870123 TGGGTTGTCTACGCTAACTAAA 57.130 40.909 3.40 0.00 40.20 1.85
2476 4953 6.982724 GGGTTGTCTACGCTAACTAAATATGT 59.017 38.462 0.00 0.00 36.79 2.29
2529 5006 4.706842 AACTAAGGTGAAGGTGATGTGT 57.293 40.909 0.00 0.00 0.00 3.72
2571 5048 9.588096 TGCTAGTATGAGATTATTTCCTCAGTA 57.412 33.333 0.00 0.00 42.00 2.74
2601 5078 6.570672 ACCGATAGTATAACGACATGACAT 57.429 37.500 0.00 0.00 39.36 3.06
2784 5269 8.840833 TTTTTATTCCCCTTTAAGAAACATGC 57.159 30.769 0.00 0.00 0.00 4.06
2807 5292 6.210584 TGCAAGAGTTTTCCCCCTAAATAAAG 59.789 38.462 0.00 0.00 0.00 1.85
2814 5299 7.670140 AGTTTTCCCCCTAAATAAAGAGAAGTG 59.330 37.037 0.00 0.00 0.00 3.16
2815 5300 6.963117 TTCCCCCTAAATAAAGAGAAGTGA 57.037 37.500 0.00 0.00 0.00 3.41
2833 5321 9.495754 GAGAAGTGATAACATAATTTGAACAGC 57.504 33.333 0.00 0.00 0.00 4.40
2871 5400 5.640357 GGTACCATCAAAGATGTTCACGTTA 59.360 40.000 7.15 0.00 0.00 3.18
2879 5408 6.092944 TCAAAGATGTTCACGTTAACTTGTGT 59.907 34.615 13.37 0.00 37.38 3.72
2994 5524 7.657354 AGCAAACTAGTGAAAATTGGGAAATTC 59.343 33.333 0.00 0.00 0.00 2.17
2996 5526 9.492973 CAAACTAGTGAAAATTGGGAAATTCAT 57.507 29.630 0.00 0.00 34.62 2.57
3052 5582 5.615289 AGGATATTTTGTCTCCATCCGAAG 58.385 41.667 0.00 0.00 40.13 3.79
3059 5589 5.477607 TTGTCTCCATCCGAAGAGTAAAA 57.522 39.130 0.00 0.00 0.00 1.52
3067 5597 3.757270 TCCGAAGAGTAAAAATGGCCAA 58.243 40.909 10.96 0.00 0.00 4.52
3136 5666 1.423541 TGTTGTGGACAATACAGGCCT 59.576 47.619 0.00 0.00 38.24 5.19
3200 5878 5.508657 GGCCTACCTATTACTTTGAGTACCG 60.509 48.000 0.00 0.00 28.93 4.02
3235 5913 7.600065 ACTATTACTTTGAGCACGAGAAGTTA 58.400 34.615 0.00 0.00 34.46 2.24
3242 5920 6.371809 TTGAGCACGAGAAGTTACAAAAAT 57.628 33.333 0.00 0.00 0.00 1.82
3258 5936 6.370433 ACAAAAATTGCACGCCTTAAATTT 57.630 29.167 0.00 0.00 34.54 1.82
3296 5978 4.231439 CACGCCTTAAAATGGGTGTAAAC 58.769 43.478 6.91 0.00 43.43 2.01
3327 6009 7.337942 ACAGGGAGTTTATAAGCTCAAATTCAG 59.662 37.037 25.06 12.68 37.92 3.02
3336 6018 3.225104 AGCTCAAATTCAGCCTTGTGAA 58.775 40.909 5.86 0.00 40.68 3.18
3344 6026 8.149647 TCAAATTCAGCCTTGTGAACAATAAAT 58.850 29.630 0.00 0.00 39.25 1.40
3352 6034 8.829612 AGCCTTGTGAACAATAAATTCAAAAAG 58.170 29.630 0.00 0.00 37.80 2.27
3404 6088 6.494893 TGAACATTCTACATACCTGCAAAC 57.505 37.500 0.00 0.00 0.00 2.93
3504 6198 6.756542 GCTGATTTTGTTGTGTTTTTCCTAGT 59.243 34.615 0.00 0.00 0.00 2.57
3543 6237 2.470628 TCATCACAAAAATTTGCGCACG 59.529 40.909 11.12 0.00 41.79 5.34
3546 6240 1.203812 CAAAAATTTGCGCACGGGC 59.796 52.632 11.12 0.00 0.00 6.13
3659 6353 7.568199 AGGACATTGTTAGTATAATTGTGCC 57.432 36.000 0.00 0.00 0.00 5.01
3677 6371 5.009631 TGTGCCTTATTAGTTGAAGCACAT 58.990 37.500 10.57 0.00 36.10 3.21
3724 6418 1.267806 CATTTTGTGCTCGCAGAAGGT 59.732 47.619 1.75 0.00 34.09 3.50
3805 6502 2.659016 CTCGCCTTCCTGCACTCA 59.341 61.111 0.00 0.00 0.00 3.41
3866 6563 1.319541 CATCCTCCTCGACACGGTAT 58.680 55.000 0.00 0.00 0.00 2.73
3870 6567 1.712018 CTCCTCGACACGGTATGCGA 61.712 60.000 0.00 0.00 36.11 5.10
3901 6601 4.394300 CCATTGCAACAAACCAAGAAACAA 59.606 37.500 0.00 0.00 0.00 2.83
3919 6642 3.827784 CGAAGTTCCACGCGCGAG 61.828 66.667 39.36 29.72 0.00 5.03
4385 8908 0.468214 TGGAGGAGATCGAGCGGATT 60.468 55.000 0.00 0.00 34.82 3.01
4391 8914 3.214250 GATCGAGCGGATTCGGCCT 62.214 63.158 12.10 1.02 40.83 5.19
4431 8954 1.000993 GAGGAGGACAGGGAGAGCA 59.999 63.158 0.00 0.00 0.00 4.26
4437 8960 2.926779 ACAGGGAGAGCAGCAGCA 60.927 61.111 3.17 0.00 45.49 4.41
4490 9028 4.994471 CACCAGCAGCAGTCGCCA 62.994 66.667 0.00 0.00 39.83 5.69
4555 9093 3.069729 TCTCCTCGAGTGAGATGACGATA 59.930 47.826 22.21 5.50 45.57 2.92
4560 9098 1.271102 GAGTGAGATGACGATAGCCCC 59.729 57.143 0.00 0.00 42.67 5.80
4564 9102 0.110678 AGATGACGATAGCCCCGAGA 59.889 55.000 0.00 0.00 42.67 4.04
4565 9103 1.178276 GATGACGATAGCCCCGAGAT 58.822 55.000 0.00 0.00 42.67 2.75
4566 9104 0.891373 ATGACGATAGCCCCGAGATG 59.109 55.000 0.00 0.00 42.67 2.90
4567 9105 0.179001 TGACGATAGCCCCGAGATGA 60.179 55.000 0.00 0.00 42.67 2.92
4576 9114 0.743688 CCCCGAGATGACTGACTGAG 59.256 60.000 0.00 0.00 0.00 3.35
4577 9115 0.102120 CCCGAGATGACTGACTGAGC 59.898 60.000 0.00 0.00 0.00 4.26
4590 9128 1.873591 GACTGAGCGAGATCTCTCTCC 59.126 57.143 30.54 17.17 44.36 3.71
4591 9129 1.238439 CTGAGCGAGATCTCTCTCCC 58.762 60.000 30.54 14.94 44.36 4.30
4592 9130 0.179004 TGAGCGAGATCTCTCTCCCC 60.179 60.000 30.54 14.34 44.36 4.81
4597 9135 1.271108 CGAGATCTCTCTCCCCGATCA 60.271 57.143 20.26 0.00 44.36 2.92
4598 9136 2.436417 GAGATCTCTCTCCCCGATCAG 58.564 57.143 15.80 0.00 41.86 2.90
4599 9137 2.039746 GAGATCTCTCTCCCCGATCAGA 59.960 54.545 15.80 0.00 41.86 3.27
4600 9138 2.649312 AGATCTCTCTCCCCGATCAGAT 59.351 50.000 0.00 0.00 36.80 2.90
4601 9139 2.577606 TCTCTCTCCCCGATCAGATC 57.422 55.000 0.00 0.00 0.00 2.75
4602 9140 1.074727 TCTCTCTCCCCGATCAGATCC 59.925 57.143 4.73 0.00 0.00 3.36
4603 9141 0.113385 TCTCTCCCCGATCAGATCCC 59.887 60.000 4.73 0.00 0.00 3.85
4604 9142 0.114168 CTCTCCCCGATCAGATCCCT 59.886 60.000 4.73 0.00 0.00 4.20
4605 9143 0.563173 TCTCCCCGATCAGATCCCTT 59.437 55.000 4.73 0.00 0.00 3.95
4606 9144 0.972883 CTCCCCGATCAGATCCCTTC 59.027 60.000 4.73 0.00 0.00 3.46
4607 9145 0.471971 TCCCCGATCAGATCCCTTCC 60.472 60.000 4.73 0.00 0.00 3.46
4608 9146 0.472734 CCCCGATCAGATCCCTTCCT 60.473 60.000 4.73 0.00 0.00 3.36
4609 9147 1.428869 CCCGATCAGATCCCTTCCTT 58.571 55.000 4.73 0.00 0.00 3.36
4610 9148 1.771255 CCCGATCAGATCCCTTCCTTT 59.229 52.381 4.73 0.00 0.00 3.11
4611 9149 2.224402 CCCGATCAGATCCCTTCCTTTC 60.224 54.545 4.73 0.00 0.00 2.62
4612 9150 2.435805 CCGATCAGATCCCTTCCTTTCA 59.564 50.000 4.73 0.00 0.00 2.69
4613 9151 3.118261 CCGATCAGATCCCTTCCTTTCAA 60.118 47.826 4.73 0.00 0.00 2.69
4614 9152 4.125703 CGATCAGATCCCTTCCTTTCAAG 58.874 47.826 4.73 0.00 0.00 3.02
4615 9153 4.141846 CGATCAGATCCCTTCCTTTCAAGA 60.142 45.833 4.73 0.00 0.00 3.02
4616 9154 5.454471 CGATCAGATCCCTTCCTTTCAAGAT 60.454 44.000 4.73 0.00 0.00 2.40
4617 9155 5.365021 TCAGATCCCTTCCTTTCAAGATC 57.635 43.478 0.00 0.00 0.00 2.75
4618 9156 5.035556 TCAGATCCCTTCCTTTCAAGATCT 58.964 41.667 0.00 0.00 40.74 2.75
4619 9157 5.130145 TCAGATCCCTTCCTTTCAAGATCTC 59.870 44.000 0.00 0.00 38.66 2.75
4620 9158 5.130809 CAGATCCCTTCCTTTCAAGATCTCT 59.869 44.000 0.00 0.00 38.66 3.10
4621 9159 5.366477 AGATCCCTTCCTTTCAAGATCTCTC 59.634 44.000 0.00 0.00 36.60 3.20
4622 9160 4.693420 TCCCTTCCTTTCAAGATCTCTCT 58.307 43.478 0.00 0.00 0.00 3.10
4623 9161 4.714308 TCCCTTCCTTTCAAGATCTCTCTC 59.286 45.833 0.00 0.00 0.00 3.20
4624 9162 4.141733 CCCTTCCTTTCAAGATCTCTCTCC 60.142 50.000 0.00 0.00 0.00 3.71
4625 9163 4.716287 CCTTCCTTTCAAGATCTCTCTCCT 59.284 45.833 0.00 0.00 0.00 3.69
4626 9164 5.189539 CCTTCCTTTCAAGATCTCTCTCCTT 59.810 44.000 0.00 0.00 0.00 3.36
4627 9165 6.296374 CCTTCCTTTCAAGATCTCTCTCCTTT 60.296 42.308 0.00 0.00 0.00 3.11
4628 9166 7.093112 CCTTCCTTTCAAGATCTCTCTCCTTTA 60.093 40.741 0.00 0.00 0.00 1.85
4629 9167 7.416964 TCCTTTCAAGATCTCTCTCCTTTAG 57.583 40.000 0.00 0.00 0.00 1.85
4630 9168 6.048509 CCTTTCAAGATCTCTCTCCTTTAGC 58.951 44.000 0.00 0.00 0.00 3.09
4639 9177 2.099263 TCTCTCCTTTAGCGTGATTCGG 59.901 50.000 0.00 0.00 40.26 4.30
4640 9178 0.931005 CTCCTTTAGCGTGATTCGGC 59.069 55.000 0.00 0.00 40.26 5.54
4743 9281 0.607489 CAAAGTGAGGCAGGTCTGGG 60.607 60.000 0.00 0.00 0.00 4.45
4749 9317 0.620556 GAGGCAGGTCTGGGAAATGA 59.379 55.000 0.00 0.00 0.00 2.57
4761 9329 1.773653 GGGAAATGATGGAGAGAGCCT 59.226 52.381 0.00 0.00 0.00 4.58
4813 9382 9.458727 ACATGTCTATCTCATTTCATCAAGTTT 57.541 29.630 0.00 0.00 0.00 2.66
4814 9383 9.717892 CATGTCTATCTCATTTCATCAAGTTTG 57.282 33.333 0.00 0.00 0.00 2.93
4815 9384 7.755591 TGTCTATCTCATTTCATCAAGTTTGC 58.244 34.615 0.00 0.00 0.00 3.68
4816 9385 7.148188 TGTCTATCTCATTTCATCAAGTTTGCC 60.148 37.037 0.00 0.00 0.00 4.52
4817 9386 7.066766 GTCTATCTCATTTCATCAAGTTTGCCT 59.933 37.037 0.00 0.00 0.00 4.75
4818 9387 8.267183 TCTATCTCATTTCATCAAGTTTGCCTA 58.733 33.333 0.00 0.00 0.00 3.93
4819 9388 7.707624 ATCTCATTTCATCAAGTTTGCCTAA 57.292 32.000 0.00 0.00 0.00 2.69
4820 9389 7.523293 TCTCATTTCATCAAGTTTGCCTAAA 57.477 32.000 0.00 0.00 0.00 1.85
4821 9390 7.950512 TCTCATTTCATCAAGTTTGCCTAAAA 58.049 30.769 0.00 0.00 0.00 1.52
4822 9391 8.420222 TCTCATTTCATCAAGTTTGCCTAAAAA 58.580 29.630 0.00 0.00 0.00 1.94
4844 9413 7.920160 AAAAACAAACACATTTCATCCAGTT 57.080 28.000 0.00 0.00 0.00 3.16
4878 9447 4.188247 TGCGTCTACTAATTGCTCTTGT 57.812 40.909 0.00 0.00 0.00 3.16
4950 9519 4.414852 CAAAACTAATTGATGCACCCTCG 58.585 43.478 0.00 0.00 31.84 4.63
5087 9671 0.905357 ATGGAGGTCCTGAACGGAAG 59.095 55.000 0.00 0.00 45.32 3.46
5107 9694 2.981784 AGCATGGATGTATTAGCTCCCA 59.018 45.455 0.00 0.00 0.00 4.37
5176 9763 4.443315 GCAGGATTTGGGAATGTTTATGGG 60.443 45.833 0.00 0.00 0.00 4.00
5185 9773 3.565902 GGAATGTTTATGGGAGCTAGTGC 59.434 47.826 0.00 0.00 40.05 4.40
5246 12347 0.798771 GCGCTGTCTGTAGTTCTCGG 60.799 60.000 0.00 0.00 0.00 4.63
5257 12358 0.035247 AGTTCTCGGTAGGTCGCTCT 60.035 55.000 0.00 0.00 0.00 4.09
5281 12382 0.396435 TCCACACCGCAGAGAAATGT 59.604 50.000 0.00 0.00 0.00 2.71
5287 12388 1.270968 CGCAGAGAAATGTAGCGCG 59.729 57.895 0.00 0.00 41.95 6.86
5288 12389 1.139816 CGCAGAGAAATGTAGCGCGA 61.140 55.000 12.10 0.00 43.64 5.87
5321 12430 4.406972 TGATGGGAATCAAGTTCGATCTCT 59.593 41.667 0.00 0.00 37.73 3.10
5354 12463 1.066430 AGCCGGTAACCATGTACTGTG 60.066 52.381 1.90 0.00 0.00 3.66
5355 12464 1.066716 GCCGGTAACCATGTACTGTGA 60.067 52.381 1.90 0.00 0.00 3.58
5360 12469 4.575885 GGTAACCATGTACTGTGACACAT 58.424 43.478 9.11 2.46 35.79 3.21
5446 12555 2.240667 CCACCTCTGAACATTCCCATCT 59.759 50.000 0.00 0.00 0.00 2.90
5467 12580 0.319125 TACACGCGAATGTGCAGTCA 60.319 50.000 15.93 0.00 43.74 3.41
5477 12590 3.222053 GTGCAGTCACATGCTCTGA 57.778 52.632 13.93 0.00 46.63 3.27
5511 12624 1.308069 CCCATGCAACTTGGTCTCGG 61.308 60.000 4.19 0.00 31.99 4.63
5517 12630 2.448582 AACTTGGTCTCGGGTGCCA 61.449 57.895 0.00 0.00 0.00 4.92
5520 12633 4.954118 TGGTCTCGGGTGCCACCT 62.954 66.667 14.71 0.00 38.64 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.449107 ACTACTCGCTCTGTTCACTTTTA 57.551 39.130 0.00 0.00 0.00 1.52
2 3 4.323553 ACTACTCGCTCTGTTCACTTTT 57.676 40.909 0.00 0.00 0.00 2.27
3 4 4.760715 TCTACTACTCGCTCTGTTCACTTT 59.239 41.667 0.00 0.00 0.00 2.66
4 5 4.325119 TCTACTACTCGCTCTGTTCACTT 58.675 43.478 0.00 0.00 0.00 3.16
5 6 3.940319 TCTACTACTCGCTCTGTTCACT 58.060 45.455 0.00 0.00 0.00 3.41
6 7 4.886247 ATCTACTACTCGCTCTGTTCAC 57.114 45.455 0.00 0.00 0.00 3.18
7 8 4.438880 GCAATCTACTACTCGCTCTGTTCA 60.439 45.833 0.00 0.00 0.00 3.18
8 9 4.039032 GCAATCTACTACTCGCTCTGTTC 58.961 47.826 0.00 0.00 0.00 3.18
9 10 3.487711 CGCAATCTACTACTCGCTCTGTT 60.488 47.826 0.00 0.00 0.00 3.16
10 11 2.032302 CGCAATCTACTACTCGCTCTGT 59.968 50.000 0.00 0.00 0.00 3.41
11 12 2.288186 TCGCAATCTACTACTCGCTCTG 59.712 50.000 0.00 0.00 0.00 3.35
12 13 2.562635 TCGCAATCTACTACTCGCTCT 58.437 47.619 0.00 0.00 0.00 4.09
13 14 3.187637 AGATCGCAATCTACTACTCGCTC 59.812 47.826 0.00 0.00 40.57 5.03
14 15 3.142951 AGATCGCAATCTACTACTCGCT 58.857 45.455 0.00 0.00 40.57 4.93
15 16 3.484683 GAGATCGCAATCTACTACTCGC 58.515 50.000 0.00 0.00 42.46 5.03
16 17 4.073169 GGAGATCGCAATCTACTACTCG 57.927 50.000 0.00 0.00 42.46 4.18
26 27 3.118112 AGAACCATCAAGGAGATCGCAAT 60.118 43.478 0.00 0.00 41.22 3.56
28 29 1.833630 AGAACCATCAAGGAGATCGCA 59.166 47.619 0.00 0.00 41.22 5.10
90 92 0.244450 CGGTTCTACCCGTGCTTGTA 59.756 55.000 0.00 0.00 43.07 2.41
91 93 1.005394 CGGTTCTACCCGTGCTTGT 60.005 57.895 0.00 0.00 43.07 3.16
108 110 1.673760 CGACCTGCACATGTTTTTCG 58.326 50.000 0.00 0.00 0.00 3.46
129 143 2.050714 TCTGTCGTGGACGCGAAC 60.051 61.111 15.93 7.23 42.82 3.95
139 153 1.356979 CGATGCGATCCTCTGTCGT 59.643 57.895 0.00 0.00 40.98 4.34
159 173 3.286694 ATGCCACATGGAAGCCGGT 62.287 57.895 1.90 0.00 37.39 5.28
209 223 1.521681 GGCCAGCGTACTCCATGTC 60.522 63.158 0.00 0.00 0.00 3.06
245 259 3.802866 CAAAGGTAAAGGCAAAGGCAAA 58.197 40.909 0.00 0.00 43.71 3.68
246 260 2.484594 GCAAAGGTAAAGGCAAAGGCAA 60.485 45.455 0.00 0.00 43.71 4.52
247 261 1.069978 GCAAAGGTAAAGGCAAAGGCA 59.930 47.619 0.00 0.00 43.71 4.75
376 394 0.611062 ATCGACCCGGAGTGAAGACA 60.611 55.000 0.73 0.00 0.00 3.41
448 466 2.753043 GGAGGCAGGACGGACGTA 60.753 66.667 0.00 0.00 0.00 3.57
503 521 2.372172 GGAGGAGGAAAGTGACCTTTGA 59.628 50.000 0.00 0.00 40.98 2.69
505 523 1.705745 GGGAGGAGGAAAGTGACCTTT 59.294 52.381 0.00 0.00 43.58 3.11
509 527 1.003696 CAAGGGGAGGAGGAAAGTGAC 59.996 57.143 0.00 0.00 0.00 3.67
543 568 2.049985 GTGTCTGCTCGACGTGCT 60.050 61.111 21.05 0.00 45.87 4.40
573 601 0.034863 TTAACCATCAAGGACCGGCC 60.035 55.000 0.00 3.58 41.22 6.13
574 602 1.092348 GTTAACCATCAAGGACCGGC 58.908 55.000 0.00 0.00 41.22 6.13
575 603 1.365699 CGTTAACCATCAAGGACCGG 58.634 55.000 0.00 0.00 41.22 5.28
589 617 2.904905 CCGGATGCTCCCCGTTAA 59.095 61.111 0.00 0.00 45.14 2.01
645 673 3.202001 GGCCAGATAAAGCGCGCA 61.202 61.111 35.10 13.97 0.00 6.09
681 709 7.413644 CGTGTCAGATATCAGCTAGTATATGG 58.586 42.308 5.32 1.25 0.00 2.74
689 717 1.266989 CCGCGTGTCAGATATCAGCTA 59.733 52.381 4.92 0.00 0.00 3.32
690 718 0.031314 CCGCGTGTCAGATATCAGCT 59.969 55.000 4.92 0.00 0.00 4.24
691 719 1.552348 GCCGCGTGTCAGATATCAGC 61.552 60.000 4.92 0.00 0.00 4.26
693 721 0.174617 TTGCCGCGTGTCAGATATCA 59.825 50.000 4.92 0.00 0.00 2.15
694 722 0.855349 CTTGCCGCGTGTCAGATATC 59.145 55.000 4.92 0.00 0.00 1.63
707 737 0.794229 CTGCAAACATACGCTTGCCG 60.794 55.000 4.48 0.00 45.92 5.69
712 742 0.238289 GTGCACTGCAAACATACGCT 59.762 50.000 10.32 0.00 41.47 5.07
721 757 1.808531 GCCCAAGATGTGCACTGCAA 61.809 55.000 19.41 0.00 41.47 4.08
793 844 2.737679 GCTTACGCGTTATGGAAGACCT 60.738 50.000 20.78 0.00 37.04 3.85
974 1044 1.725706 CTCAACTGCAGAAAGCTCGAG 59.274 52.381 23.35 8.45 45.94 4.04
1051 1130 4.314440 GTGCTCGTGGCCTGGTGA 62.314 66.667 3.32 0.00 40.92 4.02
1092 1180 2.024414 GCACTGGGAAGAAGTTTGTGT 58.976 47.619 0.00 0.00 0.00 3.72
1093 1181 1.338020 GGCACTGGGAAGAAGTTTGTG 59.662 52.381 0.00 0.00 0.00 3.33
1094 1182 1.064017 TGGCACTGGGAAGAAGTTTGT 60.064 47.619 0.00 0.00 0.00 2.83
1096 1184 2.683211 ATGGCACTGGGAAGAAGTTT 57.317 45.000 0.00 0.00 0.00 2.66
1104 1898 1.186917 CCTGCAAAATGGCACTGGGA 61.187 55.000 0.00 0.00 39.25 4.37
1123 1917 0.313672 TCCATGCCAAAGACAAACGC 59.686 50.000 0.00 0.00 0.00 4.84
1130 1924 2.302445 CCAATGGTTTCCATGCCAAAGA 59.698 45.455 1.86 0.00 44.40 2.52
1133 1927 0.324285 GCCAATGGTTTCCATGCCAA 59.676 50.000 0.00 0.00 44.40 4.52
1134 1928 0.544833 AGCCAATGGTTTCCATGCCA 60.545 50.000 0.00 0.00 44.40 4.92
1135 1929 0.614812 AAGCCAATGGTTTCCATGCC 59.385 50.000 0.00 0.00 44.40 4.40
1148 1942 2.859165 ATCTGAAGGTCGAAAGCCAA 57.141 45.000 0.00 0.00 0.00 4.52
1149 1943 2.813754 CAAATCTGAAGGTCGAAAGCCA 59.186 45.455 0.00 0.00 0.00 4.75
1150 1944 2.414691 GCAAATCTGAAGGTCGAAAGCC 60.415 50.000 0.00 0.00 0.00 4.35
1151 1945 2.485814 AGCAAATCTGAAGGTCGAAAGC 59.514 45.455 0.00 0.00 0.00 3.51
1152 1946 4.756084 AAGCAAATCTGAAGGTCGAAAG 57.244 40.909 0.00 0.00 0.00 2.62
1153 1947 4.792704 GCAAAGCAAATCTGAAGGTCGAAA 60.793 41.667 0.00 0.00 0.00 3.46
1155 1949 2.226437 GCAAAGCAAATCTGAAGGTCGA 59.774 45.455 0.00 0.00 0.00 4.20
1156 1950 2.589014 GCAAAGCAAATCTGAAGGTCG 58.411 47.619 0.00 0.00 0.00 4.79
1157 1951 2.353109 GGGCAAAGCAAATCTGAAGGTC 60.353 50.000 0.00 0.00 0.00 3.85
1158 1952 1.620323 GGGCAAAGCAAATCTGAAGGT 59.380 47.619 0.00 0.00 0.00 3.50
1159 1953 1.619827 TGGGCAAAGCAAATCTGAAGG 59.380 47.619 0.00 0.00 0.00 3.46
1177 1971 1.226660 GCCACGCGGAATTGAATGG 60.227 57.895 12.47 7.49 0.00 3.16
1430 2227 2.717809 GCTCCGCGAACGTGAAGAC 61.718 63.158 8.23 0.00 37.70 3.01
1618 3963 2.112815 GGTGCGTACCTGCCATTCC 61.113 63.158 16.23 0.00 43.97 3.01
1810 4203 1.588667 CGCAATTATTGGTGCCGGC 60.589 57.895 22.73 22.73 37.47 6.13
1839 4232 1.402984 CGTGTGGAACTGGCTCTAGTC 60.403 57.143 0.00 0.00 38.04 2.59
1840 4233 0.603569 CGTGTGGAACTGGCTCTAGT 59.396 55.000 0.00 0.00 38.04 2.57
1984 4385 1.215647 GCAGCGTGGTACTACAGCT 59.784 57.895 17.98 17.98 38.90 4.24
1985 4386 1.078759 CAGCAGCGTGGTACTACAGC 61.079 60.000 10.21 12.93 0.00 4.40
1986 4387 0.243907 ACAGCAGCGTGGTACTACAG 59.756 55.000 10.21 3.80 0.00 2.74
1987 4388 0.038618 CACAGCAGCGTGGTACTACA 60.039 55.000 10.21 0.00 33.05 2.74
1988 4389 1.352156 GCACAGCAGCGTGGTACTAC 61.352 60.000 15.96 0.00 37.37 2.73
1989 4390 1.080093 GCACAGCAGCGTGGTACTA 60.080 57.895 15.96 0.00 37.37 1.82
1990 4391 2.357517 GCACAGCAGCGTGGTACT 60.358 61.111 15.96 0.00 37.37 2.73
1991 4392 2.664851 TGCACAGCAGCGTGGTAC 60.665 61.111 15.96 0.00 37.37 3.34
2000 4401 3.218470 GCACCAACCTGCACAGCA 61.218 61.111 0.00 0.00 37.11 4.41
2001 4402 3.982241 GGCACCAACCTGCACAGC 61.982 66.667 0.00 0.00 39.08 4.40
2002 4403 3.663176 CGGCACCAACCTGCACAG 61.663 66.667 0.00 0.00 39.08 3.66
2003 4404 4.497984 ACGGCACCAACCTGCACA 62.498 61.111 0.00 0.00 39.08 4.57
2004 4405 3.660111 GACGGCACCAACCTGCAC 61.660 66.667 0.00 0.00 39.08 4.57
2005 4406 4.947147 GGACGGCACCAACCTGCA 62.947 66.667 0.00 0.00 39.08 4.41
2006 4407 4.643387 AGGACGGCACCAACCTGC 62.643 66.667 0.00 0.00 36.33 4.85
2031 4432 1.661341 CGAGAAATGGGAAGCAGGAG 58.339 55.000 0.00 0.00 0.00 3.69
2052 4453 1.818060 CCCACATTTCTGCGGATTTCA 59.182 47.619 0.00 0.00 0.00 2.69
2057 4458 2.745884 CGCCCACATTTCTGCGGA 60.746 61.111 0.00 0.00 43.08 5.54
2071 4472 0.026803 GACAAACGATGATCTGCGCC 59.973 55.000 4.18 0.00 0.00 6.53
2083 4484 2.126228 TCGGCCTAGCGACAAACG 60.126 61.111 0.00 0.00 45.66 3.60
2115 4543 1.318576 AATAGCGGGCTATGGCAAAC 58.681 50.000 13.53 0.00 39.03 2.93
2120 4548 8.050778 TCATAATTTTAAATAGCGGGCTATGG 57.949 34.615 13.53 0.00 39.03 2.74
2125 4553 9.556030 GTTAGATCATAATTTTAAATAGCGGGC 57.444 33.333 0.00 0.00 0.00 6.13
2133 4561 9.451002 TCACACGGGTTAGATCATAATTTTAAA 57.549 29.630 0.00 0.00 0.00 1.52
2134 4562 9.621629 ATCACACGGGTTAGATCATAATTTTAA 57.378 29.630 0.00 0.00 0.00 1.52
2137 4565 6.486657 CCATCACACGGGTTAGATCATAATTT 59.513 38.462 0.00 0.00 0.00 1.82
2138 4566 5.997746 CCATCACACGGGTTAGATCATAATT 59.002 40.000 0.00 0.00 0.00 1.40
2139 4567 5.513094 CCCATCACACGGGTTAGATCATAAT 60.513 44.000 0.00 0.00 39.05 1.28
2140 4568 4.202315 CCCATCACACGGGTTAGATCATAA 60.202 45.833 0.00 0.00 39.05 1.90
2141 4569 3.323691 CCCATCACACGGGTTAGATCATA 59.676 47.826 0.00 0.00 39.05 2.15
2157 4590 3.258872 CACTGCAAAAGGAAATCCCATCA 59.741 43.478 0.00 0.00 37.41 3.07
2158 4591 3.259123 ACACTGCAAAAGGAAATCCCATC 59.741 43.478 0.00 0.00 37.41 3.51
2159 4592 3.007182 CACACTGCAAAAGGAAATCCCAT 59.993 43.478 0.00 0.00 37.41 4.00
2160 4593 2.364970 CACACTGCAAAAGGAAATCCCA 59.635 45.455 0.00 0.00 37.41 4.37
2168 4601 3.129287 AGTTCACTTCACACTGCAAAAGG 59.871 43.478 0.00 0.00 0.00 3.11
2169 4602 4.361451 AGTTCACTTCACACTGCAAAAG 57.639 40.909 0.00 0.00 0.00 2.27
2183 4619 2.118403 TCCTCCCCAGAAAGTTCACT 57.882 50.000 0.00 0.00 0.00 3.41
2344 4783 0.798776 GATCAGGCGAACAAGTGTGG 59.201 55.000 0.00 0.00 0.00 4.17
2347 4786 1.466167 CCAAGATCAGGCGAACAAGTG 59.534 52.381 0.00 0.00 0.00 3.16
2348 4787 1.813513 CCAAGATCAGGCGAACAAGT 58.186 50.000 0.00 0.00 0.00 3.16
2349 4788 0.449388 GCCAAGATCAGGCGAACAAG 59.551 55.000 12.66 0.00 43.15 3.16
2350 4789 2.555123 GCCAAGATCAGGCGAACAA 58.445 52.632 12.66 0.00 43.15 2.83
2351 4790 4.301505 GCCAAGATCAGGCGAACA 57.698 55.556 12.66 0.00 43.15 3.18
2357 4796 7.270047 ACATGAAAAATAATGCCAAGATCAGG 58.730 34.615 0.00 0.00 0.00 3.86
2358 4797 7.437267 GGACATGAAAAATAATGCCAAGATCAG 59.563 37.037 0.00 0.00 0.00 2.90
2359 4798 7.267128 GGACATGAAAAATAATGCCAAGATCA 58.733 34.615 0.00 0.00 0.00 2.92
2360 4799 6.418819 CGGACATGAAAAATAATGCCAAGATC 59.581 38.462 0.00 0.00 0.00 2.75
2361 4800 6.127366 ACGGACATGAAAAATAATGCCAAGAT 60.127 34.615 0.00 0.00 0.00 2.40
2362 4801 5.184864 ACGGACATGAAAAATAATGCCAAGA 59.815 36.000 0.00 0.00 0.00 3.02
2364 4803 5.398603 ACGGACATGAAAAATAATGCCAA 57.601 34.783 0.00 0.00 0.00 4.52
2365 4804 5.398603 AACGGACATGAAAAATAATGCCA 57.601 34.783 0.00 0.00 0.00 4.92
2366 4805 6.099341 AGAAACGGACATGAAAAATAATGCC 58.901 36.000 0.00 0.00 0.00 4.40
2368 4807 8.023128 ACAGAGAAACGGACATGAAAAATAATG 58.977 33.333 0.00 0.00 0.00 1.90
2369 4808 8.110860 ACAGAGAAACGGACATGAAAAATAAT 57.889 30.769 0.00 0.00 0.00 1.28
2371 4810 8.500773 GTTACAGAGAAACGGACATGAAAAATA 58.499 33.333 0.00 0.00 0.00 1.40
2372 4811 7.228706 AGTTACAGAGAAACGGACATGAAAAAT 59.771 33.333 0.00 0.00 32.00 1.82
2416 4887 3.343788 GAGGTCAGCCCAGTCGACG 62.344 68.421 10.46 5.16 34.66 5.12
2427 4898 3.192422 AGATCGTTGTCAGAAGAGGTCAG 59.808 47.826 0.00 0.00 0.00 3.51
2471 4945 4.464244 CGAGTAGACCATCCCATCACATAT 59.536 45.833 0.00 0.00 0.00 1.78
2476 4953 1.040646 GCGAGTAGACCATCCCATCA 58.959 55.000 0.00 0.00 0.00 3.07
2529 5006 4.460263 ACTAGCACTTTGGTGATGACAAA 58.540 39.130 0.00 0.00 45.61 2.83
2539 5016 8.778358 GGAAATAATCTCATACTAGCACTTTGG 58.222 37.037 0.00 0.00 0.00 3.28
2571 5048 3.633525 TCGTTATACTATCGGTTGGCACT 59.366 43.478 0.00 0.00 0.00 4.40
2601 5078 0.331278 CATGCCCAGGTCCCAGTTTA 59.669 55.000 0.00 0.00 0.00 2.01
2763 5246 6.951198 TCTTGCATGTTTCTTAAAGGGGAATA 59.049 34.615 0.00 0.00 0.00 1.75
2767 5250 4.524328 ACTCTTGCATGTTTCTTAAAGGGG 59.476 41.667 0.00 0.00 0.00 4.79
2768 5251 5.712152 ACTCTTGCATGTTTCTTAAAGGG 57.288 39.130 0.00 0.00 0.00 3.95
2784 5269 7.888546 TCTCTTTATTTAGGGGGAAAACTCTTG 59.111 37.037 0.00 0.00 0.00 3.02
2807 5292 9.495754 GCTGTTCAAATTATGTTATCACTTCTC 57.504 33.333 0.00 0.00 0.00 2.87
2833 5321 7.416964 TTGATGGTACCCAAGATTAAATTGG 57.583 36.000 10.07 13.42 45.68 3.16
2871 5400 7.822658 AGTTTGTACACACAATAACACAAGTT 58.177 30.769 14.30 0.00 44.01 2.66
2972 5502 8.869109 TCATGAATTTCCCAATTTTCACTAGTT 58.131 29.630 0.00 0.00 32.35 2.24
2973 5503 8.421249 TCATGAATTTCCCAATTTTCACTAGT 57.579 30.769 0.00 0.00 32.35 2.57
3067 5597 1.541368 TGCCCACCCTTTCTAGGCT 60.541 57.895 0.00 0.00 44.19 4.58
3175 5706 5.364735 GGTACTCAAAGTAATAGGTAGGCCA 59.635 44.000 5.01 0.00 31.62 5.36
3210 5888 6.026947 ACTTCTCGTGCTCAAAGTAATAGT 57.973 37.500 0.00 0.00 30.47 2.12
3228 5906 4.048504 GGCGTGCAATTTTTGTAACTTCT 58.951 39.130 0.00 0.00 0.00 2.85
3235 5913 6.370433 AAATTTAAGGCGTGCAATTTTTGT 57.630 29.167 0.00 0.00 0.00 2.83
3296 5978 2.470821 CTTATAAACTCCCTGTCCGCG 58.529 52.381 0.00 0.00 0.00 6.46
3327 6009 8.611757 ACTTTTTGAATTTATTGTTCACAAGGC 58.388 29.630 0.00 0.00 39.47 4.35
3386 6070 5.815581 TGGAAGTTTGCAGGTATGTAGAAT 58.184 37.500 0.00 0.00 0.00 2.40
3543 6237 5.048013 ACAAGCATTACTTAGTTCTTTGCCC 60.048 40.000 0.00 0.00 36.04 5.36
3546 6240 9.944663 TTACAACAAGCATTACTTAGTTCTTTG 57.055 29.630 0.00 0.00 36.04 2.77
3548 6242 9.116067 TGTTACAACAAGCATTACTTAGTTCTT 57.884 29.630 0.00 0.00 36.04 2.52
3590 6284 9.559732 TGCTAATGCTATGAACAGTAAATACAT 57.440 29.630 0.00 0.00 40.48 2.29
3591 6285 8.956533 TGCTAATGCTATGAACAGTAAATACA 57.043 30.769 0.00 0.00 40.48 2.29
3609 6303 5.058149 AGTCTCGAGCTCATATGCTAATG 57.942 43.478 15.40 0.00 44.17 1.90
3659 6353 9.906660 TTGGTTTAATGTGCTTCAACTAATAAG 57.093 29.630 0.00 0.00 0.00 1.73
3713 6407 2.275318 GAAAGATCCACCTTCTGCGAG 58.725 52.381 0.00 0.00 0.00 5.03
3715 6409 1.373570 GGAAAGATCCACCTTCTGCG 58.626 55.000 0.00 0.00 45.79 5.18
3805 6502 1.107114 AGATGACGTGCTTCTCCGAT 58.893 50.000 0.00 0.00 0.00 4.18
3866 6563 2.125552 CAATGGAGAGGCGTCGCA 60.126 61.111 20.50 0.00 0.00 5.10
3870 6567 0.537143 TTGTTGCAATGGAGAGGCGT 60.537 50.000 0.59 0.00 0.00 5.68
3901 6601 4.634133 TCGCGCGTGGAACTTCGT 62.634 61.111 30.98 0.00 33.96 3.85
3919 6642 4.581409 GGAGAGCGGGATATAGATTAGGTC 59.419 50.000 0.00 0.00 0.00 3.85
4529 9067 1.098712 ATCTCACTCGAGGAGACGGC 61.099 60.000 26.04 0.00 43.65 5.68
4541 9079 1.333177 GGGGCTATCGTCATCTCACT 58.667 55.000 0.00 0.00 0.00 3.41
4555 9093 1.000993 AGTCAGTCATCTCGGGGCT 59.999 57.895 0.00 0.00 0.00 5.19
4560 9098 0.729690 TCGCTCAGTCAGTCATCTCG 59.270 55.000 0.00 0.00 0.00 4.04
4564 9102 2.618241 GAGATCTCGCTCAGTCAGTCAT 59.382 50.000 7.04 0.00 35.01 3.06
4565 9103 2.013400 GAGATCTCGCTCAGTCAGTCA 58.987 52.381 7.04 0.00 35.01 3.41
4566 9104 2.287915 GAGAGATCTCGCTCAGTCAGTC 59.712 54.545 18.17 2.73 41.54 3.51
4567 9105 2.288666 GAGAGATCTCGCTCAGTCAGT 58.711 52.381 18.17 0.00 41.54 3.41
4590 9128 1.428869 AAGGAAGGGATCTGATCGGG 58.571 55.000 11.28 0.00 0.00 5.14
4591 9129 2.435805 TGAAAGGAAGGGATCTGATCGG 59.564 50.000 11.28 0.00 0.00 4.18
4592 9130 3.827008 TGAAAGGAAGGGATCTGATCG 57.173 47.619 11.28 0.00 0.00 3.69
4597 9135 5.287864 AGAGATCTTGAAAGGAAGGGATCT 58.712 41.667 0.00 0.00 41.38 2.75
4598 9136 5.366477 AGAGAGATCTTGAAAGGAAGGGATC 59.634 44.000 0.00 0.00 0.00 3.36
4599 9137 5.287864 AGAGAGATCTTGAAAGGAAGGGAT 58.712 41.667 0.00 0.00 0.00 3.85
4600 9138 4.693420 AGAGAGATCTTGAAAGGAAGGGA 58.307 43.478 0.00 0.00 0.00 4.20
4601 9139 4.141733 GGAGAGAGATCTTGAAAGGAAGGG 60.142 50.000 0.00 0.00 0.00 3.95
4602 9140 4.716287 AGGAGAGAGATCTTGAAAGGAAGG 59.284 45.833 0.00 0.00 0.00 3.46
4603 9141 5.937975 AGGAGAGAGATCTTGAAAGGAAG 57.062 43.478 0.00 0.00 0.00 3.46
4604 9142 6.694445 AAAGGAGAGAGATCTTGAAAGGAA 57.306 37.500 0.00 0.00 0.00 3.36
4605 9143 6.127196 GCTAAAGGAGAGAGATCTTGAAAGGA 60.127 42.308 0.00 0.00 0.00 3.36
4606 9144 6.048509 GCTAAAGGAGAGAGATCTTGAAAGG 58.951 44.000 0.00 0.00 0.00 3.11
4607 9145 5.748152 CGCTAAAGGAGAGAGATCTTGAAAG 59.252 44.000 0.00 0.00 0.00 2.62
4608 9146 5.186021 ACGCTAAAGGAGAGAGATCTTGAAA 59.814 40.000 0.00 0.00 0.00 2.69
4609 9147 4.707448 ACGCTAAAGGAGAGAGATCTTGAA 59.293 41.667 0.00 0.00 0.00 2.69
4610 9148 4.097135 CACGCTAAAGGAGAGAGATCTTGA 59.903 45.833 0.00 0.00 0.00 3.02
4611 9149 4.097135 TCACGCTAAAGGAGAGAGATCTTG 59.903 45.833 0.00 0.00 0.00 3.02
4612 9150 4.274147 TCACGCTAAAGGAGAGAGATCTT 58.726 43.478 0.00 0.00 0.00 2.40
4613 9151 3.892284 TCACGCTAAAGGAGAGAGATCT 58.108 45.455 0.00 0.00 0.00 2.75
4614 9152 4.846779 ATCACGCTAAAGGAGAGAGATC 57.153 45.455 0.00 0.00 31.36 2.75
4615 9153 4.261405 CGAATCACGCTAAAGGAGAGAGAT 60.261 45.833 0.00 0.00 36.98 2.75
4616 9154 3.065510 CGAATCACGCTAAAGGAGAGAGA 59.934 47.826 0.00 0.00 34.51 3.10
4617 9155 3.367607 CGAATCACGCTAAAGGAGAGAG 58.632 50.000 0.00 0.00 34.51 3.20
4618 9156 2.099263 CCGAATCACGCTAAAGGAGAGA 59.901 50.000 0.00 0.00 41.07 3.10
4619 9157 2.464865 CCGAATCACGCTAAAGGAGAG 58.535 52.381 0.00 0.00 41.07 3.20
4620 9158 1.470979 GCCGAATCACGCTAAAGGAGA 60.471 52.381 0.00 0.00 41.07 3.71
4621 9159 0.931005 GCCGAATCACGCTAAAGGAG 59.069 55.000 0.00 0.00 41.07 3.69
4622 9160 0.804544 CGCCGAATCACGCTAAAGGA 60.805 55.000 0.00 0.00 41.07 3.36
4623 9161 1.636340 CGCCGAATCACGCTAAAGG 59.364 57.895 0.00 0.00 41.07 3.11
4651 9189 0.482446 AGACATGGAAAACTGGGCCA 59.518 50.000 5.85 5.85 35.91 5.36
4665 9203 0.622665 CCAGGAGAAGCCCAAGACAT 59.377 55.000 0.00 0.00 37.37 3.06
4711 9249 3.243035 CCTCACTTTGCACATCGTTGAAA 60.243 43.478 0.00 0.00 0.00 2.69
4743 9281 4.953940 ACTAGGCTCTCTCCATCATTTC 57.046 45.455 0.00 0.00 0.00 2.17
4749 9317 3.678965 TCAGAACTAGGCTCTCTCCAT 57.321 47.619 0.00 0.00 0.00 3.41
4820 9389 7.920160 AACTGGATGAAATGTGTTTGTTTTT 57.080 28.000 0.00 0.00 0.00 1.94
4821 9390 8.878769 GTTAACTGGATGAAATGTGTTTGTTTT 58.121 29.630 0.00 0.00 0.00 2.43
4822 9391 8.037758 TGTTAACTGGATGAAATGTGTTTGTTT 58.962 29.630 7.22 0.00 0.00 2.83
4823 9392 7.491048 GTGTTAACTGGATGAAATGTGTTTGTT 59.509 33.333 7.22 0.00 0.00 2.83
4824 9393 6.978080 GTGTTAACTGGATGAAATGTGTTTGT 59.022 34.615 7.22 0.00 0.00 2.83
4825 9394 6.977502 TGTGTTAACTGGATGAAATGTGTTTG 59.022 34.615 7.22 0.00 0.00 2.93
4826 9395 6.978080 GTGTGTTAACTGGATGAAATGTGTTT 59.022 34.615 7.22 0.00 0.00 2.83
4827 9396 6.503524 GTGTGTTAACTGGATGAAATGTGTT 58.496 36.000 7.22 0.00 0.00 3.32
4828 9397 5.277779 CGTGTGTTAACTGGATGAAATGTGT 60.278 40.000 7.22 0.00 0.00 3.72
4829 9398 5.146460 CGTGTGTTAACTGGATGAAATGTG 58.854 41.667 7.22 0.00 0.00 3.21
4830 9399 4.320202 GCGTGTGTTAACTGGATGAAATGT 60.320 41.667 7.22 0.00 0.00 2.71
4831 9400 4.158384 GCGTGTGTTAACTGGATGAAATG 58.842 43.478 7.22 0.00 0.00 2.32
4832 9401 3.818210 TGCGTGTGTTAACTGGATGAAAT 59.182 39.130 7.22 0.00 0.00 2.17
4833 9402 3.002862 GTGCGTGTGTTAACTGGATGAAA 59.997 43.478 7.22 0.00 0.00 2.69
4834 9403 2.546368 GTGCGTGTGTTAACTGGATGAA 59.454 45.455 7.22 0.00 0.00 2.57
4835 9404 2.139917 GTGCGTGTGTTAACTGGATGA 58.860 47.619 7.22 0.00 0.00 2.92
4836 9405 1.870402 TGTGCGTGTGTTAACTGGATG 59.130 47.619 7.22 0.00 0.00 3.51
4837 9406 2.248280 TGTGCGTGTGTTAACTGGAT 57.752 45.000 7.22 0.00 0.00 3.41
4838 9407 1.870402 CATGTGCGTGTGTTAACTGGA 59.130 47.619 7.22 0.00 0.00 3.86
4839 9408 1.662876 GCATGTGCGTGTGTTAACTGG 60.663 52.381 7.22 0.00 0.00 4.00
4840 9409 1.673760 GCATGTGCGTGTGTTAACTG 58.326 50.000 7.22 0.00 0.00 3.16
5066 9650 2.471815 TCCGTTCAGGACCTCCATAT 57.528 50.000 0.00 0.00 45.98 1.78
5068 9652 4.887957 TCCGTTCAGGACCTCCAT 57.112 55.556 0.00 0.00 45.98 3.41
5087 9671 3.341823 CTGGGAGCTAATACATCCATGC 58.658 50.000 0.00 0.00 34.62 4.06
5107 9694 8.662141 GTGCATTCAAATTAAATTCAATCAGCT 58.338 29.630 0.00 0.00 0.00 4.24
5158 9745 4.623863 AGCTCCCATAAACATTCCCAAAT 58.376 39.130 0.00 0.00 0.00 2.32
5176 9763 5.297776 ACATTGTTTGGATATGCACTAGCTC 59.702 40.000 0.00 0.00 42.74 4.09
5246 12347 1.401199 GTGGACTGTAGAGCGACCTAC 59.599 57.143 7.46 7.46 39.46 3.18
5257 12358 0.538746 TCTCTGCGGTGTGGACTGTA 60.539 55.000 0.00 0.00 0.00 2.74
5287 12388 1.026182 TTCCCATCATGCACGCTGTC 61.026 55.000 0.00 0.00 0.00 3.51
5288 12389 0.394762 ATTCCCATCATGCACGCTGT 60.395 50.000 0.00 0.00 0.00 4.40
5340 12449 5.699001 GTCAATGTGTCACAGTACATGGTTA 59.301 40.000 12.03 0.00 37.57 2.85
5341 12450 4.515191 GTCAATGTGTCACAGTACATGGTT 59.485 41.667 12.03 0.00 37.57 3.67
5354 12463 0.887933 AATTGGGCGGTCAATGTGTC 59.112 50.000 0.00 0.00 37.42 3.67
5355 12464 1.337118 AAATTGGGCGGTCAATGTGT 58.663 45.000 0.00 0.00 37.42 3.72
5360 12469 0.885196 GCTGTAAATTGGGCGGTCAA 59.115 50.000 0.00 0.00 0.00 3.18
5446 12555 4.976996 TGCACATTCGCGTGTAGA 57.023 50.000 5.77 0.00 39.19 2.59
5467 12580 2.736719 GCAGTACGTGATCAGAGCATGT 60.737 50.000 17.43 17.43 38.84 3.21
5477 12590 1.676678 ATGGGCGAGCAGTACGTGAT 61.677 55.000 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.