Multiple sequence alignment - TraesCS2B01G420900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G420900 chr2B 100.000 4987 0 0 1 4987 603923284 603918298 0.000000e+00 9210.0
1 TraesCS2B01G420900 chr2D 85.774 2376 168 80 1849 4149 513104796 513102516 0.000000e+00 2359.0
2 TraesCS2B01G420900 chr2D 88.279 401 17 13 565 944 513105966 513105575 2.120000e-123 453.0
3 TraesCS2B01G420900 chr2D 82.505 503 41 23 1327 1792 513105279 513104787 1.010000e-106 398.0
4 TraesCS2B01G420900 chr2D 89.726 292 25 4 998 1286 513105577 513105288 7.890000e-98 368.0
5 TraesCS2B01G420900 chr2D 93.023 258 9 2 3 251 513106642 513106385 7.890000e-98 368.0
6 TraesCS2B01G420900 chr2D 96.753 154 4 1 4204 4357 513102511 513102359 6.410000e-64 255.0
7 TraesCS2B01G420900 chr2D 93.750 128 6 2 440 566 513106127 513106001 1.830000e-44 191.0
8 TraesCS2B01G420900 chr2A 84.395 1429 100 54 1912 3291 656967453 656966099 0.000000e+00 1290.0
9 TraesCS2B01G420900 chr2A 85.023 1095 93 32 3262 4317 656966096 656965034 0.000000e+00 1048.0
10 TraesCS2B01G420900 chr2A 84.060 872 65 35 455 1284 656968823 656967984 0.000000e+00 773.0
11 TraesCS2B01G420900 chr2A 83.300 497 44 23 1327 1792 656967973 656967485 5.970000e-114 422.0
12 TraesCS2B01G420900 chr2A 96.117 206 8 0 4420 4625 27110121 27110326 2.220000e-88 337.0
13 TraesCS2B01G420900 chr2A 84.553 369 11 12 1 360 656969316 656968985 1.730000e-84 324.0
14 TraesCS2B01G420900 chr2A 91.525 59 5 0 363 421 656968944 656968886 1.150000e-11 82.4
15 TraesCS2B01G420900 chr1A 93.782 579 24 5 4421 4987 586114766 586115344 0.000000e+00 859.0
16 TraesCS2B01G420900 chr1A 90.000 230 21 2 4423 4651 12181617 12181845 3.770000e-76 296.0
17 TraesCS2B01G420900 chr1A 100.000 36 0 0 1791 1826 512833723 512833758 3.220000e-07 67.6
18 TraesCS2B01G420900 chr1B 92.386 591 21 7 4420 4987 170584402 170583813 0.000000e+00 821.0
19 TraesCS2B01G420900 chr3A 88.761 347 23 7 4656 4987 19974195 19973850 1.290000e-110 411.0
20 TraesCS2B01G420900 chr3A 90.870 230 21 0 4422 4651 619069950 619070179 4.850000e-80 309.0
21 TraesCS2B01G420900 chr3D 87.320 347 28 7 4656 4987 16630963 16631308 2.820000e-102 383.0
22 TraesCS2B01G420900 chr3D 90.000 230 23 0 4422 4651 519327490 519327719 1.050000e-76 298.0
23 TraesCS2B01G420900 chr3B 86.471 340 33 6 4661 4987 24056851 24057190 1.320000e-95 361.0
24 TraesCS2B01G420900 chr3B 94.146 205 12 0 4421 4625 20999504 20999708 3.750000e-81 313.0
25 TraesCS2B01G420900 chr5D 89.958 239 23 1 4414 4652 532654425 532654662 1.740000e-79 307.0
26 TraesCS2B01G420900 chr6A 90.000 230 19 1 4422 4651 57697433 57697208 1.360000e-75 294.0
27 TraesCS2B01G420900 chr6D 89.565 230 24 0 4422 4651 454277073 454277302 4.880000e-75 292.0
28 TraesCS2B01G420900 chr4B 83.936 249 22 12 2295 2541 402080826 402081058 6.500000e-54 222.0
29 TraesCS2B01G420900 chr4B 79.012 324 39 16 564 886 402080123 402080418 1.420000e-45 195.0
30 TraesCS2B01G420900 chr4B 95.556 45 2 0 2141 2185 402080778 402080822 6.930000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G420900 chr2B 603918298 603923284 4986 True 9210.000000 9210 100.000000 1 4987 1 chr2B.!!$R1 4986
1 TraesCS2B01G420900 chr2D 513102359 513106642 4283 True 627.428571 2359 89.972857 3 4357 7 chr2D.!!$R1 4354
2 TraesCS2B01G420900 chr2A 656965034 656969316 4282 True 656.566667 1290 85.476000 1 4317 6 chr2A.!!$R1 4316
3 TraesCS2B01G420900 chr1A 586114766 586115344 578 False 859.000000 859 93.782000 4421 4987 1 chr1A.!!$F3 566
4 TraesCS2B01G420900 chr1B 170583813 170584402 589 True 821.000000 821 92.386000 4420 4987 1 chr1B.!!$R1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
607 848 0.032952 GGTGGCAGTACAACGTCTGA 59.967 55.0 6.19 0.0 34.02 3.27 F
735 980 0.172352 AGACAGACGCAAGCTCTAGC 59.828 55.0 0.00 0.0 45.62 3.42 F
1361 1637 0.242017 GCCATGTCTGTTCTGTTGCC 59.758 55.0 0.00 0.0 0.00 4.52 F
2630 2981 0.038159 GCGCTGTCAACCAGTACTCT 60.038 55.0 0.00 0.0 43.55 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2070 2388 0.103937 CCTTGAGGCGATCTGGTCTC 59.896 60.0 0.00 0.0 39.12 3.36 R
2074 2392 0.179089 CAGACCTTGAGGCGATCTGG 60.179 60.0 7.80 0.0 39.32 3.86 R
3156 3531 0.452184 AGTGTCGTCTACGGAGCATG 59.548 55.0 2.24 0.0 40.29 4.06 R
4007 4465 0.101399 ACGGACAGACAGATCGATGC 59.899 55.0 0.54 0.0 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 148 0.614134 GGGAGGTGTCGTAGGGTTCT 60.614 60.000 0.00 0.00 0.00 3.01
125 149 0.531200 GGAGGTGTCGTAGGGTTCTG 59.469 60.000 0.00 0.00 0.00 3.02
126 150 0.108756 GAGGTGTCGTAGGGTTCTGC 60.109 60.000 0.00 0.00 0.00 4.26
127 151 1.079336 GGTGTCGTAGGGTTCTGCC 60.079 63.158 0.00 0.00 0.00 4.85
128 152 1.542187 GGTGTCGTAGGGTTCTGCCT 61.542 60.000 0.00 0.00 37.43 4.75
129 153 0.389948 GTGTCGTAGGGTTCTGCCTG 60.390 60.000 0.00 0.00 37.43 4.85
130 154 0.830444 TGTCGTAGGGTTCTGCCTGT 60.830 55.000 0.00 0.00 37.43 4.00
131 155 0.389948 GTCGTAGGGTTCTGCCTGTG 60.390 60.000 0.00 0.00 37.43 3.66
132 156 0.830444 TCGTAGGGTTCTGCCTGTGT 60.830 55.000 0.00 0.00 37.43 3.72
133 157 0.034896 CGTAGGGTTCTGCCTGTGTT 59.965 55.000 0.00 0.00 37.43 3.32
134 158 1.809684 GTAGGGTTCTGCCTGTGTTC 58.190 55.000 0.00 0.00 37.43 3.18
135 159 1.348036 GTAGGGTTCTGCCTGTGTTCT 59.652 52.381 0.00 0.00 37.43 3.01
136 160 0.109342 AGGGTTCTGCCTGTGTTCTG 59.891 55.000 0.00 0.00 37.43 3.02
137 161 1.518903 GGGTTCTGCCTGTGTTCTGC 61.519 60.000 0.00 0.00 37.43 4.26
138 162 0.536006 GGTTCTGCCTGTGTTCTGCT 60.536 55.000 0.00 0.00 0.00 4.24
139 163 1.312815 GTTCTGCCTGTGTTCTGCTT 58.687 50.000 0.00 0.00 0.00 3.91
140 164 1.678101 GTTCTGCCTGTGTTCTGCTTT 59.322 47.619 0.00 0.00 0.00 3.51
141 165 2.878406 GTTCTGCCTGTGTTCTGCTTTA 59.122 45.455 0.00 0.00 0.00 1.85
142 166 3.423539 TCTGCCTGTGTTCTGCTTTAT 57.576 42.857 0.00 0.00 0.00 1.40
143 167 3.754965 TCTGCCTGTGTTCTGCTTTATT 58.245 40.909 0.00 0.00 0.00 1.40
144 168 4.144297 TCTGCCTGTGTTCTGCTTTATTT 58.856 39.130 0.00 0.00 0.00 1.40
145 169 4.584325 TCTGCCTGTGTTCTGCTTTATTTT 59.416 37.500 0.00 0.00 0.00 1.82
146 170 4.870363 TGCCTGTGTTCTGCTTTATTTTC 58.130 39.130 0.00 0.00 0.00 2.29
160 184 6.039493 TGCTTTATTTTCAGGTGGTAAAACGA 59.961 34.615 0.00 0.00 0.00 3.85
167 191 1.575922 GTGGTAAAACGAACGGGGC 59.424 57.895 0.00 0.00 0.00 5.80
289 348 2.292267 ACTTCAGTGAACTGTTGCTGG 58.708 47.619 16.56 8.24 44.12 4.85
344 406 1.523758 CTTTAAACTGCTGGCCTCGT 58.476 50.000 3.32 0.00 0.00 4.18
417 585 0.543277 TGACACATCCATGAGCTCCC 59.457 55.000 12.15 0.00 0.00 4.30
421 589 0.107508 ACATCCATGAGCTCCCGTTG 60.108 55.000 12.15 5.32 0.00 4.10
425 593 0.745845 CCATGAGCTCCCGTTGGAAG 60.746 60.000 12.15 0.00 41.17 3.46
580 817 2.919602 AGAACCTCTCTCTCTCTCTGGT 59.080 50.000 0.00 0.00 0.00 4.00
581 818 4.108570 AGAACCTCTCTCTCTCTCTGGTA 58.891 47.826 0.00 0.00 0.00 3.25
582 819 4.164221 AGAACCTCTCTCTCTCTCTGGTAG 59.836 50.000 0.00 0.00 0.00 3.18
588 825 6.335471 TCTCTCTCTCTCTGGTAGTATACG 57.665 45.833 0.00 0.00 44.28 3.06
601 842 3.515330 AGTATACGGTGGCAGTACAAC 57.485 47.619 0.00 0.00 0.00 3.32
607 848 0.032952 GGTGGCAGTACAACGTCTGA 59.967 55.000 6.19 0.00 34.02 3.27
735 980 0.172352 AGACAGACGCAAGCTCTAGC 59.828 55.000 0.00 0.00 45.62 3.42
741 986 1.001815 GACGCAAGCTCTAGCCTCTAG 60.002 57.143 0.00 0.00 43.38 2.43
758 1003 0.761187 TAGCTCTAGCCATGCAAGGG 59.239 55.000 10.51 6.76 43.76 3.95
786 1034 2.591429 CCACGGAGCACAGCACAA 60.591 61.111 0.00 0.00 0.00 3.33
787 1035 2.633657 CACGGAGCACAGCACAAC 59.366 61.111 0.00 0.00 0.00 3.32
854 1111 4.145807 CACCACCACCAGTATAAAAACCA 58.854 43.478 0.00 0.00 0.00 3.67
864 1121 4.007659 AGTATAAAAACCAACTCCAGCCG 58.992 43.478 0.00 0.00 0.00 5.52
880 1137 0.317854 GCCGTCTTGTCTTTTGCCAC 60.318 55.000 0.00 0.00 0.00 5.01
914 1182 1.004560 CAAGGGCAGCTTCGACAGA 60.005 57.895 0.00 0.00 0.00 3.41
932 1200 1.290732 AGAGGAGAAAGGAGGAGGAGG 59.709 57.143 0.00 0.00 0.00 4.30
941 1209 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
942 1210 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
943 1211 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
944 1212 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
945 1213 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
946 1214 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
947 1215 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
948 1216 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
949 1217 0.998945 AGGAGGAGGAGGAGGAGGAG 60.999 65.000 0.00 0.00 0.00 3.69
950 1218 1.152546 GAGGAGGAGGAGGAGGAGC 60.153 68.421 0.00 0.00 0.00 4.70
961 1229 2.024871 GAGGAGCGACGGTGATCG 59.975 66.667 3.31 0.00 45.09 3.69
1006 1274 2.750657 GCCAGACCAGAGATGGGGG 61.751 68.421 0.00 0.00 34.52 5.40
1143 1411 2.135933 GAACACAGTGAGTTCCTTCCG 58.864 52.381 19.28 0.00 39.48 4.30
1164 1438 3.925913 CGCTCTTCTTCTTCTTCTTCCTG 59.074 47.826 0.00 0.00 0.00 3.86
1169 1443 5.986135 TCTTCTTCTTCTTCTTCCTGAAACG 59.014 40.000 0.00 0.00 33.79 3.60
1189 1463 9.069082 TGAAACGTATTCCTTTCCAAAGAATAA 57.931 29.630 0.32 0.00 38.28 1.40
1193 1467 9.020731 ACGTATTCCTTTCCAAAGAATAATTGT 57.979 29.630 0.32 2.14 38.28 2.71
1197 1471 9.933723 ATTCCTTTCCAAAGAATAATTGTTCTG 57.066 29.630 17.04 7.53 38.41 3.02
1198 1472 7.378181 TCCTTTCCAAAGAATAATTGTTCTGC 58.622 34.615 17.04 0.00 38.41 4.26
1200 1474 7.874528 CCTTTCCAAAGAATAATTGTTCTGCTT 59.125 33.333 17.04 7.06 38.41 3.91
1207 1481 9.688592 AAAGAATAATTGTTCTGCTTCTTCTTG 57.311 29.630 17.04 0.00 38.41 3.02
1210 1484 8.807667 AATAATTGTTCTGCTTCTTCTTGTTG 57.192 30.769 0.00 0.00 0.00 3.33
1213 1487 4.985413 TGTTCTGCTTCTTCTTGTTGTTG 58.015 39.130 0.00 0.00 0.00 3.33
1214 1488 3.698029 TCTGCTTCTTCTTGTTGTTGC 57.302 42.857 0.00 0.00 0.00 4.17
1216 1490 3.313526 TCTGCTTCTTCTTGTTGTTGCTC 59.686 43.478 0.00 0.00 0.00 4.26
1217 1491 3.282021 TGCTTCTTCTTGTTGTTGCTCT 58.718 40.909 0.00 0.00 0.00 4.09
1220 1496 4.737279 GCTTCTTCTTGTTGTTGCTCTTTC 59.263 41.667 0.00 0.00 0.00 2.62
1280 1556 2.111043 ACCGGTTGTCTGCTGTGG 59.889 61.111 0.00 0.00 0.00 4.17
1286 1562 2.294074 GGTTGTCTGCTGTGGTTGTAA 58.706 47.619 0.00 0.00 0.00 2.41
1287 1563 2.032924 GGTTGTCTGCTGTGGTTGTAAC 59.967 50.000 0.00 0.00 0.00 2.50
1289 1565 3.275617 TGTCTGCTGTGGTTGTAACTT 57.724 42.857 0.00 0.00 0.00 2.66
1290 1566 2.942376 TGTCTGCTGTGGTTGTAACTTG 59.058 45.455 0.00 0.00 0.00 3.16
1291 1567 2.290641 GTCTGCTGTGGTTGTAACTTGG 59.709 50.000 0.00 0.00 0.00 3.61
1293 1569 3.134985 TCTGCTGTGGTTGTAACTTGGTA 59.865 43.478 0.00 0.00 0.00 3.25
1294 1570 3.207778 TGCTGTGGTTGTAACTTGGTAC 58.792 45.455 0.00 0.00 0.00 3.34
1295 1571 2.551032 GCTGTGGTTGTAACTTGGTACC 59.449 50.000 4.43 4.43 0.00 3.34
1296 1572 3.811083 CTGTGGTTGTAACTTGGTACCA 58.189 45.455 11.60 11.60 36.58 3.25
1297 1573 4.394729 CTGTGGTTGTAACTTGGTACCAT 58.605 43.478 17.17 3.16 40.66 3.55
1298 1574 4.138290 TGTGGTTGTAACTTGGTACCATG 58.862 43.478 22.78 22.78 40.66 3.66
1299 1575 3.057806 GTGGTTGTAACTTGGTACCATGC 60.058 47.826 23.97 10.85 40.66 4.06
1300 1576 3.181438 TGGTTGTAACTTGGTACCATGCT 60.181 43.478 23.97 16.39 34.13 3.79
1301 1577 3.824443 GGTTGTAACTTGGTACCATGCTT 59.176 43.478 23.97 18.82 0.00 3.91
1302 1578 4.320935 GGTTGTAACTTGGTACCATGCTTG 60.321 45.833 23.97 11.43 0.00 4.01
1303 1579 2.817258 TGTAACTTGGTACCATGCTTGC 59.183 45.455 23.97 19.42 0.00 4.01
1304 1580 2.292828 AACTTGGTACCATGCTTGCT 57.707 45.000 23.97 5.07 0.00 3.91
1305 1581 3.433306 AACTTGGTACCATGCTTGCTA 57.567 42.857 23.97 3.26 0.00 3.49
1306 1582 3.652057 ACTTGGTACCATGCTTGCTAT 57.348 42.857 23.97 3.74 0.00 2.97
1307 1583 3.968265 ACTTGGTACCATGCTTGCTATT 58.032 40.909 23.97 3.07 0.00 1.73
1308 1584 4.344104 ACTTGGTACCATGCTTGCTATTT 58.656 39.130 23.97 2.41 0.00 1.40
1309 1585 4.772100 ACTTGGTACCATGCTTGCTATTTT 59.228 37.500 23.97 1.75 0.00 1.82
1310 1586 4.717233 TGGTACCATGCTTGCTATTTTG 57.283 40.909 11.60 0.00 0.00 2.44
1311 1587 4.085733 TGGTACCATGCTTGCTATTTTGT 58.914 39.130 11.60 0.00 0.00 2.83
1312 1588 4.526262 TGGTACCATGCTTGCTATTTTGTT 59.474 37.500 11.60 0.00 0.00 2.83
1313 1589 4.864247 GGTACCATGCTTGCTATTTTGTTG 59.136 41.667 7.15 0.00 0.00 3.33
1314 1590 4.870123 ACCATGCTTGCTATTTTGTTGA 57.130 36.364 0.00 0.00 0.00 3.18
1315 1591 5.410355 ACCATGCTTGCTATTTTGTTGAT 57.590 34.783 0.00 0.00 0.00 2.57
1316 1592 5.797051 ACCATGCTTGCTATTTTGTTGATT 58.203 33.333 0.00 0.00 0.00 2.57
1317 1593 6.934056 ACCATGCTTGCTATTTTGTTGATTA 58.066 32.000 0.00 0.00 0.00 1.75
1318 1594 7.037438 ACCATGCTTGCTATTTTGTTGATTAG 58.963 34.615 0.00 0.00 0.00 1.73
1319 1595 7.037438 CCATGCTTGCTATTTTGTTGATTAGT 58.963 34.615 0.00 0.00 0.00 2.24
1320 1596 7.546667 CCATGCTTGCTATTTTGTTGATTAGTT 59.453 33.333 0.00 0.00 0.00 2.24
1321 1597 8.589629 CATGCTTGCTATTTTGTTGATTAGTTC 58.410 33.333 0.00 0.00 0.00 3.01
1322 1598 7.885297 TGCTTGCTATTTTGTTGATTAGTTCT 58.115 30.769 0.00 0.00 0.00 3.01
1323 1599 7.809331 TGCTTGCTATTTTGTTGATTAGTTCTG 59.191 33.333 0.00 0.00 0.00 3.02
1324 1600 7.274250 GCTTGCTATTTTGTTGATTAGTTCTGG 59.726 37.037 0.00 0.00 0.00 3.86
1325 1601 6.620678 TGCTATTTTGTTGATTAGTTCTGGC 58.379 36.000 0.00 0.00 0.00 4.85
1359 1635 2.880268 TCTTGCCATGTCTGTTCTGTTG 59.120 45.455 0.00 0.00 0.00 3.33
1361 1637 0.242017 GCCATGTCTGTTCTGTTGCC 59.758 55.000 0.00 0.00 0.00 4.52
1362 1638 1.901591 CCATGTCTGTTCTGTTGCCT 58.098 50.000 0.00 0.00 0.00 4.75
1379 1655 1.896220 CCTGTTTTGCACTAGCCAGA 58.104 50.000 0.00 0.00 41.13 3.86
1381 1657 2.421424 CCTGTTTTGCACTAGCCAGATC 59.579 50.000 0.00 0.00 41.13 2.75
1382 1658 2.076100 TGTTTTGCACTAGCCAGATCG 58.924 47.619 0.00 0.00 41.13 3.69
1383 1659 2.076863 GTTTTGCACTAGCCAGATCGT 58.923 47.619 0.00 0.00 41.13 3.73
1385 1661 1.725641 TTGCACTAGCCAGATCGTTG 58.274 50.000 0.00 0.00 41.13 4.10
1386 1662 0.740868 TGCACTAGCCAGATCGTTGC 60.741 55.000 0.00 0.00 41.13 4.17
1387 1663 0.740868 GCACTAGCCAGATCGTTGCA 60.741 55.000 6.87 0.00 33.58 4.08
1388 1664 1.284657 CACTAGCCAGATCGTTGCAG 58.715 55.000 6.87 5.13 0.00 4.41
1389 1665 0.460987 ACTAGCCAGATCGTTGCAGC 60.461 55.000 6.87 0.00 0.00 5.25
1391 1667 2.906182 TAGCCAGATCGTTGCAGCCG 62.906 60.000 0.00 0.00 0.00 5.52
1392 1668 2.125552 CCAGATCGTTGCAGCCGA 60.126 61.111 12.14 12.14 38.89 5.54
1393 1669 2.169789 CCAGATCGTTGCAGCCGAG 61.170 63.158 14.56 3.52 37.81 4.63
1411 1687 1.609072 GAGCTGTCCTTTGGGTTGTTC 59.391 52.381 0.00 0.00 0.00 3.18
1431 1707 7.421530 TGTTCGTCTCCTTTTAATCTCTTTG 57.578 36.000 0.00 0.00 0.00 2.77
1434 1710 6.947464 TCGTCTCCTTTTAATCTCTTTGGAT 58.053 36.000 0.00 0.00 0.00 3.41
1435 1711 7.042335 TCGTCTCCTTTTAATCTCTTTGGATC 58.958 38.462 0.00 0.00 0.00 3.36
1554 1840 3.950395 AGCCATCTGCAGGTTATTTTCTC 59.050 43.478 15.13 0.00 44.83 2.87
1583 1892 3.614092 CTGCACCCATCACTCTTGTATT 58.386 45.455 0.00 0.00 0.00 1.89
1609 1918 3.907260 TTGCGGAGGAGCCTGCAAG 62.907 63.158 8.78 0.00 44.91 4.01
1611 1920 2.125350 CGGAGGAGCCTGCAAGAC 60.125 66.667 8.78 0.00 34.07 3.01
1613 1922 1.376553 GGAGGAGCCTGCAAGACAC 60.377 63.158 2.90 0.00 34.07 3.67
1616 1925 0.901124 AGGAGCCTGCAAGACACTAG 59.099 55.000 0.00 0.00 34.07 2.57
1617 1926 0.610687 GGAGCCTGCAAGACACTAGT 59.389 55.000 0.00 0.00 34.07 2.57
1618 1927 1.825474 GGAGCCTGCAAGACACTAGTA 59.175 52.381 0.00 0.00 34.07 1.82
1619 1928 2.417515 GGAGCCTGCAAGACACTAGTAC 60.418 54.545 0.00 0.00 34.07 2.73
1625 1936 3.897325 TGCAAGACACTAGTACAAGACG 58.103 45.455 0.00 0.00 0.00 4.18
1726 2037 7.263496 AGATGAAGCTCTGCCATTTTAATTTC 58.737 34.615 0.00 0.00 0.00 2.17
1745 2056 9.859427 TTAATTTCCATGCATCTTTCTTTACTG 57.141 29.630 0.00 0.00 0.00 2.74
1746 2057 6.899393 TTTCCATGCATCTTTCTTTACTGT 57.101 33.333 0.00 0.00 0.00 3.55
1749 2060 6.913170 TCCATGCATCTTTCTTTACTGTTTC 58.087 36.000 0.00 0.00 0.00 2.78
1752 2063 8.514594 CCATGCATCTTTCTTTACTGTTTCTTA 58.485 33.333 0.00 0.00 0.00 2.10
1753 2064 9.552114 CATGCATCTTTCTTTACTGTTTCTTAG 57.448 33.333 0.00 0.00 0.00 2.18
1754 2065 8.677148 TGCATCTTTCTTTACTGTTTCTTAGT 57.323 30.769 0.00 0.00 0.00 2.24
1783 2094 9.314133 AGAAATCTTTCTTTATTTAACCAGCCT 57.686 29.630 0.00 0.00 44.70 4.58
1792 2103 6.886178 TTATTTAACCAGCCTAGGAAGTCT 57.114 37.500 14.75 0.00 0.00 3.24
1793 2104 5.780958 ATTTAACCAGCCTAGGAAGTCTT 57.219 39.130 14.75 0.00 0.00 3.01
1794 2105 5.578157 TTTAACCAGCCTAGGAAGTCTTT 57.422 39.130 14.75 0.00 0.00 2.52
1795 2106 5.578157 TTAACCAGCCTAGGAAGTCTTTT 57.422 39.130 14.75 0.00 0.00 2.27
1796 2107 4.455070 AACCAGCCTAGGAAGTCTTTTT 57.545 40.909 14.75 0.00 0.00 1.94
1821 2132 8.612145 TTTATATATAAAAGAAGGGCTCTCCCC 58.388 37.037 14.26 0.00 39.99 4.81
1829 2140 3.842570 GGCTCTCCCCTTCCCTTT 58.157 61.111 0.00 0.00 0.00 3.11
1830 2141 2.088134 GGCTCTCCCCTTCCCTTTT 58.912 57.895 0.00 0.00 0.00 2.27
1831 2142 0.409876 GGCTCTCCCCTTCCCTTTTT 59.590 55.000 0.00 0.00 0.00 1.94
1832 2143 1.617263 GGCTCTCCCCTTCCCTTTTTC 60.617 57.143 0.00 0.00 0.00 2.29
1833 2144 1.075536 GCTCTCCCCTTCCCTTTTTCA 59.924 52.381 0.00 0.00 0.00 2.69
1834 2145 2.291865 GCTCTCCCCTTCCCTTTTTCAT 60.292 50.000 0.00 0.00 0.00 2.57
1835 2146 3.819388 GCTCTCCCCTTCCCTTTTTCATT 60.819 47.826 0.00 0.00 0.00 2.57
1836 2147 4.569865 GCTCTCCCCTTCCCTTTTTCATTA 60.570 45.833 0.00 0.00 0.00 1.90
1837 2148 5.580022 CTCTCCCCTTCCCTTTTTCATTAA 58.420 41.667 0.00 0.00 0.00 1.40
1838 2149 5.971493 TCTCCCCTTCCCTTTTTCATTAAA 58.029 37.500 0.00 0.00 0.00 1.52
1839 2150 6.386284 TCTCCCCTTCCCTTTTTCATTAAAA 58.614 36.000 0.00 0.00 34.64 1.52
1840 2151 6.847036 TCTCCCCTTCCCTTTTTCATTAAAAA 59.153 34.615 0.00 0.00 41.21 1.94
1868 2179 4.120589 GCCTCGGAAGTCATAGGTTTTAG 58.879 47.826 0.00 0.00 0.00 1.85
1869 2180 4.382793 GCCTCGGAAGTCATAGGTTTTAGT 60.383 45.833 0.00 0.00 0.00 2.24
1870 2181 5.163478 GCCTCGGAAGTCATAGGTTTTAGTA 60.163 44.000 0.00 0.00 0.00 1.82
1898 2209 5.825151 CCTTGTTTCTTGGGGATAAGAGATC 59.175 44.000 0.00 0.00 37.91 2.75
1908 2219 4.107820 GGGATAAGAGATCAGGCCCTATT 58.892 47.826 0.00 0.00 0.00 1.73
1909 2220 5.281314 GGGATAAGAGATCAGGCCCTATTA 58.719 45.833 0.00 0.00 0.00 0.98
1945 2260 2.715737 TGTCAACGCATTTTTAGCCC 57.284 45.000 0.00 0.00 0.00 5.19
1954 2269 3.734902 CGCATTTTTAGCCCAGTTCCATC 60.735 47.826 0.00 0.00 0.00 3.51
1956 2271 2.122783 TTTTAGCCCAGTTCCATCGG 57.877 50.000 0.00 0.00 0.00 4.18
1957 2272 0.988832 TTTAGCCCAGTTCCATCGGT 59.011 50.000 0.00 0.00 0.00 4.69
1958 2273 0.988832 TTAGCCCAGTTCCATCGGTT 59.011 50.000 0.00 0.00 0.00 4.44
2003 2318 5.691754 GCAAAGTTCACCTCCAAAACAATAG 59.308 40.000 0.00 0.00 0.00 1.73
2006 2321 7.506328 AAGTTCACCTCCAAAACAATAGTAC 57.494 36.000 0.00 0.00 0.00 2.73
2040 2355 5.883661 TGTTACACCACGAATAGTACTAGC 58.116 41.667 8.85 2.39 0.00 3.42
2052 2370 3.305398 AGTACTAGCAGCAGTGTTCAC 57.695 47.619 0.00 0.00 0.00 3.18
2132 2450 2.294512 GGTATTCATTGCCAAGCCTAGC 59.705 50.000 0.00 0.00 0.00 3.42
2139 2457 1.825622 GCCAAGCCTAGCCACATCC 60.826 63.158 0.00 0.00 0.00 3.51
2142 2460 3.406595 AAGCCTAGCCACATCCGCC 62.407 63.158 0.00 0.00 0.00 6.13
2143 2461 4.175337 GCCTAGCCACATCCGCCA 62.175 66.667 0.00 0.00 0.00 5.69
2159 2477 1.739466 CGCCACATGCTTATCACACTT 59.261 47.619 0.00 0.00 38.05 3.16
2198 2521 2.665794 CGCTTCATCATGCATGCAGATC 60.666 50.000 26.69 14.03 27.49 2.75
2233 2565 6.690194 AAGCTAGAAAGTTAATCTGCATGG 57.310 37.500 0.00 0.00 0.00 3.66
2240 2572 7.910584 AGAAAGTTAATCTGCATGGGATTTTT 58.089 30.769 5.14 1.32 35.40 1.94
2266 2598 3.058016 CCCTGTGCACACTTTAGATGTTG 60.058 47.826 17.42 1.01 0.00 3.33
2267 2599 3.558505 CTGTGCACACTTTAGATGTTGC 58.441 45.455 17.42 0.00 0.00 4.17
2268 2600 3.213506 TGTGCACACTTTAGATGTTGCT 58.786 40.909 17.42 0.00 0.00 3.91
2269 2601 4.384940 TGTGCACACTTTAGATGTTGCTA 58.615 39.130 17.42 0.00 0.00 3.49
2313 2649 3.944055 TCTTTCTTTCAGAGACGGAGG 57.056 47.619 0.00 0.00 33.02 4.30
2369 2705 2.124778 GAGCAGCAAGGAGGAGGC 60.125 66.667 0.00 0.00 0.00 4.70
2370 2706 3.695747 GAGCAGCAAGGAGGAGGCC 62.696 68.421 0.00 0.00 0.00 5.19
2371 2707 4.811364 GCAGCAAGGAGGAGGCCC 62.811 72.222 0.00 0.00 0.00 5.80
2373 2709 4.682714 AGCAAGGAGGAGGCCCCA 62.683 66.667 12.24 0.00 37.41 4.96
2374 2710 3.661648 GCAAGGAGGAGGCCCCAA 61.662 66.667 12.24 0.00 37.41 4.12
2415 2757 3.815401 TCTGAAAAGGTTTGTGCTAGCTC 59.185 43.478 17.23 13.38 0.00 4.09
2420 2762 0.881796 GGTTTGTGCTAGCTCCAACC 59.118 55.000 27.18 27.18 31.44 3.77
2506 2850 2.155279 GACAAGAGAGCACCTTTTCCC 58.845 52.381 0.00 0.00 0.00 3.97
2515 2859 1.388217 ACCTTTTCCCCTGGGGTCA 60.388 57.895 30.69 16.45 44.74 4.02
2602 2953 2.423947 GCCAAGGAATCAGTGGGATGAT 60.424 50.000 4.01 0.00 41.72 2.45
2629 2980 1.014564 GGCGCTGTCAACCAGTACTC 61.015 60.000 7.64 0.00 43.55 2.59
2630 2981 0.038159 GCGCTGTCAACCAGTACTCT 60.038 55.000 0.00 0.00 43.55 3.24
2711 3065 1.521010 CTGTCAGAGGGATGCTGCG 60.521 63.158 0.00 0.00 33.45 5.18
2762 3119 2.097825 GCATGTTTGGAGCAAGGATCT 58.902 47.619 0.00 0.00 0.00 2.75
2779 3136 3.118884 GGATCTGGCGACTTTAAGGTACA 60.119 47.826 0.00 0.00 0.00 2.90
2803 3160 0.533978 TGCTGCAAAAGTAGCCACGA 60.534 50.000 0.00 0.00 39.15 4.35
2838 3195 8.454894 GGGAAAGTTGATCTGAAGAAGAAATAC 58.545 37.037 0.00 0.00 38.79 1.89
2864 3221 9.748708 CCTTCTTTTGTCTTCAATTATTTCACA 57.251 29.630 0.00 0.00 33.32 3.58
2868 3225 8.641499 TTTTGTCTTCAATTATTTCACACACC 57.359 30.769 0.00 0.00 33.32 4.16
2870 3227 7.581213 TGTCTTCAATTATTTCACACACCTT 57.419 32.000 0.00 0.00 0.00 3.50
2877 3234 8.417106 TCAATTATTTCACACACCTTTTGCTTA 58.583 29.630 0.00 0.00 0.00 3.09
2879 3236 3.684103 TTCACACACCTTTTGCTTACG 57.316 42.857 0.00 0.00 0.00 3.18
2881 3238 2.353269 TCACACACCTTTTGCTTACGTG 59.647 45.455 0.00 0.00 0.00 4.49
2884 3241 2.612212 CACACCTTTTGCTTACGTGTCT 59.388 45.455 0.00 0.00 35.56 3.41
2893 3250 8.328864 CCTTTTGCTTACGTGTCTCTTATTATC 58.671 37.037 0.00 0.00 0.00 1.75
2904 3261 3.796717 TCTCTTATTATCACTTGCGCACG 59.203 43.478 11.12 12.17 0.00 5.34
2905 3262 3.517602 TCTTATTATCACTTGCGCACGT 58.482 40.909 14.51 14.51 0.00 4.49
2968 3337 1.207791 AGCCACTTCATGTCCCTAGG 58.792 55.000 0.06 0.06 0.00 3.02
2975 3344 0.183492 TCATGTCCCTAGGCATTGGC 59.817 55.000 2.05 1.17 40.13 4.52
3029 3398 1.992538 TGGTGCAATGTCATGACCAA 58.007 45.000 22.85 5.83 33.72 3.67
3044 3416 2.158400 TGACCAAACCATCCAATCCACA 60.158 45.455 0.00 0.00 0.00 4.17
3052 3424 1.478916 CATCCAATCCACAATGCTGCA 59.521 47.619 4.13 4.13 0.00 4.41
3053 3425 1.855295 TCCAATCCACAATGCTGCAT 58.145 45.000 9.81 9.81 0.00 3.96
3054 3426 1.478916 TCCAATCCACAATGCTGCATG 59.521 47.619 17.00 12.48 0.00 4.06
3055 3427 1.286501 CAATCCACAATGCTGCATGC 58.713 50.000 17.00 11.82 43.25 4.06
3069 3441 1.813859 CATGCCTGCATCTTGTGGG 59.186 57.895 0.70 0.00 33.90 4.61
3070 3442 1.380785 ATGCCTGCATCTTGTGGGG 60.381 57.895 0.00 0.00 29.42 4.96
3071 3443 3.455469 GCCTGCATCTTGTGGGGC 61.455 66.667 0.00 0.00 0.00 5.80
3091 3466 2.695666 GCTTGTACTATGAGGGAGCTGA 59.304 50.000 0.00 0.00 0.00 4.26
3156 3531 5.980116 CAGGACTGTTGTATATCACTGTAGC 59.020 44.000 0.00 0.00 0.00 3.58
3157 3532 5.656859 AGGACTGTTGTATATCACTGTAGCA 59.343 40.000 0.00 0.00 0.00 3.49
3158 3533 6.325028 AGGACTGTTGTATATCACTGTAGCAT 59.675 38.462 0.00 0.00 0.00 3.79
3159 3534 6.422100 GGACTGTTGTATATCACTGTAGCATG 59.578 42.308 0.00 0.00 0.00 4.06
3160 3535 5.755375 ACTGTTGTATATCACTGTAGCATGC 59.245 40.000 10.51 10.51 0.00 4.06
3161 3536 5.917462 TGTTGTATATCACTGTAGCATGCT 58.083 37.500 25.99 25.99 0.00 3.79
3162 3537 5.985530 TGTTGTATATCACTGTAGCATGCTC 59.014 40.000 26.57 16.23 0.00 4.26
3163 3538 5.139435 TGTATATCACTGTAGCATGCTCC 57.861 43.478 26.57 14.57 0.00 4.70
3164 3539 2.800881 TATCACTGTAGCATGCTCCG 57.199 50.000 26.57 15.83 0.00 4.63
3165 3540 0.826715 ATCACTGTAGCATGCTCCGT 59.173 50.000 26.57 16.51 0.00 4.69
3166 3541 1.470051 TCACTGTAGCATGCTCCGTA 58.530 50.000 26.57 2.95 0.00 4.02
3167 3542 1.405463 TCACTGTAGCATGCTCCGTAG 59.595 52.381 26.57 19.18 0.00 3.51
3168 3543 1.405463 CACTGTAGCATGCTCCGTAGA 59.595 52.381 26.57 3.89 0.00 2.59
3169 3544 1.405821 ACTGTAGCATGCTCCGTAGAC 59.594 52.381 26.57 16.27 0.00 2.59
3170 3545 0.380733 TGTAGCATGCTCCGTAGACG 59.619 55.000 26.57 0.00 39.44 4.18
3171 3546 0.661552 GTAGCATGCTCCGTAGACGA 59.338 55.000 26.57 0.00 43.02 4.20
3172 3547 0.661552 TAGCATGCTCCGTAGACGAC 59.338 55.000 26.57 0.00 43.02 4.34
3173 3548 1.138883 GCATGCTCCGTAGACGACA 59.861 57.895 11.37 0.00 43.02 4.35
3174 3549 1.140407 GCATGCTCCGTAGACGACAC 61.140 60.000 11.37 0.00 43.02 3.67
3175 3550 0.452184 CATGCTCCGTAGACGACACT 59.548 55.000 3.07 0.00 43.02 3.55
3176 3551 1.135373 CATGCTCCGTAGACGACACTT 60.135 52.381 3.07 0.00 43.02 3.16
3177 3552 0.520404 TGCTCCGTAGACGACACTTC 59.480 55.000 3.07 0.00 43.02 3.01
3178 3553 0.520404 GCTCCGTAGACGACACTTCA 59.480 55.000 3.07 0.00 43.02 3.02
3179 3554 1.132643 GCTCCGTAGACGACACTTCAT 59.867 52.381 3.07 0.00 43.02 2.57
3180 3555 2.415625 GCTCCGTAGACGACACTTCATT 60.416 50.000 3.07 0.00 43.02 2.57
3181 3556 3.834610 CTCCGTAGACGACACTTCATTT 58.165 45.455 3.07 0.00 43.02 2.32
3182 3557 4.673580 GCTCCGTAGACGACACTTCATTTA 60.674 45.833 3.07 0.00 43.02 1.40
3183 3558 5.571784 TCCGTAGACGACACTTCATTTAT 57.428 39.130 3.07 0.00 43.02 1.40
3184 3559 5.337554 TCCGTAGACGACACTTCATTTATG 58.662 41.667 3.07 0.00 43.02 1.90
3192 3567 5.932303 ACGACACTTCATTTATGTAGTTGCT 59.068 36.000 0.00 0.00 36.46 3.91
3196 3571 7.165485 ACACTTCATTTATGTAGTTGCTGGTA 58.835 34.615 0.00 0.00 36.46 3.25
3198 3573 7.119116 CACTTCATTTATGTAGTTGCTGGTACA 59.881 37.037 0.00 0.00 36.46 2.90
3210 3585 3.304829 TGCTGGTACATGTATCTGCCTA 58.695 45.455 32.57 19.62 39.45 3.93
3226 3601 1.967319 CCTACATATGCACACCCCAC 58.033 55.000 1.58 0.00 0.00 4.61
3271 3646 6.456449 CCGTATTTGTACAAGGACAATGTAGC 60.456 42.308 8.56 0.00 39.04 3.58
3285 3693 0.184933 TGTAGCCCACCTTGCACTTT 59.815 50.000 0.00 0.00 0.00 2.66
3303 3711 5.517770 GCACTTTCAGTAATGGCATTTGATC 59.482 40.000 19.21 7.10 0.00 2.92
3322 3730 3.049708 TCTGCATTGTTCACTCCTGAG 57.950 47.619 0.00 0.00 0.00 3.35
3354 3762 0.179094 TGTACCCGTCGGCATTCATC 60.179 55.000 5.50 0.00 0.00 2.92
3355 3763 0.179094 GTACCCGTCGGCATTCATCA 60.179 55.000 5.50 0.00 0.00 3.07
3356 3764 0.104120 TACCCGTCGGCATTCATCAG 59.896 55.000 5.50 0.00 0.00 2.90
3359 3767 0.250038 CCGTCGGCATTCATCAGGAT 60.250 55.000 0.00 0.00 0.00 3.24
3360 3768 1.000843 CCGTCGGCATTCATCAGGATA 59.999 52.381 0.00 0.00 0.00 2.59
3369 3777 7.981789 TCGGCATTCATCAGGATAATAATAGTC 59.018 37.037 0.00 0.00 0.00 2.59
3395 3807 8.398665 CCAGGTAGAATTACAACATTAAAGCTC 58.601 37.037 0.00 0.00 0.00 4.09
3412 3824 1.528129 CTCTTCTGGTGGTTTGCTCC 58.472 55.000 0.00 0.00 0.00 4.70
3459 3873 5.791974 CACATGTCATTTAGCTTCTGAAACG 59.208 40.000 0.00 0.00 0.00 3.60
3470 3884 8.936070 TTAGCTTCTGAAACGCATAAATAGTA 57.064 30.769 0.00 0.00 0.00 1.82
3471 3885 7.235430 AGCTTCTGAAACGCATAAATAGTAC 57.765 36.000 4.72 0.00 0.00 2.73
3472 3886 7.042335 AGCTTCTGAAACGCATAAATAGTACT 58.958 34.615 0.00 0.00 0.00 2.73
3505 3919 3.291584 TGGTGTACTAGCTCAGATCCTG 58.708 50.000 0.00 0.00 0.00 3.86
3506 3920 2.035321 GGTGTACTAGCTCAGATCCTGC 59.965 54.545 0.00 0.00 0.00 4.85
3507 3921 2.690497 GTGTACTAGCTCAGATCCTGCA 59.310 50.000 0.00 0.00 0.00 4.41
3508 3922 2.954989 TGTACTAGCTCAGATCCTGCAG 59.045 50.000 6.78 6.78 0.00 4.41
3509 3923 2.450867 ACTAGCTCAGATCCTGCAGA 57.549 50.000 17.39 1.21 0.00 4.26
3510 3924 2.961510 ACTAGCTCAGATCCTGCAGAT 58.038 47.619 17.39 6.84 38.17 2.90
3526 3940 4.469657 TGCAGATCCTTGTGGTTTTACTT 58.530 39.130 0.00 0.00 34.23 2.24
3527 3941 4.278170 TGCAGATCCTTGTGGTTTTACTTG 59.722 41.667 0.00 0.00 34.23 3.16
3543 3962 8.666573 GGTTTTACTTGAGCTAGGAAATTAGAC 58.333 37.037 0.00 0.00 28.42 2.59
3545 3964 8.773404 TTTACTTGAGCTAGGAAATTAGACAC 57.227 34.615 0.00 0.00 0.00 3.67
3547 3966 5.485708 ACTTGAGCTAGGAAATTAGACACCT 59.514 40.000 0.00 0.00 36.65 4.00
3548 3967 6.668283 ACTTGAGCTAGGAAATTAGACACCTA 59.332 38.462 0.00 0.00 34.42 3.08
3549 3968 7.345914 ACTTGAGCTAGGAAATTAGACACCTAT 59.654 37.037 0.00 0.00 34.99 2.57
3550 3969 8.777578 TTGAGCTAGGAAATTAGACACCTATA 57.222 34.615 0.00 0.00 34.99 1.31
3551 3970 8.958060 TGAGCTAGGAAATTAGACACCTATAT 57.042 34.615 0.00 0.00 34.99 0.86
3582 4014 0.899720 ATGGTTGCATGCCAAGGAAG 59.100 50.000 16.68 0.00 39.72 3.46
3600 4032 8.846211 CCAAGGAAGTAAATTTGAGAGTTACAA 58.154 33.333 0.00 0.00 40.36 2.41
3601 4033 9.665264 CAAGGAAGTAAATTTGAGAGTTACAAC 57.335 33.333 0.00 0.00 40.36 3.32
3610 4042 2.300152 TGAGAGTTACAACCAGCAGGAG 59.700 50.000 0.35 0.00 38.69 3.69
3614 4046 2.302157 AGTTACAACCAGCAGGAGTACC 59.698 50.000 0.35 0.00 38.69 3.34
3616 4048 0.977395 ACAACCAGCAGGAGTACCTC 59.023 55.000 0.35 0.00 45.94 3.85
3620 4052 1.110442 CCAGCAGGAGTACCTCTCTG 58.890 60.000 0.00 0.00 45.94 3.35
3636 4072 0.535335 TCTGTTTAGGCCGTAGCTGG 59.465 55.000 0.00 0.00 39.73 4.85
3644 4080 4.941609 CCGTAGCTGGCATCAACT 57.058 55.556 0.00 0.00 0.00 3.16
3704 4141 5.698832 TGTTTTCAGCAGATAATCAAACCG 58.301 37.500 2.20 0.00 0.00 4.44
3710 4147 2.286418 GCAGATAATCAAACCGGAAGCG 60.286 50.000 9.46 0.00 0.00 4.68
3730 4170 2.427453 CGCACTACTATCCTGGTCTTGT 59.573 50.000 0.00 0.00 0.00 3.16
3742 4182 1.490490 TGGTCTTGTGGTGAAGAAGCT 59.510 47.619 0.00 0.00 33.73 3.74
3753 4208 1.909302 TGAAGAAGCTAGACCCCAAGG 59.091 52.381 0.00 0.00 40.04 3.61
3791 4246 2.125753 CAGTGCTCCCTGTCGCTC 60.126 66.667 0.00 0.00 0.00 5.03
3816 4271 3.474570 GCCTGGACCCGAGATGCT 61.475 66.667 0.00 0.00 0.00 3.79
3869 4324 0.814410 AAGGCAGCTGCATCATCTCG 60.814 55.000 37.63 0.00 44.36 4.04
3872 4327 1.819226 GCAGCTGCATCATCTCGTCG 61.819 60.000 33.36 0.00 41.59 5.12
3875 4330 1.535636 GCTGCATCATCTCGTCGTCG 61.536 60.000 0.00 0.00 38.55 5.12
3879 4334 1.011019 ATCATCTCGTCGTCGTCGC 60.011 57.895 7.01 0.00 38.33 5.19
3913 4368 4.364318 GAGGAGCTCCAGCCACTA 57.636 61.111 33.90 0.00 43.38 2.74
3977 4432 0.042431 AGCTCTCCCTGTCCATCTGT 59.958 55.000 0.00 0.00 0.00 3.41
3980 4435 0.618680 TCTCCCTGTCCATCTGTGGG 60.619 60.000 0.00 0.00 46.06 4.61
4007 4465 1.001815 ACGACTGGCCGAAATTTTGTG 60.002 47.619 0.00 0.00 0.00 3.33
4017 4479 3.787634 CCGAAATTTTGTGCATCGATCTG 59.212 43.478 5.25 0.00 35.65 2.90
4024 4486 1.134995 TGTGCATCGATCTGTCTGTCC 60.135 52.381 0.00 0.00 0.00 4.02
4047 4510 0.465460 ACTCGTTTGGTGCATGGTGT 60.465 50.000 0.00 0.00 0.00 4.16
4060 4523 4.516698 GTGCATGGTGTTAGGATGATTAGG 59.483 45.833 0.00 0.00 0.00 2.69
4096 4559 7.419711 TGTTAGGTTAGGATTAGGAGTTCAG 57.580 40.000 0.00 0.00 0.00 3.02
4104 4567 4.283722 AGGATTAGGAGTTCAGTGACGTTT 59.716 41.667 0.00 0.00 0.00 3.60
4105 4568 5.479375 AGGATTAGGAGTTCAGTGACGTTTA 59.521 40.000 0.00 0.00 0.00 2.01
4126 4593 7.222224 CGTTTATTAGAGTTAGCAGGTTACCAG 59.778 40.741 3.51 0.00 0.00 4.00
4144 4611 3.209410 CCAGGTTGCAAAGGCTATCTAG 58.791 50.000 0.00 0.00 33.84 2.43
4163 4630 0.107459 GCTAGCTCCCCACTTTCAGG 60.107 60.000 7.70 0.00 0.00 3.86
4165 4632 1.562672 TAGCTCCCCACTTTCAGGGC 61.563 60.000 0.00 0.00 45.39 5.19
4202 4669 1.374947 CTTTCGGTCTTGGGCCAGA 59.625 57.895 6.23 3.75 0.00 3.86
4318 4785 0.922738 TCCGGAGTAGGGAGGGAGAA 60.923 60.000 0.00 0.00 0.00 2.87
4350 4817 4.105727 CTGGCGAGATCAGCAGTG 57.894 61.111 13.87 0.00 36.08 3.66
4357 4824 2.693069 CGAGATCAGCAGTGTTCCTTT 58.307 47.619 0.00 0.00 0.00 3.11
4358 4825 3.070018 CGAGATCAGCAGTGTTCCTTTT 58.930 45.455 0.00 0.00 0.00 2.27
4359 4826 3.499918 CGAGATCAGCAGTGTTCCTTTTT 59.500 43.478 0.00 0.00 0.00 1.94
4360 4827 4.612259 CGAGATCAGCAGTGTTCCTTTTTG 60.612 45.833 0.00 0.00 0.00 2.44
4361 4828 3.571401 AGATCAGCAGTGTTCCTTTTTGG 59.429 43.478 0.00 0.00 37.10 3.28
4362 4829 2.733956 TCAGCAGTGTTCCTTTTTGGT 58.266 42.857 0.00 0.00 37.07 3.67
4363 4830 2.426738 TCAGCAGTGTTCCTTTTTGGTG 59.573 45.455 0.00 0.00 38.29 4.17
4364 4831 2.166254 CAGCAGTGTTCCTTTTTGGTGT 59.834 45.455 0.00 0.00 37.07 4.16
4365 4832 3.380004 CAGCAGTGTTCCTTTTTGGTGTA 59.620 43.478 0.00 0.00 37.07 2.90
4366 4833 3.632145 AGCAGTGTTCCTTTTTGGTGTAG 59.368 43.478 0.00 0.00 37.07 2.74
4367 4834 3.795488 GCAGTGTTCCTTTTTGGTGTAGC 60.795 47.826 0.00 0.00 37.07 3.58
4368 4835 2.956333 AGTGTTCCTTTTTGGTGTAGCC 59.044 45.455 0.00 0.00 37.07 3.93
4369 4836 2.956333 GTGTTCCTTTTTGGTGTAGCCT 59.044 45.455 0.00 0.00 38.35 4.58
4370 4837 2.955660 TGTTCCTTTTTGGTGTAGCCTG 59.044 45.455 0.00 0.00 38.35 4.85
4371 4838 1.616159 TCCTTTTTGGTGTAGCCTGC 58.384 50.000 0.00 0.00 38.35 4.85
4372 4839 1.144913 TCCTTTTTGGTGTAGCCTGCT 59.855 47.619 0.00 0.00 38.35 4.24
4373 4840 1.963515 CCTTTTTGGTGTAGCCTGCTT 59.036 47.619 0.00 0.00 38.35 3.91
4374 4841 2.288395 CCTTTTTGGTGTAGCCTGCTTG 60.288 50.000 0.00 0.00 38.35 4.01
4375 4842 1.327303 TTTTGGTGTAGCCTGCTTGG 58.673 50.000 0.00 0.00 38.35 3.61
4376 4843 0.184933 TTTGGTGTAGCCTGCTTGGT 59.815 50.000 0.00 0.00 38.35 3.67
4377 4844 1.060729 TTGGTGTAGCCTGCTTGGTA 58.939 50.000 0.00 0.00 38.35 3.25
4378 4845 1.285280 TGGTGTAGCCTGCTTGGTAT 58.715 50.000 0.00 0.00 38.35 2.73
4379 4846 1.065491 TGGTGTAGCCTGCTTGGTATG 60.065 52.381 0.00 0.00 38.35 2.39
4380 4847 1.209504 GGTGTAGCCTGCTTGGTATGA 59.790 52.381 0.00 0.00 38.35 2.15
4381 4848 2.555199 GTGTAGCCTGCTTGGTATGAG 58.445 52.381 0.00 0.00 38.35 2.90
4382 4849 2.093447 GTGTAGCCTGCTTGGTATGAGT 60.093 50.000 0.00 0.00 38.35 3.41
4383 4850 3.132289 GTGTAGCCTGCTTGGTATGAGTA 59.868 47.826 0.00 0.00 38.35 2.59
4384 4851 2.990066 AGCCTGCTTGGTATGAGTAC 57.010 50.000 0.00 0.00 38.35 2.73
4385 4852 1.137086 AGCCTGCTTGGTATGAGTACG 59.863 52.381 0.00 0.00 38.35 3.67
4386 4853 1.134788 GCCTGCTTGGTATGAGTACGT 60.135 52.381 0.00 0.00 38.35 3.57
4387 4854 2.100252 GCCTGCTTGGTATGAGTACGTA 59.900 50.000 0.00 0.00 38.35 3.57
4388 4855 3.243771 GCCTGCTTGGTATGAGTACGTAT 60.244 47.826 0.00 0.00 38.35 3.06
4389 4856 4.022589 GCCTGCTTGGTATGAGTACGTATA 60.023 45.833 0.00 0.00 38.35 1.47
4390 4857 5.458891 CCTGCTTGGTATGAGTACGTATAC 58.541 45.833 0.00 11.74 0.00 1.47
4391 4858 5.443185 TGCTTGGTATGAGTACGTATACC 57.557 43.478 23.69 23.69 45.80 2.73
4392 4859 5.135383 TGCTTGGTATGAGTACGTATACCT 58.865 41.667 27.27 5.51 45.79 3.08
4393 4860 5.595542 TGCTTGGTATGAGTACGTATACCTT 59.404 40.000 27.27 6.26 45.79 3.50
4394 4861 5.919141 GCTTGGTATGAGTACGTATACCTTG 59.081 44.000 27.27 22.38 45.79 3.61
4395 4862 6.460676 GCTTGGTATGAGTACGTATACCTTGT 60.461 42.308 27.27 2.40 45.79 3.16
4396 4863 7.408756 TTGGTATGAGTACGTATACCTTGTT 57.591 36.000 27.27 0.00 45.79 2.83
4397 4864 8.518430 TTGGTATGAGTACGTATACCTTGTTA 57.482 34.615 27.27 14.07 45.79 2.41
4398 4865 8.696043 TGGTATGAGTACGTATACCTTGTTAT 57.304 34.615 27.27 2.73 45.79 1.89
4399 4866 9.135189 TGGTATGAGTACGTATACCTTGTTATT 57.865 33.333 27.27 0.00 45.79 1.40
4400 4867 9.617975 GGTATGAGTACGTATACCTTGTTATTC 57.382 37.037 23.40 0.00 43.46 1.75
4401 4868 9.617975 GTATGAGTACGTATACCTTGTTATTCC 57.382 37.037 0.00 0.00 30.88 3.01
4402 4869 7.886629 TGAGTACGTATACCTTGTTATTCCT 57.113 36.000 0.00 0.00 30.88 3.36
4403 4870 8.297470 TGAGTACGTATACCTTGTTATTCCTT 57.703 34.615 0.00 0.00 30.88 3.36
4404 4871 8.192774 TGAGTACGTATACCTTGTTATTCCTTG 58.807 37.037 0.00 0.00 30.88 3.61
4405 4872 6.982724 AGTACGTATACCTTGTTATTCCTTGC 59.017 38.462 0.00 0.00 30.88 4.01
4406 4873 5.736813 ACGTATACCTTGTTATTCCTTGCA 58.263 37.500 0.00 0.00 0.00 4.08
4407 4874 5.815740 ACGTATACCTTGTTATTCCTTGCAG 59.184 40.000 0.00 0.00 0.00 4.41
4408 4875 5.236478 CGTATACCTTGTTATTCCTTGCAGG 59.764 44.000 0.00 0.00 36.46 4.85
4409 4876 3.525800 ACCTTGTTATTCCTTGCAGGT 57.474 42.857 0.00 0.00 36.53 4.00
4410 4877 3.421844 ACCTTGTTATTCCTTGCAGGTC 58.578 45.455 0.00 0.00 36.53 3.85
4411 4878 3.181434 ACCTTGTTATTCCTTGCAGGTCA 60.181 43.478 0.00 0.00 36.53 4.02
4412 4879 3.826157 CCTTGTTATTCCTTGCAGGTCAA 59.174 43.478 0.00 0.00 36.53 3.18
4413 4880 4.280677 CCTTGTTATTCCTTGCAGGTCAAA 59.719 41.667 0.00 0.00 36.53 2.69
4414 4881 5.221422 CCTTGTTATTCCTTGCAGGTCAAAA 60.221 40.000 0.00 0.00 36.53 2.44
4415 4882 5.860941 TGTTATTCCTTGCAGGTCAAAAA 57.139 34.783 0.00 0.00 36.53 1.94
4488 4955 8.814038 ATGATCTAGTCCTAAACTTGCAAAAT 57.186 30.769 0.00 0.00 39.55 1.82
4518 4985 2.738743 CCATACCCCAACTTGCATCTT 58.261 47.619 0.00 0.00 0.00 2.40
4534 5001 8.796475 ACTTGCATCTTATGTGATGTTTTAGTT 58.204 29.630 10.19 0.00 44.02 2.24
4535 5002 9.630098 CTTGCATCTTATGTGATGTTTTAGTTT 57.370 29.630 10.19 0.00 44.02 2.66
4603 5081 1.280457 TTTTGCACAAAACCCCCTGT 58.720 45.000 4.47 0.00 35.57 4.00
4683 5161 0.389948 GCGGGGAGCGTCCATATTAG 60.390 60.000 6.41 0.00 38.64 1.73
4783 5261 5.335661 GCCATGTTAACCAGTAAACTTCCAG 60.336 44.000 2.48 0.00 0.00 3.86
4809 5287 2.334946 GCAGCATTGGTCGAAGGCA 61.335 57.895 6.99 0.00 44.06 4.75
4944 5434 2.799562 CGATGAAACATCGCTCCAGCTA 60.800 50.000 18.40 0.00 39.32 3.32
4955 5445 1.000717 GCTCCAGCTACCGATCTCTTC 60.001 57.143 0.00 0.00 38.21 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 0.397254 CTACGACACCTCCCTCCCAT 60.397 60.000 0.00 0.00 0.00 4.00
124 148 4.340666 TGAAAATAAAGCAGAACACAGGCA 59.659 37.500 0.00 0.00 0.00 4.75
125 149 4.870363 TGAAAATAAAGCAGAACACAGGC 58.130 39.130 0.00 0.00 0.00 4.85
126 150 5.010012 ACCTGAAAATAAAGCAGAACACAGG 59.990 40.000 0.00 0.00 44.25 4.00
127 151 5.916883 CACCTGAAAATAAAGCAGAACACAG 59.083 40.000 0.00 0.00 0.00 3.66
128 152 5.221224 CCACCTGAAAATAAAGCAGAACACA 60.221 40.000 0.00 0.00 0.00 3.72
129 153 5.221244 ACCACCTGAAAATAAAGCAGAACAC 60.221 40.000 0.00 0.00 0.00 3.32
130 154 4.892934 ACCACCTGAAAATAAAGCAGAACA 59.107 37.500 0.00 0.00 0.00 3.18
131 155 5.453567 ACCACCTGAAAATAAAGCAGAAC 57.546 39.130 0.00 0.00 0.00 3.01
132 156 7.589958 TTTACCACCTGAAAATAAAGCAGAA 57.410 32.000 0.00 0.00 0.00 3.02
133 157 7.430441 GTTTTACCACCTGAAAATAAAGCAGA 58.570 34.615 0.00 0.00 0.00 4.26
134 158 6.362283 CGTTTTACCACCTGAAAATAAAGCAG 59.638 38.462 0.00 0.00 0.00 4.24
135 159 6.039493 TCGTTTTACCACCTGAAAATAAAGCA 59.961 34.615 0.00 0.00 0.00 3.91
136 160 6.440436 TCGTTTTACCACCTGAAAATAAAGC 58.560 36.000 0.00 0.00 0.00 3.51
137 161 7.112426 CGTTCGTTTTACCACCTGAAAATAAAG 59.888 37.037 0.00 0.00 0.00 1.85
138 162 6.911511 CGTTCGTTTTACCACCTGAAAATAAA 59.088 34.615 0.00 0.00 0.00 1.40
139 163 6.428799 CGTTCGTTTTACCACCTGAAAATAA 58.571 36.000 0.00 0.00 0.00 1.40
140 164 5.049543 CCGTTCGTTTTACCACCTGAAAATA 60.050 40.000 0.00 0.00 0.00 1.40
141 165 4.261280 CCGTTCGTTTTACCACCTGAAAAT 60.261 41.667 0.00 0.00 0.00 1.82
142 166 3.065095 CCGTTCGTTTTACCACCTGAAAA 59.935 43.478 0.00 0.00 0.00 2.29
143 167 2.613133 CCGTTCGTTTTACCACCTGAAA 59.387 45.455 0.00 0.00 0.00 2.69
144 168 2.211806 CCGTTCGTTTTACCACCTGAA 58.788 47.619 0.00 0.00 0.00 3.02
145 169 1.540797 CCCGTTCGTTTTACCACCTGA 60.541 52.381 0.00 0.00 0.00 3.86
146 170 0.869730 CCCGTTCGTTTTACCACCTG 59.130 55.000 0.00 0.00 0.00 4.00
167 191 1.671166 CCATCCATGCCATGCCATG 59.329 57.895 9.68 9.68 41.71 3.66
266 319 1.268743 GCAACAGTTCACTGAAGTGCC 60.269 52.381 21.77 10.26 44.18 5.01
298 357 3.787785 AGTTCGTTCATACACACACACA 58.212 40.909 0.00 0.00 0.00 3.72
302 361 4.271533 GGAACAAGTTCGTTCATACACACA 59.728 41.667 15.43 0.00 45.82 3.72
309 368 7.193595 CAGTTTAAAGGAACAAGTTCGTTCAT 58.806 34.615 17.83 8.80 45.82 2.57
409 576 2.592993 CCCTTCCAACGGGAGCTCA 61.593 63.158 17.19 0.00 46.01 4.26
430 598 3.467803 CTCTCCGAACACCACTTCTTTT 58.532 45.455 0.00 0.00 0.00 2.27
431 599 2.807108 GCTCTCCGAACACCACTTCTTT 60.807 50.000 0.00 0.00 0.00 2.52
432 600 1.270358 GCTCTCCGAACACCACTTCTT 60.270 52.381 0.00 0.00 0.00 2.52
434 602 0.033504 TGCTCTCCGAACACCACTTC 59.966 55.000 0.00 0.00 0.00 3.01
438 619 0.249868 CTGTTGCTCTCCGAACACCA 60.250 55.000 0.00 0.00 0.00 4.17
453 634 5.415701 GTCAACATCTCTCTCTCTCTCTGTT 59.584 44.000 0.00 0.00 0.00 3.16
454 635 4.943705 GTCAACATCTCTCTCTCTCTCTGT 59.056 45.833 0.00 0.00 0.00 3.41
455 636 5.065602 CAGTCAACATCTCTCTCTCTCTCTG 59.934 48.000 0.00 0.00 0.00 3.35
580 817 3.065233 CGTTGTACTGCCACCGTATACTA 59.935 47.826 0.56 0.00 0.00 1.82
581 818 2.159338 CGTTGTACTGCCACCGTATACT 60.159 50.000 0.56 0.00 0.00 2.12
582 819 2.187707 CGTTGTACTGCCACCGTATAC 58.812 52.381 0.00 0.00 0.00 1.47
588 825 0.032952 TCAGACGTTGTACTGCCACC 59.967 55.000 0.00 0.00 34.57 4.61
601 842 6.355397 AGCATGATTTATTGAGTTCAGACG 57.645 37.500 0.00 0.00 0.00 4.18
735 980 1.336131 TGCATGGCTAGAGCTAGAGG 58.664 55.000 8.65 0.00 41.70 3.69
741 986 0.107017 TTCCCTTGCATGGCTAGAGC 60.107 55.000 13.15 0.00 33.57 4.09
786 1034 2.375509 CTCTACCCCTTGGTTTCTTGGT 59.624 50.000 0.00 0.00 44.75 3.67
787 1035 2.880167 GCTCTACCCCTTGGTTTCTTGG 60.880 54.545 0.00 0.00 44.75 3.61
823 1079 2.829384 GGTGGTGGTGGGAGCTTGA 61.829 63.158 0.00 0.00 0.00 3.02
854 1111 0.759346 AAGACAAGACGGCTGGAGTT 59.241 50.000 0.00 0.00 0.00 3.01
864 1121 2.297701 TGGAGTGGCAAAAGACAAGAC 58.702 47.619 0.00 0.00 0.00 3.01
880 1137 3.870299 GCCCTTGTTCTTCTACCTTGGAG 60.870 52.174 0.00 0.00 0.00 3.86
914 1182 1.290732 CTCCTCCTCCTCCTTTCTCCT 59.709 57.143 0.00 0.00 0.00 3.69
932 1200 1.152546 GCTCCTCCTCCTCCTCCTC 60.153 68.421 0.00 0.00 0.00 3.71
941 1209 2.065906 GATCACCGTCGCTCCTCCTC 62.066 65.000 0.00 0.00 0.00 3.71
942 1210 2.043852 ATCACCGTCGCTCCTCCT 60.044 61.111 0.00 0.00 0.00 3.69
943 1211 2.413765 GATCACCGTCGCTCCTCC 59.586 66.667 0.00 0.00 0.00 4.30
944 1212 1.989966 TTCGATCACCGTCGCTCCTC 61.990 60.000 0.00 0.00 41.22 3.71
945 1213 1.592400 TTTCGATCACCGTCGCTCCT 61.592 55.000 0.00 0.00 41.22 3.69
946 1214 1.140407 CTTTCGATCACCGTCGCTCC 61.140 60.000 0.00 0.00 41.22 4.70
947 1215 1.140407 CCTTTCGATCACCGTCGCTC 61.140 60.000 0.00 0.00 41.22 5.03
948 1216 1.153823 CCTTTCGATCACCGTCGCT 60.154 57.895 0.00 0.00 41.22 4.93
949 1217 0.734942 TTCCTTTCGATCACCGTCGC 60.735 55.000 0.00 0.00 41.22 5.19
950 1218 1.269166 CTTCCTTTCGATCACCGTCG 58.731 55.000 0.00 0.00 42.74 5.12
987 1255 1.692042 CCCCATCTCTGGTCTGGCT 60.692 63.158 0.00 0.00 41.37 4.75
1006 1274 2.684843 CCTGCTTCTTGACGCTGCC 61.685 63.158 0.00 0.00 0.00 4.85
1013 1281 0.603707 CACGGCTTCCTGCTTCTTGA 60.604 55.000 0.00 0.00 42.39 3.02
1087 1355 1.860944 ATGGCCTGCAGGAAGCTTCT 61.861 55.000 37.21 9.62 45.94 2.85
1089 1357 0.106819 CTATGGCCTGCAGGAAGCTT 60.107 55.000 37.21 16.89 45.94 3.74
1143 1411 5.146010 TCAGGAAGAAGAAGAAGAAGAGC 57.854 43.478 0.00 0.00 0.00 4.09
1189 1463 5.841957 ACAACAAGAAGAAGCAGAACAAT 57.158 34.783 0.00 0.00 0.00 2.71
1193 1467 3.696051 AGCAACAACAAGAAGAAGCAGAA 59.304 39.130 0.00 0.00 0.00 3.02
1196 1470 3.282021 AGAGCAACAACAAGAAGAAGCA 58.718 40.909 0.00 0.00 0.00 3.91
1197 1471 3.978718 AGAGCAACAACAAGAAGAAGC 57.021 42.857 0.00 0.00 0.00 3.86
1198 1472 4.966366 CGAAAGAGCAACAACAAGAAGAAG 59.034 41.667 0.00 0.00 0.00 2.85
1200 1474 3.312421 CCGAAAGAGCAACAACAAGAAGA 59.688 43.478 0.00 0.00 0.00 2.87
1207 1481 3.145212 ACAAACCGAAAGAGCAACAAC 57.855 42.857 0.00 0.00 0.00 3.32
1210 1484 4.028852 AGAAACAAACCGAAAGAGCAAC 57.971 40.909 0.00 0.00 0.00 4.17
1213 1487 2.031069 GGGAGAAACAAACCGAAAGAGC 60.031 50.000 0.00 0.00 0.00 4.09
1214 1488 2.552743 GGGGAGAAACAAACCGAAAGAG 59.447 50.000 0.00 0.00 0.00 2.85
1252 1528 1.265905 GACAACCGGTGCAAAACTAGG 59.734 52.381 8.52 0.00 34.23 3.02
1255 1531 0.738389 CAGACAACCGGTGCAAAACT 59.262 50.000 8.52 0.00 0.00 2.66
1280 1556 4.794169 CAAGCATGGTACCAAGTTACAAC 58.206 43.478 20.76 0.06 0.00 3.32
1286 1562 3.652057 ATAGCAAGCATGGTACCAAGT 57.348 42.857 20.76 0.00 41.94 3.16
1287 1563 4.989279 AAATAGCAAGCATGGTACCAAG 57.011 40.909 20.76 16.53 41.94 3.61
1289 1565 4.085733 ACAAAATAGCAAGCATGGTACCA 58.914 39.130 18.99 18.99 41.94 3.25
1290 1566 4.718940 ACAAAATAGCAAGCATGGTACC 57.281 40.909 4.43 4.43 41.94 3.34
1291 1567 5.708948 TCAACAAAATAGCAAGCATGGTAC 58.291 37.500 2.54 0.00 41.94 3.34
1293 1569 4.870123 TCAACAAAATAGCAAGCATGGT 57.130 36.364 0.00 0.00 41.03 3.55
1294 1570 7.037438 ACTAATCAACAAAATAGCAAGCATGG 58.963 34.615 0.00 0.00 0.00 3.66
1295 1571 8.470040 AACTAATCAACAAAATAGCAAGCATG 57.530 30.769 0.00 0.00 0.00 4.06
1296 1572 8.526147 AGAACTAATCAACAAAATAGCAAGCAT 58.474 29.630 0.00 0.00 0.00 3.79
1297 1573 7.809331 CAGAACTAATCAACAAAATAGCAAGCA 59.191 33.333 0.00 0.00 0.00 3.91
1298 1574 7.274250 CCAGAACTAATCAACAAAATAGCAAGC 59.726 37.037 0.00 0.00 0.00 4.01
1299 1575 7.274250 GCCAGAACTAATCAACAAAATAGCAAG 59.726 37.037 0.00 0.00 0.00 4.01
1300 1576 7.090173 GCCAGAACTAATCAACAAAATAGCAA 58.910 34.615 0.00 0.00 0.00 3.91
1301 1577 6.208402 TGCCAGAACTAATCAACAAAATAGCA 59.792 34.615 0.00 0.00 0.00 3.49
1302 1578 6.620678 TGCCAGAACTAATCAACAAAATAGC 58.379 36.000 0.00 0.00 0.00 2.97
1303 1579 8.461222 TCATGCCAGAACTAATCAACAAAATAG 58.539 33.333 0.00 0.00 0.00 1.73
1304 1580 8.347004 TCATGCCAGAACTAATCAACAAAATA 57.653 30.769 0.00 0.00 0.00 1.40
1305 1581 7.230849 TCATGCCAGAACTAATCAACAAAAT 57.769 32.000 0.00 0.00 0.00 1.82
1306 1582 6.647334 TCATGCCAGAACTAATCAACAAAA 57.353 33.333 0.00 0.00 0.00 2.44
1307 1583 6.647334 TTCATGCCAGAACTAATCAACAAA 57.353 33.333 0.00 0.00 0.00 2.83
1308 1584 6.660521 AGATTCATGCCAGAACTAATCAACAA 59.339 34.615 0.00 0.00 0.00 2.83
1309 1585 6.182627 AGATTCATGCCAGAACTAATCAACA 58.817 36.000 0.00 0.00 0.00 3.33
1310 1586 6.690194 AGATTCATGCCAGAACTAATCAAC 57.310 37.500 0.00 0.00 0.00 3.18
1311 1587 7.568349 ACTAGATTCATGCCAGAACTAATCAA 58.432 34.615 0.00 0.00 0.00 2.57
1312 1588 7.129457 ACTAGATTCATGCCAGAACTAATCA 57.871 36.000 0.00 0.00 0.00 2.57
1313 1589 8.443953 AAACTAGATTCATGCCAGAACTAATC 57.556 34.615 0.00 0.00 0.00 1.75
1314 1590 8.270744 AGAAACTAGATTCATGCCAGAACTAAT 58.729 33.333 14.42 0.00 0.00 1.73
1315 1591 7.624549 AGAAACTAGATTCATGCCAGAACTAA 58.375 34.615 14.42 0.00 0.00 2.24
1316 1592 7.187824 AGAAACTAGATTCATGCCAGAACTA 57.812 36.000 14.42 0.00 0.00 2.24
1317 1593 6.059787 AGAAACTAGATTCATGCCAGAACT 57.940 37.500 14.42 0.00 0.00 3.01
1318 1594 6.549952 CAAGAAACTAGATTCATGCCAGAAC 58.450 40.000 14.42 0.00 0.00 3.01
1319 1595 5.124457 GCAAGAAACTAGATTCATGCCAGAA 59.876 40.000 24.32 0.00 44.19 3.02
1320 1596 4.637534 GCAAGAAACTAGATTCATGCCAGA 59.362 41.667 24.32 0.00 44.19 3.86
1321 1597 4.918037 GCAAGAAACTAGATTCATGCCAG 58.082 43.478 24.32 6.68 44.19 4.85
1322 1598 4.970662 GCAAGAAACTAGATTCATGCCA 57.029 40.909 24.32 0.00 44.19 4.92
1325 1601 6.318144 AGACATGGCAAGAAACTAGATTCATG 59.682 38.462 14.42 13.24 36.51 3.07
1359 1635 0.242017 CTGGCTAGTGCAAAACAGGC 59.758 55.000 0.00 0.00 41.91 4.85
1361 1637 2.094894 CGATCTGGCTAGTGCAAAACAG 59.905 50.000 0.00 0.00 41.91 3.16
1362 1638 2.076100 CGATCTGGCTAGTGCAAAACA 58.924 47.619 0.00 0.00 41.91 2.83
1387 1663 2.348998 CCAAAGGACAGCTCGGCT 59.651 61.111 0.00 0.00 40.77 5.52
1388 1664 2.747855 CCCAAAGGACAGCTCGGC 60.748 66.667 0.00 0.00 33.47 5.54
1389 1665 1.073199 AACCCAAAGGACAGCTCGG 59.927 57.895 0.00 0.00 36.73 4.63
1391 1667 1.609072 GAACAACCCAAAGGACAGCTC 59.391 52.381 0.00 0.00 36.73 4.09
1392 1668 1.692411 GAACAACCCAAAGGACAGCT 58.308 50.000 0.00 0.00 36.73 4.24
1393 1669 0.310854 CGAACAACCCAAAGGACAGC 59.689 55.000 0.00 0.00 36.73 4.40
1397 1673 1.202722 GGAGACGAACAACCCAAAGGA 60.203 52.381 0.00 0.00 36.73 3.36
1398 1674 1.202770 AGGAGACGAACAACCCAAAGG 60.203 52.381 0.00 0.00 40.04 3.11
1399 1675 2.256117 AGGAGACGAACAACCCAAAG 57.744 50.000 0.00 0.00 0.00 2.77
1400 1676 2.721425 AAGGAGACGAACAACCCAAA 57.279 45.000 0.00 0.00 0.00 3.28
1401 1677 2.721425 AAAGGAGACGAACAACCCAA 57.279 45.000 0.00 0.00 0.00 4.12
1411 1687 6.258947 GGATCCAAAGAGATTAAAAGGAGACG 59.741 42.308 6.95 0.00 0.00 4.18
1431 1707 4.978388 AGGCCCAGGATATAATTAGGATCC 59.022 45.833 16.46 16.46 39.65 3.36
1434 1710 5.170198 ACAAGGCCCAGGATATAATTAGGA 58.830 41.667 0.00 0.00 0.00 2.94
1435 1711 5.520748 ACAAGGCCCAGGATATAATTAGG 57.479 43.478 0.00 0.00 0.00 2.69
1442 1723 5.776358 TGAAATTAACAAGGCCCAGGATAT 58.224 37.500 0.00 0.00 0.00 1.63
1444 1725 4.026052 CTGAAATTAACAAGGCCCAGGAT 58.974 43.478 0.00 0.00 0.00 3.24
1445 1726 3.075283 TCTGAAATTAACAAGGCCCAGGA 59.925 43.478 0.00 0.00 0.00 3.86
1609 1918 4.455190 AGAAGTCCGTCTTGTACTAGTGTC 59.545 45.833 5.39 0.00 36.40 3.67
1611 1920 4.142643 GGAGAAGTCCGTCTTGTACTAGTG 60.143 50.000 5.39 0.00 36.40 2.74
1613 1922 3.377798 GGGAGAAGTCCGTCTTGTACTAG 59.622 52.174 0.00 0.00 45.05 2.57
1616 1925 1.204231 GGGGAGAAGTCCGTCTTGTAC 59.796 57.143 0.00 0.00 45.05 2.90
1617 1926 1.553706 GGGGAGAAGTCCGTCTTGTA 58.446 55.000 0.00 0.00 45.05 2.41
1618 1927 1.533469 CGGGGAGAAGTCCGTCTTGT 61.533 60.000 0.00 0.00 45.05 3.16
1619 1928 1.215647 CGGGGAGAAGTCCGTCTTG 59.784 63.158 0.00 0.00 45.05 3.02
1625 1936 1.520494 GAACAAACGGGGAGAAGTCC 58.480 55.000 0.00 0.00 43.05 3.85
1726 2037 6.917533 AGAAACAGTAAAGAAAGATGCATGG 58.082 36.000 2.46 0.00 0.00 3.66
1772 2083 5.578157 AAAGACTTCCTAGGCTGGTTAAA 57.422 39.130 2.96 0.00 39.49 1.52
1812 2123 0.409876 AAAAAGGGAAGGGGAGAGCC 59.590 55.000 0.00 0.00 0.00 4.70
1813 2124 1.075536 TGAAAAAGGGAAGGGGAGAGC 59.924 52.381 0.00 0.00 0.00 4.09
1814 2125 3.746792 ATGAAAAAGGGAAGGGGAGAG 57.253 47.619 0.00 0.00 0.00 3.20
1815 2126 5.608798 TTAATGAAAAAGGGAAGGGGAGA 57.391 39.130 0.00 0.00 0.00 3.71
1816 2127 6.680148 TTTTAATGAAAAAGGGAAGGGGAG 57.320 37.500 0.00 0.00 32.05 4.30
1838 2149 2.650322 TGACTTCCGAGGCTTGTTTTT 58.350 42.857 0.12 0.00 0.00 1.94
1839 2150 2.341846 TGACTTCCGAGGCTTGTTTT 57.658 45.000 0.12 0.00 0.00 2.43
1840 2151 2.568623 ATGACTTCCGAGGCTTGTTT 57.431 45.000 0.12 0.00 0.00 2.83
1841 2152 2.093447 CCTATGACTTCCGAGGCTTGTT 60.093 50.000 0.12 0.00 0.00 2.83
1842 2153 1.482593 CCTATGACTTCCGAGGCTTGT 59.517 52.381 0.12 0.00 0.00 3.16
1843 2154 1.482593 ACCTATGACTTCCGAGGCTTG 59.517 52.381 0.00 0.00 31.81 4.01
1844 2155 1.867363 ACCTATGACTTCCGAGGCTT 58.133 50.000 0.00 0.00 31.81 4.35
1845 2156 1.867363 AACCTATGACTTCCGAGGCT 58.133 50.000 0.00 0.00 31.81 4.58
1846 2157 2.693267 AAACCTATGACTTCCGAGGC 57.307 50.000 0.00 0.00 31.81 4.70
1847 2158 5.340439 ACTAAAACCTATGACTTCCGAGG 57.660 43.478 0.00 0.00 35.05 4.63
1868 2179 2.374170 TCCCCAAGAAACAAGGAGGTAC 59.626 50.000 0.00 0.00 0.00 3.34
1869 2180 2.708759 TCCCCAAGAAACAAGGAGGTA 58.291 47.619 0.00 0.00 0.00 3.08
1870 2181 1.529744 TCCCCAAGAAACAAGGAGGT 58.470 50.000 0.00 0.00 0.00 3.85
1898 2209 9.010029 ACGAATTTATAACAATAATAGGGCCTG 57.990 33.333 18.53 0.53 0.00 4.85
2003 2318 6.744537 CGTGGTGTAACATTCTACAGTAGTAC 59.255 42.308 7.50 3.40 39.98 2.73
2006 2321 5.946298 TCGTGGTGTAACATTCTACAGTAG 58.054 41.667 0.47 0.47 39.98 2.57
2040 2355 9.515020 TTTAATTAAAGAAAGTGAACACTGCTG 57.485 29.630 6.54 0.00 41.58 4.41
2070 2388 0.103937 CCTTGAGGCGATCTGGTCTC 59.896 60.000 0.00 0.00 39.12 3.36
2074 2392 0.179089 CAGACCTTGAGGCGATCTGG 60.179 60.000 7.80 0.00 39.32 3.86
2142 2460 2.488937 TGCCAAGTGTGATAAGCATGTG 59.511 45.455 0.00 0.00 0.00 3.21
2143 2461 2.794103 TGCCAAGTGTGATAAGCATGT 58.206 42.857 0.00 0.00 0.00 3.21
2159 2477 1.943968 GCGATGAGTGGTTAGTTGCCA 60.944 52.381 0.00 0.00 0.00 4.92
2240 2572 3.892284 TCTAAAGTGTGCACAGGGAAAA 58.108 40.909 22.40 1.98 0.00 2.29
2266 2598 3.181486 GGTTTGGCTTTCCATTAGCTAGC 60.181 47.826 6.62 6.62 43.05 3.42
2267 2599 3.381590 GGGTTTGGCTTTCCATTAGCTAG 59.618 47.826 0.00 0.00 43.05 3.42
2268 2600 3.361786 GGGTTTGGCTTTCCATTAGCTA 58.638 45.455 0.00 0.00 43.05 3.32
2269 2601 2.179427 GGGTTTGGCTTTCCATTAGCT 58.821 47.619 0.00 0.00 43.05 3.32
2369 2705 2.353610 GCACATGAAGGGCTTGGGG 61.354 63.158 0.00 0.00 45.63 4.96
2370 2706 3.291611 GCACATGAAGGGCTTGGG 58.708 61.111 0.00 0.00 45.63 4.12
2444 2787 8.825667 AAAGCTTTGTCTTTTTAACTTGAACA 57.174 26.923 11.80 0.00 32.78 3.18
2474 2818 3.118445 GCTCTCTTGTCAAGATTAGGCCT 60.118 47.826 15.60 11.78 36.82 5.19
2566 2911 3.145551 GGCCTCCTTGCATGCCTG 61.146 66.667 16.68 7.67 40.77 4.85
2630 2981 9.208022 GCTTGCATGTAGTAGTAATCATCAATA 57.792 33.333 1.14 0.00 0.00 1.90
2647 2998 1.687840 ATGGCCATGGCTTGCATGT 60.688 52.632 34.70 9.07 41.60 3.21
2667 3018 2.039613 GGCCCTCCATTATTCTCCTCTG 59.960 54.545 0.00 0.00 0.00 3.35
2711 3065 3.441290 CTGGAAGCAGCAGCAGCC 61.441 66.667 6.10 4.53 45.49 4.85
2734 3091 0.606401 CTCCAAACATGCCACGGTCT 60.606 55.000 0.00 0.00 0.00 3.85
2743 3100 2.426024 CCAGATCCTTGCTCCAAACATG 59.574 50.000 0.00 0.00 0.00 3.21
2747 3104 0.677731 CGCCAGATCCTTGCTCCAAA 60.678 55.000 0.00 0.00 0.00 3.28
2762 3119 3.259876 AGATGTGTACCTTAAAGTCGCCA 59.740 43.478 0.00 0.00 0.00 5.69
2779 3136 1.815003 GGCTACTTTTGCAGCAGATGT 59.185 47.619 9.17 9.17 40.52 3.06
2803 3160 8.421249 TTCAGATCAACTTTCCCAATGTTTAT 57.579 30.769 0.00 0.00 0.00 1.40
2838 3195 9.748708 TGTGAAATAATTGAAGACAAAAGAAGG 57.251 29.630 0.00 0.00 39.54 3.46
2864 3221 2.870411 GAGACACGTAAGCAAAAGGTGT 59.130 45.455 10.07 10.07 45.68 4.16
2868 3225 8.869897 TGATAATAAGAGACACGTAAGCAAAAG 58.130 33.333 0.00 0.00 45.62 2.27
2870 3227 8.033038 AGTGATAATAAGAGACACGTAAGCAAA 58.967 33.333 0.00 0.00 45.62 3.68
2877 3234 4.798907 CGCAAGTGATAATAAGAGACACGT 59.201 41.667 0.00 0.00 36.71 4.49
2879 3236 4.566759 TGCGCAAGTGATAATAAGAGACAC 59.433 41.667 8.16 0.00 41.68 3.67
2881 3238 4.317418 CGTGCGCAAGTGATAATAAGAGAC 60.317 45.833 14.00 0.00 41.68 3.36
2884 3241 3.517602 ACGTGCGCAAGTGATAATAAGA 58.482 40.909 27.96 0.00 41.68 2.10
2893 3250 1.708158 CAATTTGTACGTGCGCAAGTG 59.292 47.619 34.26 19.86 41.68 3.16
2923 3281 5.508825 CGTAGGAGCTCAGCTAAATCAGATT 60.509 44.000 17.19 0.00 39.88 2.40
2968 3337 0.681175 AAACTCTGGTTGGCCAATGC 59.319 50.000 23.66 9.75 45.51 3.56
3029 3398 2.498481 CAGCATTGTGGATTGGATGGTT 59.502 45.455 0.00 0.00 0.00 3.67
3052 3424 1.380785 CCCCACAAGATGCAGGCAT 60.381 57.895 6.44 6.44 39.69 4.40
3053 3425 2.036098 CCCCACAAGATGCAGGCA 59.964 61.111 0.00 0.00 0.00 4.75
3054 3426 3.455469 GCCCCACAAGATGCAGGC 61.455 66.667 0.00 0.00 38.58 4.85
3055 3427 1.304713 AAGCCCCACAAGATGCAGG 60.305 57.895 0.00 0.00 0.00 4.85
3069 3441 2.043227 AGCTCCCTCATAGTACAAGCC 58.957 52.381 0.00 0.00 0.00 4.35
3070 3442 2.695666 TCAGCTCCCTCATAGTACAAGC 59.304 50.000 0.00 0.00 0.00 4.01
3071 3443 5.344743 TTTCAGCTCCCTCATAGTACAAG 57.655 43.478 0.00 0.00 0.00 3.16
3091 3466 2.684881 GCATCGGTCAATCAGGACATTT 59.315 45.455 0.00 0.00 39.59 2.32
3156 3531 0.452184 AGTGTCGTCTACGGAGCATG 59.548 55.000 2.24 0.00 40.29 4.06
3157 3532 1.132643 GAAGTGTCGTCTACGGAGCAT 59.867 52.381 2.24 0.00 40.29 3.79
3158 3533 0.520404 GAAGTGTCGTCTACGGAGCA 59.480 55.000 2.24 0.00 40.29 4.26
3159 3534 0.520404 TGAAGTGTCGTCTACGGAGC 59.480 55.000 2.24 0.00 40.29 4.70
3160 3535 3.489180 AATGAAGTGTCGTCTACGGAG 57.511 47.619 2.24 0.00 40.29 4.63
3161 3536 3.928727 AAATGAAGTGTCGTCTACGGA 57.071 42.857 2.24 0.00 40.29 4.69
3162 3537 5.100259 ACATAAATGAAGTGTCGTCTACGG 58.900 41.667 2.24 0.00 40.29 4.02
3163 3538 6.965500 ACTACATAAATGAAGTGTCGTCTACG 59.035 38.462 0.00 0.00 41.45 3.51
3164 3539 8.584600 CAACTACATAAATGAAGTGTCGTCTAC 58.415 37.037 0.00 0.00 0.00 2.59
3165 3540 7.274904 GCAACTACATAAATGAAGTGTCGTCTA 59.725 37.037 0.00 0.00 0.00 2.59
3166 3541 6.090898 GCAACTACATAAATGAAGTGTCGTCT 59.909 38.462 0.00 0.00 0.00 4.18
3167 3542 6.090898 AGCAACTACATAAATGAAGTGTCGTC 59.909 38.462 0.00 0.00 0.00 4.20
3168 3543 5.932303 AGCAACTACATAAATGAAGTGTCGT 59.068 36.000 0.00 0.00 0.00 4.34
3169 3544 6.243551 CAGCAACTACATAAATGAAGTGTCG 58.756 40.000 0.00 0.00 0.00 4.35
3170 3545 6.149474 ACCAGCAACTACATAAATGAAGTGTC 59.851 38.462 0.00 0.00 0.00 3.67
3171 3546 6.003950 ACCAGCAACTACATAAATGAAGTGT 58.996 36.000 0.00 0.00 0.00 3.55
3172 3547 6.500684 ACCAGCAACTACATAAATGAAGTG 57.499 37.500 0.00 0.00 0.00 3.16
3173 3548 7.165485 TGTACCAGCAACTACATAAATGAAGT 58.835 34.615 0.00 0.00 0.00 3.01
3174 3549 7.609760 TGTACCAGCAACTACATAAATGAAG 57.390 36.000 0.00 0.00 0.00 3.02
3175 3550 7.609918 ACATGTACCAGCAACTACATAAATGAA 59.390 33.333 0.00 0.00 32.82 2.57
3176 3551 7.109501 ACATGTACCAGCAACTACATAAATGA 58.890 34.615 0.00 0.00 32.82 2.57
3177 3552 7.320443 ACATGTACCAGCAACTACATAAATG 57.680 36.000 0.00 0.00 32.82 2.32
3178 3553 9.273016 GATACATGTACCAGCAACTACATAAAT 57.727 33.333 7.96 0.00 32.82 1.40
3179 3554 8.482943 AGATACATGTACCAGCAACTACATAAA 58.517 33.333 7.96 0.00 32.82 1.40
3180 3555 7.926018 CAGATACATGTACCAGCAACTACATAA 59.074 37.037 7.96 0.00 32.82 1.90
3181 3556 7.433680 CAGATACATGTACCAGCAACTACATA 58.566 38.462 7.96 0.00 32.82 2.29
3182 3557 6.283694 CAGATACATGTACCAGCAACTACAT 58.716 40.000 7.96 0.00 34.52 2.29
3183 3558 5.660460 CAGATACATGTACCAGCAACTACA 58.340 41.667 7.96 0.00 0.00 2.74
3184 3559 4.508124 GCAGATACATGTACCAGCAACTAC 59.492 45.833 9.63 0.00 0.00 2.73
3192 3567 6.574269 GCATATGTAGGCAGATACATGTACCA 60.574 42.308 7.96 0.00 44.23 3.25
3196 3571 5.221702 TGTGCATATGTAGGCAGATACATGT 60.222 40.000 15.05 2.69 44.15 3.21
3198 3573 5.240891 GTGTGCATATGTAGGCAGATACAT 58.759 41.667 4.29 11.66 44.15 2.29
3210 3585 2.749466 GCTATGTGGGGTGTGCATATGT 60.749 50.000 4.29 0.00 0.00 2.29
3226 3601 3.990469 CGGTATTCACAAGCCTAGCTATG 59.010 47.826 0.00 0.00 38.25 2.23
3285 3693 4.271661 TGCAGATCAAATGCCATTACTGA 58.728 39.130 13.78 6.26 43.18 3.41
3303 3711 2.740981 GACTCAGGAGTGAACAATGCAG 59.259 50.000 6.68 0.00 42.66 4.41
3322 3730 1.403780 CGGGTACAACTGTGCTAGGAC 60.404 57.143 7.56 7.56 0.00 3.85
3369 3777 8.281212 AGCTTTAATGTTGTAATTCTACCTGG 57.719 34.615 0.00 0.00 0.00 4.45
3383 3791 4.729868 ACCACCAGAAGAGCTTTAATGTT 58.270 39.130 0.00 0.00 0.00 2.71
3384 3792 4.373156 ACCACCAGAAGAGCTTTAATGT 57.627 40.909 0.00 0.00 0.00 2.71
3385 3793 5.464168 CAAACCACCAGAAGAGCTTTAATG 58.536 41.667 0.00 0.00 0.00 1.90
3386 3794 4.021981 GCAAACCACCAGAAGAGCTTTAAT 60.022 41.667 0.00 0.00 0.00 1.40
3387 3795 3.317993 GCAAACCACCAGAAGAGCTTTAA 59.682 43.478 0.00 0.00 0.00 1.52
3388 3796 2.884639 GCAAACCACCAGAAGAGCTTTA 59.115 45.455 0.00 0.00 0.00 1.85
3389 3797 1.683385 GCAAACCACCAGAAGAGCTTT 59.317 47.619 0.00 0.00 0.00 3.51
3390 3798 1.133668 AGCAAACCACCAGAAGAGCTT 60.134 47.619 0.00 0.00 0.00 3.74
3395 3807 0.250295 TCGGAGCAAACCACCAGAAG 60.250 55.000 0.00 0.00 0.00 2.85
3485 3899 2.035321 GCAGGATCTGAGCTAGTACACC 59.965 54.545 0.00 0.00 32.44 4.16
3505 3919 4.518970 TCAAGTAAAACCACAAGGATCTGC 59.481 41.667 0.00 0.00 38.69 4.26
3506 3920 5.335191 GCTCAAGTAAAACCACAAGGATCTG 60.335 44.000 0.00 0.00 38.69 2.90
3507 3921 4.762251 GCTCAAGTAAAACCACAAGGATCT 59.238 41.667 0.00 0.00 38.69 2.75
3508 3922 4.762251 AGCTCAAGTAAAACCACAAGGATC 59.238 41.667 0.00 0.00 38.69 3.36
3509 3923 4.729868 AGCTCAAGTAAAACCACAAGGAT 58.270 39.130 0.00 0.00 38.69 3.24
3510 3924 4.164843 AGCTCAAGTAAAACCACAAGGA 57.835 40.909 0.00 0.00 38.69 3.36
3511 3925 4.455877 CCTAGCTCAAGTAAAACCACAAGG 59.544 45.833 0.00 0.00 42.21 3.61
3512 3926 5.305585 TCCTAGCTCAAGTAAAACCACAAG 58.694 41.667 0.00 0.00 0.00 3.16
3513 3927 5.298989 TCCTAGCTCAAGTAAAACCACAA 57.701 39.130 0.00 0.00 0.00 3.33
3526 3940 8.958060 ATATAGGTGTCTAATTTCCTAGCTCA 57.042 34.615 0.00 0.00 36.24 4.26
3548 3967 8.853126 GCATGCAACCATACCATTATGATATAT 58.147 33.333 14.21 0.00 37.86 0.86
3549 3968 7.285172 GGCATGCAACCATACCATTATGATATA 59.715 37.037 21.36 0.00 37.86 0.86
3550 3969 6.097270 GGCATGCAACCATACCATTATGATAT 59.903 38.462 21.36 0.00 37.86 1.63
3551 3970 5.418524 GGCATGCAACCATACCATTATGATA 59.581 40.000 21.36 0.00 37.86 2.15
3555 3984 3.574749 TGGCATGCAACCATACCATTAT 58.425 40.909 21.36 0.00 39.45 1.28
3556 3985 3.023939 TGGCATGCAACCATACCATTA 57.976 42.857 21.36 0.00 39.45 1.90
3562 3991 2.101783 CTTCCTTGGCATGCAACCATA 58.898 47.619 21.36 0.00 36.96 2.74
3582 4014 6.966021 TGCTGGTTGTAACTCTCAAATTTAC 58.034 36.000 0.00 0.00 0.00 2.01
3610 4042 1.823610 ACGGCCTAAACAGAGAGGTAC 59.176 52.381 0.00 0.00 35.08 3.34
3614 4046 1.751924 AGCTACGGCCTAAACAGAGAG 59.248 52.381 0.00 0.00 39.73 3.20
3616 4048 1.471676 CCAGCTACGGCCTAAACAGAG 60.472 57.143 0.00 0.00 39.73 3.35
3643 4079 7.194278 CAGTCAAGAATAAATTCCTGCATCAG 58.806 38.462 0.00 0.00 37.51 2.90
3644 4080 6.405065 GCAGTCAAGAATAAATTCCTGCATCA 60.405 38.462 18.66 0.00 42.58 3.07
3704 4141 1.269831 CCAGGATAGTAGTGCGCTTCC 60.270 57.143 9.73 6.33 0.00 3.46
3710 4147 3.430929 CCACAAGACCAGGATAGTAGTGC 60.431 52.174 0.00 0.00 0.00 4.40
3730 4170 1.276622 GGGGTCTAGCTTCTTCACCA 58.723 55.000 0.00 0.00 0.00 4.17
3742 4182 0.617820 GCTGTCCTCCTTGGGGTCTA 60.618 60.000 0.00 0.00 36.20 2.59
3791 4246 3.732849 GGGTCCAGGCCAAGGGAG 61.733 72.222 5.01 0.00 32.85 4.30
3887 4342 2.520741 GAGCTCCTCCTCCTCGGG 60.521 72.222 0.87 0.00 0.00 5.14
4007 4465 0.101399 ACGGACAGACAGATCGATGC 59.899 55.000 0.54 0.00 0.00 3.91
4047 4510 5.610982 ACCTGCCATTACCTAATCATCCTAA 59.389 40.000 0.00 0.00 0.00 2.69
4060 4523 4.638865 CCTAACCTAACAACCTGCCATTAC 59.361 45.833 0.00 0.00 0.00 1.89
4096 4559 6.098017 ACCTGCTAACTCTAATAAACGTCAC 58.902 40.000 0.00 0.00 0.00 3.67
4104 4567 6.200114 ACCTGGTAACCTGCTAACTCTAATA 58.800 40.000 0.00 0.00 0.00 0.98
4105 4568 5.030820 ACCTGGTAACCTGCTAACTCTAAT 58.969 41.667 0.00 0.00 0.00 1.73
4144 4611 0.107459 CCTGAAAGTGGGGAGCTAGC 60.107 60.000 6.62 6.62 0.00 3.42
4163 4630 3.490759 CAGTGCGACCGTGATGCC 61.491 66.667 0.00 0.00 0.00 4.40
4165 4632 1.492873 CAACAGTGCGACCGTGATG 59.507 57.895 0.00 0.00 0.00 3.07
4191 4658 2.224867 CCTCTTCTTTTCTGGCCCAAGA 60.225 50.000 0.00 0.00 0.00 3.02
4202 4669 2.609747 GCCTTTTCCCCCTCTTCTTTT 58.390 47.619 0.00 0.00 0.00 2.27
4318 4785 4.335647 CAGCCAAGCCGGACCTGT 62.336 66.667 5.05 0.00 36.56 4.00
4350 4817 2.288213 GCAGGCTACACCAAAAAGGAAC 60.288 50.000 0.00 0.00 43.14 3.62
4357 4824 0.184933 ACCAAGCAGGCTACACCAAA 59.815 50.000 0.00 0.00 43.14 3.28
4358 4825 1.060729 TACCAAGCAGGCTACACCAA 58.939 50.000 0.00 0.00 43.14 3.67
4359 4826 1.065491 CATACCAAGCAGGCTACACCA 60.065 52.381 0.00 0.00 43.14 4.17
4360 4827 1.209504 TCATACCAAGCAGGCTACACC 59.790 52.381 0.00 0.00 43.14 4.16
4361 4828 2.093447 ACTCATACCAAGCAGGCTACAC 60.093 50.000 0.00 0.00 43.14 2.90
4362 4829 2.187958 ACTCATACCAAGCAGGCTACA 58.812 47.619 0.00 0.00 43.14 2.74
4363 4830 2.990066 ACTCATACCAAGCAGGCTAC 57.010 50.000 0.00 0.00 43.14 3.58
4364 4831 2.361119 CGTACTCATACCAAGCAGGCTA 59.639 50.000 0.00 0.00 43.14 3.93
4365 4832 1.137086 CGTACTCATACCAAGCAGGCT 59.863 52.381 0.00 0.00 43.14 4.58
4366 4833 1.134788 ACGTACTCATACCAAGCAGGC 60.135 52.381 0.00 0.00 43.14 4.85
4367 4834 2.961526 ACGTACTCATACCAAGCAGG 57.038 50.000 0.00 0.00 45.67 4.85
4368 4835 5.241064 AGGTATACGTACTCATACCAAGCAG 59.759 44.000 23.94 0.00 46.17 4.24
4369 4836 5.135383 AGGTATACGTACTCATACCAAGCA 58.865 41.667 23.94 0.00 46.17 3.91
4370 4837 5.702349 AGGTATACGTACTCATACCAAGC 57.298 43.478 23.94 7.22 46.17 4.01
4371 4838 7.035840 ACAAGGTATACGTACTCATACCAAG 57.964 40.000 23.94 19.38 46.17 3.61
4372 4839 7.408756 AACAAGGTATACGTACTCATACCAA 57.591 36.000 23.94 0.00 46.17 3.67
4373 4840 8.696043 ATAACAAGGTATACGTACTCATACCA 57.304 34.615 23.94 11.21 46.17 3.25
4374 4841 9.617975 GAATAACAAGGTATACGTACTCATACC 57.382 37.037 18.41 18.41 44.76 2.73
4375 4842 9.617975 GGAATAACAAGGTATACGTACTCATAC 57.382 37.037 0.00 0.00 0.00 2.39
4376 4843 9.578576 AGGAATAACAAGGTATACGTACTCATA 57.421 33.333 0.00 0.00 0.00 2.15
4377 4844 8.474710 AGGAATAACAAGGTATACGTACTCAT 57.525 34.615 0.00 0.00 0.00 2.90
4378 4845 7.886629 AGGAATAACAAGGTATACGTACTCA 57.113 36.000 0.00 0.00 0.00 3.41
4379 4846 7.168804 GCAAGGAATAACAAGGTATACGTACTC 59.831 40.741 0.00 0.00 0.00 2.59
4380 4847 6.982724 GCAAGGAATAACAAGGTATACGTACT 59.017 38.462 0.00 0.00 0.00 2.73
4381 4848 6.757947 TGCAAGGAATAACAAGGTATACGTAC 59.242 38.462 0.00 0.00 0.00 3.67
4382 4849 6.876155 TGCAAGGAATAACAAGGTATACGTA 58.124 36.000 0.00 0.00 0.00 3.57
4383 4850 5.736813 TGCAAGGAATAACAAGGTATACGT 58.263 37.500 0.00 0.00 0.00 3.57
4384 4851 6.287107 CTGCAAGGAATAACAAGGTATACG 57.713 41.667 0.00 0.00 0.00 3.06
4413 4880 4.770531 GGGGTGCTATTACCTCTTGTTTTT 59.229 41.667 0.00 0.00 38.23 1.94
4414 4881 4.202631 TGGGGTGCTATTACCTCTTGTTTT 60.203 41.667 0.00 0.00 41.99 2.43
4415 4882 3.332485 TGGGGTGCTATTACCTCTTGTTT 59.668 43.478 0.00 0.00 41.99 2.83
4416 4883 2.916934 TGGGGTGCTATTACCTCTTGTT 59.083 45.455 0.00 0.00 41.99 2.83
4417 4884 2.505819 CTGGGGTGCTATTACCTCTTGT 59.494 50.000 0.00 0.00 41.99 3.16
4418 4885 2.158755 CCTGGGGTGCTATTACCTCTTG 60.159 54.545 0.00 0.00 41.99 3.02
4475 4942 5.295540 GGCTTGGTCAAATTTTGCAAGTTTA 59.704 36.000 20.78 0.00 34.94 2.01
4488 4955 0.780637 TGGGGTATGGCTTGGTCAAA 59.219 50.000 0.00 0.00 0.00 2.69
4518 4985 6.007076 TGGCCTGAAACTAAAACATCACATA 58.993 36.000 3.32 0.00 0.00 2.29
4534 5001 2.334946 GCGCTGTGATTGGCCTGAA 61.335 57.895 3.32 0.00 0.00 3.02
4535 5002 2.747460 GCGCTGTGATTGGCCTGA 60.747 61.111 3.32 0.00 0.00 3.86
4603 5081 1.243902 GGGTTGAATCAGGCAAACGA 58.756 50.000 0.00 0.00 33.82 3.85
4683 5161 6.129431 CGAAGATGTTATACAGCGTCATGTAC 60.129 42.308 10.57 0.00 41.77 2.90
4783 5261 1.135859 CGACCAATGCTGCTGAAAGTC 60.136 52.381 0.00 1.12 35.30 3.01
4809 5287 2.342648 GCCCTCGTCGGTGAGTTT 59.657 61.111 0.00 0.00 34.04 2.66
4835 5313 1.445410 TTCGCCATCAAGGACGACG 60.445 57.895 0.00 0.00 42.66 5.12
4962 5452 1.734655 AAGACCTGCTGAAGAGGGAA 58.265 50.000 0.00 0.00 34.56 3.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.