Multiple sequence alignment - TraesCS2B01G419800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G419800 chr2B 100.000 2101 0 0 442 2542 601356033 601358133 0.000000e+00 3880
1 TraesCS2B01G419800 chr2B 96.183 262 8 2 2281 2542 78097524 78097265 6.500000e-116 427
2 TraesCS2B01G419800 chr2B 95.802 262 10 1 2281 2542 800511841 800511581 3.020000e-114 422
3 TraesCS2B01G419800 chr2B 100.000 197 0 0 1 197 601355592 601355788 5.170000e-97 364
4 TraesCS2B01G419800 chr2D 91.900 1642 77 23 453 2051 512048393 512050021 0.000000e+00 2244
5 TraesCS2B01G419800 chr2D 93.617 141 8 1 1 140 512048218 512048358 2.560000e-50 209
6 TraesCS2B01G419800 chr2A 88.381 1248 64 28 890 2089 655278826 655280040 0.000000e+00 1426
7 TraesCS2B01G419800 chr2A 93.385 257 13 2 447 699 655278415 655278671 6.640000e-101 377
8 TraesCS2B01G419800 chr2A 95.556 135 4 1 685 817 655278698 655278832 5.510000e-52 215
9 TraesCS2B01G419800 chr2A 87.195 164 17 4 1 163 655278217 655278377 1.550000e-42 183
10 TraesCS2B01G419800 chr1B 97.719 263 5 1 2281 2542 636802566 636802828 3.860000e-123 451
11 TraesCS2B01G419800 chr7B 96.947 262 8 0 2281 2542 175188613 175188352 8.350000e-120 440
12 TraesCS2B01G419800 chr7B 96.183 262 10 0 2281 2542 589922794 589923055 1.810000e-116 429
13 TraesCS2B01G419800 chr7A 96.947 262 8 0 2281 2542 254888725 254888464 8.350000e-120 440
14 TraesCS2B01G419800 chr3B 96.947 262 7 1 2281 2542 828669177 828669437 3.000000e-119 438
15 TraesCS2B01G419800 chr4B 96.565 262 9 0 2281 2542 562876772 562877033 3.880000e-118 435
16 TraesCS2B01G419800 chr5B 96.183 262 10 0 2281 2542 534218029 534218290 1.810000e-116 429


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G419800 chr2B 601355592 601358133 2541 False 2122.00 3880 100.00000 1 2542 2 chr2B.!!$F1 2541
1 TraesCS2B01G419800 chr2D 512048218 512050021 1803 False 1226.50 2244 92.75850 1 2051 2 chr2D.!!$F1 2050
2 TraesCS2B01G419800 chr2A 655278217 655280040 1823 False 550.25 1426 91.12925 1 2089 4 chr2A.!!$F1 2088


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
929 998 1.359848 CCCACGTTTCTCGATCTTGG 58.64 55.0 0.0 0.0 42.86 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2358 2493 0.034089 GCCCAAGGCCTGTCATAAGT 60.034 55.0 5.69 0.0 44.06 2.24 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 96 2.937469 CCATGCTTTGGCGAATGTTA 57.063 45.000 0.00 0.00 39.09 2.41
154 156 9.737427 TTGTACACAAAAATGGTAAACACATAG 57.263 29.630 0.00 0.00 32.11 2.23
157 159 6.325286 ACACAAAAATGGTAAACACATAGGGT 59.675 34.615 0.00 0.00 0.00 4.34
163 165 8.480133 AAATGGTAAACACATAGGGTTTTACA 57.520 30.769 2.42 3.65 39.12 2.41
164 166 7.696992 ATGGTAAACACATAGGGTTTTACAG 57.303 36.000 2.42 0.00 39.12 2.74
166 168 5.416639 GGTAAACACATAGGGTTTTACAGGG 59.583 44.000 2.42 0.00 39.12 4.45
171 173 4.457949 CACATAGGGTTTTACAGGGTGTTC 59.542 45.833 0.00 0.00 0.00 3.18
173 175 3.895704 AGGGTTTTACAGGGTGTTCAT 57.104 42.857 0.00 0.00 0.00 2.57
174 176 6.012333 ACATAGGGTTTTACAGGGTGTTCATA 60.012 38.462 0.00 0.00 0.00 2.15
175 177 4.918588 AGGGTTTTACAGGGTGTTCATAG 58.081 43.478 0.00 0.00 0.00 2.23
176 178 4.600111 AGGGTTTTACAGGGTGTTCATAGA 59.400 41.667 0.00 0.00 0.00 1.98
178 180 5.514310 GGGTTTTACAGGGTGTTCATAGACT 60.514 44.000 0.00 0.00 0.00 3.24
184 186 3.100671 AGGGTGTTCATAGACTCTGTCC 58.899 50.000 0.00 0.00 32.18 4.02
185 187 2.832129 GGGTGTTCATAGACTCTGTCCA 59.168 50.000 0.00 0.00 32.18 4.02
186 188 3.260884 GGGTGTTCATAGACTCTGTCCAA 59.739 47.826 0.00 0.00 32.18 3.53
188 190 4.021016 GGTGTTCATAGACTCTGTCCAACT 60.021 45.833 0.00 0.00 32.18 3.16
189 191 5.511545 GGTGTTCATAGACTCTGTCCAACTT 60.512 44.000 0.00 0.00 32.18 2.66
190 192 6.295123 GGTGTTCATAGACTCTGTCCAACTTA 60.295 42.308 0.00 0.00 32.18 2.24
191 193 7.152645 GTGTTCATAGACTCTGTCCAACTTAA 58.847 38.462 0.00 0.00 32.18 1.85
192 194 7.116519 GTGTTCATAGACTCTGTCCAACTTAAC 59.883 40.741 0.00 0.00 32.18 2.01
196 198 7.656137 TCATAGACTCTGTCCAACTTAACAAAC 59.344 37.037 0.00 0.00 32.18 2.93
469 483 4.995487 CACCTCTAACAACCCTGTAAAGAC 59.005 45.833 0.00 0.00 33.45 3.01
490 504 3.243941 ACTCCGTGTGTGTAGCATTGTTA 60.244 43.478 0.00 0.00 0.00 2.41
554 568 1.549203 GGCACCACTCACCATTCAAT 58.451 50.000 0.00 0.00 0.00 2.57
567 581 8.477256 ACTCACCATTCAATTTTTCTTTTGAGA 58.523 29.630 0.00 0.00 33.68 3.27
621 639 2.956132 TGCCATCCAAGTCTTTTCCAA 58.044 42.857 0.00 0.00 0.00 3.53
857 918 8.091385 TCCTCTAAAATGGAAAGAAAACGTAC 57.909 34.615 0.00 0.00 0.00 3.67
858 919 7.935210 TCCTCTAAAATGGAAAGAAAACGTACT 59.065 33.333 0.00 0.00 0.00 2.73
859 920 8.015658 CCTCTAAAATGGAAAGAAAACGTACTG 58.984 37.037 0.00 0.00 0.00 2.74
860 921 8.441312 TCTAAAATGGAAAGAAAACGTACTGT 57.559 30.769 0.00 0.00 0.00 3.55
865 926 4.512571 TGGAAAGAAAACGTACTGTAAGCC 59.487 41.667 0.54 0.00 37.60 4.35
929 998 1.359848 CCCACGTTTCTCGATCTTGG 58.640 55.000 0.00 0.00 42.86 3.61
1298 1374 2.484203 GGGAGACGAAGACGGTCG 59.516 66.667 1.89 4.18 46.54 4.79
1315 1394 2.556459 CGGCGAGGAGGACGATGAT 61.556 63.158 0.00 0.00 42.31 2.45
1363 1463 2.670592 TGCGACGAGGACTCCGAA 60.671 61.111 0.00 0.00 0.00 4.30
1467 1567 1.079266 GGTGCTGACTGCTGAGAGG 60.079 63.158 5.87 0.00 43.37 3.69
1500 1600 6.687958 GGTCGAGAAATTTTGTTGTTTCGTTA 59.312 34.615 0.00 0.00 38.89 3.18
1577 1694 8.397575 TGTATGCTACAGGAAAATTGTTTGTA 57.602 30.769 0.00 0.00 34.06 2.41
1578 1695 8.293867 TGTATGCTACAGGAAAATTGTTTGTAC 58.706 33.333 0.00 0.00 34.06 2.90
1585 1703 7.703328 ACAGGAAAATTGTTTGTACTGTAGTG 58.297 34.615 0.00 0.00 34.02 2.74
1594 1712 8.905660 TTGTTTGTACTGTAGTGCCTAAATTA 57.094 30.769 0.00 0.00 0.00 1.40
1614 1735 8.816640 AAATTACAGCTTGAATCGTCAATTTT 57.183 26.923 0.00 0.00 42.85 1.82
1670 1795 6.926630 AGGAAAATTGGTACTTTGGCAATA 57.073 33.333 0.00 0.00 0.00 1.90
1807 1938 1.133253 CGCTCCACGCTCATTTGTG 59.867 57.895 0.00 0.00 36.13 3.33
1886 2020 1.080995 TTTTGTGTGCTGGTTTGCGC 61.081 50.000 0.00 0.00 43.07 6.09
1940 2074 1.891150 CTTGTGAAGGGAATGCAAGCT 59.109 47.619 0.00 0.00 31.72 3.74
1971 2105 2.742116 GCTCTACAATGGGCCGGGA 61.742 63.158 2.18 0.00 0.00 5.14
2058 2193 4.235762 CGCCGGTGGACATAGGGG 62.236 72.222 7.26 0.00 0.00 4.79
2059 2194 4.564110 GCCGGTGGACATAGGGGC 62.564 72.222 1.90 0.00 0.00 5.80
2060 2195 3.087253 CCGGTGGACATAGGGGCA 61.087 66.667 0.00 0.00 0.00 5.36
2061 2196 2.505982 CGGTGGACATAGGGGCAG 59.494 66.667 0.00 0.00 0.00 4.85
2062 2197 2.193248 GGTGGACATAGGGGCAGC 59.807 66.667 0.00 0.00 0.00 5.25
2064 2199 1.302949 GTGGACATAGGGGCAGCAA 59.697 57.895 0.00 0.00 0.00 3.91
2065 2200 0.323360 GTGGACATAGGGGCAGCAAA 60.323 55.000 0.00 0.00 0.00 3.68
2066 2201 0.034186 TGGACATAGGGGCAGCAAAG 60.034 55.000 0.00 0.00 0.00 2.77
2067 2202 1.387295 GGACATAGGGGCAGCAAAGC 61.387 60.000 0.00 0.00 0.00 3.51
2068 2203 0.680921 GACATAGGGGCAGCAAAGCA 60.681 55.000 0.00 0.00 35.83 3.91
2075 2210 0.390735 GGGCAGCAAAGCAAAGGATG 60.391 55.000 0.00 0.00 35.83 3.51
2076 2211 0.604578 GGCAGCAAAGCAAAGGATGA 59.395 50.000 0.00 0.00 35.83 2.92
2082 2217 2.796593 GCAAAGCAAAGGATGACAACAC 59.203 45.455 0.00 0.00 0.00 3.32
2089 2224 2.677003 GGATGACAACACGCGGTGG 61.677 63.158 12.47 5.76 37.94 4.61
2090 2225 1.959226 GATGACAACACGCGGTGGT 60.959 57.895 12.47 9.44 37.94 4.16
2091 2226 0.668096 GATGACAACACGCGGTGGTA 60.668 55.000 12.47 0.00 37.94 3.25
2092 2227 0.669318 ATGACAACACGCGGTGGTAG 60.669 55.000 12.47 3.23 37.94 3.18
2093 2228 1.007038 GACAACACGCGGTGGTAGA 60.007 57.895 12.47 0.00 37.94 2.59
2094 2229 1.006571 ACAACACGCGGTGGTAGAG 60.007 57.895 12.47 2.55 37.94 2.43
2095 2230 1.287815 CAACACGCGGTGGTAGAGA 59.712 57.895 12.47 0.00 37.94 3.10
2096 2231 0.108804 CAACACGCGGTGGTAGAGAT 60.109 55.000 12.47 0.00 37.94 2.75
2097 2232 0.606604 AACACGCGGTGGTAGAGATT 59.393 50.000 12.47 0.00 37.94 2.40
2098 2233 0.606604 ACACGCGGTGGTAGAGATTT 59.393 50.000 12.47 0.00 37.94 2.17
2099 2234 1.001633 ACACGCGGTGGTAGAGATTTT 59.998 47.619 12.47 0.00 37.94 1.82
2100 2235 2.073816 CACGCGGTGGTAGAGATTTTT 58.926 47.619 12.47 0.00 0.00 1.94
2140 2275 9.256477 TGGAACACTATGATTCGATACATTAAC 57.744 33.333 9.48 0.00 0.00 2.01
2141 2276 8.709646 GGAACACTATGATTCGATACATTAACC 58.290 37.037 9.48 0.00 0.00 2.85
2142 2277 9.256477 GAACACTATGATTCGATACATTAACCA 57.744 33.333 9.48 0.00 0.00 3.67
2143 2278 8.818141 ACACTATGATTCGATACATTAACCAG 57.182 34.615 9.48 4.61 0.00 4.00
2144 2279 7.872993 ACACTATGATTCGATACATTAACCAGG 59.127 37.037 9.48 0.00 0.00 4.45
2145 2280 7.872993 CACTATGATTCGATACATTAACCAGGT 59.127 37.037 9.48 0.00 0.00 4.00
2146 2281 8.088981 ACTATGATTCGATACATTAACCAGGTC 58.911 37.037 9.48 0.00 0.00 3.85
2147 2282 5.607477 TGATTCGATACATTAACCAGGTCC 58.393 41.667 0.00 0.00 0.00 4.46
2148 2283 5.129650 TGATTCGATACATTAACCAGGTCCA 59.870 40.000 0.00 0.00 0.00 4.02
2149 2284 4.665833 TCGATACATTAACCAGGTCCAG 57.334 45.455 0.00 0.00 0.00 3.86
2150 2285 3.131396 CGATACATTAACCAGGTCCAGC 58.869 50.000 0.00 0.00 0.00 4.85
2151 2286 3.477530 GATACATTAACCAGGTCCAGCC 58.522 50.000 0.00 0.00 37.58 4.85
2152 2287 1.072266 ACATTAACCAGGTCCAGCCA 58.928 50.000 0.00 0.00 40.61 4.75
2153 2288 1.004745 ACATTAACCAGGTCCAGCCAG 59.995 52.381 0.00 0.00 40.61 4.85
2155 2290 2.137177 TTAACCAGGTCCAGCCAGGC 62.137 60.000 1.84 1.84 46.95 4.85
2156 2291 4.990910 ACCAGGTCCAGCCAGGCT 62.991 66.667 8.70 8.70 46.95 4.58
2176 2311 3.353600 TCGCCCGTCGAACACTTA 58.646 55.556 0.00 0.00 45.36 2.24
2177 2312 1.081242 TCGCCCGTCGAACACTTAC 60.081 57.895 0.00 0.00 45.36 2.34
2178 2313 1.372004 CGCCCGTCGAACACTTACA 60.372 57.895 0.00 0.00 41.67 2.41
2179 2314 0.734942 CGCCCGTCGAACACTTACAT 60.735 55.000 0.00 0.00 41.67 2.29
2180 2315 0.997196 GCCCGTCGAACACTTACATC 59.003 55.000 0.00 0.00 0.00 3.06
2181 2316 1.670674 GCCCGTCGAACACTTACATCA 60.671 52.381 0.00 0.00 0.00 3.07
2182 2317 2.888594 CCCGTCGAACACTTACATCAT 58.111 47.619 0.00 0.00 0.00 2.45
2183 2318 3.735820 GCCCGTCGAACACTTACATCATA 60.736 47.826 0.00 0.00 0.00 2.15
2184 2319 4.617959 CCCGTCGAACACTTACATCATAT 58.382 43.478 0.00 0.00 0.00 1.78
2185 2320 4.444388 CCCGTCGAACACTTACATCATATG 59.556 45.833 0.00 0.00 0.00 1.78
2186 2321 4.444388 CCGTCGAACACTTACATCATATGG 59.556 45.833 2.13 0.00 33.60 2.74
2187 2322 4.444388 CGTCGAACACTTACATCATATGGG 59.556 45.833 2.13 0.00 33.60 4.00
2188 2323 5.597806 GTCGAACACTTACATCATATGGGA 58.402 41.667 2.13 0.00 33.60 4.37
2189 2324 5.692204 GTCGAACACTTACATCATATGGGAG 59.308 44.000 2.13 0.00 33.60 4.30
2190 2325 4.991056 CGAACACTTACATCATATGGGAGG 59.009 45.833 2.13 0.00 33.60 4.30
2191 2326 4.982241 ACACTTACATCATATGGGAGGG 57.018 45.455 2.13 0.00 33.60 4.30
2192 2327 3.073062 ACACTTACATCATATGGGAGGGC 59.927 47.826 2.13 0.00 33.60 5.19
2193 2328 3.328931 CACTTACATCATATGGGAGGGCT 59.671 47.826 2.13 0.00 33.60 5.19
2194 2329 3.983410 ACTTACATCATATGGGAGGGCTT 59.017 43.478 2.13 0.00 33.60 4.35
2195 2330 4.042187 ACTTACATCATATGGGAGGGCTTC 59.958 45.833 2.13 0.00 33.60 3.86
2196 2331 2.421725 ACATCATATGGGAGGGCTTCA 58.578 47.619 2.13 0.00 33.60 3.02
2197 2332 2.785269 ACATCATATGGGAGGGCTTCAA 59.215 45.455 2.13 0.00 33.60 2.69
2198 2333 3.181436 ACATCATATGGGAGGGCTTCAAG 60.181 47.826 2.13 0.00 33.60 3.02
2199 2334 2.492025 TCATATGGGAGGGCTTCAAGT 58.508 47.619 2.13 0.00 0.00 3.16
2200 2335 2.439507 TCATATGGGAGGGCTTCAAGTC 59.560 50.000 2.13 0.00 0.00 3.01
2201 2336 1.965414 TATGGGAGGGCTTCAAGTCA 58.035 50.000 0.00 0.00 0.00 3.41
2202 2337 1.302907 ATGGGAGGGCTTCAAGTCAT 58.697 50.000 0.00 0.00 0.00 3.06
2203 2338 1.965414 TGGGAGGGCTTCAAGTCATA 58.035 50.000 0.00 0.00 0.00 2.15
2204 2339 2.492025 TGGGAGGGCTTCAAGTCATAT 58.508 47.619 0.00 0.00 0.00 1.78
2205 2340 2.439507 TGGGAGGGCTTCAAGTCATATC 59.560 50.000 0.00 0.00 0.00 1.63
2206 2341 2.708325 GGGAGGGCTTCAAGTCATATCT 59.292 50.000 0.00 0.00 0.00 1.98
2207 2342 3.244387 GGGAGGGCTTCAAGTCATATCTC 60.244 52.174 0.00 0.00 0.00 2.75
2208 2343 3.244387 GGAGGGCTTCAAGTCATATCTCC 60.244 52.174 0.00 0.00 0.00 3.71
2209 2344 2.708325 AGGGCTTCAAGTCATATCTCCC 59.292 50.000 0.00 0.00 0.00 4.30
2210 2345 2.548920 GGGCTTCAAGTCATATCTCCCG 60.549 54.545 0.00 0.00 0.00 5.14
2211 2346 2.365617 GGCTTCAAGTCATATCTCCCGA 59.634 50.000 0.00 0.00 0.00 5.14
2212 2347 3.181465 GGCTTCAAGTCATATCTCCCGAA 60.181 47.826 0.00 0.00 0.00 4.30
2213 2348 3.804873 GCTTCAAGTCATATCTCCCGAAC 59.195 47.826 0.00 0.00 0.00 3.95
2214 2349 4.680708 GCTTCAAGTCATATCTCCCGAACA 60.681 45.833 0.00 0.00 0.00 3.18
2215 2350 5.414789 TTCAAGTCATATCTCCCGAACAA 57.585 39.130 0.00 0.00 0.00 2.83
2216 2351 4.755411 TCAAGTCATATCTCCCGAACAAC 58.245 43.478 0.00 0.00 0.00 3.32
2217 2352 3.438297 AGTCATATCTCCCGAACAACG 57.562 47.619 0.00 0.00 42.18 4.10
2218 2353 3.021695 AGTCATATCTCCCGAACAACGA 58.978 45.455 0.00 0.00 45.77 3.85
2219 2354 3.066900 AGTCATATCTCCCGAACAACGAG 59.933 47.826 0.00 0.00 45.77 4.18
2220 2355 2.361119 TCATATCTCCCGAACAACGAGG 59.639 50.000 0.00 0.00 45.77 4.63
2221 2356 0.458669 TATCTCCCGAACAACGAGGC 59.541 55.000 0.00 0.00 45.77 4.70
2222 2357 2.558554 ATCTCCCGAACAACGAGGCG 62.559 60.000 0.00 0.00 45.77 5.52
2225 2360 3.041940 CCGAACAACGAGGCGCTT 61.042 61.111 7.64 0.00 45.77 4.68
2226 2361 2.604174 CCGAACAACGAGGCGCTTT 61.604 57.895 7.64 0.00 45.77 3.51
2227 2362 1.438710 CGAACAACGAGGCGCTTTG 60.439 57.895 7.64 6.21 45.77 2.77
2228 2363 1.725973 GAACAACGAGGCGCTTTGC 60.726 57.895 7.64 0.00 45.38 3.68
2229 2364 2.117941 GAACAACGAGGCGCTTTGCT 62.118 55.000 7.64 0.00 45.43 3.91
2230 2365 2.117941 AACAACGAGGCGCTTTGCTC 62.118 55.000 7.64 4.10 45.43 4.26
2231 2366 3.050275 AACGAGGCGCTTTGCTCC 61.050 61.111 7.64 0.00 45.43 4.70
2232 2367 3.825160 AACGAGGCGCTTTGCTCCA 62.825 57.895 7.64 0.00 45.43 3.86
2233 2368 3.049674 CGAGGCGCTTTGCTCCAA 61.050 61.111 7.64 0.00 45.43 3.53
2234 2369 2.616330 CGAGGCGCTTTGCTCCAAA 61.616 57.895 7.64 0.00 45.43 3.28
2235 2370 1.659794 GAGGCGCTTTGCTCCAAAA 59.340 52.632 7.64 0.00 45.43 2.44
2236 2371 0.387750 GAGGCGCTTTGCTCCAAAAG 60.388 55.000 7.64 0.00 45.43 2.27
2246 2381 1.208614 CTCCAAAAGCAGCGACAGC 59.791 57.895 0.00 0.00 45.58 4.40
2260 2395 4.542662 GCGACAGCATGAACTAAATCAT 57.457 40.909 0.00 0.00 44.35 2.45
2261 2396 4.913376 GCGACAGCATGAACTAAATCATT 58.087 39.130 0.00 0.00 44.35 2.57
2262 2397 6.048073 GCGACAGCATGAACTAAATCATTA 57.952 37.500 0.00 0.00 44.35 1.90
2263 2398 5.904080 GCGACAGCATGAACTAAATCATTAC 59.096 40.000 0.00 0.00 44.35 1.89
2264 2399 6.456853 GCGACAGCATGAACTAAATCATTACA 60.457 38.462 0.00 0.00 44.35 2.41
2265 2400 7.463544 CGACAGCATGAACTAAATCATTACAA 58.536 34.615 0.00 0.00 39.69 2.41
2266 2401 7.426456 CGACAGCATGAACTAAATCATTACAAC 59.574 37.037 0.00 0.00 39.69 3.32
2267 2402 7.538575 ACAGCATGAACTAAATCATTACAACC 58.461 34.615 0.00 0.00 39.69 3.77
2268 2403 6.974622 CAGCATGAACTAAATCATTACAACCC 59.025 38.462 0.00 0.00 39.69 4.11
2269 2404 6.096846 AGCATGAACTAAATCATTACAACCCC 59.903 38.462 0.00 0.00 37.96 4.95
2270 2405 6.096846 GCATGAACTAAATCATTACAACCCCT 59.903 38.462 0.00 0.00 37.96 4.79
2271 2406 7.363793 GCATGAACTAAATCATTACAACCCCTT 60.364 37.037 0.00 0.00 37.96 3.95
2272 2407 7.461182 TGAACTAAATCATTACAACCCCTTG 57.539 36.000 0.00 0.00 0.00 3.61
2273 2408 6.435904 TGAACTAAATCATTACAACCCCTTGG 59.564 38.462 0.00 0.00 37.80 3.61
2284 2419 3.339547 CCCCTTGGGGCATATTACG 57.660 57.895 12.40 0.00 42.67 3.18
2285 2420 0.893727 CCCCTTGGGGCATATTACGC 60.894 60.000 12.40 0.00 42.67 4.42
2286 2421 0.179004 CCCTTGGGGCATATTACGCA 60.179 55.000 0.00 0.00 35.35 5.24
2287 2422 1.686355 CCTTGGGGCATATTACGCAA 58.314 50.000 5.96 5.96 37.82 4.85
2288 2423 2.238521 CCTTGGGGCATATTACGCAAT 58.761 47.619 6.41 0.00 38.57 3.56
2289 2424 2.228822 CCTTGGGGCATATTACGCAATC 59.771 50.000 6.41 0.00 38.57 2.67
2290 2425 1.904287 TGGGGCATATTACGCAATCC 58.096 50.000 0.00 0.00 0.00 3.01
2291 2426 1.173913 GGGGCATATTACGCAATCCC 58.826 55.000 0.00 0.00 0.00 3.85
2292 2427 0.802494 GGGCATATTACGCAATCCCG 59.198 55.000 0.00 0.00 0.00 5.14
2293 2428 0.802494 GGCATATTACGCAATCCCGG 59.198 55.000 0.00 0.00 0.00 5.73
2294 2429 0.802494 GCATATTACGCAATCCCGGG 59.198 55.000 16.85 16.85 0.00 5.73
2295 2430 1.609580 GCATATTACGCAATCCCGGGA 60.610 52.381 29.18 29.18 0.00 5.14
2296 2431 2.073816 CATATTACGCAATCCCGGGAC 58.926 52.381 29.69 13.14 0.00 4.46
2297 2432 0.393820 TATTACGCAATCCCGGGACC 59.606 55.000 29.69 16.49 0.00 4.46
2298 2433 2.653953 ATTACGCAATCCCGGGACCG 62.654 60.000 29.69 28.88 39.44 4.79
2301 2436 3.857038 GCAATCCCGGGACCGCTA 61.857 66.667 30.16 9.17 38.24 4.26
2302 2437 3.148084 CAATCCCGGGACCGCTAT 58.852 61.111 29.69 5.54 38.24 2.97
2303 2438 1.004918 CAATCCCGGGACCGCTATC 60.005 63.158 29.69 0.00 38.24 2.08
2304 2439 1.458777 AATCCCGGGACCGCTATCA 60.459 57.895 29.69 0.00 38.24 2.15
2305 2440 1.755393 AATCCCGGGACCGCTATCAC 61.755 60.000 29.69 0.00 38.24 3.06
2306 2441 3.925090 CCCGGGACCGCTATCACC 61.925 72.222 18.48 0.00 38.24 4.02
2307 2442 3.151710 CCGGGACCGCTATCACCA 61.152 66.667 4.98 0.00 38.24 4.17
2308 2443 2.417516 CGGGACCGCTATCACCAG 59.582 66.667 0.00 0.00 0.00 4.00
2309 2444 2.109181 GGGACCGCTATCACCAGC 59.891 66.667 0.00 0.00 38.23 4.85
2327 2462 4.838959 GTTTTCGACCCACATGCG 57.161 55.556 0.00 0.00 0.00 4.73
2328 2463 1.946267 GTTTTCGACCCACATGCGT 59.054 52.632 0.00 0.00 0.00 5.24
2329 2464 0.110373 GTTTTCGACCCACATGCGTC 60.110 55.000 0.00 0.00 0.00 5.19
2330 2465 0.533085 TTTTCGACCCACATGCGTCA 60.533 50.000 8.41 0.00 0.00 4.35
2331 2466 0.533085 TTTCGACCCACATGCGTCAA 60.533 50.000 8.41 1.22 0.00 3.18
2332 2467 0.321210 TTCGACCCACATGCGTCAAT 60.321 50.000 8.41 0.00 0.00 2.57
2333 2468 0.739462 TCGACCCACATGCGTCAATC 60.739 55.000 8.41 0.00 0.00 2.67
2334 2469 1.018752 CGACCCACATGCGTCAATCA 61.019 55.000 8.41 0.00 0.00 2.57
2335 2470 0.729116 GACCCACATGCGTCAATCAG 59.271 55.000 0.00 0.00 0.00 2.90
2336 2471 0.324614 ACCCACATGCGTCAATCAGA 59.675 50.000 0.00 0.00 0.00 3.27
2337 2472 0.729116 CCCACATGCGTCAATCAGAC 59.271 55.000 0.00 0.00 44.02 3.51
2338 2473 0.729116 CCACATGCGTCAATCAGACC 59.271 55.000 0.00 0.00 44.66 3.85
2339 2474 0.729116 CACATGCGTCAATCAGACCC 59.271 55.000 0.00 0.00 44.66 4.46
2340 2475 0.324614 ACATGCGTCAATCAGACCCA 59.675 50.000 0.00 0.00 44.66 4.51
2341 2476 1.271325 ACATGCGTCAATCAGACCCAA 60.271 47.619 0.00 0.00 44.66 4.12
2342 2477 1.131126 CATGCGTCAATCAGACCCAAC 59.869 52.381 0.00 0.00 44.66 3.77
2343 2478 0.605319 TGCGTCAATCAGACCCAACC 60.605 55.000 0.00 0.00 44.66 3.77
2344 2479 1.635663 GCGTCAATCAGACCCAACCG 61.636 60.000 0.00 0.00 44.66 4.44
2345 2480 1.019278 CGTCAATCAGACCCAACCGG 61.019 60.000 0.00 0.00 44.66 5.28
2346 2481 0.323629 GTCAATCAGACCCAACCGGA 59.676 55.000 9.46 0.00 41.56 5.14
2347 2482 0.613260 TCAATCAGACCCAACCGGAG 59.387 55.000 9.46 0.00 34.64 4.63
2348 2483 0.613260 CAATCAGACCCAACCGGAGA 59.387 55.000 9.46 0.00 34.64 3.71
2349 2484 0.905357 AATCAGACCCAACCGGAGAG 59.095 55.000 9.46 0.00 34.64 3.20
2350 2485 1.617947 ATCAGACCCAACCGGAGAGC 61.618 60.000 9.46 0.00 34.64 4.09
2351 2486 2.203788 AGACCCAACCGGAGAGCA 60.204 61.111 9.46 0.00 34.64 4.26
2352 2487 1.841556 AGACCCAACCGGAGAGCAA 60.842 57.895 9.46 0.00 34.64 3.91
2353 2488 1.671379 GACCCAACCGGAGAGCAAC 60.671 63.158 9.46 0.00 34.64 4.17
2354 2489 2.391724 GACCCAACCGGAGAGCAACA 62.392 60.000 9.46 0.00 34.64 3.33
2355 2490 1.966451 CCCAACCGGAGAGCAACAC 60.966 63.158 9.46 0.00 0.00 3.32
2356 2491 1.966451 CCAACCGGAGAGCAACACC 60.966 63.158 9.46 0.00 0.00 4.16
2363 2498 2.674796 GGAGAGCAACACCGACTTAT 57.325 50.000 0.00 0.00 0.00 1.73
2364 2499 2.271800 GGAGAGCAACACCGACTTATG 58.728 52.381 0.00 0.00 0.00 1.90
2365 2500 2.094182 GGAGAGCAACACCGACTTATGA 60.094 50.000 0.00 0.00 0.00 2.15
2366 2501 2.924290 GAGAGCAACACCGACTTATGAC 59.076 50.000 0.00 0.00 0.00 3.06
2367 2502 2.299013 AGAGCAACACCGACTTATGACA 59.701 45.455 0.00 0.00 0.00 3.58
2368 2503 2.668457 GAGCAACACCGACTTATGACAG 59.332 50.000 0.00 0.00 0.00 3.51
2369 2504 1.732259 GCAACACCGACTTATGACAGG 59.268 52.381 0.00 0.00 0.00 4.00
2370 2505 1.732259 CAACACCGACTTATGACAGGC 59.268 52.381 0.00 0.00 0.00 4.85
2371 2506 0.249398 ACACCGACTTATGACAGGCC 59.751 55.000 0.00 0.00 0.00 5.19
2372 2507 0.537188 CACCGACTTATGACAGGCCT 59.463 55.000 0.00 0.00 0.00 5.19
2373 2508 1.066143 CACCGACTTATGACAGGCCTT 60.066 52.381 0.00 0.00 0.00 4.35
2374 2509 1.066143 ACCGACTTATGACAGGCCTTG 60.066 52.381 0.00 0.66 0.00 3.61
2375 2510 1.656652 CGACTTATGACAGGCCTTGG 58.343 55.000 0.00 0.00 0.00 3.61
2376 2511 1.743772 CGACTTATGACAGGCCTTGGG 60.744 57.143 0.00 0.00 0.00 4.12
2402 2537 3.577389 CCCCCAAAAGACTAGCCTG 57.423 57.895 0.00 0.00 0.00 4.85
2403 2538 0.698818 CCCCCAAAAGACTAGCCTGT 59.301 55.000 0.00 0.00 0.00 4.00
2404 2539 1.075536 CCCCCAAAAGACTAGCCTGTT 59.924 52.381 0.00 0.00 0.00 3.16
2405 2540 2.307686 CCCCCAAAAGACTAGCCTGTTA 59.692 50.000 0.00 0.00 0.00 2.41
2406 2541 3.610911 CCCCAAAAGACTAGCCTGTTAG 58.389 50.000 0.00 0.00 0.00 2.34
2407 2542 3.610911 CCCAAAAGACTAGCCTGTTAGG 58.389 50.000 0.00 0.00 38.80 2.69
2408 2543 3.263425 CCCAAAAGACTAGCCTGTTAGGA 59.737 47.826 0.00 0.00 37.67 2.94
2409 2544 4.508662 CCAAAAGACTAGCCTGTTAGGAG 58.491 47.826 0.00 0.00 37.67 3.69
2410 2545 4.508662 CAAAAGACTAGCCTGTTAGGAGG 58.491 47.826 0.00 0.00 37.67 4.30
2411 2546 2.463047 AGACTAGCCTGTTAGGAGGG 57.537 55.000 0.00 0.00 37.67 4.30
2412 2547 1.062810 AGACTAGCCTGTTAGGAGGGG 60.063 57.143 0.00 0.00 37.67 4.79
2413 2548 1.016415 ACTAGCCTGTTAGGAGGGGA 58.984 55.000 0.00 0.00 37.67 4.81
2414 2549 1.343176 ACTAGCCTGTTAGGAGGGGAC 60.343 57.143 0.00 0.00 37.67 4.46
2415 2550 0.714180 TAGCCTGTTAGGAGGGGACA 59.286 55.000 0.00 0.00 37.67 4.02
2416 2551 0.910088 AGCCTGTTAGGAGGGGACAC 60.910 60.000 0.00 0.00 37.67 3.67
2417 2552 1.911702 GCCTGTTAGGAGGGGACACC 61.912 65.000 0.00 0.00 37.67 4.16
2428 2563 3.094498 GGACACCCCCGCCCTTAT 61.094 66.667 0.00 0.00 0.00 1.73
2429 2564 1.767268 GGACACCCCCGCCCTTATA 60.767 63.158 0.00 0.00 0.00 0.98
2430 2565 1.347243 GGACACCCCCGCCCTTATAA 61.347 60.000 0.00 0.00 0.00 0.98
2431 2566 0.108019 GACACCCCCGCCCTTATAAG 59.892 60.000 5.43 5.43 0.00 1.73
2432 2567 0.622446 ACACCCCCGCCCTTATAAGT 60.622 55.000 11.50 0.00 0.00 2.24
2433 2568 0.108019 CACCCCCGCCCTTATAAGTC 59.892 60.000 11.50 2.37 0.00 3.01
2434 2569 1.370064 CCCCCGCCCTTATAAGTCG 59.630 63.158 11.50 12.97 0.00 4.18
2435 2570 1.405272 CCCCCGCCCTTATAAGTCGT 61.405 60.000 11.50 0.00 0.00 4.34
2436 2571 0.249741 CCCCGCCCTTATAAGTCGTG 60.250 60.000 11.50 7.40 0.00 4.35
2437 2572 0.462789 CCCGCCCTTATAAGTCGTGT 59.537 55.000 11.50 0.00 0.00 4.49
2438 2573 1.134610 CCCGCCCTTATAAGTCGTGTT 60.135 52.381 11.50 0.00 0.00 3.32
2439 2574 2.101249 CCCGCCCTTATAAGTCGTGTTA 59.899 50.000 11.50 0.00 0.00 2.41
2440 2575 3.243975 CCCGCCCTTATAAGTCGTGTTAT 60.244 47.826 11.50 0.00 0.00 1.89
2441 2576 4.374399 CCGCCCTTATAAGTCGTGTTATT 58.626 43.478 11.50 0.00 0.00 1.40
2442 2577 4.812626 CCGCCCTTATAAGTCGTGTTATTT 59.187 41.667 11.50 0.00 0.00 1.40
2443 2578 5.050567 CCGCCCTTATAAGTCGTGTTATTTC 60.051 44.000 11.50 0.00 0.00 2.17
2444 2579 5.751990 CGCCCTTATAAGTCGTGTTATTTCT 59.248 40.000 11.50 0.00 0.00 2.52
2445 2580 6.074463 CGCCCTTATAAGTCGTGTTATTTCTC 60.074 42.308 11.50 0.00 0.00 2.87
2446 2581 6.202379 GCCCTTATAAGTCGTGTTATTTCTCC 59.798 42.308 11.50 0.00 0.00 3.71
2447 2582 6.704937 CCCTTATAAGTCGTGTTATTTCTCCC 59.295 42.308 11.50 0.00 0.00 4.30
2448 2583 6.704937 CCTTATAAGTCGTGTTATTTCTCCCC 59.295 42.308 11.50 0.00 0.00 4.81
2449 2584 3.345508 AAGTCGTGTTATTTCTCCCCC 57.654 47.619 0.00 0.00 0.00 5.40
2472 2607 3.751518 ACAACTGATGTGGGACTAAACC 58.248 45.455 0.00 0.00 41.93 3.27
2484 2619 3.353557 GGACTAAACCCAACAATCTCCC 58.646 50.000 0.00 0.00 0.00 4.30
2485 2620 3.353557 GACTAAACCCAACAATCTCCCC 58.646 50.000 0.00 0.00 0.00 4.81
2486 2621 2.042569 ACTAAACCCAACAATCTCCCCC 59.957 50.000 0.00 0.00 0.00 5.40
2487 2622 1.167033 AAACCCAACAATCTCCCCCT 58.833 50.000 0.00 0.00 0.00 4.79
2488 2623 0.704664 AACCCAACAATCTCCCCCTC 59.295 55.000 0.00 0.00 0.00 4.30
2489 2624 0.477597 ACCCAACAATCTCCCCCTCA 60.478 55.000 0.00 0.00 0.00 3.86
2490 2625 0.034089 CCCAACAATCTCCCCCTCAC 60.034 60.000 0.00 0.00 0.00 3.51
2491 2626 0.698238 CCAACAATCTCCCCCTCACA 59.302 55.000 0.00 0.00 0.00 3.58
2492 2627 1.614317 CCAACAATCTCCCCCTCACAC 60.614 57.143 0.00 0.00 0.00 3.82
2493 2628 1.073763 CAACAATCTCCCCCTCACACA 59.926 52.381 0.00 0.00 0.00 3.72
2494 2629 1.673767 ACAATCTCCCCCTCACACAT 58.326 50.000 0.00 0.00 0.00 3.21
2495 2630 1.561542 ACAATCTCCCCCTCACACATC 59.438 52.381 0.00 0.00 0.00 3.06
2496 2631 0.833287 AATCTCCCCCTCACACATCG 59.167 55.000 0.00 0.00 0.00 3.84
2497 2632 1.050988 ATCTCCCCCTCACACATCGG 61.051 60.000 0.00 0.00 0.00 4.18
2498 2633 1.990060 CTCCCCCTCACACATCGGT 60.990 63.158 0.00 0.00 0.00 4.69
2499 2634 1.961180 CTCCCCCTCACACATCGGTC 61.961 65.000 0.00 0.00 0.00 4.79
2500 2635 2.290287 CCCCCTCACACATCGGTCA 61.290 63.158 0.00 0.00 0.00 4.02
2501 2636 1.626356 CCCCCTCACACATCGGTCAT 61.626 60.000 0.00 0.00 0.00 3.06
2502 2637 0.179073 CCCCTCACACATCGGTCATC 60.179 60.000 0.00 0.00 0.00 2.92
2503 2638 0.179073 CCCTCACACATCGGTCATCC 60.179 60.000 0.00 0.00 0.00 3.51
2504 2639 0.536724 CCTCACACATCGGTCATCCA 59.463 55.000 0.00 0.00 0.00 3.41
2505 2640 1.139654 CCTCACACATCGGTCATCCAT 59.860 52.381 0.00 0.00 0.00 3.41
2506 2641 2.207590 CTCACACATCGGTCATCCATG 58.792 52.381 0.00 0.00 0.00 3.66
2507 2642 1.134431 TCACACATCGGTCATCCATGG 60.134 52.381 4.97 4.97 31.40 3.66
2508 2643 0.181114 ACACATCGGTCATCCATGGG 59.819 55.000 13.02 0.00 34.32 4.00
2509 2644 1.149174 ACATCGGTCATCCATGGGC 59.851 57.895 13.02 0.00 31.40 5.36
2510 2645 1.601759 CATCGGTCATCCATGGGCC 60.602 63.158 13.02 8.55 0.00 5.80
2511 2646 2.833913 ATCGGTCATCCATGGGCCC 61.834 63.158 17.59 17.59 0.00 5.80
2512 2647 4.935495 CGGTCATCCATGGGCCCG 62.935 72.222 19.37 14.09 0.00 6.13
2514 2649 4.195334 GTCATCCATGGGCCCGCT 62.195 66.667 19.37 3.52 0.00 5.52
2515 2650 2.447572 TCATCCATGGGCCCGCTA 60.448 61.111 19.37 0.00 0.00 4.26
2516 2651 2.075566 TCATCCATGGGCCCGCTAA 61.076 57.895 19.37 0.00 0.00 3.09
2517 2652 1.898574 CATCCATGGGCCCGCTAAC 60.899 63.158 19.37 0.00 0.00 2.34
2518 2653 2.382770 ATCCATGGGCCCGCTAACA 61.383 57.895 19.37 0.00 0.00 2.41
2519 2654 2.624674 ATCCATGGGCCCGCTAACAC 62.625 60.000 19.37 0.00 0.00 3.32
2520 2655 2.828549 CATGGGCCCGCTAACACC 60.829 66.667 19.37 0.00 0.00 4.16
2521 2656 3.334891 ATGGGCCCGCTAACACCA 61.335 61.111 19.37 0.00 35.39 4.17
2522 2657 3.344137 ATGGGCCCGCTAACACCAG 62.344 63.158 19.37 0.00 34.23 4.00
2530 2665 2.624169 GCTAACACCAGCGTTTCCA 58.376 52.632 0.00 0.00 0.00 3.53
2531 2666 0.517316 GCTAACACCAGCGTTTCCAG 59.483 55.000 0.00 0.00 0.00 3.86
2532 2667 0.517316 CTAACACCAGCGTTTCCAGC 59.483 55.000 0.00 0.00 0.00 4.85
2533 2668 0.887387 TAACACCAGCGTTTCCAGCC 60.887 55.000 0.00 0.00 34.64 4.85
2534 2669 3.365265 CACCAGCGTTTCCAGCCC 61.365 66.667 0.00 0.00 34.64 5.19
2535 2670 3.884774 ACCAGCGTTTCCAGCCCA 61.885 61.111 0.00 0.00 34.64 5.36
2536 2671 3.365265 CCAGCGTTTCCAGCCCAC 61.365 66.667 0.00 0.00 34.64 4.61
2537 2672 3.365265 CAGCGTTTCCAGCCCACC 61.365 66.667 0.00 0.00 34.64 4.61
2538 2673 3.884774 AGCGTTTCCAGCCCACCA 61.885 61.111 0.00 0.00 34.64 4.17
2539 2674 2.909965 GCGTTTCCAGCCCACCAA 60.910 61.111 0.00 0.00 0.00 3.67
2540 2675 3.039134 CGTTTCCAGCCCACCAAC 58.961 61.111 0.00 0.00 0.00 3.77
2541 2676 2.561037 CGTTTCCAGCCCACCAACC 61.561 63.158 0.00 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.774200 AGCTCTTGTGGCCAAATTTTAGAT 59.226 37.500 7.24 0.00 0.00 1.98
20 21 7.617041 ATCTTTTACGAATTGCTAAAGCTCT 57.383 32.000 3.26 0.00 42.66 4.09
94 96 4.642885 TGATTTTGGTTCGTCTTCCTTGTT 59.357 37.500 0.00 0.00 0.00 2.83
143 145 6.005823 ACCCTGTAAAACCCTATGTGTTTAC 58.994 40.000 0.00 0.00 34.97 2.01
152 154 5.786457 TCTATGAACACCCTGTAAAACCCTA 59.214 40.000 0.00 0.00 0.00 3.53
154 156 4.698780 GTCTATGAACACCCTGTAAAACCC 59.301 45.833 0.00 0.00 0.00 4.11
157 159 6.042781 ACAGAGTCTATGAACACCCTGTAAAA 59.957 38.462 0.43 0.00 0.00 1.52
163 165 3.100671 GGACAGAGTCTATGAACACCCT 58.899 50.000 0.43 0.00 32.47 4.34
164 166 2.832129 TGGACAGAGTCTATGAACACCC 59.168 50.000 0.43 0.00 32.47 4.61
166 168 5.140747 AGTTGGACAGAGTCTATGAACAC 57.859 43.478 0.43 0.00 32.47 3.32
171 173 7.797819 GTTTGTTAAGTTGGACAGAGTCTATG 58.202 38.462 0.00 0.00 32.47 2.23
441 443 2.372172 CAGGGTTGTTAGAGGTGGAGTT 59.628 50.000 0.00 0.00 0.00 3.01
442 444 1.978580 CAGGGTTGTTAGAGGTGGAGT 59.021 52.381 0.00 0.00 0.00 3.85
443 445 1.978580 ACAGGGTTGTTAGAGGTGGAG 59.021 52.381 0.00 0.00 32.28 3.86
444 446 2.112279 ACAGGGTTGTTAGAGGTGGA 57.888 50.000 0.00 0.00 32.28 4.02
445 447 4.041198 TCTTTACAGGGTTGTTAGAGGTGG 59.959 45.833 0.00 0.00 38.76 4.61
469 483 1.795768 ACAATGCTACACACACGGAG 58.204 50.000 0.00 0.00 0.00 4.63
554 568 6.882140 TGGTGAGTGTACTCTCAAAAGAAAAA 59.118 34.615 24.97 6.25 44.48 1.94
567 581 4.706842 AAGGTTGAATGGTGAGTGTACT 57.293 40.909 0.00 0.00 0.00 2.73
602 620 3.368739 CCATTGGAAAAGACTTGGATGGC 60.369 47.826 0.00 0.00 0.00 4.40
676 694 7.919690 TCAGTTGAATGTTAAGTTTGTCTCAG 58.080 34.615 0.00 0.00 0.00 3.35
865 926 1.212688 TCCCCCATCAAGCATGTGTAG 59.787 52.381 0.00 0.00 0.00 2.74
1099 1172 4.738998 CGGGTGGCCATGGAAGCA 62.739 66.667 18.40 0.00 0.00 3.91
1298 1374 1.006805 CATCATCGTCCTCCTCGCC 60.007 63.158 0.00 0.00 0.00 5.54
1312 1391 1.154093 GAAGTCGCCGTCGTCATCA 60.154 57.895 0.00 0.00 36.96 3.07
1315 1394 1.081641 GAAGAAGTCGCCGTCGTCA 60.082 57.895 0.33 0.00 36.96 4.35
1467 1567 0.458025 AATTTCTCGACCGAGCCGAC 60.458 55.000 14.00 0.00 41.71 4.79
1475 1575 5.032220 ACGAAACAACAAAATTTCTCGACC 58.968 37.500 0.00 0.00 33.49 4.79
1577 1694 5.422214 AGCTGTAATTTAGGCACTACAGT 57.578 39.130 9.20 0.00 42.67 3.55
1578 1695 5.874810 TCAAGCTGTAATTTAGGCACTACAG 59.125 40.000 4.15 4.15 42.67 2.74
1585 1703 5.064707 TGACGATTCAAGCTGTAATTTAGGC 59.935 40.000 0.00 0.00 0.00 3.93
1594 1712 8.816640 AAATTAAAATTGACGATTCAAGCTGT 57.183 26.923 0.00 0.00 45.07 4.40
1670 1795 3.518992 TCCTTTCCCCGTTCAATTCTT 57.481 42.857 0.00 0.00 0.00 2.52
1822 1953 6.486657 ACCACATGAGATTCTCGAAAGAAAAA 59.513 34.615 9.07 0.00 44.49 1.94
1823 1954 5.997746 ACCACATGAGATTCTCGAAAGAAAA 59.002 36.000 9.07 0.00 44.49 2.29
1824 1955 5.551233 ACCACATGAGATTCTCGAAAGAAA 58.449 37.500 9.07 0.00 44.49 2.52
1825 1956 5.152623 ACCACATGAGATTCTCGAAAGAA 57.847 39.130 9.07 0.00 45.36 2.52
1826 1957 4.808414 ACCACATGAGATTCTCGAAAGA 57.192 40.909 9.07 0.00 39.12 2.52
1827 1958 4.692625 ACAACCACATGAGATTCTCGAAAG 59.307 41.667 9.07 1.88 32.35 2.62
1886 2020 4.856801 CCTTGCCCGGATCCCGTG 62.857 72.222 0.73 0.00 46.80 4.94
1940 2074 1.025812 GTAGAGCTTCAGCCTCGCTA 58.974 55.000 0.00 0.00 43.38 4.26
2016 2151 3.426292 GCTTCAAGAGGGTAAAATCGTGC 60.426 47.826 0.00 0.00 0.00 5.34
2058 2193 1.000060 TGTCATCCTTTGCTTTGCTGC 60.000 47.619 0.00 0.00 0.00 5.25
2059 2194 3.054878 GTTGTCATCCTTTGCTTTGCTG 58.945 45.455 0.00 0.00 0.00 4.41
2060 2195 2.694628 TGTTGTCATCCTTTGCTTTGCT 59.305 40.909 0.00 0.00 0.00 3.91
2061 2196 2.796593 GTGTTGTCATCCTTTGCTTTGC 59.203 45.455 0.00 0.00 0.00 3.68
2062 2197 3.044986 CGTGTTGTCATCCTTTGCTTTG 58.955 45.455 0.00 0.00 0.00 2.77
2064 2199 1.001378 GCGTGTTGTCATCCTTTGCTT 60.001 47.619 0.00 0.00 0.00 3.91
2065 2200 0.593128 GCGTGTTGTCATCCTTTGCT 59.407 50.000 0.00 0.00 0.00 3.91
2066 2201 0.725784 CGCGTGTTGTCATCCTTTGC 60.726 55.000 0.00 0.00 0.00 3.68
2067 2202 0.110238 CCGCGTGTTGTCATCCTTTG 60.110 55.000 4.92 0.00 0.00 2.77
2068 2203 0.534203 ACCGCGTGTTGTCATCCTTT 60.534 50.000 4.92 0.00 0.00 3.11
2075 2210 1.007038 TCTACCACCGCGTGTTGTC 60.007 57.895 4.92 0.00 0.00 3.18
2076 2211 1.006571 CTCTACCACCGCGTGTTGT 60.007 57.895 4.92 7.49 0.00 3.32
2105 2240 8.572185 TCGAATCATAGTGTTCCATTTCAAAAA 58.428 29.630 0.00 0.00 0.00 1.94
2106 2241 8.105097 TCGAATCATAGTGTTCCATTTCAAAA 57.895 30.769 0.00 0.00 0.00 2.44
2107 2242 7.680442 TCGAATCATAGTGTTCCATTTCAAA 57.320 32.000 0.00 0.00 0.00 2.69
2108 2243 7.864108 ATCGAATCATAGTGTTCCATTTCAA 57.136 32.000 0.00 0.00 0.00 2.69
2109 2244 7.984617 TGTATCGAATCATAGTGTTCCATTTCA 59.015 33.333 0.00 0.00 0.00 2.69
2110 2245 8.365399 TGTATCGAATCATAGTGTTCCATTTC 57.635 34.615 0.00 0.00 0.00 2.17
2111 2246 8.908786 ATGTATCGAATCATAGTGTTCCATTT 57.091 30.769 0.00 0.00 0.00 2.32
2112 2247 8.908786 AATGTATCGAATCATAGTGTTCCATT 57.091 30.769 6.21 0.00 0.00 3.16
2113 2248 9.996554 TTAATGTATCGAATCATAGTGTTCCAT 57.003 29.630 6.21 0.00 0.00 3.41
2114 2249 9.256477 GTTAATGTATCGAATCATAGTGTTCCA 57.744 33.333 6.21 0.00 0.00 3.53
2115 2250 8.709646 GGTTAATGTATCGAATCATAGTGTTCC 58.290 37.037 6.21 2.24 0.00 3.62
2116 2251 9.256477 TGGTTAATGTATCGAATCATAGTGTTC 57.744 33.333 6.21 0.00 0.00 3.18
2117 2252 9.261180 CTGGTTAATGTATCGAATCATAGTGTT 57.739 33.333 6.21 0.00 0.00 3.32
2118 2253 7.872993 CCTGGTTAATGTATCGAATCATAGTGT 59.127 37.037 6.21 0.00 0.00 3.55
2119 2254 7.872993 ACCTGGTTAATGTATCGAATCATAGTG 59.127 37.037 0.00 0.00 0.00 2.74
2120 2255 7.963532 ACCTGGTTAATGTATCGAATCATAGT 58.036 34.615 0.00 0.00 0.00 2.12
2121 2256 7.545965 GGACCTGGTTAATGTATCGAATCATAG 59.454 40.741 0.00 1.36 0.00 2.23
2122 2257 7.015779 TGGACCTGGTTAATGTATCGAATCATA 59.984 37.037 0.00 0.00 0.00 2.15
2123 2258 6.183361 TGGACCTGGTTAATGTATCGAATCAT 60.183 38.462 0.00 0.00 0.00 2.45
2124 2259 5.129650 TGGACCTGGTTAATGTATCGAATCA 59.870 40.000 0.00 0.00 0.00 2.57
2125 2260 5.607477 TGGACCTGGTTAATGTATCGAATC 58.393 41.667 0.00 0.00 0.00 2.52
2126 2261 5.611374 CTGGACCTGGTTAATGTATCGAAT 58.389 41.667 0.00 0.00 0.00 3.34
2127 2262 4.682320 GCTGGACCTGGTTAATGTATCGAA 60.682 45.833 0.00 0.00 0.00 3.71
2128 2263 3.181469 GCTGGACCTGGTTAATGTATCGA 60.181 47.826 0.00 0.00 0.00 3.59
2129 2264 3.131396 GCTGGACCTGGTTAATGTATCG 58.869 50.000 0.00 0.00 0.00 2.92
2130 2265 3.118038 TGGCTGGACCTGGTTAATGTATC 60.118 47.826 0.00 0.00 40.22 2.24
2131 2266 2.849943 TGGCTGGACCTGGTTAATGTAT 59.150 45.455 0.00 0.00 40.22 2.29
2132 2267 2.238646 CTGGCTGGACCTGGTTAATGTA 59.761 50.000 0.00 0.00 40.22 2.29
2133 2268 1.004745 CTGGCTGGACCTGGTTAATGT 59.995 52.381 0.00 0.00 40.22 2.71
2134 2269 1.755179 CTGGCTGGACCTGGTTAATG 58.245 55.000 0.00 0.00 40.22 1.90
2160 2295 0.734942 ATGTAAGTGTTCGACGGGCG 60.735 55.000 0.00 0.00 42.69 6.13
2161 2296 0.997196 GATGTAAGTGTTCGACGGGC 59.003 55.000 0.00 0.00 0.00 6.13
2162 2297 2.357327 TGATGTAAGTGTTCGACGGG 57.643 50.000 0.00 0.00 0.00 5.28
2163 2298 4.444388 CCATATGATGTAAGTGTTCGACGG 59.556 45.833 3.65 0.00 0.00 4.79
2164 2299 4.444388 CCCATATGATGTAAGTGTTCGACG 59.556 45.833 3.65 0.00 0.00 5.12
2165 2300 5.597806 TCCCATATGATGTAAGTGTTCGAC 58.402 41.667 3.65 0.00 0.00 4.20
2166 2301 5.221441 CCTCCCATATGATGTAAGTGTTCGA 60.221 44.000 3.65 0.00 0.00 3.71
2167 2302 4.991056 CCTCCCATATGATGTAAGTGTTCG 59.009 45.833 3.65 0.00 0.00 3.95
2168 2303 5.308825 CCCTCCCATATGATGTAAGTGTTC 58.691 45.833 3.65 0.00 0.00 3.18
2169 2304 4.446311 GCCCTCCCATATGATGTAAGTGTT 60.446 45.833 3.65 0.00 0.00 3.32
2170 2305 3.073062 GCCCTCCCATATGATGTAAGTGT 59.927 47.826 3.65 0.00 0.00 3.55
2171 2306 3.328931 AGCCCTCCCATATGATGTAAGTG 59.671 47.826 3.65 0.00 0.00 3.16
2172 2307 3.602608 AGCCCTCCCATATGATGTAAGT 58.397 45.455 3.65 0.00 0.00 2.24
2173 2308 4.042062 TGAAGCCCTCCCATATGATGTAAG 59.958 45.833 3.65 0.00 0.00 2.34
2174 2309 3.980022 TGAAGCCCTCCCATATGATGTAA 59.020 43.478 3.65 0.00 0.00 2.41
2175 2310 3.597182 TGAAGCCCTCCCATATGATGTA 58.403 45.455 3.65 0.00 0.00 2.29
2176 2311 2.421725 TGAAGCCCTCCCATATGATGT 58.578 47.619 3.65 0.00 0.00 3.06
2177 2312 3.181436 ACTTGAAGCCCTCCCATATGATG 60.181 47.826 3.65 0.00 0.00 3.07
2178 2313 3.059097 ACTTGAAGCCCTCCCATATGAT 58.941 45.455 3.65 0.00 0.00 2.45
2179 2314 2.439507 GACTTGAAGCCCTCCCATATGA 59.560 50.000 3.65 0.00 0.00 2.15
2180 2315 2.173356 TGACTTGAAGCCCTCCCATATG 59.827 50.000 0.00 0.00 0.00 1.78
2181 2316 2.492025 TGACTTGAAGCCCTCCCATAT 58.508 47.619 0.00 0.00 0.00 1.78
2182 2317 1.965414 TGACTTGAAGCCCTCCCATA 58.035 50.000 0.00 0.00 0.00 2.74
2183 2318 1.302907 ATGACTTGAAGCCCTCCCAT 58.697 50.000 0.00 0.00 0.00 4.00
2184 2319 1.965414 TATGACTTGAAGCCCTCCCA 58.035 50.000 0.00 0.00 0.00 4.37
2185 2320 2.708325 AGATATGACTTGAAGCCCTCCC 59.292 50.000 0.00 0.00 0.00 4.30
2186 2321 3.244387 GGAGATATGACTTGAAGCCCTCC 60.244 52.174 0.00 0.00 0.00 4.30
2187 2322 3.244387 GGGAGATATGACTTGAAGCCCTC 60.244 52.174 0.00 0.00 0.00 4.30
2188 2323 2.708325 GGGAGATATGACTTGAAGCCCT 59.292 50.000 0.00 0.00 0.00 5.19
2189 2324 2.548920 CGGGAGATATGACTTGAAGCCC 60.549 54.545 0.00 0.00 0.00 5.19
2190 2325 2.365617 TCGGGAGATATGACTTGAAGCC 59.634 50.000 0.00 0.00 0.00 4.35
2191 2326 3.735237 TCGGGAGATATGACTTGAAGC 57.265 47.619 0.00 0.00 0.00 3.86
2192 2327 5.011090 TGTTCGGGAGATATGACTTGAAG 57.989 43.478 0.00 0.00 39.57 3.02
2193 2328 5.175859 GTTGTTCGGGAGATATGACTTGAA 58.824 41.667 0.00 0.00 39.57 2.69
2194 2329 4.676986 CGTTGTTCGGGAGATATGACTTGA 60.677 45.833 0.00 0.00 39.57 3.02
2195 2330 3.551890 CGTTGTTCGGGAGATATGACTTG 59.448 47.826 0.00 0.00 39.57 3.16
2196 2331 3.446161 TCGTTGTTCGGGAGATATGACTT 59.554 43.478 0.00 0.00 39.57 3.01
2197 2332 3.021695 TCGTTGTTCGGGAGATATGACT 58.978 45.455 0.00 0.00 39.57 3.41
2198 2333 3.372954 CTCGTTGTTCGGGAGATATGAC 58.627 50.000 0.00 0.00 43.64 3.06
2199 2334 2.361119 CCTCGTTGTTCGGGAGATATGA 59.639 50.000 0.00 0.00 43.64 2.15
2200 2335 2.743938 CCTCGTTGTTCGGGAGATATG 58.256 52.381 0.00 0.00 43.64 1.78
2201 2336 1.068741 GCCTCGTTGTTCGGGAGATAT 59.931 52.381 0.00 0.00 43.64 1.63
2202 2337 0.458669 GCCTCGTTGTTCGGGAGATA 59.541 55.000 0.00 0.00 43.64 1.98
2203 2338 1.218316 GCCTCGTTGTTCGGGAGAT 59.782 57.895 0.00 0.00 43.64 2.75
2204 2339 2.654877 GCCTCGTTGTTCGGGAGA 59.345 61.111 0.00 0.00 43.64 3.71
2205 2340 2.809601 CGCCTCGTTGTTCGGGAG 60.810 66.667 0.00 0.00 43.64 4.30
2208 2343 2.604174 AAAGCGCCTCGTTGTTCGG 61.604 57.895 2.29 0.00 40.32 4.30
2209 2344 1.438710 CAAAGCGCCTCGTTGTTCG 60.439 57.895 2.29 0.00 41.41 3.95
2210 2345 1.725973 GCAAAGCGCCTCGTTGTTC 60.726 57.895 2.29 0.00 36.68 3.18
2211 2346 2.117941 GAGCAAAGCGCCTCGTTGTT 62.118 55.000 2.29 1.36 44.04 2.83
2212 2347 2.591715 AGCAAAGCGCCTCGTTGT 60.592 55.556 2.29 0.00 44.04 3.32
2213 2348 2.174349 GAGCAAAGCGCCTCGTTG 59.826 61.111 2.29 4.99 44.04 4.10
2214 2349 3.050275 GGAGCAAAGCGCCTCGTT 61.050 61.111 2.29 0.00 44.91 3.85
2228 2363 1.208614 GCTGTCGCTGCTTTTGGAG 59.791 57.895 0.00 0.00 41.13 3.86
2229 2364 0.890542 ATGCTGTCGCTGCTTTTGGA 60.891 50.000 0.00 0.00 36.97 3.53
2230 2365 0.731514 CATGCTGTCGCTGCTTTTGG 60.732 55.000 0.00 0.00 36.97 3.28
2231 2366 0.239082 TCATGCTGTCGCTGCTTTTG 59.761 50.000 0.00 5.82 36.97 2.44
2232 2367 0.953727 TTCATGCTGTCGCTGCTTTT 59.046 45.000 0.00 0.00 36.97 2.27
2233 2368 0.239347 GTTCATGCTGTCGCTGCTTT 59.761 50.000 0.00 0.00 36.97 3.51
2234 2369 0.604780 AGTTCATGCTGTCGCTGCTT 60.605 50.000 0.00 2.16 36.97 3.91
2235 2370 0.247460 TAGTTCATGCTGTCGCTGCT 59.753 50.000 0.00 0.00 36.97 4.24
2236 2371 1.078709 TTAGTTCATGCTGTCGCTGC 58.921 50.000 0.00 0.00 36.97 5.25
2237 2372 3.371898 TGATTTAGTTCATGCTGTCGCTG 59.628 43.478 0.00 0.00 36.97 5.18
2238 2373 3.599343 TGATTTAGTTCATGCTGTCGCT 58.401 40.909 0.00 0.00 36.97 4.93
2239 2374 4.542662 ATGATTTAGTTCATGCTGTCGC 57.457 40.909 0.00 0.00 35.05 5.19
2240 2375 7.003939 TGTAATGATTTAGTTCATGCTGTCG 57.996 36.000 0.00 0.00 36.48 4.35
2241 2376 7.698130 GGTTGTAATGATTTAGTTCATGCTGTC 59.302 37.037 0.00 0.00 36.48 3.51
2242 2377 7.362920 GGGTTGTAATGATTTAGTTCATGCTGT 60.363 37.037 0.00 0.00 36.48 4.40
2243 2378 6.974622 GGGTTGTAATGATTTAGTTCATGCTG 59.025 38.462 0.00 0.00 36.48 4.41
2244 2379 6.096846 GGGGTTGTAATGATTTAGTTCATGCT 59.903 38.462 0.00 0.00 36.48 3.79
2245 2380 6.096846 AGGGGTTGTAATGATTTAGTTCATGC 59.903 38.462 0.00 0.00 36.48 4.06
2246 2381 7.645058 AGGGGTTGTAATGATTTAGTTCATG 57.355 36.000 0.00 0.00 36.48 3.07
2247 2382 7.124147 CCAAGGGGTTGTAATGATTTAGTTCAT 59.876 37.037 0.00 0.00 37.96 2.57
2248 2383 6.435904 CCAAGGGGTTGTAATGATTTAGTTCA 59.564 38.462 0.00 0.00 0.00 3.18
2249 2384 6.127451 CCCAAGGGGTTGTAATGATTTAGTTC 60.127 42.308 0.00 0.00 38.25 3.01
2250 2385 5.719563 CCCAAGGGGTTGTAATGATTTAGTT 59.280 40.000 0.00 0.00 38.25 2.24
2251 2386 5.269189 CCCAAGGGGTTGTAATGATTTAGT 58.731 41.667 0.00 0.00 38.25 2.24
2252 2387 5.852282 CCCAAGGGGTTGTAATGATTTAG 57.148 43.478 0.00 0.00 38.25 1.85
2268 2403 1.686355 TTGCGTAATATGCCCCAAGG 58.314 50.000 1.60 0.00 0.00 3.61
2269 2404 2.228822 GGATTGCGTAATATGCCCCAAG 59.771 50.000 0.00 0.00 0.00 3.61
2270 2405 2.235016 GGATTGCGTAATATGCCCCAA 58.765 47.619 0.00 0.00 0.00 4.12
2271 2406 1.546773 GGGATTGCGTAATATGCCCCA 60.547 52.381 13.64 0.00 30.57 4.96
2272 2407 1.173913 GGGATTGCGTAATATGCCCC 58.826 55.000 9.53 7.43 0.00 5.80
2273 2408 0.802494 CGGGATTGCGTAATATGCCC 59.198 55.000 10.38 10.38 0.00 5.36
2274 2409 0.802494 CCGGGATTGCGTAATATGCC 59.198 55.000 0.00 0.00 0.00 4.40
2275 2410 0.802494 CCCGGGATTGCGTAATATGC 59.198 55.000 18.48 0.00 0.00 3.14
2276 2411 2.073816 GTCCCGGGATTGCGTAATATG 58.926 52.381 29.73 0.00 0.00 1.78
2277 2412 1.002773 GGTCCCGGGATTGCGTAATAT 59.997 52.381 29.73 0.00 0.00 1.28
2278 2413 0.393820 GGTCCCGGGATTGCGTAATA 59.606 55.000 29.73 0.00 0.00 0.98
2279 2414 1.147600 GGTCCCGGGATTGCGTAAT 59.852 57.895 29.73 0.00 0.00 1.89
2280 2415 2.585698 GGTCCCGGGATTGCGTAA 59.414 61.111 29.73 0.00 0.00 3.18
2281 2416 3.840594 CGGTCCCGGGATTGCGTA 61.841 66.667 29.73 0.00 35.56 4.42
2284 2419 3.178540 ATAGCGGTCCCGGGATTGC 62.179 63.158 31.85 31.85 40.19 3.56
2285 2420 1.004918 GATAGCGGTCCCGGGATTG 60.005 63.158 29.73 22.90 40.19 2.67
2286 2421 1.458777 TGATAGCGGTCCCGGGATT 60.459 57.895 29.73 15.30 40.19 3.01
2287 2422 2.200370 TGATAGCGGTCCCGGGAT 59.800 61.111 29.73 13.79 40.19 3.85
2288 2423 2.836360 GTGATAGCGGTCCCGGGA 60.836 66.667 22.63 22.63 40.19 5.14
2289 2424 3.925090 GGTGATAGCGGTCCCGGG 61.925 72.222 16.85 16.85 40.19 5.73
2290 2425 3.151710 TGGTGATAGCGGTCCCGG 61.152 66.667 7.97 0.00 40.19 5.73
2291 2426 2.417516 CTGGTGATAGCGGTCCCG 59.582 66.667 0.24 0.24 43.09 5.14
2292 2427 2.109181 GCTGGTGATAGCGGTCCC 59.891 66.667 0.00 0.00 33.46 4.46
2298 2433 1.060698 GTCGAAAACGCTGGTGATAGC 59.939 52.381 0.00 0.00 40.29 2.97
2299 2434 1.659098 GGTCGAAAACGCTGGTGATAG 59.341 52.381 0.00 0.00 0.00 2.08
2300 2435 1.673626 GGGTCGAAAACGCTGGTGATA 60.674 52.381 0.00 0.00 37.81 2.15
2301 2436 0.953960 GGGTCGAAAACGCTGGTGAT 60.954 55.000 0.00 0.00 37.81 3.06
2302 2437 1.595929 GGGTCGAAAACGCTGGTGA 60.596 57.895 0.00 0.00 37.81 4.02
2303 2438 1.890041 TGGGTCGAAAACGCTGGTG 60.890 57.895 0.00 0.00 41.27 4.17
2304 2439 1.890510 GTGGGTCGAAAACGCTGGT 60.891 57.895 0.00 0.00 41.27 4.00
2305 2440 1.234615 ATGTGGGTCGAAAACGCTGG 61.235 55.000 0.00 0.00 41.27 4.85
2306 2441 0.110238 CATGTGGGTCGAAAACGCTG 60.110 55.000 0.00 0.00 41.27 5.18
2307 2442 1.852067 GCATGTGGGTCGAAAACGCT 61.852 55.000 0.00 0.00 41.27 5.07
2308 2443 1.442017 GCATGTGGGTCGAAAACGC 60.442 57.895 0.00 0.00 41.08 4.84
2309 2444 1.154488 CGCATGTGGGTCGAAAACG 60.154 57.895 0.00 0.00 0.00 3.60
2310 2445 0.110373 GACGCATGTGGGTCGAAAAC 60.110 55.000 11.65 0.00 45.66 2.43
2311 2446 2.240230 GACGCATGTGGGTCGAAAA 58.760 52.632 11.65 0.00 45.66 2.29
2312 2447 3.960237 GACGCATGTGGGTCGAAA 58.040 55.556 11.65 0.00 45.66 3.46
2317 2452 0.324614 TCTGATTGACGCATGTGGGT 59.675 50.000 11.65 2.09 44.25 4.51
2318 2453 0.729116 GTCTGATTGACGCATGTGGG 59.271 55.000 11.65 0.00 35.81 4.61
2319 2454 0.729116 GGTCTGATTGACGCATGTGG 59.271 55.000 11.65 0.00 46.24 4.17
2326 2461 1.019278 CCGGTTGGGTCTGATTGACG 61.019 60.000 0.00 0.00 46.24 4.35
2327 2462 0.323629 TCCGGTTGGGTCTGATTGAC 59.676 55.000 0.00 0.00 44.63 3.18
2328 2463 0.613260 CTCCGGTTGGGTCTGATTGA 59.387 55.000 0.00 0.00 37.00 2.57
2329 2464 0.613260 TCTCCGGTTGGGTCTGATTG 59.387 55.000 0.00 0.00 37.00 2.67
2330 2465 0.905357 CTCTCCGGTTGGGTCTGATT 59.095 55.000 0.00 0.00 37.00 2.57
2331 2466 1.617947 GCTCTCCGGTTGGGTCTGAT 61.618 60.000 0.00 0.00 37.00 2.90
2332 2467 2.283529 GCTCTCCGGTTGGGTCTGA 61.284 63.158 0.00 0.00 37.00 3.27
2333 2468 2.111999 TTGCTCTCCGGTTGGGTCTG 62.112 60.000 0.00 0.00 37.00 3.51
2334 2469 1.841556 TTGCTCTCCGGTTGGGTCT 60.842 57.895 0.00 0.00 37.00 3.85
2335 2470 1.671379 GTTGCTCTCCGGTTGGGTC 60.671 63.158 0.00 0.00 37.00 4.46
2336 2471 2.430367 GTTGCTCTCCGGTTGGGT 59.570 61.111 0.00 0.00 37.00 4.51
2337 2472 1.966451 GTGTTGCTCTCCGGTTGGG 60.966 63.158 0.00 0.00 35.24 4.12
2338 2473 1.966451 GGTGTTGCTCTCCGGTTGG 60.966 63.158 0.00 0.00 0.00 3.77
2339 2474 2.317609 CGGTGTTGCTCTCCGGTTG 61.318 63.158 0.00 0.00 45.75 3.77
2340 2475 2.030562 CGGTGTTGCTCTCCGGTT 59.969 61.111 0.00 0.00 45.75 4.44
2344 2479 2.094182 TCATAAGTCGGTGTTGCTCTCC 60.094 50.000 0.00 0.00 0.00 3.71
2345 2480 2.924290 GTCATAAGTCGGTGTTGCTCTC 59.076 50.000 0.00 0.00 0.00 3.20
2346 2481 2.299013 TGTCATAAGTCGGTGTTGCTCT 59.701 45.455 0.00 0.00 0.00 4.09
2347 2482 2.668457 CTGTCATAAGTCGGTGTTGCTC 59.332 50.000 0.00 0.00 0.00 4.26
2348 2483 2.612972 CCTGTCATAAGTCGGTGTTGCT 60.613 50.000 0.00 0.00 0.00 3.91
2349 2484 1.732259 CCTGTCATAAGTCGGTGTTGC 59.268 52.381 0.00 0.00 0.00 4.17
2350 2485 1.732259 GCCTGTCATAAGTCGGTGTTG 59.268 52.381 0.00 0.00 0.00 3.33
2351 2486 1.338769 GGCCTGTCATAAGTCGGTGTT 60.339 52.381 0.00 0.00 0.00 3.32
2352 2487 0.249398 GGCCTGTCATAAGTCGGTGT 59.751 55.000 0.00 0.00 0.00 4.16
2353 2488 0.537188 AGGCCTGTCATAAGTCGGTG 59.463 55.000 3.11 0.00 0.00 4.94
2354 2489 1.066143 CAAGGCCTGTCATAAGTCGGT 60.066 52.381 5.69 0.00 0.00 4.69
2355 2490 1.656652 CAAGGCCTGTCATAAGTCGG 58.343 55.000 5.69 0.00 0.00 4.79
2356 2491 1.656652 CCAAGGCCTGTCATAAGTCG 58.343 55.000 5.69 0.00 0.00 4.18
2357 2492 2.019156 GCCCAAGGCCTGTCATAAGTC 61.019 57.143 5.69 0.00 44.06 3.01
2358 2493 0.034089 GCCCAAGGCCTGTCATAAGT 60.034 55.000 5.69 0.00 44.06 2.24
2359 2494 2.799176 GCCCAAGGCCTGTCATAAG 58.201 57.895 5.69 0.00 44.06 1.73
2384 2519 0.698818 ACAGGCTAGTCTTTTGGGGG 59.301 55.000 0.00 0.00 0.00 5.40
2385 2520 2.586648 AACAGGCTAGTCTTTTGGGG 57.413 50.000 0.00 0.00 0.00 4.96
2386 2521 3.263425 TCCTAACAGGCTAGTCTTTTGGG 59.737 47.826 17.14 17.14 34.61 4.12
2387 2522 4.508662 CTCCTAACAGGCTAGTCTTTTGG 58.491 47.826 6.00 2.88 34.61 3.28
2388 2523 4.508662 CCTCCTAACAGGCTAGTCTTTTG 58.491 47.826 6.00 0.00 34.61 2.44
2389 2524 3.519913 CCCTCCTAACAGGCTAGTCTTTT 59.480 47.826 0.00 0.00 34.61 2.27
2390 2525 3.108376 CCCTCCTAACAGGCTAGTCTTT 58.892 50.000 0.00 0.00 34.61 2.52
2391 2526 2.627217 CCCCTCCTAACAGGCTAGTCTT 60.627 54.545 0.00 0.00 34.61 3.01
2392 2527 1.062810 CCCCTCCTAACAGGCTAGTCT 60.063 57.143 0.00 0.00 34.61 3.24
2393 2528 1.063114 TCCCCTCCTAACAGGCTAGTC 60.063 57.143 0.00 0.00 34.61 2.59
2394 2529 1.016415 TCCCCTCCTAACAGGCTAGT 58.984 55.000 0.00 0.00 34.61 2.57
2395 2530 1.343075 TGTCCCCTCCTAACAGGCTAG 60.343 57.143 0.00 0.00 34.61 3.42
2396 2531 0.714180 TGTCCCCTCCTAACAGGCTA 59.286 55.000 0.00 0.00 34.61 3.93
2397 2532 0.910088 GTGTCCCCTCCTAACAGGCT 60.910 60.000 0.00 0.00 34.61 4.58
2398 2533 1.602771 GTGTCCCCTCCTAACAGGC 59.397 63.158 0.00 0.00 34.61 4.85
2399 2534 2.297937 GGTGTCCCCTCCTAACAGG 58.702 63.158 0.00 0.00 36.46 4.00
2411 2546 1.347243 TTATAAGGGCGGGGGTGTCC 61.347 60.000 0.00 0.00 0.00 4.02
2412 2547 0.108019 CTTATAAGGGCGGGGGTGTC 59.892 60.000 4.42 0.00 0.00 3.67
2413 2548 0.622446 ACTTATAAGGGCGGGGGTGT 60.622 55.000 16.73 0.00 0.00 4.16
2414 2549 0.108019 GACTTATAAGGGCGGGGGTG 59.892 60.000 16.73 0.00 0.00 4.61
2415 2550 1.405272 CGACTTATAAGGGCGGGGGT 61.405 60.000 16.73 0.00 0.00 4.95
2416 2551 1.370064 CGACTTATAAGGGCGGGGG 59.630 63.158 16.73 0.00 0.00 5.40
2417 2552 0.249741 CACGACTTATAAGGGCGGGG 60.250 60.000 24.35 16.28 33.96 5.73
2418 2553 0.462789 ACACGACTTATAAGGGCGGG 59.537 55.000 22.67 22.67 37.36 6.13
2419 2554 2.304751 AACACGACTTATAAGGGCGG 57.695 50.000 24.35 18.04 33.96 6.13
2420 2555 5.751990 AGAAATAACACGACTTATAAGGGCG 59.248 40.000 21.15 21.15 35.18 6.13
2421 2556 6.202379 GGAGAAATAACACGACTTATAAGGGC 59.798 42.308 16.73 7.37 0.00 5.19
2422 2557 6.704937 GGGAGAAATAACACGACTTATAAGGG 59.295 42.308 16.73 10.26 0.00 3.95
2423 2558 6.704937 GGGGAGAAATAACACGACTTATAAGG 59.295 42.308 16.73 2.57 0.00 2.69
2424 2559 6.704937 GGGGGAGAAATAACACGACTTATAAG 59.295 42.308 11.05 11.05 0.00 1.73
2425 2560 6.585416 GGGGGAGAAATAACACGACTTATAA 58.415 40.000 0.00 0.00 0.00 0.98
2426 2561 6.165700 GGGGGAGAAATAACACGACTTATA 57.834 41.667 0.00 0.00 0.00 0.98
2427 2562 5.032327 GGGGGAGAAATAACACGACTTAT 57.968 43.478 0.00 0.00 0.00 1.73
2428 2563 4.476628 GGGGGAGAAATAACACGACTTA 57.523 45.455 0.00 0.00 0.00 2.24
2429 2564 3.345508 GGGGGAGAAATAACACGACTT 57.654 47.619 0.00 0.00 0.00 3.01
2451 2586 3.497942 GGGTTTAGTCCCACATCAGTTGT 60.498 47.826 0.00 0.00 46.30 3.32
2452 2587 3.081804 GGGTTTAGTCCCACATCAGTTG 58.918 50.000 0.00 0.00 46.30 3.16
2453 2588 3.434940 GGGTTTAGTCCCACATCAGTT 57.565 47.619 0.00 0.00 46.30 3.16
2463 2598 3.353557 GGGAGATTGTTGGGTTTAGTCC 58.646 50.000 0.00 0.00 0.00 3.85
2464 2599 3.353557 GGGGAGATTGTTGGGTTTAGTC 58.646 50.000 0.00 0.00 0.00 2.59
2465 2600 2.042569 GGGGGAGATTGTTGGGTTTAGT 59.957 50.000 0.00 0.00 0.00 2.24
2466 2601 2.311841 AGGGGGAGATTGTTGGGTTTAG 59.688 50.000 0.00 0.00 0.00 1.85
2467 2602 2.310647 GAGGGGGAGATTGTTGGGTTTA 59.689 50.000 0.00 0.00 0.00 2.01
2468 2603 1.077169 GAGGGGGAGATTGTTGGGTTT 59.923 52.381 0.00 0.00 0.00 3.27
2469 2604 0.704664 GAGGGGGAGATTGTTGGGTT 59.295 55.000 0.00 0.00 0.00 4.11
2470 2605 0.477597 TGAGGGGGAGATTGTTGGGT 60.478 55.000 0.00 0.00 0.00 4.51
2471 2606 0.034089 GTGAGGGGGAGATTGTTGGG 60.034 60.000 0.00 0.00 0.00 4.12
2472 2607 0.698238 TGTGAGGGGGAGATTGTTGG 59.302 55.000 0.00 0.00 0.00 3.77
2473 2608 1.073763 TGTGTGAGGGGGAGATTGTTG 59.926 52.381 0.00 0.00 0.00 3.33
2474 2609 1.444933 TGTGTGAGGGGGAGATTGTT 58.555 50.000 0.00 0.00 0.00 2.83
2475 2610 1.561542 GATGTGTGAGGGGGAGATTGT 59.438 52.381 0.00 0.00 0.00 2.71
2476 2611 1.473965 CGATGTGTGAGGGGGAGATTG 60.474 57.143 0.00 0.00 0.00 2.67
2477 2612 0.833287 CGATGTGTGAGGGGGAGATT 59.167 55.000 0.00 0.00 0.00 2.40
2478 2613 1.050988 CCGATGTGTGAGGGGGAGAT 61.051 60.000 0.00 0.00 0.00 2.75
2479 2614 1.685765 CCGATGTGTGAGGGGGAGA 60.686 63.158 0.00 0.00 0.00 3.71
2480 2615 1.961180 GACCGATGTGTGAGGGGGAG 61.961 65.000 0.00 0.00 0.00 4.30
2481 2616 1.987855 GACCGATGTGTGAGGGGGA 60.988 63.158 0.00 0.00 0.00 4.81
2482 2617 1.626356 ATGACCGATGTGTGAGGGGG 61.626 60.000 0.00 0.00 0.00 5.40
2483 2618 0.179073 GATGACCGATGTGTGAGGGG 60.179 60.000 0.00 0.00 0.00 4.79
2484 2619 0.179073 GGATGACCGATGTGTGAGGG 60.179 60.000 0.00 0.00 0.00 4.30
2485 2620 0.536724 TGGATGACCGATGTGTGAGG 59.463 55.000 0.00 0.00 39.42 3.86
2486 2621 2.207590 CATGGATGACCGATGTGTGAG 58.792 52.381 0.00 0.00 39.42 3.51
2487 2622 1.134431 CCATGGATGACCGATGTGTGA 60.134 52.381 5.56 0.00 39.42 3.58
2488 2623 1.302366 CCATGGATGACCGATGTGTG 58.698 55.000 5.56 0.00 39.42 3.82
2489 2624 0.181114 CCCATGGATGACCGATGTGT 59.819 55.000 15.22 0.00 39.42 3.72
2490 2625 1.168407 GCCCATGGATGACCGATGTG 61.168 60.000 15.22 0.00 39.42 3.21
2491 2626 1.149174 GCCCATGGATGACCGATGT 59.851 57.895 15.22 0.00 39.42 3.06
2492 2627 1.601759 GGCCCATGGATGACCGATG 60.602 63.158 15.22 0.00 39.42 3.84
2493 2628 2.833913 GGGCCCATGGATGACCGAT 61.834 63.158 19.95 0.00 39.42 4.18
2494 2629 3.488569 GGGCCCATGGATGACCGA 61.489 66.667 19.95 0.00 39.42 4.69
2495 2630 4.935495 CGGGCCCATGGATGACCG 62.935 72.222 24.92 19.35 39.42 4.79
2497 2632 2.337879 TTAGCGGGCCCATGGATGAC 62.338 60.000 24.92 0.00 0.00 3.06
2498 2633 2.075566 TTAGCGGGCCCATGGATGA 61.076 57.895 24.92 0.00 0.00 2.92
2499 2634 1.898574 GTTAGCGGGCCCATGGATG 60.899 63.158 24.92 4.93 0.00 3.51
2500 2635 2.382770 TGTTAGCGGGCCCATGGAT 61.383 57.895 24.92 6.91 0.00 3.41
2501 2636 3.012119 TGTTAGCGGGCCCATGGA 61.012 61.111 24.92 0.89 0.00 3.41
2502 2637 2.828549 GTGTTAGCGGGCCCATGG 60.829 66.667 24.92 4.14 0.00 3.66
2503 2638 2.828549 GGTGTTAGCGGGCCCATG 60.829 66.667 24.92 7.60 0.00 3.66
2504 2639 3.334891 TGGTGTTAGCGGGCCCAT 61.335 61.111 24.92 12.72 0.00 4.00
2505 2640 4.028490 CTGGTGTTAGCGGGCCCA 62.028 66.667 24.92 0.00 0.00 5.36
2512 2647 0.517316 CTGGAAACGCTGGTGTTAGC 59.483 55.000 0.00 0.00 40.29 3.09
2513 2648 0.517316 GCTGGAAACGCTGGTGTTAG 59.483 55.000 0.00 0.00 0.00 2.34
2514 2649 0.887387 GGCTGGAAACGCTGGTGTTA 60.887 55.000 0.00 0.00 0.00 2.41
2515 2650 2.193536 GGCTGGAAACGCTGGTGTT 61.194 57.895 0.00 0.00 0.00 3.32
2516 2651 2.594592 GGCTGGAAACGCTGGTGT 60.595 61.111 0.00 0.00 0.00 4.16
2517 2652 3.365265 GGGCTGGAAACGCTGGTG 61.365 66.667 0.00 0.00 0.00 4.17
2518 2653 3.884774 TGGGCTGGAAACGCTGGT 61.885 61.111 0.00 0.00 0.00 4.00
2519 2654 3.365265 GTGGGCTGGAAACGCTGG 61.365 66.667 0.00 0.00 0.00 4.85
2520 2655 3.365265 GGTGGGCTGGAAACGCTG 61.365 66.667 0.00 0.00 0.00 5.18
2521 2656 3.429372 TTGGTGGGCTGGAAACGCT 62.429 57.895 0.00 0.00 0.00 5.07
2522 2657 2.909965 TTGGTGGGCTGGAAACGC 60.910 61.111 0.00 0.00 0.00 4.84
2523 2658 2.561037 GGTTGGTGGGCTGGAAACG 61.561 63.158 0.00 0.00 0.00 3.60
2524 2659 3.455152 GGTTGGTGGGCTGGAAAC 58.545 61.111 0.00 0.00 0.00 2.78



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.