Multiple sequence alignment - TraesCS2B01G420300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G420300 chr2B 100.000 2360 0 0 1 2360 602215287 602212928 0.000000e+00 4359.0
1 TraesCS2B01G420300 chr2B 92.639 1345 91 3 32 1376 717931261 717929925 0.000000e+00 1929.0
2 TraesCS2B01G420300 chr2B 85.504 407 55 1 1854 2256 94265218 94264812 2.800000e-114 422.0
3 TraesCS2B01G420300 chr3D 93.169 1376 86 5 1 1376 69660437 69661804 0.000000e+00 2013.0
4 TraesCS2B01G420300 chr6A 92.587 1376 91 6 1 1376 502339300 502340664 0.000000e+00 1965.0
5 TraesCS2B01G420300 chr7B 92.224 1376 98 3 1 1376 84527273 84528639 0.000000e+00 1940.0
6 TraesCS2B01G420300 chr3A 92.046 1383 100 7 4 1386 681100856 681099484 0.000000e+00 1936.0
7 TraesCS2B01G420300 chr5B 91.871 1390 103 4 1 1389 633276935 633278315 0.000000e+00 1932.0
8 TraesCS2B01G420300 chr6B 91.691 1372 106 2 5 1376 695056665 695058028 0.000000e+00 1895.0
9 TraesCS2B01G420300 chr4A 91.396 1383 110 4 4 1386 107232273 107230900 0.000000e+00 1886.0
10 TraesCS2B01G420300 chr4A 77.974 227 34 9 1663 1888 713289727 713289938 6.850000e-26 128.0
11 TraesCS2B01G420300 chr7A 90.504 1390 123 7 1 1390 96153771 96155151 0.000000e+00 1827.0
12 TraesCS2B01G420300 chr2D 85.938 576 56 9 1685 2255 512503731 512503176 2.020000e-165 592.0
13 TraesCS2B01G420300 chr1D 88.406 69 8 0 1854 1922 145075956 145076024 1.500000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G420300 chr2B 602212928 602215287 2359 True 4359 4359 100.000 1 2360 1 chr2B.!!$R2 2359
1 TraesCS2B01G420300 chr2B 717929925 717931261 1336 True 1929 1929 92.639 32 1376 1 chr2B.!!$R3 1344
2 TraesCS2B01G420300 chr3D 69660437 69661804 1367 False 2013 2013 93.169 1 1376 1 chr3D.!!$F1 1375
3 TraesCS2B01G420300 chr6A 502339300 502340664 1364 False 1965 1965 92.587 1 1376 1 chr6A.!!$F1 1375
4 TraesCS2B01G420300 chr7B 84527273 84528639 1366 False 1940 1940 92.224 1 1376 1 chr7B.!!$F1 1375
5 TraesCS2B01G420300 chr3A 681099484 681100856 1372 True 1936 1936 92.046 4 1386 1 chr3A.!!$R1 1382
6 TraesCS2B01G420300 chr5B 633276935 633278315 1380 False 1932 1932 91.871 1 1389 1 chr5B.!!$F1 1388
7 TraesCS2B01G420300 chr6B 695056665 695058028 1363 False 1895 1895 91.691 5 1376 1 chr6B.!!$F1 1371
8 TraesCS2B01G420300 chr4A 107230900 107232273 1373 True 1886 1886 91.396 4 1386 1 chr4A.!!$R1 1382
9 TraesCS2B01G420300 chr7A 96153771 96155151 1380 False 1827 1827 90.504 1 1390 1 chr7A.!!$F1 1389
10 TraesCS2B01G420300 chr2D 512503176 512503731 555 True 592 592 85.938 1685 2255 1 chr2D.!!$R1 570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
950 952 0.516877 TCGAAGCAACATTTGGAGCG 59.483 50.0 0.0 0.0 0.0 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2337 2348 0.034059 CCACTGATGGCGGGAGATAC 59.966 60.0 0.0 0.0 39.82 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 5.711976 AGTTGGTGATGGTGAGAAAATTAGG 59.288 40.000 0.00 0.00 0.00 2.69
72 73 2.825223 TGATCCCTGGATATCGCAGAT 58.175 47.619 17.78 8.63 36.63 2.90
76 77 1.206610 CCCTGGATATCGCAGATCCTG 59.793 57.143 17.78 8.56 45.12 3.86
82 83 3.583806 GATATCGCAGATCCTGACAAGG 58.416 50.000 0.00 0.00 45.12 3.61
127 128 7.301789 GCAACAATCTTCTTTCTAGAGTTTCC 58.698 38.462 0.00 0.00 0.00 3.13
140 141 4.559862 AGAGTTTCCGACCTCATTGATT 57.440 40.909 0.00 0.00 0.00 2.57
180 181 2.660572 TGAGCAGCTGGTTAACCAAAA 58.339 42.857 26.90 5.89 46.97 2.44
181 182 3.230134 TGAGCAGCTGGTTAACCAAAAT 58.770 40.909 26.90 13.50 46.97 1.82
185 186 3.745975 GCAGCTGGTTAACCAAAATTTCC 59.254 43.478 26.90 9.13 46.97 3.13
188 189 3.243941 GCTGGTTAACCAAAATTTCCGGT 60.244 43.478 26.90 6.45 46.97 5.28
210 211 2.636830 AGTGGATGCTCGAAGGATTTG 58.363 47.619 0.00 0.00 0.00 2.32
213 214 1.134098 GGATGCTCGAAGGATTTGGGA 60.134 52.381 0.00 0.00 28.48 4.37
222 223 3.430453 GAAGGATTTGGGACATTCCACA 58.570 45.455 0.00 0.00 41.66 4.17
250 251 8.152898 CCATTACATGAGATGACAGATTTCCTA 58.847 37.037 0.00 0.00 0.00 2.94
257 258 4.411540 AGATGACAGATTTCCTAGCATGGT 59.588 41.667 1.62 1.62 0.00 3.55
273 274 3.753272 GCATGGTACATGACAAAGTCAGT 59.247 43.478 13.02 6.71 46.04 3.41
334 335 5.994668 GGAATTTCAATTTGGGCACAAGTTA 59.005 36.000 9.32 0.00 34.74 2.24
401 402 3.054655 GGTATGGAACTTAGTCTGCCCAA 60.055 47.826 0.00 0.00 0.00 4.12
406 407 3.634910 GGAACTTAGTCTGCCCAACAAAA 59.365 43.478 0.00 0.00 0.00 2.44
434 435 0.744414 ATTTATGTGGTGCGCGCTCT 60.744 50.000 33.29 14.99 0.00 4.09
457 458 2.362397 GAGTGCTATTCCCTGTCGATCA 59.638 50.000 0.00 0.00 0.00 2.92
528 529 5.789574 AACCAGGGACCTAATGACATAAA 57.210 39.130 0.00 0.00 0.00 1.40
568 569 1.327303 AATTGGCAATGGACGTGTGT 58.673 45.000 14.47 0.00 0.00 3.72
574 575 2.351726 GGCAATGGACGTGTGTAAGATC 59.648 50.000 0.00 0.00 0.00 2.75
597 598 3.849911 TCGGTCTTGAGCTTGTTATCAG 58.150 45.455 0.00 0.00 0.00 2.90
619 620 3.088532 ACAGGCACAGAAAGTTGACAAA 58.911 40.909 0.00 0.00 0.00 2.83
667 668 1.605710 CTGTGCCTTCCAGAACAACAG 59.394 52.381 0.00 0.00 31.38 3.16
696 697 1.452145 TTGGGCTTGCCGAAGTTCAC 61.452 55.000 4.99 0.00 0.00 3.18
758 759 4.669206 AGGCAAAAATTGACACATGACA 57.331 36.364 0.00 0.00 42.71 3.58
777 778 3.374745 ACAAAGAAACTCAAAGCGCATG 58.625 40.909 11.47 8.75 0.00 4.06
778 779 3.181487 ACAAAGAAACTCAAAGCGCATGT 60.181 39.130 11.47 0.00 0.00 3.21
779 780 2.977405 AGAAACTCAAAGCGCATGTC 57.023 45.000 11.47 1.83 0.00 3.06
780 781 2.221169 AGAAACTCAAAGCGCATGTCA 58.779 42.857 11.47 0.00 0.00 3.58
781 782 2.618241 AGAAACTCAAAGCGCATGTCAA 59.382 40.909 11.47 0.00 0.00 3.18
782 783 3.254166 AGAAACTCAAAGCGCATGTCAAT 59.746 39.130 11.47 0.00 0.00 2.57
783 784 3.648339 AACTCAAAGCGCATGTCAATT 57.352 38.095 11.47 0.00 0.00 2.32
832 833 7.321745 GCTTAGTAGCAAATTACACCATCTT 57.678 36.000 0.00 0.00 46.95 2.40
856 857 2.359975 CCCAAAGGCTCACGTCCC 60.360 66.667 0.00 0.00 0.00 4.46
857 858 2.429930 CCAAAGGCTCACGTCCCA 59.570 61.111 0.00 0.00 0.00 4.37
934 936 5.116180 GGGATTTGATAATGACACACTCGA 58.884 41.667 0.00 0.00 0.00 4.04
950 952 0.516877 TCGAAGCAACATTTGGAGCG 59.483 50.000 0.00 0.00 0.00 5.03
1056 1059 4.739137 GCAATTGCAGTGAGGTTTGGTTTA 60.739 41.667 25.36 0.00 41.59 2.01
1092 1095 5.072741 ACTGTTGGATGCAGTAAGTTTGAT 58.927 37.500 0.00 0.00 44.41 2.57
1105 1108 6.963242 CAGTAAGTTTGATGTGAATTCGGATG 59.037 38.462 0.04 0.00 0.00 3.51
1152 1155 5.340439 GCCAAGGCTACTCTTCTTTAGTA 57.660 43.478 3.29 0.00 38.26 1.82
1164 1167 5.892568 TCTTCTTTAGTAGCTTCGTCCATC 58.107 41.667 0.00 0.00 0.00 3.51
1168 1171 6.971602 TCTTTAGTAGCTTCGTCCATCATAG 58.028 40.000 0.00 0.00 0.00 2.23
1169 1172 6.771267 TCTTTAGTAGCTTCGTCCATCATAGA 59.229 38.462 0.00 0.00 0.00 1.98
1170 1173 7.448777 TCTTTAGTAGCTTCGTCCATCATAGAT 59.551 37.037 0.00 0.00 0.00 1.98
1208 1214 7.156876 TGTCATTAGATTTTTCCCATGTCAC 57.843 36.000 0.00 0.00 0.00 3.67
1266 1272 4.507710 CTCATGAACTAGCAAGGTTAGCA 58.492 43.478 0.00 0.00 0.00 3.49
1407 1413 2.106844 CCAATAGGGTTTCTGCCGC 58.893 57.895 0.00 0.00 0.00 6.53
1408 1414 1.384222 CCAATAGGGTTTCTGCCGCC 61.384 60.000 0.00 0.00 0.00 6.13
1409 1415 1.451387 AATAGGGTTTCTGCCGCCG 60.451 57.895 0.00 0.00 0.00 6.46
1410 1416 4.770874 TAGGGTTTCTGCCGCCGC 62.771 66.667 0.00 0.00 0.00 6.53
1429 1435 4.856607 CCTCTTCGAGCCGCCGAC 62.857 72.222 3.80 0.00 38.39 4.79
1461 1467 3.123620 CAGCTTGCAGCCGAGGAC 61.124 66.667 4.77 0.00 43.77 3.85
1462 1468 4.400961 AGCTTGCAGCCGAGGACC 62.401 66.667 4.77 0.00 43.77 4.46
1464 1470 4.069232 CTTGCAGCCGAGGACCGA 62.069 66.667 0.00 0.00 41.76 4.69
1465 1471 3.997064 CTTGCAGCCGAGGACCGAG 62.997 68.421 0.00 0.00 41.76 4.63
1473 1479 4.131088 GAGGACCGAGGCCACGTC 62.131 72.222 21.30 16.93 0.00 4.34
1474 1480 4.988716 AGGACCGAGGCCACGTCA 62.989 66.667 21.30 0.00 0.00 4.35
1475 1481 4.736896 GGACCGAGGCCACGTCAC 62.737 72.222 21.30 11.32 0.00 3.67
1476 1482 3.986006 GACCGAGGCCACGTCACA 61.986 66.667 21.30 0.00 0.00 3.58
1477 1483 3.916392 GACCGAGGCCACGTCACAG 62.916 68.421 21.30 7.97 0.00 3.66
1479 1485 4.363990 CGAGGCCACGTCACAGCT 62.364 66.667 15.01 0.00 0.00 4.24
1480 1486 2.740055 GAGGCCACGTCACAGCTG 60.740 66.667 13.48 13.48 0.00 4.24
1481 1487 4.320456 AGGCCACGTCACAGCTGG 62.320 66.667 19.93 7.28 0.00 4.85
1482 1488 4.626081 GGCCACGTCACAGCTGGT 62.626 66.667 19.93 2.70 0.00 4.00
1483 1489 3.044305 GCCACGTCACAGCTGGTC 61.044 66.667 19.93 6.82 0.00 4.02
1484 1490 2.734723 CCACGTCACAGCTGGTCG 60.735 66.667 19.93 19.95 0.00 4.79
1485 1491 2.027605 CACGTCACAGCTGGTCGT 59.972 61.111 19.93 20.58 35.12 4.34
1486 1492 2.027605 ACGTCACAGCTGGTCGTG 59.972 61.111 24.11 12.63 33.55 4.35
1487 1493 2.335011 CGTCACAGCTGGTCGTGA 59.665 61.111 19.93 9.76 39.77 4.35
1488 1494 1.730902 CGTCACAGCTGGTCGTGAG 60.731 63.158 19.93 3.36 42.55 3.51
1489 1495 2.024319 GTCACAGCTGGTCGTGAGC 61.024 63.158 19.93 4.14 42.55 4.26
1490 1496 2.740055 CACAGCTGGTCGTGAGCC 60.740 66.667 19.93 0.00 37.12 4.70
1491 1497 4.008933 ACAGCTGGTCGTGAGCCC 62.009 66.667 19.93 0.00 37.12 5.19
1494 1500 4.803426 GCTGGTCGTGAGCCCGAG 62.803 72.222 0.00 0.00 37.56 4.63
1512 1518 4.742201 CCCGAGGCCACGTCACAG 62.742 72.222 21.30 5.35 0.00 3.66
1514 1520 4.363990 CGAGGCCACGTCACAGCT 62.364 66.667 15.01 0.00 0.00 4.24
1515 1521 2.740055 GAGGCCACGTCACAGCTG 60.740 66.667 13.48 13.48 0.00 4.24
1516 1522 4.320456 AGGCCACGTCACAGCTGG 62.320 66.667 19.93 7.28 0.00 4.85
1517 1523 4.626081 GGCCACGTCACAGCTGGT 62.626 66.667 19.93 2.70 0.00 4.00
1518 1524 3.044305 GCCACGTCACAGCTGGTC 61.044 66.667 19.93 6.82 0.00 4.02
1519 1525 2.734723 CCACGTCACAGCTGGTCG 60.735 66.667 19.93 19.95 0.00 4.79
1520 1526 2.027605 CACGTCACAGCTGGTCGT 59.972 61.111 19.93 20.58 35.12 4.34
1521 1527 2.027605 ACGTCACAGCTGGTCGTG 59.972 61.111 24.11 12.63 33.55 4.35
1522 1528 2.335011 CGTCACAGCTGGTCGTGA 59.665 61.111 19.93 9.76 39.77 4.35
1553 1559 2.046023 CGGGAGCAGCCATCACAA 60.046 61.111 0.00 0.00 38.95 3.33
1554 1560 2.110967 CGGGAGCAGCCATCACAAG 61.111 63.158 0.00 0.00 38.95 3.16
1555 1561 1.751927 GGGAGCAGCCATCACAAGG 60.752 63.158 0.00 0.00 38.95 3.61
1556 1562 1.751927 GGAGCAGCCATCACAAGGG 60.752 63.158 0.00 0.00 36.34 3.95
1561 1567 2.757099 GCCATCACAAGGGCCCTG 60.757 66.667 29.50 21.81 46.79 4.45
1562 1568 2.043652 CCATCACAAGGGCCCTGG 60.044 66.667 29.50 27.70 0.00 4.45
1563 1569 2.765969 CATCACAAGGGCCCTGGT 59.234 61.111 27.80 27.80 0.00 4.00
1564 1570 1.379044 CATCACAAGGGCCCTGGTC 60.379 63.158 30.62 0.00 0.00 4.02
1565 1571 2.971598 ATCACAAGGGCCCTGGTCG 61.972 63.158 30.62 23.16 0.00 4.79
1566 1572 3.953775 CACAAGGGCCCTGGTCGT 61.954 66.667 30.62 18.99 0.00 4.34
1567 1573 3.953775 ACAAGGGCCCTGGTCGTG 61.954 66.667 27.80 22.03 0.00 4.35
1580 1586 4.652131 TCGTGCGCCCCCACATTT 62.652 61.111 4.18 0.00 35.47 2.32
1581 1587 4.114997 CGTGCGCCCCCACATTTC 62.115 66.667 4.18 0.00 35.47 2.17
1582 1588 3.758931 GTGCGCCCCCACATTTCC 61.759 66.667 4.18 0.00 35.80 3.13
1585 1591 4.060667 CGCCCCCACATTTCCCCT 62.061 66.667 0.00 0.00 0.00 4.79
1586 1592 2.449777 GCCCCCACATTTCCCCTT 59.550 61.111 0.00 0.00 0.00 3.95
1587 1593 1.229496 GCCCCCACATTTCCCCTTT 60.229 57.895 0.00 0.00 0.00 3.11
1588 1594 1.552799 GCCCCCACATTTCCCCTTTG 61.553 60.000 0.00 0.00 0.00 2.77
1589 1595 0.116143 CCCCCACATTTCCCCTTTGA 59.884 55.000 0.00 0.00 0.00 2.69
1590 1596 1.273781 CCCCCACATTTCCCCTTTGAT 60.274 52.381 0.00 0.00 0.00 2.57
1591 1597 2.110578 CCCCACATTTCCCCTTTGATC 58.889 52.381 0.00 0.00 0.00 2.92
1592 1598 2.110578 CCCACATTTCCCCTTTGATCC 58.889 52.381 0.00 0.00 0.00 3.36
1593 1599 2.559478 CCCACATTTCCCCTTTGATCCA 60.559 50.000 0.00 0.00 0.00 3.41
1594 1600 2.497273 CCACATTTCCCCTTTGATCCAC 59.503 50.000 0.00 0.00 0.00 4.02
1595 1601 2.497273 CACATTTCCCCTTTGATCCACC 59.503 50.000 0.00 0.00 0.00 4.61
1596 1602 1.750778 CATTTCCCCTTTGATCCACCG 59.249 52.381 0.00 0.00 0.00 4.94
1597 1603 1.068948 TTTCCCCTTTGATCCACCGA 58.931 50.000 0.00 0.00 0.00 4.69
1598 1604 0.326927 TTCCCCTTTGATCCACCGAC 59.673 55.000 0.00 0.00 0.00 4.79
1599 1605 1.449601 CCCCTTTGATCCACCGACG 60.450 63.158 0.00 0.00 0.00 5.12
1600 1606 2.106683 CCCTTTGATCCACCGACGC 61.107 63.158 0.00 0.00 0.00 5.19
1601 1607 1.375396 CCTTTGATCCACCGACGCA 60.375 57.895 0.00 0.00 0.00 5.24
1602 1608 0.744414 CCTTTGATCCACCGACGCAT 60.744 55.000 0.00 0.00 0.00 4.73
1603 1609 0.374758 CTTTGATCCACCGACGCATG 59.625 55.000 0.00 0.00 0.00 4.06
1604 1610 1.024046 TTTGATCCACCGACGCATGG 61.024 55.000 9.50 9.50 37.32 3.66
1607 1613 3.307108 TCCACCGACGCATGGACA 61.307 61.111 13.41 0.00 40.17 4.02
1608 1614 3.118454 CCACCGACGCATGGACAC 61.118 66.667 10.09 0.00 38.34 3.67
1609 1615 3.118454 CACCGACGCATGGACACC 61.118 66.667 0.00 0.00 0.00 4.16
1610 1616 4.735132 ACCGACGCATGGACACCG 62.735 66.667 0.00 0.00 0.00 4.94
1611 1617 4.429212 CCGACGCATGGACACCGA 62.429 66.667 0.00 0.00 0.00 4.69
1612 1618 3.179265 CGACGCATGGACACCGAC 61.179 66.667 0.00 0.00 0.00 4.79
1613 1619 3.179265 GACGCATGGACACCGACG 61.179 66.667 0.00 0.00 0.00 5.12
1614 1620 3.620300 GACGCATGGACACCGACGA 62.620 63.158 0.00 0.00 0.00 4.20
1615 1621 2.880879 CGCATGGACACCGACGAG 60.881 66.667 0.00 0.00 0.00 4.18
1616 1622 3.188786 GCATGGACACCGACGAGC 61.189 66.667 0.00 0.00 0.00 5.03
1617 1623 2.573869 CATGGACACCGACGAGCT 59.426 61.111 0.00 0.00 0.00 4.09
1618 1624 1.517257 CATGGACACCGACGAGCTC 60.517 63.158 2.73 2.73 0.00 4.09
1619 1625 1.679305 ATGGACACCGACGAGCTCT 60.679 57.895 12.85 0.00 0.00 4.09
1620 1626 1.938657 ATGGACACCGACGAGCTCTG 61.939 60.000 12.85 8.06 0.00 3.35
1621 1627 2.333417 GGACACCGACGAGCTCTGA 61.333 63.158 12.85 0.00 0.00 3.27
1622 1628 1.135731 GACACCGACGAGCTCTGAG 59.864 63.158 12.85 0.00 0.00 3.35
1623 1629 2.259875 GACACCGACGAGCTCTGAGG 62.260 65.000 12.85 13.65 0.00 3.86
1624 1630 2.752238 ACCGACGAGCTCTGAGGG 60.752 66.667 12.85 9.99 0.00 4.30
1625 1631 3.522731 CCGACGAGCTCTGAGGGG 61.523 72.222 12.85 2.07 0.00 4.79
1626 1632 4.200283 CGACGAGCTCTGAGGGGC 62.200 72.222 12.85 0.00 0.00 5.80
1627 1633 4.200283 GACGAGCTCTGAGGGGCG 62.200 72.222 12.85 0.00 0.00 6.13
1648 1654 3.136123 CAAGTGGGCTCCGGCATG 61.136 66.667 0.00 0.00 40.87 4.06
1649 1655 3.650950 AAGTGGGCTCCGGCATGT 61.651 61.111 0.00 0.00 40.87 3.21
1650 1656 3.925630 AAGTGGGCTCCGGCATGTG 62.926 63.158 0.00 0.00 40.87 3.21
1651 1657 4.408821 GTGGGCTCCGGCATGTGA 62.409 66.667 0.00 0.00 40.87 3.58
1652 1658 4.100084 TGGGCTCCGGCATGTGAG 62.100 66.667 0.00 0.00 40.87 3.51
1653 1659 4.864334 GGGCTCCGGCATGTGAGG 62.864 72.222 0.00 4.55 40.87 3.86
1671 1677 3.322466 CCACTGGCGGAAGGACCT 61.322 66.667 0.00 0.00 36.31 3.85
1672 1678 2.266055 CACTGGCGGAAGGACCTC 59.734 66.667 0.00 0.00 36.31 3.85
1673 1679 3.003763 ACTGGCGGAAGGACCTCC 61.004 66.667 0.00 0.00 43.39 4.30
1679 1685 3.839432 GGAAGGACCTCCGGCGAG 61.839 72.222 9.30 3.68 42.08 5.03
1680 1686 3.069318 GAAGGACCTCCGGCGAGT 61.069 66.667 9.30 1.93 42.08 4.18
1681 1687 2.603776 AAGGACCTCCGGCGAGTT 60.604 61.111 9.30 0.00 42.08 3.01
1682 1688 2.560051 GAAGGACCTCCGGCGAGTTC 62.560 65.000 9.30 1.02 42.08 3.01
1683 1689 4.493747 GGACCTCCGGCGAGTTCG 62.494 72.222 9.30 0.00 43.27 3.95
1707 1713 1.467678 CCCCCTGCATCTCCGTCTAG 61.468 65.000 0.00 0.00 0.00 2.43
1729 1735 4.039092 CACTGGCCCCCTGGTGAG 62.039 72.222 0.00 0.00 32.89 3.51
1736 1742 2.439104 CCCCCTGGTGAGCTAGCTC 61.439 68.421 33.47 33.47 43.01 4.09
1739 1745 1.754621 CCTGGTGAGCTAGCTCCGA 60.755 63.158 35.76 23.90 42.09 4.55
1779 1785 0.750850 GGTGTCCGAGCTATTGCCTA 59.249 55.000 0.00 0.00 40.80 3.93
1789 1795 3.696548 GAGCTATTGCCTACAAGCCTTTT 59.303 43.478 0.00 0.00 39.69 2.27
1857 1864 8.578448 TGATCCATTTCTGTACATCAAATTGA 57.422 30.769 12.76 12.76 0.00 2.57
1889 1896 5.621197 TTGGTTGATCCATTTTCTGTACG 57.379 39.130 0.00 0.00 46.60 3.67
1890 1897 4.006989 TGGTTGATCCATTTTCTGTACGG 58.993 43.478 0.00 0.00 41.93 4.02
1891 1898 3.181500 GGTTGATCCATTTTCTGTACGGC 60.181 47.826 0.00 0.00 35.97 5.68
1892 1899 3.342377 TGATCCATTTTCTGTACGGCA 57.658 42.857 0.00 0.00 0.00 5.69
1893 1900 3.680490 TGATCCATTTTCTGTACGGCAA 58.320 40.909 0.00 0.00 0.00 4.52
1894 1901 4.075682 TGATCCATTTTCTGTACGGCAAA 58.924 39.130 1.90 1.90 0.00 3.68
1895 1902 4.704540 TGATCCATTTTCTGTACGGCAAAT 59.295 37.500 6.49 6.49 0.00 2.32
1896 1903 4.695217 TCCATTTTCTGTACGGCAAATC 57.305 40.909 9.06 0.00 0.00 2.17
1897 1904 3.126171 TCCATTTTCTGTACGGCAAATCG 59.874 43.478 9.06 4.07 0.00 3.34
1898 1905 3.126171 CCATTTTCTGTACGGCAAATCGA 59.874 43.478 9.06 0.00 0.00 3.59
1899 1906 4.334443 CATTTTCTGTACGGCAAATCGAG 58.666 43.478 9.06 0.00 0.00 4.04
1900 1907 3.306917 TTTCTGTACGGCAAATCGAGA 57.693 42.857 0.00 0.00 0.00 4.04
1901 1908 3.520290 TTCTGTACGGCAAATCGAGAT 57.480 42.857 0.00 0.00 0.00 2.75
1924 1931 7.756722 AGATGTCGAATTGGTTGATTCATTTTC 59.243 33.333 0.00 0.00 36.12 2.29
1926 1933 6.862608 TGTCGAATTGGTTGATTCATTTTCTG 59.137 34.615 0.00 0.00 36.12 3.02
1950 1957 7.324935 TGTTTCCTATTGCTAAGTATTCGTGA 58.675 34.615 0.00 0.00 0.00 4.35
1994 2005 5.809001 TCTATTGGACAGTGAGCATTTTCT 58.191 37.500 0.00 0.00 0.00 2.52
2004 2015 6.039717 ACAGTGAGCATTTTCTGTACATTGTT 59.960 34.615 0.00 0.00 39.01 2.83
2010 2021 8.165239 AGCATTTTCTGTACATTGTTCTGTTA 57.835 30.769 0.00 0.00 0.00 2.41
2018 2029 9.500785 TCTGTACATTGTTCTGTTAATGATTGA 57.499 29.630 0.00 0.00 37.63 2.57
2020 2031 9.500785 TGTACATTGTTCTGTTAATGATTGAGA 57.499 29.630 0.00 0.00 37.63 3.27
2066 2077 8.735303 TGGTGTTTAACATTTTGTGATATTCG 57.265 30.769 0.00 0.00 0.00 3.34
2067 2078 7.810282 TGGTGTTTAACATTTTGTGATATTCGG 59.190 33.333 0.00 0.00 0.00 4.30
2070 2081 9.566530 TGTTTAACATTTTGTGATATTCGGATG 57.433 29.630 0.00 0.00 0.00 3.51
2086 2097 3.127376 TCGGATGCAAGACAATGATGTTG 59.873 43.478 0.00 0.00 40.74 3.33
2095 2106 5.947228 AGACAATGATGTTGGTGTAACTG 57.053 39.130 0.00 0.00 40.74 3.16
2104 2115 5.818678 TGTTGGTGTAACTGAGTCCTAAT 57.181 39.130 0.00 0.00 40.05 1.73
2118 2129 9.268282 ACTGAGTCCTAATTTATAGTTCAAGGA 57.732 33.333 0.00 0.00 0.00 3.36
2141 2152 7.343057 AGGATATTACAGACTCTTCATGTGACA 59.657 37.037 0.00 0.00 0.00 3.58
2142 2153 8.147058 GGATATTACAGACTCTTCATGTGACAT 58.853 37.037 0.00 0.00 0.00 3.06
2146 2157 5.668471 ACAGACTCTTCATGTGACATATGG 58.332 41.667 11.75 0.00 0.00 2.74
2154 2165 9.123902 CTCTTCATGTGACATATGGGAAAATAA 57.876 33.333 11.75 0.00 0.00 1.40
2196 2207 9.305925 CTGAAAATAACTGGATGGCTTATTTTC 57.694 33.333 21.31 21.31 46.00 2.29
2200 2211 4.660789 ACTGGATGGCTTATTTTCATGC 57.339 40.909 0.00 0.00 0.00 4.06
2204 2215 4.467082 TGGATGGCTTATTTTCATGCACTT 59.533 37.500 0.00 0.00 35.02 3.16
2206 2217 5.979517 GGATGGCTTATTTTCATGCACTTAC 59.020 40.000 0.00 0.00 31.08 2.34
2211 2222 5.739161 GCTTATTTTCATGCACTTACTTCCG 59.261 40.000 0.00 0.00 0.00 4.30
2214 2225 1.725641 TCATGCACTTACTTCCGCAG 58.274 50.000 0.00 0.00 37.88 5.18
2237 2248 8.138074 GCAGGAGATTAAATGAGGTTTATTTCC 58.862 37.037 0.00 0.00 32.56 3.13
2239 2250 9.942526 AGGAGATTAAATGAGGTTTATTTCCAT 57.057 29.630 0.00 0.00 33.39 3.41
2252 2263 8.633561 AGGTTTATTTCCATAGCAGCTTATTTC 58.366 33.333 0.00 0.00 0.00 2.17
2255 2266 5.835113 TTTCCATAGCAGCTTATTTCCAC 57.165 39.130 0.00 0.00 0.00 4.02
2256 2267 3.466836 TCCATAGCAGCTTATTTCCACG 58.533 45.455 0.00 0.00 0.00 4.94
2257 2268 3.118408 TCCATAGCAGCTTATTTCCACGT 60.118 43.478 0.00 0.00 0.00 4.49
2258 2269 4.100344 TCCATAGCAGCTTATTTCCACGTA 59.900 41.667 0.00 0.00 0.00 3.57
2259 2270 4.449068 CCATAGCAGCTTATTTCCACGTAG 59.551 45.833 0.00 0.00 0.00 3.51
2260 2271 2.906354 AGCAGCTTATTTCCACGTAGG 58.094 47.619 0.00 0.00 39.47 3.18
2269 2280 3.939710 TCCACGTAGGAGCCCTTAT 57.060 52.632 3.02 0.00 43.07 1.73
2271 2282 3.317455 TCCACGTAGGAGCCCTTATAA 57.683 47.619 3.02 0.00 43.07 0.98
2272 2283 3.853207 TCCACGTAGGAGCCCTTATAAT 58.147 45.455 3.02 0.00 43.07 1.28
2273 2284 3.830755 TCCACGTAGGAGCCCTTATAATC 59.169 47.826 3.02 0.00 43.07 1.75
2274 2285 3.056035 CCACGTAGGAGCCCTTATAATCC 60.056 52.174 0.00 0.00 41.22 3.01
2275 2286 3.056035 CACGTAGGAGCCCTTATAATCCC 60.056 52.174 0.00 0.00 34.61 3.85
2276 2287 3.181409 ACGTAGGAGCCCTTATAATCCCT 60.181 47.826 0.00 0.00 34.61 4.20
2277 2288 3.447944 CGTAGGAGCCCTTATAATCCCTC 59.552 52.174 0.00 0.21 34.61 4.30
2278 2289 2.922564 AGGAGCCCTTATAATCCCTCC 58.077 52.381 13.52 13.52 39.25 4.30
2279 2290 1.555533 GGAGCCCTTATAATCCCTCCG 59.444 57.143 8.71 0.00 30.72 4.63
2280 2291 2.258109 GAGCCCTTATAATCCCTCCGT 58.742 52.381 0.00 0.00 0.00 4.69
2281 2292 2.234168 GAGCCCTTATAATCCCTCCGTC 59.766 54.545 0.00 0.00 0.00 4.79
2282 2293 1.278413 GCCCTTATAATCCCTCCGTCC 59.722 57.143 0.00 0.00 0.00 4.79
2283 2294 2.903926 CCCTTATAATCCCTCCGTCCT 58.096 52.381 0.00 0.00 0.00 3.85
2284 2295 2.567615 CCCTTATAATCCCTCCGTCCTG 59.432 54.545 0.00 0.00 0.00 3.86
2285 2296 3.240302 CCTTATAATCCCTCCGTCCTGT 58.760 50.000 0.00 0.00 0.00 4.00
2286 2297 4.413760 CCTTATAATCCCTCCGTCCTGTA 58.586 47.826 0.00 0.00 0.00 2.74
2287 2298 4.836736 CCTTATAATCCCTCCGTCCTGTAA 59.163 45.833 0.00 0.00 0.00 2.41
2288 2299 5.306160 CCTTATAATCCCTCCGTCCTGTAAA 59.694 44.000 0.00 0.00 0.00 2.01
2289 2300 4.957684 ATAATCCCTCCGTCCTGTAAAG 57.042 45.455 0.00 0.00 0.00 1.85
2290 2301 0.831307 ATCCCTCCGTCCTGTAAAGC 59.169 55.000 0.00 0.00 0.00 3.51
2291 2302 0.252103 TCCCTCCGTCCTGTAAAGCT 60.252 55.000 0.00 0.00 0.00 3.74
2292 2303 0.175989 CCCTCCGTCCTGTAAAGCTC 59.824 60.000 0.00 0.00 0.00 4.09
2293 2304 0.179134 CCTCCGTCCTGTAAAGCTCG 60.179 60.000 0.00 0.00 0.00 5.03
2294 2305 0.526662 CTCCGTCCTGTAAAGCTCGT 59.473 55.000 0.00 0.00 0.00 4.18
2295 2306 0.963962 TCCGTCCTGTAAAGCTCGTT 59.036 50.000 0.00 0.00 0.00 3.85
2296 2307 1.342174 TCCGTCCTGTAAAGCTCGTTT 59.658 47.619 0.00 0.00 0.00 3.60
2297 2308 2.557924 TCCGTCCTGTAAAGCTCGTTTA 59.442 45.455 0.00 0.00 0.00 2.01
2298 2309 3.194116 TCCGTCCTGTAAAGCTCGTTTAT 59.806 43.478 0.00 0.00 33.11 1.40
2299 2310 3.306166 CCGTCCTGTAAAGCTCGTTTATG 59.694 47.826 0.00 0.00 33.11 1.90
2300 2311 3.306166 CGTCCTGTAAAGCTCGTTTATGG 59.694 47.826 0.00 0.00 33.11 2.74
2301 2312 4.501071 GTCCTGTAAAGCTCGTTTATGGA 58.499 43.478 0.00 0.00 35.50 3.41
2302 2313 5.116882 GTCCTGTAAAGCTCGTTTATGGAT 58.883 41.667 0.00 0.00 37.89 3.41
2303 2314 5.006746 GTCCTGTAAAGCTCGTTTATGGATG 59.993 44.000 0.00 0.00 37.89 3.51
2304 2315 4.876107 CCTGTAAAGCTCGTTTATGGATGT 59.124 41.667 0.00 0.00 33.11 3.06
2305 2316 6.046593 CCTGTAAAGCTCGTTTATGGATGTA 58.953 40.000 0.00 0.00 33.11 2.29
2306 2317 6.706270 CCTGTAAAGCTCGTTTATGGATGTAT 59.294 38.462 0.00 0.00 33.11 2.29
2307 2318 7.095607 CCTGTAAAGCTCGTTTATGGATGTATC 60.096 40.741 0.00 0.00 33.11 2.24
2308 2319 7.497595 TGTAAAGCTCGTTTATGGATGTATCT 58.502 34.615 0.00 0.00 33.11 1.98
2309 2320 8.635328 TGTAAAGCTCGTTTATGGATGTATCTA 58.365 33.333 0.00 0.00 33.11 1.98
2310 2321 9.472361 GTAAAGCTCGTTTATGGATGTATCTAA 57.528 33.333 0.00 0.00 33.11 2.10
2311 2322 7.948278 AAGCTCGTTTATGGATGTATCTAAC 57.052 36.000 0.00 0.00 0.00 2.34
2312 2323 6.456501 AGCTCGTTTATGGATGTATCTAACC 58.543 40.000 0.00 0.00 0.00 2.85
2313 2324 6.041637 AGCTCGTTTATGGATGTATCTAACCA 59.958 38.462 0.00 0.00 36.83 3.67
2314 2325 6.366332 GCTCGTTTATGGATGTATCTAACCAG 59.634 42.308 0.00 0.00 35.84 4.00
2315 2326 6.220930 TCGTTTATGGATGTATCTAACCAGC 58.779 40.000 0.00 0.00 35.84 4.85
2316 2327 6.041637 TCGTTTATGGATGTATCTAACCAGCT 59.958 38.462 0.00 0.00 35.84 4.24
2317 2328 6.706270 CGTTTATGGATGTATCTAACCAGCTT 59.294 38.462 0.00 0.00 35.84 3.74
2318 2329 7.226720 CGTTTATGGATGTATCTAACCAGCTTT 59.773 37.037 0.00 0.00 35.84 3.51
2319 2330 8.903820 GTTTATGGATGTATCTAACCAGCTTTT 58.096 33.333 0.00 0.00 35.84 2.27
2320 2331 6.949352 ATGGATGTATCTAACCAGCTTTTG 57.051 37.500 0.00 0.00 35.84 2.44
2328 2339 4.492604 CCAGCTTTTGGGACGGAA 57.507 55.556 0.00 0.00 43.75 4.30
2329 2340 2.257353 CCAGCTTTTGGGACGGAAG 58.743 57.895 0.00 0.00 43.75 3.46
2330 2341 0.537371 CCAGCTTTTGGGACGGAAGT 60.537 55.000 0.00 0.00 43.75 3.01
2331 2342 1.271163 CCAGCTTTTGGGACGGAAGTA 60.271 52.381 0.00 0.00 43.13 2.24
2332 2343 2.812613 CCAGCTTTTGGGACGGAAGTAA 60.813 50.000 0.00 0.00 43.13 2.24
2333 2344 4.123078 CCAGCTTTTGGGACGGAAGTAAT 61.123 47.826 0.00 0.00 43.13 1.89
2334 2345 4.865327 CCAGCTTTTGGGACGGAAGTAATA 60.865 45.833 0.00 0.00 43.13 0.98
2335 2346 6.879183 CCAGCTTTTGGGACGGAAGTAATAC 61.879 48.000 0.00 0.00 43.13 1.89
2336 2347 8.971827 CCAGCTTTTGGGACGGAAGTAATACT 62.972 46.154 0.00 0.00 43.13 2.12
2346 2357 4.518211 ACGGAAGTAATACTGTATCTCCCG 59.482 45.833 11.06 11.06 46.88 5.14
2347 2358 4.615452 CGGAAGTAATACTGTATCTCCCGC 60.615 50.000 0.00 0.00 0.00 6.13
2348 2359 4.321824 GGAAGTAATACTGTATCTCCCGCC 60.322 50.000 0.00 0.00 0.00 6.13
2349 2360 3.840991 AGTAATACTGTATCTCCCGCCA 58.159 45.455 0.00 0.00 0.00 5.69
2350 2361 4.417437 AGTAATACTGTATCTCCCGCCAT 58.583 43.478 0.00 0.00 0.00 4.40
2351 2362 3.963428 AATACTGTATCTCCCGCCATC 57.037 47.619 0.00 0.00 0.00 3.51
2352 2363 2.375014 TACTGTATCTCCCGCCATCA 57.625 50.000 0.00 0.00 0.00 3.07
2353 2364 1.043816 ACTGTATCTCCCGCCATCAG 58.956 55.000 0.00 0.00 0.00 2.90
2354 2365 1.043816 CTGTATCTCCCGCCATCAGT 58.956 55.000 0.00 0.00 0.00 3.41
2355 2366 0.752658 TGTATCTCCCGCCATCAGTG 59.247 55.000 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 2.976099 TCCTTGTCAGGATCTGCGA 58.024 52.632 0.00 0.00 45.20 5.10
72 73 4.746702 GTGAAATCACCTTCCTTGTCAGGA 60.747 45.833 2.04 0.00 43.15 3.86
127 128 1.927174 GTCACCGAATCAATGAGGTCG 59.073 52.381 10.92 10.92 34.25 4.79
140 141 2.214216 CCCAACTCCCTGTCACCGA 61.214 63.158 0.00 0.00 0.00 4.69
180 181 2.741878 CGAGCATCCACTTACCGGAAAT 60.742 50.000 9.46 0.00 35.77 2.17
181 182 1.404986 CGAGCATCCACTTACCGGAAA 60.405 52.381 9.46 0.00 35.77 3.13
185 186 1.560923 CTTCGAGCATCCACTTACCG 58.439 55.000 0.00 0.00 0.00 4.02
188 189 4.191544 CAAATCCTTCGAGCATCCACTTA 58.808 43.478 0.00 0.00 0.00 2.24
210 211 3.426615 TGTAATGGTTGTGGAATGTCCC 58.573 45.455 0.00 0.00 35.03 4.46
213 214 5.569355 TCTCATGTAATGGTTGTGGAATGT 58.431 37.500 0.00 0.00 46.73 2.71
222 223 7.284034 GGAAATCTGTCATCTCATGTAATGGTT 59.716 37.037 9.25 0.00 46.73 3.67
250 251 4.005650 CTGACTTTGTCATGTACCATGCT 58.994 43.478 0.65 0.00 41.94 3.79
273 274 2.407090 CAGATCGCACAGTGAAAGTCA 58.593 47.619 4.15 0.00 0.00 3.41
334 335 2.300152 TGAAGCTCCAGTCGTTGATTCT 59.700 45.455 0.00 0.00 0.00 2.40
406 407 6.074569 GCGCGCACCACATAAATATTTTTATT 60.075 34.615 29.10 0.00 36.16 1.40
434 435 3.292492 TCGACAGGGAATAGCACTCTA 57.708 47.619 0.00 0.00 0.00 2.43
461 462 7.930217 TTGATATTCAAGTGCTTATTAGCCAC 58.070 34.615 0.47 0.21 37.95 5.01
481 482 2.378038 GCTGGGCAACTTGGATTGATA 58.622 47.619 0.00 0.00 0.00 2.15
484 485 0.901580 AGGCTGGGCAACTTGGATTG 60.902 55.000 0.00 0.00 0.00 2.67
490 491 1.638589 TGGTTATAGGCTGGGCAACTT 59.361 47.619 0.00 0.00 0.00 2.66
568 569 3.019799 AGCTCAAGACCGAGGATCTTA 57.980 47.619 0.00 0.00 34.59 2.10
574 575 2.743636 TAACAAGCTCAAGACCGAGG 57.256 50.000 0.00 0.00 33.36 4.63
597 598 2.288666 TGTCAACTTTCTGTGCCTGTC 58.711 47.619 0.00 0.00 0.00 3.51
606 607 3.620488 TCACCTGCTTTGTCAACTTTCT 58.380 40.909 0.00 0.00 0.00 2.52
619 620 0.820891 CCAACACAAGCTCACCTGCT 60.821 55.000 0.00 0.00 46.40 4.24
696 697 0.179250 CGTCGTTGCCATCGTTTCTG 60.179 55.000 0.00 0.00 0.00 3.02
716 717 5.417580 GCCTTTCATACCACAAATACCAAGA 59.582 40.000 0.00 0.00 0.00 3.02
758 759 3.066621 TGACATGCGCTTTGAGTTTCTTT 59.933 39.130 9.73 0.00 0.00 2.52
777 778 9.069078 CACTGACATATTGATTTGACAATTGAC 57.931 33.333 13.59 6.72 40.36 3.18
778 779 9.012161 TCACTGACATATTGATTTGACAATTGA 57.988 29.630 13.59 0.00 40.36 2.57
779 780 9.285770 CTCACTGACATATTGATTTGACAATTG 57.714 33.333 3.24 3.24 40.36 2.32
780 781 9.234827 TCTCACTGACATATTGATTTGACAATT 57.765 29.630 0.00 0.00 40.36 2.32
781 782 8.797350 TCTCACTGACATATTGATTTGACAAT 57.203 30.769 0.00 0.00 42.17 2.71
782 783 7.335171 CCTCTCACTGACATATTGATTTGACAA 59.665 37.037 0.00 0.00 0.00 3.18
783 784 6.820152 CCTCTCACTGACATATTGATTTGACA 59.180 38.462 0.00 0.00 0.00 3.58
824 825 5.520376 CCTTTGGGCTATAAAAGATGGTG 57.480 43.478 0.00 0.00 35.79 4.17
856 857 2.159282 GGTTTCAGCCAAGCATCTGATG 60.159 50.000 13.26 13.26 38.90 3.07
857 858 2.097825 GGTTTCAGCCAAGCATCTGAT 58.902 47.619 0.00 0.00 38.90 2.90
934 936 1.039856 AACCGCTCCAAATGTTGCTT 58.960 45.000 0.00 0.00 0.00 3.91
950 952 0.981943 CCCTATGGTCCCGGATAACC 59.018 60.000 0.73 8.48 36.03 2.85
1056 1059 6.377996 TGCATCCAACAGTATTAGCAAGATTT 59.622 34.615 0.00 0.00 0.00 2.17
1074 1077 4.650734 TCACATCAAACTTACTGCATCCA 58.349 39.130 0.00 0.00 0.00 3.41
1087 1090 4.078537 ACACCATCCGAATTCACATCAAA 58.921 39.130 6.22 0.00 0.00 2.69
1092 1095 1.349357 TCCACACCATCCGAATTCACA 59.651 47.619 6.22 0.00 0.00 3.58
1105 1108 1.244019 GCATTCACCACCTCCACACC 61.244 60.000 0.00 0.00 0.00 4.16
1152 1155 3.894427 AGTCATCTATGATGGACGAAGCT 59.106 43.478 7.58 0.00 39.30 3.74
1158 1161 8.893219 TGAAATAACAGTCATCTATGATGGAC 57.107 34.615 7.58 5.31 39.30 4.02
1227 1233 4.100035 TCATGAGCCACTCGATTACATTCT 59.900 41.667 0.00 0.00 32.35 2.40
1242 1248 2.409948 ACCTTGCTAGTTCATGAGCC 57.590 50.000 5.87 0.00 37.94 4.70
1266 1272 5.163652 CCAAACACTCGAAGAAGAAAACCTT 60.164 40.000 0.00 0.00 37.93 3.50
1390 1396 1.714899 CGGCGGCAGAAACCCTATTG 61.715 60.000 10.53 0.00 0.00 1.90
1391 1397 1.451387 CGGCGGCAGAAACCCTATT 60.451 57.895 10.53 0.00 0.00 1.73
1392 1398 2.189521 CGGCGGCAGAAACCCTAT 59.810 61.111 10.53 0.00 0.00 2.57
1393 1399 4.770874 GCGGCGGCAGAAACCCTA 62.771 66.667 9.78 0.00 39.62 3.53
1447 1453 3.997064 CTCGGTCCTCGGCTGCAAG 62.997 68.421 0.50 0.00 39.77 4.01
1448 1454 4.069232 CTCGGTCCTCGGCTGCAA 62.069 66.667 0.50 0.00 39.77 4.08
1456 1462 4.131088 GACGTGGCCTCGGTCCTC 62.131 72.222 28.94 14.84 34.94 3.71
1457 1463 4.988716 TGACGTGGCCTCGGTCCT 62.989 66.667 28.94 9.90 34.94 3.85
1458 1464 4.736896 GTGACGTGGCCTCGGTCC 62.737 72.222 28.94 18.01 34.94 4.46
1459 1465 3.916392 CTGTGACGTGGCCTCGGTC 62.916 68.421 28.94 22.29 34.94 4.79
1460 1466 3.991051 CTGTGACGTGGCCTCGGT 61.991 66.667 28.94 15.68 34.94 4.69
1462 1468 4.363990 AGCTGTGACGTGGCCTCG 62.364 66.667 24.76 24.76 0.00 4.63
1463 1469 2.740055 CAGCTGTGACGTGGCCTC 60.740 66.667 5.25 0.00 0.00 4.70
1464 1470 4.320456 CCAGCTGTGACGTGGCCT 62.320 66.667 13.81 0.00 0.00 5.19
1465 1471 4.626081 ACCAGCTGTGACGTGGCC 62.626 66.667 13.81 0.00 34.40 5.36
1466 1472 3.044305 GACCAGCTGTGACGTGGC 61.044 66.667 13.81 0.00 34.40 5.01
1467 1473 2.734723 CGACCAGCTGTGACGTGG 60.735 66.667 13.81 0.53 37.38 4.94
1468 1474 2.027605 ACGACCAGCTGTGACGTG 59.972 61.111 23.21 7.65 36.00 4.49
1469 1475 2.027605 CACGACCAGCTGTGACGT 59.972 61.111 20.19 20.19 38.36 4.34
1470 1476 1.730902 CTCACGACCAGCTGTGACG 60.731 63.158 13.81 17.21 40.02 4.35
1471 1477 2.024319 GCTCACGACCAGCTGTGAC 61.024 63.158 13.81 3.92 40.02 3.67
1472 1478 2.340078 GCTCACGACCAGCTGTGA 59.660 61.111 13.81 8.74 42.49 3.58
1473 1479 2.740055 GGCTCACGACCAGCTGTG 60.740 66.667 13.81 6.81 37.05 3.66
1474 1480 4.008933 GGGCTCACGACCAGCTGT 62.009 66.667 13.81 0.11 38.64 4.40
1477 1483 4.803426 CTCGGGCTCACGACCAGC 62.803 72.222 0.00 0.00 38.74 4.85
1478 1484 4.803426 GCTCGGGCTCACGACCAG 62.803 72.222 0.00 0.00 38.74 4.00
1495 1501 4.742201 CTGTGACGTGGCCTCGGG 62.742 72.222 28.94 11.05 34.94 5.14
1497 1503 4.363990 AGCTGTGACGTGGCCTCG 62.364 66.667 24.76 24.76 0.00 4.63
1498 1504 2.740055 CAGCTGTGACGTGGCCTC 60.740 66.667 5.25 0.00 0.00 4.70
1499 1505 4.320456 CCAGCTGTGACGTGGCCT 62.320 66.667 13.81 0.00 0.00 5.19
1500 1506 4.626081 ACCAGCTGTGACGTGGCC 62.626 66.667 13.81 0.00 34.40 5.36
1501 1507 3.044305 GACCAGCTGTGACGTGGC 61.044 66.667 13.81 0.00 34.40 5.01
1502 1508 2.734723 CGACCAGCTGTGACGTGG 60.735 66.667 13.81 0.53 37.38 4.94
1503 1509 2.027605 ACGACCAGCTGTGACGTG 59.972 61.111 23.21 7.65 36.00 4.49
1504 1510 2.027605 CACGACCAGCTGTGACGT 59.972 61.111 20.19 20.19 38.36 4.34
1505 1511 2.335011 TCACGACCAGCTGTGACG 59.665 61.111 13.81 17.21 40.02 4.35
1533 1539 4.166888 TGATGGCTGCTCCCGCTC 62.167 66.667 0.00 0.00 36.97 5.03
1534 1540 4.479993 GTGATGGCTGCTCCCGCT 62.480 66.667 0.00 0.00 36.97 5.52
1535 1541 4.783621 TGTGATGGCTGCTCCCGC 62.784 66.667 0.00 0.00 0.00 6.13
1536 1542 2.046023 TTGTGATGGCTGCTCCCG 60.046 61.111 0.00 0.00 0.00 5.14
1537 1543 1.751927 CCTTGTGATGGCTGCTCCC 60.752 63.158 0.00 0.00 0.00 4.30
1538 1544 1.751927 CCCTTGTGATGGCTGCTCC 60.752 63.158 0.00 0.00 0.00 4.70
1539 1545 2.413142 GCCCTTGTGATGGCTGCTC 61.413 63.158 0.00 0.00 44.46 4.26
1540 1546 2.362120 GCCCTTGTGATGGCTGCT 60.362 61.111 0.00 0.00 44.46 4.24
1545 1551 2.043652 CCAGGGCCCTTGTGATGG 60.044 66.667 26.10 17.32 0.00 3.51
1546 1552 1.379044 GACCAGGGCCCTTGTGATG 60.379 63.158 32.36 16.29 0.00 3.07
1547 1553 2.971598 CGACCAGGGCCCTTGTGAT 61.972 63.158 32.36 8.85 0.00 3.06
1548 1554 3.636231 CGACCAGGGCCCTTGTGA 61.636 66.667 32.36 0.00 0.00 3.58
1549 1555 3.953775 ACGACCAGGGCCCTTGTG 61.954 66.667 32.36 23.94 0.00 3.33
1550 1556 3.953775 CACGACCAGGGCCCTTGT 61.954 66.667 28.14 28.14 0.00 3.16
1563 1569 4.652131 AAATGTGGGGGCGCACGA 62.652 61.111 10.83 0.00 0.00 4.35
1564 1570 4.114997 GAAATGTGGGGGCGCACG 62.115 66.667 10.83 0.00 0.00 5.34
1565 1571 3.758931 GGAAATGTGGGGGCGCAC 61.759 66.667 10.83 4.83 0.00 5.34
1568 1574 3.600410 AAGGGGAAATGTGGGGGCG 62.600 63.158 0.00 0.00 0.00 6.13
1569 1575 1.229496 AAAGGGGAAATGTGGGGGC 60.229 57.895 0.00 0.00 0.00 5.80
1570 1576 0.116143 TCAAAGGGGAAATGTGGGGG 59.884 55.000 0.00 0.00 0.00 5.40
1571 1577 2.110578 GATCAAAGGGGAAATGTGGGG 58.889 52.381 0.00 0.00 0.00 4.96
1572 1578 2.110578 GGATCAAAGGGGAAATGTGGG 58.889 52.381 0.00 0.00 0.00 4.61
1573 1579 2.497273 GTGGATCAAAGGGGAAATGTGG 59.503 50.000 0.00 0.00 0.00 4.17
1574 1580 2.497273 GGTGGATCAAAGGGGAAATGTG 59.503 50.000 0.00 0.00 0.00 3.21
1575 1581 2.820178 GGTGGATCAAAGGGGAAATGT 58.180 47.619 0.00 0.00 0.00 2.71
1576 1582 1.750778 CGGTGGATCAAAGGGGAAATG 59.249 52.381 0.00 0.00 0.00 2.32
1577 1583 1.638589 TCGGTGGATCAAAGGGGAAAT 59.361 47.619 0.00 0.00 0.00 2.17
1578 1584 1.068948 TCGGTGGATCAAAGGGGAAA 58.931 50.000 0.00 0.00 0.00 3.13
1579 1585 0.326927 GTCGGTGGATCAAAGGGGAA 59.673 55.000 0.00 0.00 0.00 3.97
1580 1586 1.895020 CGTCGGTGGATCAAAGGGGA 61.895 60.000 0.00 0.00 0.00 4.81
1581 1587 1.449601 CGTCGGTGGATCAAAGGGG 60.450 63.158 0.00 0.00 0.00 4.79
1582 1588 2.106683 GCGTCGGTGGATCAAAGGG 61.107 63.158 0.00 0.00 0.00 3.95
1583 1589 0.744414 ATGCGTCGGTGGATCAAAGG 60.744 55.000 0.00 0.00 0.00 3.11
1584 1590 0.374758 CATGCGTCGGTGGATCAAAG 59.625 55.000 0.00 0.00 0.00 2.77
1585 1591 1.024046 CCATGCGTCGGTGGATCAAA 61.024 55.000 0.00 0.00 37.72 2.69
1586 1592 1.449423 CCATGCGTCGGTGGATCAA 60.449 57.895 0.00 0.00 37.72 2.57
1587 1593 2.186644 CCATGCGTCGGTGGATCA 59.813 61.111 0.00 0.00 37.72 2.92
1588 1594 1.883084 GTCCATGCGTCGGTGGATC 60.883 63.158 0.00 0.00 45.57 3.36
1589 1595 2.186903 GTCCATGCGTCGGTGGAT 59.813 61.111 0.00 0.00 45.57 3.41
1590 1596 3.307108 TGTCCATGCGTCGGTGGA 61.307 61.111 0.00 0.00 42.03 4.02
1591 1597 3.118454 GTGTCCATGCGTCGGTGG 61.118 66.667 0.00 0.00 36.82 4.61
1592 1598 3.118454 GGTGTCCATGCGTCGGTG 61.118 66.667 0.00 0.00 0.00 4.94
1593 1599 4.735132 CGGTGTCCATGCGTCGGT 62.735 66.667 0.00 0.00 0.00 4.69
1594 1600 4.429212 TCGGTGTCCATGCGTCGG 62.429 66.667 0.00 0.00 0.00 4.79
1595 1601 3.179265 GTCGGTGTCCATGCGTCG 61.179 66.667 0.00 0.00 0.00 5.12
1596 1602 3.179265 CGTCGGTGTCCATGCGTC 61.179 66.667 0.00 0.00 0.00 5.19
1597 1603 3.626680 CTCGTCGGTGTCCATGCGT 62.627 63.158 0.00 0.00 0.00 5.24
1598 1604 2.880879 CTCGTCGGTGTCCATGCG 60.881 66.667 0.00 0.00 0.00 4.73
1599 1605 3.188786 GCTCGTCGGTGTCCATGC 61.189 66.667 0.00 0.00 0.00 4.06
1600 1606 1.517257 GAGCTCGTCGGTGTCCATG 60.517 63.158 0.00 0.00 0.00 3.66
1601 1607 1.679305 AGAGCTCGTCGGTGTCCAT 60.679 57.895 8.37 0.00 0.00 3.41
1602 1608 2.282251 AGAGCTCGTCGGTGTCCA 60.282 61.111 8.37 0.00 0.00 4.02
1603 1609 2.179517 CAGAGCTCGTCGGTGTCC 59.820 66.667 8.37 0.00 0.00 4.02
1604 1610 1.135731 CTCAGAGCTCGTCGGTGTC 59.864 63.158 8.37 0.00 0.00 3.67
1605 1611 2.336478 CCTCAGAGCTCGTCGGTGT 61.336 63.158 8.37 0.00 0.00 4.16
1606 1612 2.487428 CCTCAGAGCTCGTCGGTG 59.513 66.667 8.37 0.26 0.00 4.94
1607 1613 2.752238 CCCTCAGAGCTCGTCGGT 60.752 66.667 8.37 0.00 0.00 4.69
1608 1614 3.522731 CCCCTCAGAGCTCGTCGG 61.523 72.222 8.37 9.48 0.00 4.79
1609 1615 4.200283 GCCCCTCAGAGCTCGTCG 62.200 72.222 8.37 0.98 0.00 5.12
1610 1616 4.200283 CGCCCCTCAGAGCTCGTC 62.200 72.222 8.37 0.00 0.00 4.20
1631 1637 3.136123 CATGCCGGAGCCCACTTG 61.136 66.667 5.05 0.00 38.69 3.16
1632 1638 3.650950 ACATGCCGGAGCCCACTT 61.651 61.111 5.05 0.00 38.69 3.16
1633 1639 4.415150 CACATGCCGGAGCCCACT 62.415 66.667 5.05 0.00 38.69 4.00
1634 1640 4.408821 TCACATGCCGGAGCCCAC 62.409 66.667 5.05 0.00 38.69 4.61
1635 1641 4.100084 CTCACATGCCGGAGCCCA 62.100 66.667 5.05 0.00 38.69 5.36
1636 1642 4.864334 CCTCACATGCCGGAGCCC 62.864 72.222 5.05 0.00 38.69 5.19
1644 1650 3.446570 GCCAGTGGCCTCACATGC 61.447 66.667 24.53 0.00 45.91 4.06
1654 1660 3.316573 GAGGTCCTTCCGCCAGTGG 62.317 68.421 4.20 4.20 41.99 4.00
1655 1661 2.266055 GAGGTCCTTCCGCCAGTG 59.734 66.667 0.00 0.00 41.99 3.66
1722 1728 0.031857 CATCGGAGCTAGCTCACCAG 59.968 60.000 38.32 26.96 44.40 4.00
1725 1731 1.565305 CAACATCGGAGCTAGCTCAC 58.435 55.000 38.32 27.69 44.40 3.51
1729 1735 2.240500 CGCCAACATCGGAGCTAGC 61.241 63.158 6.62 6.62 0.00 3.42
1757 1763 1.291132 GCAATAGCTCGGACACCTTC 58.709 55.000 0.00 0.00 37.91 3.46
1759 1765 0.978146 AGGCAATAGCTCGGACACCT 60.978 55.000 0.00 0.00 41.70 4.00
1765 1771 1.221414 GCTTGTAGGCAATAGCTCGG 58.779 55.000 0.00 0.00 41.70 4.63
1816 1822 9.245962 GAAATGGATCAATCAATTTGACATCTC 57.754 33.333 9.56 0.00 46.80 2.75
1830 1836 9.811995 CAATTTGATGTACAGAAATGGATCAAT 57.188 29.630 13.63 0.00 31.69 2.57
1834 1840 8.812513 TCTCAATTTGATGTACAGAAATGGAT 57.187 30.769 15.65 2.24 0.00 3.41
1896 1903 4.329801 TGAATCAACCAATTCGACATCTCG 59.670 41.667 0.00 0.00 38.28 4.04
1897 1904 5.801350 TGAATCAACCAATTCGACATCTC 57.199 39.130 0.00 0.00 38.28 2.75
1898 1905 6.764308 AATGAATCAACCAATTCGACATCT 57.236 33.333 0.00 0.00 38.28 2.90
1899 1906 7.756722 AGAAAATGAATCAACCAATTCGACATC 59.243 33.333 0.00 0.00 38.28 3.06
1900 1907 7.543172 CAGAAAATGAATCAACCAATTCGACAT 59.457 33.333 0.00 0.00 38.28 3.06
1901 1908 6.862608 CAGAAAATGAATCAACCAATTCGACA 59.137 34.615 0.00 0.00 38.28 4.35
1905 1912 8.498358 GGAAACAGAAAATGAATCAACCAATTC 58.502 33.333 0.00 0.00 36.40 2.17
1911 1918 8.650714 GCAATAGGAAACAGAAAATGAATCAAC 58.349 33.333 0.00 0.00 0.00 3.18
1924 1931 7.491372 TCACGAATACTTAGCAATAGGAAACAG 59.509 37.037 0.00 0.00 0.00 3.16
1926 1933 7.766219 TCACGAATACTTAGCAATAGGAAAC 57.234 36.000 0.00 0.00 0.00 2.78
1994 2005 9.500785 TCTCAATCATTAACAGAACAATGTACA 57.499 29.630 0.00 0.00 34.45 2.90
2066 2077 3.194116 ACCAACATCATTGTCTTGCATCC 59.806 43.478 0.00 0.00 34.06 3.51
2067 2078 4.171005 CACCAACATCATTGTCTTGCATC 58.829 43.478 0.00 0.00 34.06 3.91
2070 2081 3.648339 ACACCAACATCATTGTCTTGC 57.352 42.857 0.00 0.00 34.06 4.01
2141 2152 8.000709 TCTGTCATTCAGCTTATTTTCCCATAT 58.999 33.333 0.00 0.00 43.32 1.78
2142 2153 7.345691 TCTGTCATTCAGCTTATTTTCCCATA 58.654 34.615 0.00 0.00 43.32 2.74
2143 2154 6.189859 TCTGTCATTCAGCTTATTTTCCCAT 58.810 36.000 0.00 0.00 43.32 4.00
2146 2157 7.540055 CAGTTTCTGTCATTCAGCTTATTTTCC 59.460 37.037 0.00 0.00 43.32 3.13
2154 2165 6.645790 ATTTTCAGTTTCTGTCATTCAGCT 57.354 33.333 0.00 0.00 43.32 4.24
2169 2180 7.961326 AATAAGCCATCCAGTTATTTTCAGT 57.039 32.000 0.00 0.00 0.00 3.41
2173 2184 9.603921 CATGAAAATAAGCCATCCAGTTATTTT 57.396 29.630 10.34 10.34 43.81 1.82
2177 2188 5.655974 TGCATGAAAATAAGCCATCCAGTTA 59.344 36.000 0.00 0.00 0.00 2.24
2182 2193 4.660789 AGTGCATGAAAATAAGCCATCC 57.339 40.909 0.00 0.00 0.00 3.51
2196 2207 0.729116 CCTGCGGAAGTAAGTGCATG 59.271 55.000 0.00 0.00 36.64 4.06
2200 2211 2.969628 ATCTCCTGCGGAAGTAAGTG 57.030 50.000 0.00 0.00 0.00 3.16
2204 2215 5.453339 CCTCATTTAATCTCCTGCGGAAGTA 60.453 44.000 0.00 0.00 0.00 2.24
2206 2217 3.812053 CCTCATTTAATCTCCTGCGGAAG 59.188 47.826 0.00 0.00 0.00 3.46
2211 2222 8.138074 GGAAATAAACCTCATTTAATCTCCTGC 58.862 37.037 0.00 0.00 36.35 4.85
2222 2233 6.131961 AGCTGCTATGGAAATAAACCTCATT 58.868 36.000 0.00 0.00 0.00 2.57
2223 2234 5.699143 AGCTGCTATGGAAATAAACCTCAT 58.301 37.500 0.00 0.00 0.00 2.90
2226 2237 8.539117 AAATAAGCTGCTATGGAAATAAACCT 57.461 30.769 0.90 0.00 0.00 3.50
2229 2240 8.413229 GTGGAAATAAGCTGCTATGGAAATAAA 58.587 33.333 0.90 0.00 0.00 1.40
2237 2248 4.449068 CCTACGTGGAAATAAGCTGCTATG 59.551 45.833 0.90 0.00 38.35 2.23
2239 2250 3.702548 TCCTACGTGGAAATAAGCTGCTA 59.297 43.478 0.90 0.00 42.94 3.49
2252 2263 3.056035 GGATTATAAGGGCTCCTACGTGG 60.056 52.174 0.00 0.00 31.13 4.94
2255 2266 3.442076 AGGGATTATAAGGGCTCCTACG 58.558 50.000 3.46 0.00 31.13 3.51
2256 2267 3.775866 GGAGGGATTATAAGGGCTCCTAC 59.224 52.174 0.00 0.00 31.13 3.18
2257 2268 3.565890 CGGAGGGATTATAAGGGCTCCTA 60.566 52.174 0.00 0.00 31.13 2.94
2258 2269 2.827390 CGGAGGGATTATAAGGGCTCCT 60.827 54.545 0.00 0.00 33.87 3.69
2259 2270 1.555533 CGGAGGGATTATAAGGGCTCC 59.444 57.143 0.00 0.00 0.00 4.70
2260 2271 2.234168 GACGGAGGGATTATAAGGGCTC 59.766 54.545 0.00 0.00 0.00 4.70
2261 2272 2.258109 GACGGAGGGATTATAAGGGCT 58.742 52.381 0.00 0.00 0.00 5.19
2262 2273 1.278413 GGACGGAGGGATTATAAGGGC 59.722 57.143 0.00 0.00 0.00 5.19
2263 2274 2.567615 CAGGACGGAGGGATTATAAGGG 59.432 54.545 0.00 0.00 0.00 3.95
2264 2275 3.240302 ACAGGACGGAGGGATTATAAGG 58.760 50.000 0.00 0.00 0.00 2.69
2265 2276 6.415206 TTTACAGGACGGAGGGATTATAAG 57.585 41.667 0.00 0.00 0.00 1.73
2266 2277 5.221581 GCTTTACAGGACGGAGGGATTATAA 60.222 44.000 0.00 0.00 0.00 0.98
2267 2278 4.282703 GCTTTACAGGACGGAGGGATTATA 59.717 45.833 0.00 0.00 0.00 0.98
2268 2279 3.071167 GCTTTACAGGACGGAGGGATTAT 59.929 47.826 0.00 0.00 0.00 1.28
2269 2280 2.433239 GCTTTACAGGACGGAGGGATTA 59.567 50.000 0.00 0.00 0.00 1.75
2270 2281 1.209747 GCTTTACAGGACGGAGGGATT 59.790 52.381 0.00 0.00 0.00 3.01
2271 2282 0.831307 GCTTTACAGGACGGAGGGAT 59.169 55.000 0.00 0.00 0.00 3.85
2272 2283 0.252103 AGCTTTACAGGACGGAGGGA 60.252 55.000 0.00 0.00 0.00 4.20
2273 2284 0.175989 GAGCTTTACAGGACGGAGGG 59.824 60.000 0.00 0.00 0.00 4.30
2274 2285 0.179134 CGAGCTTTACAGGACGGAGG 60.179 60.000 0.00 0.00 0.00 4.30
2275 2286 0.526662 ACGAGCTTTACAGGACGGAG 59.473 55.000 0.00 0.00 0.00 4.63
2276 2287 0.963962 AACGAGCTTTACAGGACGGA 59.036 50.000 0.00 0.00 0.00 4.69
2277 2288 1.792006 AAACGAGCTTTACAGGACGG 58.208 50.000 0.00 0.00 0.00 4.79
2278 2289 3.306166 CCATAAACGAGCTTTACAGGACG 59.694 47.826 0.00 0.00 29.75 4.79
2279 2290 4.501071 TCCATAAACGAGCTTTACAGGAC 58.499 43.478 0.00 0.00 31.48 3.85
2280 2291 4.811969 TCCATAAACGAGCTTTACAGGA 57.188 40.909 0.00 0.00 32.92 3.86
2281 2292 4.876107 ACATCCATAAACGAGCTTTACAGG 59.124 41.667 0.00 0.00 0.00 4.00
2282 2293 7.653713 AGATACATCCATAAACGAGCTTTACAG 59.346 37.037 0.00 0.00 0.00 2.74
2283 2294 7.497595 AGATACATCCATAAACGAGCTTTACA 58.502 34.615 0.00 0.00 0.00 2.41
2284 2295 7.948278 AGATACATCCATAAACGAGCTTTAC 57.052 36.000 0.00 0.00 0.00 2.01
2285 2296 9.472361 GTTAGATACATCCATAAACGAGCTTTA 57.528 33.333 0.00 0.00 0.00 1.85
2286 2297 7.441458 GGTTAGATACATCCATAAACGAGCTTT 59.559 37.037 0.00 0.00 0.00 3.51
2287 2298 6.929606 GGTTAGATACATCCATAAACGAGCTT 59.070 38.462 0.00 0.00 0.00 3.74
2288 2299 6.041637 TGGTTAGATACATCCATAAACGAGCT 59.958 38.462 0.00 0.00 0.00 4.09
2289 2300 6.220930 TGGTTAGATACATCCATAAACGAGC 58.779 40.000 0.00 0.00 0.00 5.03
2290 2301 6.366332 GCTGGTTAGATACATCCATAAACGAG 59.634 42.308 0.00 0.00 0.00 4.18
2291 2302 6.041637 AGCTGGTTAGATACATCCATAAACGA 59.958 38.462 0.00 0.00 0.00 3.85
2292 2303 6.223852 AGCTGGTTAGATACATCCATAAACG 58.776 40.000 0.00 0.00 0.00 3.60
2293 2304 8.451908 AAAGCTGGTTAGATACATCCATAAAC 57.548 34.615 0.00 0.00 0.00 2.01
2294 2305 8.902806 CAAAAGCTGGTTAGATACATCCATAAA 58.097 33.333 0.00 0.00 0.00 1.40
2295 2306 7.502226 CCAAAAGCTGGTTAGATACATCCATAA 59.498 37.037 0.00 0.00 40.78 1.90
2296 2307 6.998074 CCAAAAGCTGGTTAGATACATCCATA 59.002 38.462 0.00 0.00 40.78 2.74
2297 2308 5.829924 CCAAAAGCTGGTTAGATACATCCAT 59.170 40.000 0.00 0.00 40.78 3.41
2298 2309 5.192927 CCAAAAGCTGGTTAGATACATCCA 58.807 41.667 0.00 0.00 40.78 3.41
2299 2310 4.580580 CCCAAAAGCTGGTTAGATACATCC 59.419 45.833 0.00 0.00 44.76 3.51
2300 2311 5.297029 GTCCCAAAAGCTGGTTAGATACATC 59.703 44.000 0.00 0.00 44.76 3.06
2301 2312 5.193679 GTCCCAAAAGCTGGTTAGATACAT 58.806 41.667 0.00 0.00 44.76 2.29
2302 2313 4.585879 GTCCCAAAAGCTGGTTAGATACA 58.414 43.478 0.00 0.00 44.76 2.29
2303 2314 3.621715 CGTCCCAAAAGCTGGTTAGATAC 59.378 47.826 0.00 0.00 44.76 2.24
2304 2315 3.370103 CCGTCCCAAAAGCTGGTTAGATA 60.370 47.826 0.00 0.00 44.76 1.98
2305 2316 2.618045 CCGTCCCAAAAGCTGGTTAGAT 60.618 50.000 0.00 0.00 44.76 1.98
2306 2317 1.271163 CCGTCCCAAAAGCTGGTTAGA 60.271 52.381 0.00 0.00 44.76 2.10
2307 2318 1.165270 CCGTCCCAAAAGCTGGTTAG 58.835 55.000 0.00 0.00 44.76 2.34
2308 2319 0.766131 TCCGTCCCAAAAGCTGGTTA 59.234 50.000 0.00 0.00 44.76 2.85
2309 2320 0.106419 TTCCGTCCCAAAAGCTGGTT 60.106 50.000 0.00 0.00 44.76 3.67
2310 2321 0.537371 CTTCCGTCCCAAAAGCTGGT 60.537 55.000 0.00 0.00 44.76 4.00
2311 2322 0.537371 ACTTCCGTCCCAAAAGCTGG 60.537 55.000 0.00 0.00 45.97 4.85
2312 2323 2.178912 TACTTCCGTCCCAAAAGCTG 57.821 50.000 0.00 0.00 0.00 4.24
2313 2324 2.943036 TTACTTCCGTCCCAAAAGCT 57.057 45.000 0.00 0.00 0.00 3.74
2314 2325 4.094442 CAGTATTACTTCCGTCCCAAAAGC 59.906 45.833 0.00 0.00 0.00 3.51
2315 2326 5.243207 ACAGTATTACTTCCGTCCCAAAAG 58.757 41.667 0.00 0.00 0.00 2.27
2316 2327 5.231702 ACAGTATTACTTCCGTCCCAAAA 57.768 39.130 0.00 0.00 0.00 2.44
2317 2328 4.895668 ACAGTATTACTTCCGTCCCAAA 57.104 40.909 0.00 0.00 0.00 3.28
2318 2329 5.895534 AGATACAGTATTACTTCCGTCCCAA 59.104 40.000 0.00 0.00 0.00 4.12
2319 2330 5.452255 AGATACAGTATTACTTCCGTCCCA 58.548 41.667 0.00 0.00 0.00 4.37
2320 2331 5.048154 GGAGATACAGTATTACTTCCGTCCC 60.048 48.000 0.00 0.00 0.00 4.46
2321 2332 5.048154 GGGAGATACAGTATTACTTCCGTCC 60.048 48.000 0.00 0.00 0.00 4.79
2322 2333 5.334724 CGGGAGATACAGTATTACTTCCGTC 60.335 48.000 16.29 0.00 42.59 4.79
2323 2334 4.518211 CGGGAGATACAGTATTACTTCCGT 59.482 45.833 16.29 0.00 42.59 4.69
2324 2335 5.044428 CGGGAGATACAGTATTACTTCCG 57.956 47.826 12.49 12.49 42.07 4.30
2325 2336 4.321824 GGCGGGAGATACAGTATTACTTCC 60.322 50.000 0.00 0.00 0.00 3.46
2326 2337 4.280174 TGGCGGGAGATACAGTATTACTTC 59.720 45.833 0.00 0.00 0.00 3.01
2327 2338 4.220724 TGGCGGGAGATACAGTATTACTT 58.779 43.478 0.00 0.00 0.00 2.24
2328 2339 3.840991 TGGCGGGAGATACAGTATTACT 58.159 45.455 0.00 0.00 0.00 2.24
2329 2340 4.219944 TGATGGCGGGAGATACAGTATTAC 59.780 45.833 0.00 0.00 0.00 1.89
2330 2341 4.412843 TGATGGCGGGAGATACAGTATTA 58.587 43.478 0.00 0.00 0.00 0.98
2331 2342 3.239449 TGATGGCGGGAGATACAGTATT 58.761 45.455 0.00 0.00 0.00 1.89
2332 2343 2.828520 CTGATGGCGGGAGATACAGTAT 59.171 50.000 0.00 0.00 0.00 2.12
2333 2344 2.239400 CTGATGGCGGGAGATACAGTA 58.761 52.381 0.00 0.00 0.00 2.74
2334 2345 1.043816 CTGATGGCGGGAGATACAGT 58.956 55.000 0.00 0.00 0.00 3.55
2335 2346 1.043816 ACTGATGGCGGGAGATACAG 58.956 55.000 0.00 0.00 0.00 2.74
2336 2347 0.752658 CACTGATGGCGGGAGATACA 59.247 55.000 0.00 0.00 0.00 2.29
2337 2348 0.034059 CCACTGATGGCGGGAGATAC 59.966 60.000 0.00 0.00 39.82 2.24
2338 2349 0.105709 TCCACTGATGGCGGGAGATA 60.106 55.000 0.00 0.00 46.80 1.98
2339 2350 1.383109 TCCACTGATGGCGGGAGAT 60.383 57.895 0.00 0.00 46.80 2.75
2340 2351 2.038813 TCCACTGATGGCGGGAGA 59.961 61.111 0.00 0.00 46.80 3.71
2341 2352 2.503061 CTCCACTGATGGCGGGAG 59.497 66.667 0.00 0.00 46.80 4.30
2342 2353 2.284625 ACTCCACTGATGGCGGGA 60.285 61.111 0.00 0.00 46.80 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.