Multiple sequence alignment - TraesCS2B01G419200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G419200 chr2B 100.000 7661 0 0 1 7661 600739018 600746678 0.000000e+00 14148.0
1 TraesCS2B01G419200 chr2B 86.316 95 10 3 5417 5508 600744142 600744236 4.890000e-17 100.0
2 TraesCS2B01G419200 chr2B 86.316 95 10 3 5125 5219 600744434 600744525 4.890000e-17 100.0
3 TraesCS2B01G419200 chr2B 85.057 87 11 2 6675 6759 5060779 5060693 3.810000e-13 87.9
4 TraesCS2B01G419200 chr2A 88.770 2894 167 58 266 3039 654906483 654909338 0.000000e+00 3398.0
5 TraesCS2B01G419200 chr2A 92.535 1795 84 21 3802 5568 654910321 654912093 0.000000e+00 2527.0
6 TraesCS2B01G419200 chr2A 87.249 1294 58 42 5571 6837 654912152 654913365 0.000000e+00 1376.0
7 TraesCS2B01G419200 chr2A 88.903 775 61 16 6899 7661 654913361 654914122 0.000000e+00 931.0
8 TraesCS2B01G419200 chr2A 84.802 658 53 12 3194 3804 654909585 654910242 1.090000e-172 617.0
9 TraesCS2B01G419200 chr2A 92.386 197 8 2 1 190 654906259 654906455 2.720000e-69 274.0
10 TraesCS2B01G419200 chr2A 90.909 99 7 2 5125 5223 654911940 654912036 1.730000e-26 132.0
11 TraesCS2B01G419200 chr2A 89.320 103 7 3 5417 5515 654911637 654911739 8.070000e-25 126.0
12 TraesCS2B01G419200 chr2A 85.870 92 8 1 6113 6199 778801318 778801409 8.190000e-15 93.5
13 TraesCS2B01G419200 chr2D 90.340 2443 134 32 3933 6316 511691027 511693426 0.000000e+00 3110.0
14 TraesCS2B01G419200 chr2D 92.218 2223 109 14 908 3109 511687899 511690078 0.000000e+00 3088.0
15 TraesCS2B01G419200 chr2D 85.693 1342 100 25 6344 7661 511693426 511694699 0.000000e+00 1330.0
16 TraesCS2B01G419200 chr2D 87.065 804 55 16 3194 3954 511690216 511691013 0.000000e+00 863.0
17 TraesCS2B01G419200 chr2D 85.714 539 31 24 408 926 511674645 511675157 1.890000e-145 527.0
18 TraesCS2B01G419200 chr2D 87.531 401 17 6 13 407 511674237 511674610 4.250000e-117 433.0
19 TraesCS2B01G419200 chr2D 86.777 121 11 4 5417 5533 511692211 511692330 6.240000e-26 130.0
20 TraesCS2B01G419200 chr1A 91.577 463 31 4 2563 3025 68461394 68461848 3.900000e-177 632.0
21 TraesCS2B01G419200 chr1D 86.716 271 24 7 2556 2825 69199795 69200054 2.700000e-74 291.0
22 TraesCS2B01G419200 chr1D 78.808 151 19 12 7036 7178 279521596 279521451 1.060000e-13 89.8
23 TraesCS2B01G419200 chr6D 75.789 570 94 28 5859 6416 335063247 335062710 1.650000e-61 248.0
24 TraesCS2B01G419200 chr6D 83.824 136 21 1 1628 1762 335068120 335067985 2.240000e-25 128.0
25 TraesCS2B01G419200 chr6B 76.155 541 87 27 5859 6387 485542395 485542905 5.940000e-61 246.0
26 TraesCS2B01G419200 chr6B 83.088 136 22 1 1628 1762 485537658 485537793 1.040000e-23 122.0
27 TraesCS2B01G419200 chr6B 77.778 126 14 10 7037 7154 616864142 616864261 1.780000e-06 65.8
28 TraesCS2B01G419200 chr6A 75.970 541 88 27 5859 6387 474328186 474327676 2.760000e-59 241.0
29 TraesCS2B01G419200 chr6A 83.206 131 22 0 1628 1758 474333562 474333432 3.750000e-23 121.0
30 TraesCS2B01G419200 chr1B 88.372 86 9 1 6671 6755 39223270 39223355 1.360000e-17 102.0
31 TraesCS2B01G419200 chr1B 85.870 92 12 1 6670 6760 497472958 497472867 6.330000e-16 97.1
32 TraesCS2B01G419200 chr3B 93.220 59 4 0 6965 7023 28313039 28312981 3.810000e-13 87.9
33 TraesCS2B01G419200 chr3B 88.889 63 6 1 6695 6756 663290937 663290875 8.240000e-10 76.8
34 TraesCS2B01G419200 chr3B 89.091 55 5 1 6969 7023 546184863 546184916 4.960000e-07 67.6
35 TraesCS2B01G419200 chr3B 84.848 66 7 2 7040 7103 150226528 150226464 6.420000e-06 63.9
36 TraesCS2B01G419200 chr3B 84.848 66 7 2 7040 7103 157720781 157720717 6.420000e-06 63.9
37 TraesCS2B01G419200 chr3B 86.667 60 5 2 7040 7097 174838477 174838535 6.420000e-06 63.9
38 TraesCS2B01G419200 chr3B 84.848 66 7 2 7040 7103 554826015 554825951 6.420000e-06 63.9
39 TraesCS2B01G419200 chr5D 86.250 80 10 1 6671 6749 312136073 312136152 1.370000e-12 86.1
40 TraesCS2B01G419200 chr3D 86.667 75 8 2 6683 6756 61319383 61319456 1.770000e-11 82.4
41 TraesCS2B01G419200 chr3D 82.955 88 13 2 6670 6755 556145704 556145791 2.290000e-10 78.7
42 TraesCS2B01G419200 chr3D 72.468 316 58 19 6882 7192 50884625 50884916 2.960000e-09 75.0
43 TraesCS2B01G419200 chr7D 87.324 71 7 2 6953 7023 633249250 633249318 6.370000e-11 80.5
44 TraesCS2B01G419200 chr5A 80.952 105 17 3 6659 6762 569803194 569803296 6.370000e-11 80.5
45 TraesCS2B01G419200 chr3A 83.333 90 12 3 6666 6753 358268349 358268437 6.370000e-11 80.5
46 TraesCS2B01G419200 chr3A 90.566 53 4 1 6969 7021 617435230 617435179 1.380000e-07 69.4
47 TraesCS2B01G419200 chr3A 85.938 64 8 1 6960 7023 11763761 11763823 4.960000e-07 67.6
48 TraesCS2B01G419200 chr7A 77.600 125 26 2 1630 1753 124070546 124070423 2.960000e-09 75.0
49 TraesCS2B01G419200 chr4A 84.746 59 7 2 6965 7023 101942785 101942841 2.990000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G419200 chr2B 600739018 600746678 7660 False 4782.666667 14148 90.877333 1 7661 3 chr2B.!!$F1 7660
1 TraesCS2B01G419200 chr2A 654906259 654914122 7863 False 1172.625000 3398 89.359250 1 7661 8 chr2A.!!$F2 7660
2 TraesCS2B01G419200 chr2D 511687899 511694699 6800 False 1704.200000 3110 88.418600 908 7661 5 chr2D.!!$F2 6753
3 TraesCS2B01G419200 chr2D 511674237 511675157 920 False 480.000000 527 86.622500 13 926 2 chr2D.!!$F1 913
4 TraesCS2B01G419200 chr6D 335062710 335063247 537 True 248.000000 248 75.789000 5859 6416 1 chr6D.!!$R1 557
5 TraesCS2B01G419200 chr6B 485542395 485542905 510 False 246.000000 246 76.155000 5859 6387 1 chr6B.!!$F2 528
6 TraesCS2B01G419200 chr6A 474327676 474328186 510 True 241.000000 241 75.970000 5859 6387 1 chr6A.!!$R1 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
628 724 0.040067 GCGGACAAAGCAGGTTTCTG 60.040 55.0 0.00 0.0 43.64 3.02 F
1887 2072 0.036388 GAGAACCGGCAGTTGATGGA 60.036 55.0 0.00 0.0 39.40 3.41 F
3110 3335 0.111253 CCCAAACTCACCTGCTTCCT 59.889 55.0 0.00 0.0 0.00 3.36 F
3148 3404 0.034337 TCAACCGTGCTAGTTCCACC 59.966 55.0 0.00 0.0 0.00 4.61 F
3161 3445 0.179015 TTCCACCGGTTTGCTGCTTA 60.179 50.0 2.97 0.0 0.00 3.09 F
4424 4936 0.333993 ATGGAGCAAACTGGATGGCT 59.666 50.0 0.00 0.0 39.75 4.75 F
5919 6551 0.033504 AGCTCAACGGTGGTGTACAG 59.966 55.0 0.00 0.0 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2032 2220 0.037790 GGCTGAGCTCGTTCTTGAGT 60.038 55.0 9.64 0.0 38.28 3.41 R
3148 3404 0.167908 TCGCAATAAGCAGCAAACCG 59.832 50.0 0.00 0.0 46.13 4.44 R
4082 4594 0.392863 TGGTGCACGGAGGATTCATG 60.393 55.0 11.45 0.0 0.00 3.07 R
4807 5319 0.690762 TTCCCAAGACTACAGCACCC 59.309 55.0 0.00 0.0 0.00 4.61 R
4996 5508 0.698818 AAAAAGGAGGATCACGCCCT 59.301 50.0 0.00 0.0 40.38 5.19 R
5972 6604 0.250209 GGCAGGAGCATGATCGATGT 60.250 55.0 0.54 0.0 44.61 3.06 R
7640 8388 1.172180 TGAGGGAAACAGCCAAAGCG 61.172 55.0 0.00 0.0 46.67 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
190 224 1.371758 CATCCACGAGATACGGGCG 60.372 63.158 0.00 0.00 44.90 6.13
192 226 0.535780 ATCCACGAGATACGGGCGTA 60.536 55.000 0.00 0.00 44.90 4.42
193 227 0.535780 TCCACGAGATACGGGCGTAT 60.536 55.000 0.00 0.00 44.90 3.06
199 233 1.888736 GATACGGGCGTATCCTCCC 59.111 63.158 3.92 0.77 46.68 4.30
200 234 1.602327 GATACGGGCGTATCCTCCCC 61.602 65.000 3.92 0.23 46.68 4.81
201 235 2.090377 ATACGGGCGTATCCTCCCCT 62.090 60.000 0.00 0.00 36.69 4.79
202 236 2.703675 TACGGGCGTATCCTCCCCTC 62.704 65.000 0.00 0.00 39.39 4.30
203 237 2.201771 GGGCGTATCCTCCCCTCT 59.798 66.667 0.00 0.00 36.50 3.69
204 238 1.463824 GGGCGTATCCTCCCCTCTA 59.536 63.158 0.00 0.00 36.50 2.43
205 239 0.612453 GGGCGTATCCTCCCCTCTAG 60.612 65.000 0.00 0.00 36.50 2.43
206 240 1.252215 GGCGTATCCTCCCCTCTAGC 61.252 65.000 0.00 0.00 0.00 3.42
207 241 0.251430 GCGTATCCTCCCCTCTAGCT 60.251 60.000 0.00 0.00 0.00 3.32
208 242 1.828979 CGTATCCTCCCCTCTAGCTC 58.171 60.000 0.00 0.00 0.00 4.09
209 243 1.353022 CGTATCCTCCCCTCTAGCTCT 59.647 57.143 0.00 0.00 0.00 4.09
210 244 2.572556 CGTATCCTCCCCTCTAGCTCTA 59.427 54.545 0.00 0.00 0.00 2.43
211 245 3.370103 CGTATCCTCCCCTCTAGCTCTAG 60.370 56.522 0.00 0.00 34.56 2.43
212 246 0.774908 TCCTCCCCTCTAGCTCTAGC 59.225 60.000 0.00 0.00 42.49 3.42
213 247 0.251608 CCTCCCCTCTAGCTCTAGCC 60.252 65.000 0.00 0.00 43.38 3.93
214 248 0.251608 CTCCCCTCTAGCTCTAGCCC 60.252 65.000 0.00 0.00 43.38 5.19
215 249 1.229051 CCCCTCTAGCTCTAGCCCC 60.229 68.421 0.00 0.00 43.38 5.80
216 250 1.229051 CCCTCTAGCTCTAGCCCCC 60.229 68.421 0.00 0.00 43.38 5.40
245 279 2.666862 CTTGGGTACGCGCACCAA 60.667 61.111 28.81 25.42 41.66 3.67
246 280 2.961669 CTTGGGTACGCGCACCAAC 61.962 63.158 28.81 13.78 39.22 3.77
247 281 3.752088 TTGGGTACGCGCACCAACA 62.752 57.895 28.81 16.25 39.22 3.33
248 282 2.973600 GGGTACGCGCACCAACAA 60.974 61.111 28.81 0.00 40.65 2.83
249 283 2.554272 GGTACGCGCACCAACAAG 59.446 61.111 23.64 0.00 38.55 3.16
250 284 2.127383 GTACGCGCACCAACAAGC 60.127 61.111 5.73 0.00 0.00 4.01
258 292 3.943691 ACCAACAAGCGCCCCGTA 61.944 61.111 2.29 0.00 0.00 4.02
259 293 3.428282 CCAACAAGCGCCCCGTAC 61.428 66.667 2.29 0.00 0.00 3.67
260 294 2.666862 CAACAAGCGCCCCGTACA 60.667 61.111 2.29 0.00 0.00 2.90
261 295 2.667199 AACAAGCGCCCCGTACAC 60.667 61.111 2.29 0.00 0.00 2.90
355 391 1.186200 GGAGCATTCTGGTTTTCCCC 58.814 55.000 0.00 0.00 39.73 4.81
369 405 1.050204 TTCCCCTTCTCCGAAACGAA 58.950 50.000 0.00 0.00 0.00 3.85
370 406 0.319405 TCCCCTTCTCCGAAACGAAC 59.681 55.000 0.00 0.00 0.00 3.95
371 407 0.672711 CCCCTTCTCCGAAACGAACC 60.673 60.000 0.00 0.00 0.00 3.62
375 411 3.116531 CTCCGAAACGAACCGGCC 61.117 66.667 0.00 0.00 44.96 6.13
480 558 4.107051 CGGCAGGGCTCGCTTTTG 62.107 66.667 0.64 0.00 0.00 2.44
481 559 2.672996 GGCAGGGCTCGCTTTTGA 60.673 61.111 0.64 0.00 0.00 2.69
482 560 2.694760 GGCAGGGCTCGCTTTTGAG 61.695 63.158 0.64 0.00 39.05 3.02
483 561 1.672356 GCAGGGCTCGCTTTTGAGA 60.672 57.895 0.00 0.00 38.28 3.27
557 648 4.803426 CAGACGGACGAGCCAGCC 62.803 72.222 0.00 0.00 35.94 4.85
572 663 2.511145 GCCAGCCAGCGAGAGAAG 60.511 66.667 0.00 0.00 0.00 2.85
595 691 2.841215 CAAAAAGGCGGGGATACGATA 58.159 47.619 0.00 0.00 35.47 2.92
599 695 2.126189 GCGGGGATACGATACGGC 60.126 66.667 0.00 0.00 35.47 5.68
600 696 2.922950 GCGGGGATACGATACGGCA 61.923 63.158 0.00 0.00 35.47 5.69
601 697 1.661480 CGGGGATACGATACGGCAA 59.339 57.895 0.00 0.00 35.47 4.52
602 698 0.665369 CGGGGATACGATACGGCAAC 60.665 60.000 0.00 0.00 35.47 4.17
623 719 0.751643 AACAAGCGGACAAAGCAGGT 60.752 50.000 0.00 0.00 37.01 4.00
624 720 0.751643 ACAAGCGGACAAAGCAGGTT 60.752 50.000 0.00 0.00 37.01 3.50
625 721 0.385390 CAAGCGGACAAAGCAGGTTT 59.615 50.000 0.00 0.00 37.01 3.27
626 722 0.668535 AAGCGGACAAAGCAGGTTTC 59.331 50.000 0.00 0.00 37.01 2.78
627 723 0.179018 AGCGGACAAAGCAGGTTTCT 60.179 50.000 0.00 0.00 37.01 2.52
628 724 0.040067 GCGGACAAAGCAGGTTTCTG 60.040 55.000 0.00 0.00 43.64 3.02
660 760 3.062042 CAAAGCAGAAGGTTTTGCCATC 58.938 45.455 1.81 0.00 42.39 3.51
679 779 0.814410 CGCCATGCAAGAGAGCTCAT 60.814 55.000 17.77 0.20 34.99 2.90
680 780 0.945813 GCCATGCAAGAGAGCTCATC 59.054 55.000 17.77 10.55 34.99 2.92
699 820 2.813907 TCAGAGAGAGAAACCCCAGAG 58.186 52.381 0.00 0.00 0.00 3.35
725 847 1.647334 AAAACCCCGACCCACTTCCA 61.647 55.000 0.00 0.00 0.00 3.53
759 886 3.777925 CGCCGCTCCACGTTCTTG 61.778 66.667 0.00 0.00 41.42 3.02
769 904 1.302033 ACGTTCTTGCCCTGCTCTG 60.302 57.895 0.00 0.00 0.00 3.35
1031 1169 1.969862 CTTTGCCCTGCCTTCTTGG 59.030 57.895 0.00 0.00 39.35 3.61
1042 1180 1.284313 CCTTCTTGGCCCTCTCTCTT 58.716 55.000 0.00 0.00 0.00 2.85
1060 1198 1.276421 CTTTCTCGCTTCTCCTCCCAA 59.724 52.381 0.00 0.00 0.00 4.12
1061 1199 1.348064 TTCTCGCTTCTCCTCCCAAA 58.652 50.000 0.00 0.00 0.00 3.28
1062 1200 0.898320 TCTCGCTTCTCCTCCCAAAG 59.102 55.000 0.00 0.00 0.00 2.77
1063 1201 0.898320 CTCGCTTCTCCTCCCAAAGA 59.102 55.000 0.00 0.00 0.00 2.52
1064 1202 0.898320 TCGCTTCTCCTCCCAAAGAG 59.102 55.000 0.00 0.00 42.83 2.85
1156 1306 1.077663 TGAACGGGTTCCCCTACTACT 59.922 52.381 8.93 0.00 42.67 2.57
1338 1488 6.685657 CCTTTTTCTCTTCTTTGATCCCTTG 58.314 40.000 0.00 0.00 0.00 3.61
1389 1539 2.261671 GCGGCGTGAAGGAAGAGA 59.738 61.111 9.37 0.00 0.00 3.10
1394 1544 1.014564 GCGTGAAGGAAGAGAACGGG 61.015 60.000 0.00 0.00 34.91 5.28
1430 1580 3.374402 CACCTCCACGCCGTCTCT 61.374 66.667 0.00 0.00 0.00 3.10
1445 1595 2.362503 TCTGGAGGCGATGTCGGT 60.363 61.111 4.44 0.00 40.23 4.69
1502 1652 3.043713 CACGGCAAGCGCAAGAGA 61.044 61.111 11.47 0.00 41.24 3.10
1506 1656 2.359230 GCAAGCGCAAGAGACCCT 60.359 61.111 11.47 0.00 43.02 4.34
1821 2006 0.234884 GCACTTACAACACGGCTGAC 59.765 55.000 0.00 0.00 0.00 3.51
1834 2019 1.217779 GCTGACTCCTCTCTGTGGC 59.782 63.158 0.00 0.00 0.00 5.01
1875 2060 2.049156 TCTGCTGCACGAGAACCG 60.049 61.111 0.00 0.00 45.44 4.44
1887 2072 0.036388 GAGAACCGGCAGTTGATGGA 60.036 55.000 0.00 0.00 39.40 3.41
2054 2242 0.459237 CAAGAACGAGCTCAGCCGAT 60.459 55.000 15.40 2.52 0.00 4.18
2095 2283 1.075601 TCCTTGGCAGGTCCATTTCT 58.924 50.000 0.00 0.00 46.04 2.52
2213 2401 0.178992 CAGTCCCTCCAGCCAAACAA 60.179 55.000 0.00 0.00 0.00 2.83
2231 2419 0.180171 AATGGGAATGGCGATCACGA 59.820 50.000 0.00 0.00 42.66 4.35
2242 2430 1.081556 CGATCACGACCATGGCGAAA 61.082 55.000 27.68 17.69 42.66 3.46
2296 2484 1.358877 CGACGAGTGCAATGGATGAA 58.641 50.000 2.36 0.00 0.00 2.57
2394 2582 2.668457 CGCTCAACCATGAAGTGTACTC 59.332 50.000 0.00 0.00 34.49 2.59
2410 2598 0.961358 ACTCGAGGACCTTCTCACCG 60.961 60.000 18.41 0.00 33.59 4.94
2411 2599 0.961358 CTCGAGGACCTTCTCACCGT 60.961 60.000 3.91 0.00 33.59 4.83
2552 2758 3.130693 ACTCTCGTTGCTATTCCCTGTAC 59.869 47.826 0.00 0.00 0.00 2.90
2573 2779 2.159653 CGTCTGAACTTACATTGCCTGC 60.160 50.000 0.00 0.00 0.00 4.85
2700 2907 1.007336 GCATTGCTGCTTGTGAGTGC 61.007 55.000 0.16 0.00 45.32 4.40
2716 2924 2.604914 GAGTGCCGTGTTGATCAGTATG 59.395 50.000 0.00 0.00 37.54 2.39
2717 2925 2.028112 AGTGCCGTGTTGATCAGTATGT 60.028 45.455 0.00 0.00 37.40 2.29
2723 2931 4.562789 CCGTGTTGATCAGTATGTAGTGTG 59.437 45.833 0.00 0.00 37.40 3.82
2745 2953 5.666969 GCATATGCACGTCTTATGGTTAA 57.333 39.130 22.84 0.00 41.59 2.01
2773 2981 5.738619 TCTAGCATCCACTAAGTGTTTCA 57.261 39.130 0.00 0.00 0.00 2.69
2960 3168 4.675510 CATCCACCACTGCAAATATGAAC 58.324 43.478 0.00 0.00 0.00 3.18
3039 3263 4.896482 AGGTACACCATCCTCTCTACATTC 59.104 45.833 0.38 0.00 38.89 2.67
3040 3264 4.649674 GGTACACCATCCTCTCTACATTCA 59.350 45.833 0.00 0.00 35.64 2.57
3041 3265 4.744795 ACACCATCCTCTCTACATTCAC 57.255 45.455 0.00 0.00 0.00 3.18
3042 3266 4.357325 ACACCATCCTCTCTACATTCACT 58.643 43.478 0.00 0.00 0.00 3.41
3043 3267 4.780021 ACACCATCCTCTCTACATTCACTT 59.220 41.667 0.00 0.00 0.00 3.16
3044 3268 5.114780 CACCATCCTCTCTACATTCACTTG 58.885 45.833 0.00 0.00 0.00 3.16
3045 3269 4.780021 ACCATCCTCTCTACATTCACTTGT 59.220 41.667 0.00 0.00 0.00 3.16
3046 3270 5.249393 ACCATCCTCTCTACATTCACTTGTT 59.751 40.000 0.00 0.00 0.00 2.83
3047 3271 5.814705 CCATCCTCTCTACATTCACTTGTTC 59.185 44.000 0.00 0.00 0.00 3.18
3048 3272 6.401394 CATCCTCTCTACATTCACTTGTTCA 58.599 40.000 0.00 0.00 0.00 3.18
3049 3273 6.611613 TCCTCTCTACATTCACTTGTTCAT 57.388 37.500 0.00 0.00 0.00 2.57
3050 3274 7.718334 TCCTCTCTACATTCACTTGTTCATA 57.282 36.000 0.00 0.00 0.00 2.15
3051 3275 8.311395 TCCTCTCTACATTCACTTGTTCATAT 57.689 34.615 0.00 0.00 0.00 1.78
3052 3276 8.417106 TCCTCTCTACATTCACTTGTTCATATC 58.583 37.037 0.00 0.00 0.00 1.63
3053 3277 8.200120 CCTCTCTACATTCACTTGTTCATATCA 58.800 37.037 0.00 0.00 0.00 2.15
3054 3278 9.761504 CTCTCTACATTCACTTGTTCATATCAT 57.238 33.333 0.00 0.00 0.00 2.45
3089 3313 4.178540 GCAATTGACAGCAATGTTAGCAT 58.821 39.130 10.34 0.00 43.71 3.79
3100 3325 2.284754 TGTTAGCATGCCCAAACTCA 57.715 45.000 15.66 0.90 0.00 3.41
3109 3334 1.527433 GCCCAAACTCACCTGCTTCC 61.527 60.000 0.00 0.00 0.00 3.46
3110 3335 0.111253 CCCAAACTCACCTGCTTCCT 59.889 55.000 0.00 0.00 0.00 3.36
3111 3336 1.351017 CCCAAACTCACCTGCTTCCTA 59.649 52.381 0.00 0.00 0.00 2.94
3113 3338 2.616510 CCAAACTCACCTGCTTCCTAGG 60.617 54.545 0.82 0.82 41.22 3.02
3114 3339 2.303022 CAAACTCACCTGCTTCCTAGGA 59.697 50.000 7.62 7.62 38.71 2.94
3126 3382 0.261991 TCCTAGGAGGCTACCACCAG 59.738 60.000 7.62 0.00 36.71 4.00
3148 3404 0.034337 TCAACCGTGCTAGTTCCACC 59.966 55.000 0.00 0.00 0.00 4.61
3161 3445 0.179015 TTCCACCGGTTTGCTGCTTA 60.179 50.000 2.97 0.00 0.00 3.09
3186 3470 2.409378 CGAAATGCATGTTTGTTCCAGC 59.591 45.455 0.00 0.00 0.00 4.85
3190 3474 2.309613 TGCATGTTTGTTCCAGCTCTT 58.690 42.857 0.00 0.00 0.00 2.85
3195 3529 2.886523 TGTTTGTTCCAGCTCTTCATGG 59.113 45.455 0.00 0.00 37.97 3.66
3202 3536 4.412796 TCCAGCTCTTCATGGTATTGAG 57.587 45.455 0.00 0.00 37.84 3.02
3210 3544 6.550938 TCTTCATGGTATTGAGTGATCACT 57.449 37.500 28.23 28.23 45.84 3.41
3215 3549 3.007831 TGGTATTGAGTGATCACTGTGCA 59.992 43.478 32.50 20.73 42.66 4.57
3224 3558 6.137794 AGTGATCACTGTGCAGTATAGTAC 57.862 41.667 27.37 0.00 40.20 2.73
3231 3565 5.802451 CACTGTGCAGTATAGTACTCACAAG 59.198 44.000 12.32 9.58 41.56 3.16
3232 3566 5.477291 ACTGTGCAGTATAGTACTCACAAGT 59.523 40.000 12.32 10.03 41.56 3.16
3236 3571 7.036220 GTGCAGTATAGTACTCACAAGTCAAT 58.964 38.462 0.00 0.00 36.76 2.57
3254 3599 8.598041 CAAGTCAATAGGGTAGGCTATAGATTT 58.402 37.037 3.21 0.00 0.00 2.17
3257 3602 8.198778 GTCAATAGGGTAGGCTATAGATTTAGC 58.801 40.741 3.21 2.07 43.16 3.09
3262 3607 7.246763 AGGGTAGGCTATAGATTTAGCAACTA 58.753 38.462 3.21 0.00 45.21 2.24
3281 3626 2.592102 ATGGTTGCAAGTCCATCACT 57.408 45.000 14.27 0.00 39.92 3.41
3304 3649 3.776795 GCAAGTTACGTAATCGCTTGTCG 60.777 47.826 25.59 11.20 41.18 4.35
3430 3775 8.571336 CCAATTCTTCAAGCGAAAATCCTATAT 58.429 33.333 0.00 0.00 0.00 0.86
3463 3808 8.080417 CCCACAATATCATCAATTTGTCTCATC 58.920 37.037 0.00 0.00 30.23 2.92
3490 3835 7.332182 GTCGAGAATTTAAGATCTTGACCACTT 59.668 37.037 18.47 3.19 45.39 3.16
3491 3836 7.545965 TCGAGAATTTAAGATCTTGACCACTTC 59.454 37.037 18.47 11.20 32.39 3.01
3513 3858 4.935205 TCGTCTATTGTTTGTCTTCATGGG 59.065 41.667 0.00 0.00 0.00 4.00
3531 3876 6.708285 TCATGGGAGGTACTTTTAGTCTTTC 58.292 40.000 0.00 0.00 41.55 2.62
3703 4094 7.721842 TGTTATGTGGTTTCCTGTTTATCTTCA 59.278 33.333 0.00 0.00 0.00 3.02
3718 4109 8.085909 TGTTTATCTTCACTTCAACGACTCATA 58.914 33.333 0.00 0.00 0.00 2.15
3751 4142 2.963432 GATGCAATCAAAAGTGTGGGG 58.037 47.619 0.00 0.00 44.70 4.96
3773 4164 8.527810 TGGGGAAATGTGTCAAATTATAGTTTC 58.472 33.333 0.00 0.00 0.00 2.78
3813 4285 6.283544 TCGGTACATGTTACAATGTAGGAA 57.716 37.500 2.30 0.00 42.27 3.36
3989 4501 1.835494 ATTGCACTGCAGAGCTTGAT 58.165 45.000 31.56 20.93 40.61 2.57
3995 4507 2.681344 CACTGCAGAGCTTGATATTGCA 59.319 45.455 23.35 0.00 41.97 4.08
4003 4515 4.957954 AGAGCTTGATATTGCATTTTGGGA 59.042 37.500 0.00 0.00 0.00 4.37
4082 4594 9.772973 TTACATGGGTTGAACATACAGTATATC 57.227 33.333 0.00 0.00 0.00 1.63
4234 4746 7.877003 ACTCGTCAGGTACAGAAATATGATAG 58.123 38.462 0.00 0.00 0.00 2.08
4422 4934 2.426024 CTGAATGGAGCAAACTGGATGG 59.574 50.000 0.00 0.00 0.00 3.51
4424 4936 0.333993 ATGGAGCAAACTGGATGGCT 59.666 50.000 0.00 0.00 39.75 4.75
4584 5096 1.741770 GCAATGAGAGAACGCGGGT 60.742 57.895 12.47 0.00 0.00 5.28
4770 5282 5.294356 TGCATGTTTAACTGACTCGTAGTT 58.706 37.500 0.00 0.00 41.06 2.24
4773 5285 5.518848 TGTTTAACTGACTCGTAGTTGGA 57.481 39.130 0.00 0.00 38.70 3.53
4807 5319 4.746115 GTGATCTAGAAGCTGAGCTCATTG 59.254 45.833 18.63 7.82 38.25 2.82
4814 5326 1.654954 GCTGAGCTCATTGGGTGCTG 61.655 60.000 18.63 2.96 45.79 4.41
4856 5368 4.855531 TCACTTTTAAGCTTTTCGGAAGC 58.144 39.130 3.20 14.15 43.31 3.86
4900 5412 6.942532 AAACTTGTTTCTGTGCTCTGAATA 57.057 33.333 8.62 0.38 33.00 1.75
4905 5417 5.702865 TGTTTCTGTGCTCTGAATATTTGC 58.297 37.500 8.62 0.00 33.00 3.68
4912 5424 5.884232 TGTGCTCTGAATATTTGCTCAGAAT 59.116 36.000 6.36 0.00 45.61 2.40
4952 5464 9.094578 AGATATGTGTCAGGCATAGTTAATACT 57.905 33.333 0.00 0.00 38.44 2.12
4953 5465 9.712305 GATATGTGTCAGGCATAGTTAATACTT 57.288 33.333 0.00 0.00 35.78 2.24
4996 5508 2.359848 GCATTGCAATGATGTAGAGGCA 59.640 45.455 37.36 0.00 38.70 4.75
5049 5569 3.759618 TGAGCATGATGACAAATGAAGCA 59.240 39.130 0.00 0.00 0.00 3.91
5076 5596 7.606456 TGTGAAGTTGGGAGTTATATTCTTGAC 59.394 37.037 0.00 0.00 0.00 3.18
5111 5632 4.098914 TGTTTTCATCAGCCTTGGTACT 57.901 40.909 0.00 0.00 0.00 2.73
5113 5634 5.815581 TGTTTTCATCAGCCTTGGTACTAT 58.184 37.500 0.00 0.00 0.00 2.12
5116 5637 7.885922 TGTTTTCATCAGCCTTGGTACTATTTA 59.114 33.333 0.00 0.00 0.00 1.40
5158 5679 3.950397 TGGTACTTTTCGGATTCATGCT 58.050 40.909 0.00 0.00 0.00 3.79
5162 5683 3.411446 ACTTTTCGGATTCATGCTGTCA 58.589 40.909 0.00 0.00 0.00 3.58
5181 5702 6.241207 TGTCAAAGCTTGAATTACTACAGC 57.759 37.500 0.00 0.00 42.15 4.40
5184 5705 6.147821 GTCAAAGCTTGAATTACTACAGCTGA 59.852 38.462 23.35 2.95 42.15 4.26
5332 5862 6.040842 ACAGCAATTATTATTTTCTCGGGCAT 59.959 34.615 0.00 0.00 0.00 4.40
5334 5864 6.265196 AGCAATTATTATTTTCTCGGGCATGA 59.735 34.615 0.00 0.00 0.00 3.07
5454 5998 2.930040 CGTTTAGGATTCGTGCAGTCAT 59.070 45.455 0.00 0.00 0.00 3.06
5475 6019 4.227512 TGCTTGAATTACTGCAGTTGTG 57.772 40.909 27.06 9.61 0.00 3.33
5605 6226 3.250040 GGACACGTATGAAAACAGCAAGT 59.750 43.478 0.00 0.00 0.00 3.16
5688 6311 4.529769 TGTGCCATTTTGGGTGATCATAAA 59.470 37.500 0.00 0.00 38.19 1.40
5695 6318 8.137437 CCATTTTGGGTGATCATAAACATCTAC 58.863 37.037 0.00 0.00 32.67 2.59
5696 6319 6.918892 TTTGGGTGATCATAAACATCTACG 57.081 37.500 0.00 0.00 0.00 3.51
5697 6320 5.607939 TGGGTGATCATAAACATCTACGT 57.392 39.130 0.00 0.00 0.00 3.57
5698 6321 6.718522 TGGGTGATCATAAACATCTACGTA 57.281 37.500 0.00 0.00 0.00 3.57
5703 6326 8.495949 GGTGATCATAAACATCTACGTAATTGG 58.504 37.037 0.00 0.00 0.00 3.16
5715 6338 2.482721 ACGTAATTGGCAGAAAACCTCG 59.517 45.455 0.00 0.00 0.00 4.63
5773 6396 2.229792 TCCTGCTTGATTTGTGTGACC 58.770 47.619 0.00 0.00 0.00 4.02
5822 6453 5.475719 TCTTACCTCAACCGTAATGTCTTG 58.524 41.667 0.00 0.00 0.00 3.02
5907 6539 1.400846 CACAGATGCATCCAGCTCAAC 59.599 52.381 23.06 0.00 45.94 3.18
5919 6551 0.033504 AGCTCAACGGTGGTGTACAG 59.966 55.000 0.00 0.00 0.00 2.74
6003 6635 2.046314 CCTGCCATCCGGTTTCGT 60.046 61.111 0.00 0.00 33.95 3.85
6310 6950 3.305516 GGCCTTTGCTGGGTGGTG 61.306 66.667 0.00 0.00 37.74 4.17
6361 7006 2.282887 AATGGTGGTGGTTCGGGC 60.283 61.111 0.00 0.00 0.00 6.13
6439 7086 3.007398 ACAGTTGGAGGCTAGTCTTCTTG 59.993 47.826 3.82 2.83 0.00 3.02
6476 7123 2.436115 GCCCGGACTTGGTAGTGC 60.436 66.667 0.73 0.00 39.17 4.40
6502 7149 5.652452 GGTAGCTATGAGGTTCCATGTTTTT 59.348 40.000 0.00 0.00 33.95 1.94
6504 7151 4.082026 AGCTATGAGGTTCCATGTTTTTGC 60.082 41.667 0.00 0.00 0.00 3.68
6505 7152 4.321899 GCTATGAGGTTCCATGTTTTTGCA 60.322 41.667 0.00 0.00 0.00 4.08
6567 7214 0.737019 GCAATGTTCCGTTGGCCATG 60.737 55.000 6.09 1.49 31.70 3.66
6601 7248 1.153349 GAGGCAGCCTTAGGTTCCG 60.153 63.158 17.46 0.00 31.76 4.30
6615 7262 2.434702 AGGTTCCGAGAATGGTATCCAC 59.565 50.000 0.00 0.00 35.80 4.02
6632 7281 0.101219 CACCGAGCGATCAGTCATCA 59.899 55.000 0.00 0.00 0.00 3.07
6633 7282 1.035923 ACCGAGCGATCAGTCATCAT 58.964 50.000 0.00 0.00 0.00 2.45
6692 7348 4.841443 ACACCCTCCGTTTCAAAATAAC 57.159 40.909 0.00 0.00 0.00 1.89
6698 7354 5.009210 CCCTCCGTTTCAAAATAACTGTCAA 59.991 40.000 0.00 0.00 0.00 3.18
6700 7356 6.017440 CCTCCGTTTCAAAATAACTGTCAAGA 60.017 38.462 0.00 0.00 0.00 3.02
6716 7372 8.506168 ACTGTCAAGATTTTAGTTCAGTTTGA 57.494 30.769 0.00 0.00 32.15 2.69
6717 7373 8.956426 ACTGTCAAGATTTTAGTTCAGTTTGAA 58.044 29.630 0.00 0.00 33.32 2.69
6734 7390 7.122055 TCAGTTTGAACTAAAACCATGACACTT 59.878 33.333 0.00 0.00 40.26 3.16
6741 7397 9.959749 GAACTAAAACCATGACACTTATTTTGA 57.040 29.630 0.00 0.00 0.00 2.69
6746 7402 8.606040 AAACCATGACACTTATTTTGAAATGG 57.394 30.769 0.00 0.00 36.93 3.16
6764 7420 4.927267 ATGGAGGGAGTAACATTCAACA 57.073 40.909 0.00 0.00 0.00 3.33
6837 7576 5.046591 TGGGACATGGAGTTTCTACACTTAG 60.047 44.000 0.00 0.00 0.00 2.18
6838 7577 4.870991 GGACATGGAGTTTCTACACTTAGC 59.129 45.833 0.00 0.00 0.00 3.09
6839 7578 5.337652 GGACATGGAGTTTCTACACTTAGCT 60.338 44.000 0.00 0.00 0.00 3.32
6840 7579 5.725362 ACATGGAGTTTCTACACTTAGCTC 58.275 41.667 0.00 0.00 0.00 4.09
6841 7580 5.246203 ACATGGAGTTTCTACACTTAGCTCA 59.754 40.000 0.00 0.00 0.00 4.26
6842 7581 5.801531 TGGAGTTTCTACACTTAGCTCAA 57.198 39.130 0.00 0.00 0.00 3.02
6843 7582 6.169557 TGGAGTTTCTACACTTAGCTCAAA 57.830 37.500 0.00 0.00 0.00 2.69
6844 7583 6.588204 TGGAGTTTCTACACTTAGCTCAAAA 58.412 36.000 0.00 0.00 0.00 2.44
6845 7584 6.706270 TGGAGTTTCTACACTTAGCTCAAAAG 59.294 38.462 0.00 0.00 0.00 2.27
6846 7585 6.147985 GGAGTTTCTACACTTAGCTCAAAAGG 59.852 42.308 0.00 0.00 0.00 3.11
6847 7586 5.470437 AGTTTCTACACTTAGCTCAAAAGGC 59.530 40.000 0.00 0.00 0.00 4.35
6848 7587 4.617253 TCTACACTTAGCTCAAAAGGCA 57.383 40.909 0.00 0.00 0.00 4.75
6849 7588 5.165961 TCTACACTTAGCTCAAAAGGCAT 57.834 39.130 0.00 0.00 0.00 4.40
6850 7589 5.178797 TCTACACTTAGCTCAAAAGGCATC 58.821 41.667 0.00 0.00 0.00 3.91
6851 7590 3.754965 ACACTTAGCTCAAAAGGCATCA 58.245 40.909 0.00 0.00 0.00 3.07
6852 7591 4.338879 ACACTTAGCTCAAAAGGCATCAT 58.661 39.130 0.00 0.00 0.00 2.45
6853 7592 4.397417 ACACTTAGCTCAAAAGGCATCATC 59.603 41.667 0.00 0.00 0.00 2.92
6854 7593 4.397103 CACTTAGCTCAAAAGGCATCATCA 59.603 41.667 0.00 0.00 0.00 3.07
6855 7594 5.067413 CACTTAGCTCAAAAGGCATCATCAT 59.933 40.000 0.00 0.00 0.00 2.45
6856 7595 5.067413 ACTTAGCTCAAAAGGCATCATCATG 59.933 40.000 0.00 0.00 0.00 3.07
6857 7596 3.628008 AGCTCAAAAGGCATCATCATGA 58.372 40.909 0.00 0.00 30.57 3.07
6858 7597 4.021229 AGCTCAAAAGGCATCATCATGAA 58.979 39.130 0.00 0.00 30.57 2.57
6859 7598 4.110482 GCTCAAAAGGCATCATCATGAAC 58.890 43.478 0.00 0.00 30.57 3.18
6860 7599 4.381185 GCTCAAAAGGCATCATCATGAACA 60.381 41.667 0.00 0.00 30.57 3.18
6861 7600 5.319140 TCAAAAGGCATCATCATGAACAG 57.681 39.130 0.00 0.00 30.57 3.16
6862 7601 4.768448 TCAAAAGGCATCATCATGAACAGT 59.232 37.500 0.00 0.00 30.57 3.55
6863 7602 5.945191 TCAAAAGGCATCATCATGAACAGTA 59.055 36.000 0.00 0.00 30.57 2.74
6864 7603 6.433716 TCAAAAGGCATCATCATGAACAGTAA 59.566 34.615 0.00 0.00 30.57 2.24
6865 7604 6.839124 AAAGGCATCATCATGAACAGTAAA 57.161 33.333 0.00 0.00 30.57 2.01
6866 7605 6.839124 AAGGCATCATCATGAACAGTAAAA 57.161 33.333 0.00 0.00 30.57 1.52
6867 7606 6.839124 AGGCATCATCATGAACAGTAAAAA 57.161 33.333 0.00 0.00 30.57 1.94
6890 7629 8.507470 AAAAATATCTCAAGACTTTTCGCAAC 57.493 30.769 0.00 0.00 0.00 4.17
6891 7630 6.801539 AATATCTCAAGACTTTTCGCAACA 57.198 33.333 0.00 0.00 0.00 3.33
6892 7631 6.801539 ATATCTCAAGACTTTTCGCAACAA 57.198 33.333 0.00 0.00 0.00 2.83
6893 7632 4.955925 TCTCAAGACTTTTCGCAACAAA 57.044 36.364 0.00 0.00 0.00 2.83
6894 7633 4.658071 TCTCAAGACTTTTCGCAACAAAC 58.342 39.130 0.00 0.00 0.00 2.93
6895 7634 4.155099 TCTCAAGACTTTTCGCAACAAACA 59.845 37.500 0.00 0.00 0.00 2.83
6896 7635 4.992688 TCAAGACTTTTCGCAACAAACAT 58.007 34.783 0.00 0.00 0.00 2.71
6897 7636 5.406649 TCAAGACTTTTCGCAACAAACATT 58.593 33.333 0.00 0.00 0.00 2.71
6898 7637 6.556212 TCAAGACTTTTCGCAACAAACATTA 58.444 32.000 0.00 0.00 0.00 1.90
6899 7638 6.470877 TCAAGACTTTTCGCAACAAACATTAC 59.529 34.615 0.00 0.00 0.00 1.89
6900 7639 6.131544 AGACTTTTCGCAACAAACATTACT 57.868 33.333 0.00 0.00 0.00 2.24
6901 7640 5.971202 AGACTTTTCGCAACAAACATTACTG 59.029 36.000 0.00 0.00 0.00 2.74
6902 7641 5.885881 ACTTTTCGCAACAAACATTACTGA 58.114 33.333 0.00 0.00 0.00 3.41
7025 7764 6.815089 AGCATTTTGGAGTGTTGATTTTGTA 58.185 32.000 0.00 0.00 0.00 2.41
7028 7767 8.394121 GCATTTTGGAGTGTTGATTTTGTAAAA 58.606 29.630 0.00 0.00 0.00 1.52
7052 7791 4.657814 ATTACCAGACCTCCACAAATGT 57.342 40.909 0.00 0.00 0.00 2.71
7104 7847 4.879104 AAACCATGCAATGTTTGTTGTG 57.121 36.364 14.10 0.00 44.81 3.33
7106 7849 3.719924 ACCATGCAATGTTTGTTGTGAG 58.280 40.909 0.00 0.00 44.81 3.51
7111 7854 6.183360 CCATGCAATGTTTGTTGTGAGAAAAA 60.183 34.615 0.00 0.00 44.81 1.94
7172 7917 7.807977 TTTACTATCCATGGAAAGAGCATTC 57.192 36.000 20.67 0.00 0.00 2.67
7173 7918 5.378230 ACTATCCATGGAAAGAGCATTCA 57.622 39.130 20.67 0.00 0.00 2.57
7178 7923 3.949754 CCATGGAAAGAGCATTCAAGCTA 59.050 43.478 5.56 0.00 46.75 3.32
7200 7945 5.921962 AAGGATTAGAAGACCATTTTGGC 57.078 39.130 0.00 0.00 42.67 4.52
7201 7946 5.198602 AGGATTAGAAGACCATTTTGGCT 57.801 39.130 0.00 0.00 42.67 4.75
7202 7947 5.196695 AGGATTAGAAGACCATTTTGGCTC 58.803 41.667 0.00 0.00 42.67 4.70
7203 7948 5.044550 AGGATTAGAAGACCATTTTGGCTCT 60.045 40.000 0.00 0.00 42.67 4.09
7204 7949 5.654209 GGATTAGAAGACCATTTTGGCTCTT 59.346 40.000 9.59 9.59 42.67 2.85
7205 7950 6.153510 GGATTAGAAGACCATTTTGGCTCTTT 59.846 38.462 10.58 6.16 42.67 2.52
7214 7959 5.362430 ACCATTTTGGCTCTTTGTAAACTCA 59.638 36.000 0.00 0.00 42.67 3.41
7239 7985 5.545063 TCATAAGTTCAGACAGTTGGACA 57.455 39.130 0.00 0.00 0.00 4.02
7252 7998 6.708054 AGACAGTTGGACAGTAAAATTCAGAG 59.292 38.462 0.00 0.00 0.00 3.35
7254 8000 4.452455 AGTTGGACAGTAAAATTCAGAGCG 59.548 41.667 0.00 0.00 0.00 5.03
7424 8171 0.443869 AAATACAGCAGCGCGTGAAG 59.556 50.000 8.43 3.90 0.00 3.02
7508 8255 2.688958 AGGCTACAACTACATCTCCGAC 59.311 50.000 0.00 0.00 0.00 4.79
7518 8265 3.034721 ACATCTCCGACGCTAAACAAA 57.965 42.857 0.00 0.00 0.00 2.83
7568 8315 7.956328 ACTATCTTACACACTGAGATACCAA 57.044 36.000 0.00 0.00 32.68 3.67
7577 8324 4.461081 ACACTGAGATACCAAGACAGAGTC 59.539 45.833 0.00 0.00 29.63 3.36
7579 8326 3.687125 TGAGATACCAAGACAGAGTCGT 58.313 45.455 0.00 0.00 37.67 4.34
7590 8338 4.079970 AGACAGAGTCGTGATAAACAGGA 58.920 43.478 0.00 0.00 40.41 3.86
7593 8341 5.892568 ACAGAGTCGTGATAAACAGGATAC 58.107 41.667 0.00 0.00 43.61 2.24
7598 8346 4.148348 GTCGTGATAAACAGGATACGCATC 59.852 45.833 0.00 0.00 43.61 3.91
7655 8403 1.662026 CGTTACGCTTTGGCTGTTTCC 60.662 52.381 0.00 0.00 36.09 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
152 164 1.153289 CGGGGTGAGCAGGAATCAG 60.153 63.158 0.00 0.00 0.00 2.90
153 165 2.669133 CCGGGGTGAGCAGGAATCA 61.669 63.158 0.00 0.00 0.00 2.57
155 167 4.115199 GCCGGGGTGAGCAGGAAT 62.115 66.667 2.18 0.00 0.00 3.01
190 224 3.623954 GCTAGAGCTAGAGGGGAGGATAC 60.624 56.522 8.65 0.00 38.21 2.24
192 226 1.357761 GCTAGAGCTAGAGGGGAGGAT 59.642 57.143 8.65 0.00 38.21 3.24
193 227 0.774908 GCTAGAGCTAGAGGGGAGGA 59.225 60.000 8.65 0.00 38.21 3.71
194 228 0.251608 GGCTAGAGCTAGAGGGGAGG 60.252 65.000 8.65 0.00 41.70 4.30
195 229 0.251608 GGGCTAGAGCTAGAGGGGAG 60.252 65.000 8.65 0.00 41.70 4.30
196 230 1.731324 GGGGCTAGAGCTAGAGGGGA 61.731 65.000 8.65 0.00 41.70 4.81
197 231 1.229051 GGGGCTAGAGCTAGAGGGG 60.229 68.421 8.65 0.00 41.70 4.79
198 232 1.229051 GGGGGCTAGAGCTAGAGGG 60.229 68.421 8.65 0.00 41.70 4.30
199 233 4.531351 GGGGGCTAGAGCTAGAGG 57.469 66.667 8.65 0.00 41.70 3.69
214 248 3.737172 CAAGCGCAACGGAAGGGG 61.737 66.667 11.47 0.00 0.00 4.79
215 249 3.737172 CCAAGCGCAACGGAAGGG 61.737 66.667 11.47 0.00 0.00 3.95
216 250 3.737172 CCCAAGCGCAACGGAAGG 61.737 66.667 11.47 0.00 0.00 3.46
217 251 1.669760 TACCCAAGCGCAACGGAAG 60.670 57.895 11.47 0.00 0.00 3.46
218 252 1.962306 GTACCCAAGCGCAACGGAA 60.962 57.895 11.47 0.00 0.00 4.30
219 253 2.357760 GTACCCAAGCGCAACGGA 60.358 61.111 11.47 0.00 0.00 4.69
220 254 3.784412 CGTACCCAAGCGCAACGG 61.784 66.667 11.47 7.75 0.00 4.44
252 286 3.841758 GTAGGGGCGTGTACGGGG 61.842 72.222 6.55 0.00 40.23 5.73
253 287 4.197498 CGTAGGGGCGTGTACGGG 62.197 72.222 6.55 0.00 38.67 5.28
337 373 2.222227 AGGGGAAAACCAGAATGCTC 57.778 50.000 0.00 0.00 42.91 4.26
339 375 2.493675 GAGAAGGGGAAAACCAGAATGC 59.506 50.000 0.00 0.00 42.91 3.56
341 377 2.290960 CGGAGAAGGGGAAAACCAGAAT 60.291 50.000 0.00 0.00 42.91 2.40
348 384 1.417145 TCGTTTCGGAGAAGGGGAAAA 59.583 47.619 0.00 0.00 45.90 2.29
476 554 1.298157 CTGCCGCGGTGATCTCAAAA 61.298 55.000 28.70 0.00 0.00 2.44
557 648 2.186384 CCCTTCTCTCGCTGGCTG 59.814 66.667 0.00 0.00 0.00 4.85
561 652 1.198637 CTTTTTGCCCTTCTCTCGCTG 59.801 52.381 0.00 0.00 0.00 5.18
572 663 1.380650 TATCCCCGCCTTTTTGCCC 60.381 57.895 0.00 0.00 0.00 5.36
595 691 3.591835 CCGCTTGTTGGTTGCCGT 61.592 61.111 0.00 0.00 0.00 5.68
599 695 1.838913 CTTTGTCCGCTTGTTGGTTG 58.161 50.000 0.00 0.00 0.00 3.77
600 696 0.102300 GCTTTGTCCGCTTGTTGGTT 59.898 50.000 0.00 0.00 0.00 3.67
601 697 1.034838 TGCTTTGTCCGCTTGTTGGT 61.035 50.000 0.00 0.00 0.00 3.67
602 698 0.318107 CTGCTTTGTCCGCTTGTTGG 60.318 55.000 0.00 0.00 0.00 3.77
623 719 2.690099 TTTGCGCGCAATGGCAGAAA 62.690 50.000 42.97 25.23 40.75 2.52
624 720 3.204878 TTTGCGCGCAATGGCAGAA 62.205 52.632 42.97 25.99 40.75 3.02
625 721 3.613952 CTTTGCGCGCAATGGCAGA 62.614 57.895 42.97 27.48 40.75 4.26
626 722 3.176578 CTTTGCGCGCAATGGCAG 61.177 61.111 42.97 32.81 40.75 4.85
629 725 3.176578 CTGCTTTGCGCGCAATGG 61.177 61.111 41.83 35.91 43.27 3.16
630 726 1.670971 CTTCTGCTTTGCGCGCAATG 61.671 55.000 42.97 41.11 43.27 2.82
631 727 1.443194 CTTCTGCTTTGCGCGCAAT 60.443 52.632 42.97 0.00 43.27 3.56
632 728 2.051076 CTTCTGCTTTGCGCGCAA 60.051 55.556 40.23 40.23 43.27 4.85
633 729 4.029186 CCTTCTGCTTTGCGCGCA 62.029 61.111 33.09 33.09 43.27 6.09
660 760 0.814410 ATGAGCTCTCTTGCATGGCG 60.814 55.000 16.19 0.00 34.99 5.69
679 779 2.558575 CCTCTGGGGTTTCTCTCTCTGA 60.559 54.545 0.00 0.00 0.00 3.27
680 780 1.830477 CCTCTGGGGTTTCTCTCTCTG 59.170 57.143 0.00 0.00 0.00 3.35
699 820 2.640989 GTCGGGGTTTTGTTCGCC 59.359 61.111 0.00 0.00 35.07 5.54
725 847 2.746277 GTGGGCGAGCGGTGAAAT 60.746 61.111 0.00 0.00 0.00 2.17
791 926 3.155167 CCGGAGCAGAGTACCCCC 61.155 72.222 0.00 0.00 0.00 5.40
792 927 2.363925 ACCGGAGCAGAGTACCCC 60.364 66.667 9.46 0.00 0.00 4.95
794 929 1.681327 TGGACCGGAGCAGAGTACC 60.681 63.158 9.46 0.00 0.00 3.34
796 931 2.044555 CGTGGACCGGAGCAGAGTA 61.045 63.158 9.46 0.00 0.00 2.59
797 932 3.374402 CGTGGACCGGAGCAGAGT 61.374 66.667 9.46 0.00 0.00 3.24
1031 1169 0.534873 AAGCGAGAAAGAGAGAGGGC 59.465 55.000 0.00 0.00 0.00 5.19
1035 1173 3.013921 GAGGAGAAGCGAGAAAGAGAGA 58.986 50.000 0.00 0.00 0.00 3.10
1042 1180 1.276421 CTTTGGGAGGAGAAGCGAGAA 59.724 52.381 0.00 0.00 0.00 2.87
1060 1198 2.619074 CCTTTTCCCTCGGCATTCTCTT 60.619 50.000 0.00 0.00 0.00 2.85
1061 1199 1.065126 CCTTTTCCCTCGGCATTCTCT 60.065 52.381 0.00 0.00 0.00 3.10
1062 1200 1.383523 CCTTTTCCCTCGGCATTCTC 58.616 55.000 0.00 0.00 0.00 2.87
1063 1201 0.034089 CCCTTTTCCCTCGGCATTCT 60.034 55.000 0.00 0.00 0.00 2.40
1064 1202 1.667154 GCCCTTTTCCCTCGGCATTC 61.667 60.000 0.00 0.00 41.25 2.67
1260 1410 3.052869 ACAAAGAAGAAGAAACCCCAGGT 60.053 43.478 0.00 0.00 37.65 4.00
1261 1411 3.319122 CACAAAGAAGAAGAAACCCCAGG 59.681 47.826 0.00 0.00 0.00 4.45
1262 1412 3.954258 ACACAAAGAAGAAGAAACCCCAG 59.046 43.478 0.00 0.00 0.00 4.45
1323 1473 1.098050 CGGGCAAGGGATCAAAGAAG 58.902 55.000 0.00 0.00 0.00 2.85
1375 1525 1.014564 CCCGTTCTCTTCCTTCACGC 61.015 60.000 0.00 0.00 0.00 5.34
1384 1534 2.603776 ACCGGCTCCCGTTCTCTT 60.604 61.111 0.00 0.00 46.80 2.85
1385 1535 3.069318 GACCGGCTCCCGTTCTCT 61.069 66.667 0.00 0.00 46.80 3.10
1389 1539 4.143333 CATCGACCGGCTCCCGTT 62.143 66.667 0.00 0.00 46.80 4.44
1394 1544 1.226717 GTCTGTCATCGACCGGCTC 60.227 63.158 0.00 0.00 0.00 4.70
1430 1580 3.770040 CCACCGACATCGCCTCCA 61.770 66.667 0.00 0.00 38.18 3.86
1526 1676 3.805891 GAGCTCCTGGATCTGCCGC 62.806 68.421 4.50 0.00 40.66 6.53
1568 1718 2.690778 GCACGGCATGAAGGGACAC 61.691 63.158 0.00 0.00 0.00 3.67
1569 1719 2.359850 GCACGGCATGAAGGGACA 60.360 61.111 0.00 0.00 0.00 4.02
1762 1938 0.103208 GTTGGAGCGGTCGATCAGAT 59.897 55.000 8.77 0.00 31.28 2.90
1821 2006 1.216710 GAACCGCCACAGAGAGGAG 59.783 63.158 0.00 0.00 0.00 3.69
1834 2019 1.089920 CCCTCTTGCAAGATGAACCG 58.910 55.000 28.57 15.74 33.93 4.44
1875 2060 1.743996 GTTCTCCTCCATCAACTGCC 58.256 55.000 0.00 0.00 0.00 4.85
1887 2072 2.359230 GCAGCTTGCCGTTCTCCT 60.359 61.111 0.00 0.00 37.42 3.69
1937 2122 2.669569 GCCACACACTGGATGCGT 60.670 61.111 0.00 0.00 43.95 5.24
1970 2155 1.153449 CGTCAAGCATAGCCGGGAA 60.153 57.895 2.18 0.00 0.00 3.97
1978 2163 1.226575 CGGCGACTCGTCAAGCATA 60.227 57.895 0.00 0.00 0.00 3.14
2032 2220 0.037790 GGCTGAGCTCGTTCTTGAGT 60.038 55.000 9.64 0.00 38.28 3.41
2163 2351 4.351938 TGACCGTCGAGTTGGCCG 62.352 66.667 0.00 0.00 0.00 6.13
2213 2401 0.532862 GTCGTGATCGCCATTCCCAT 60.533 55.000 0.00 0.00 36.96 4.00
2231 2419 3.064324 GCCAGCTTTCGCCATGGT 61.064 61.111 14.67 0.00 34.77 3.55
2242 2430 2.581354 GACCTGTCGATGCCAGCT 59.419 61.111 0.00 0.00 0.00 4.24
2296 2484 1.446792 CTGCGCCATCTTGACGAGT 60.447 57.895 4.18 0.00 0.00 4.18
2327 2515 3.968265 AGGGTACATTTGGAATCCACAG 58.032 45.455 0.00 0.00 30.78 3.66
2394 2582 1.507174 GACGGTGAGAAGGTCCTCG 59.493 63.158 0.00 0.00 35.99 4.63
2410 2598 0.470341 GAGGCTTCACCCCTATGGAC 59.530 60.000 0.00 0.00 40.58 4.02
2411 2599 0.694444 GGAGGCTTCACCCCTATGGA 60.694 60.000 0.00 0.00 40.58 3.41
2552 2758 2.159653 GCAGGCAATGTAAGTTCAGACG 60.160 50.000 0.00 0.00 0.00 4.18
2573 2779 3.424565 CGTCTCTGCAGCAAGATTTCAAG 60.425 47.826 9.47 0.00 0.00 3.02
2637 2844 5.800296 CTCCAGTAGAGATCTCCTCGATAA 58.200 45.833 19.30 0.00 46.50 1.75
2638 2845 4.323180 GCTCCAGTAGAGATCTCCTCGATA 60.323 50.000 19.30 1.79 46.50 2.92
2700 2907 4.562789 CACACTACATACTGATCAACACGG 59.437 45.833 0.00 0.00 0.00 4.94
2723 2931 5.666969 TTAACCATAAGACGTGCATATGC 57.333 39.130 21.09 21.09 42.50 3.14
2745 2953 9.686683 AAACACTTAGTGGATGCTAGAATTAAT 57.313 29.630 17.21 0.00 37.94 1.40
2752 2960 6.344500 AGATGAAACACTTAGTGGATGCTAG 58.656 40.000 17.21 0.00 37.94 3.42
2903 3111 1.149174 CTCCATCCCCAACCCATCG 59.851 63.158 0.00 0.00 0.00 3.84
3039 3263 6.151648 ACCCAAGAACATGATATGAACAAGTG 59.848 38.462 0.00 0.00 0.00 3.16
3040 3264 6.248433 ACCCAAGAACATGATATGAACAAGT 58.752 36.000 0.00 0.00 0.00 3.16
3041 3265 6.764308 ACCCAAGAACATGATATGAACAAG 57.236 37.500 0.00 0.00 0.00 3.16
3042 3266 6.071447 CCAACCCAAGAACATGATATGAACAA 60.071 38.462 0.00 0.00 0.00 2.83
3043 3267 5.418524 CCAACCCAAGAACATGATATGAACA 59.581 40.000 0.00 0.00 0.00 3.18
3044 3268 5.679638 GCCAACCCAAGAACATGATATGAAC 60.680 44.000 0.00 0.00 0.00 3.18
3045 3269 4.402155 GCCAACCCAAGAACATGATATGAA 59.598 41.667 0.00 0.00 0.00 2.57
3046 3270 3.953612 GCCAACCCAAGAACATGATATGA 59.046 43.478 0.00 0.00 0.00 2.15
3047 3271 3.700539 TGCCAACCCAAGAACATGATATG 59.299 43.478 0.00 0.00 0.00 1.78
3048 3272 3.979911 TGCCAACCCAAGAACATGATAT 58.020 40.909 0.00 0.00 0.00 1.63
3049 3273 3.448093 TGCCAACCCAAGAACATGATA 57.552 42.857 0.00 0.00 0.00 2.15
3050 3274 2.307496 TGCCAACCCAAGAACATGAT 57.693 45.000 0.00 0.00 0.00 2.45
3051 3275 2.079170 TTGCCAACCCAAGAACATGA 57.921 45.000 0.00 0.00 0.00 3.07
3052 3276 3.068560 CAATTGCCAACCCAAGAACATG 58.931 45.455 0.00 0.00 0.00 3.21
3053 3277 2.971330 TCAATTGCCAACCCAAGAACAT 59.029 40.909 0.00 0.00 0.00 2.71
3054 3278 2.102252 GTCAATTGCCAACCCAAGAACA 59.898 45.455 0.00 0.00 0.00 3.18
3089 3313 0.823356 GAAGCAGGTGAGTTTGGGCA 60.823 55.000 0.00 0.00 0.00 5.36
3100 3325 0.637195 TAGCCTCCTAGGAAGCAGGT 59.363 55.000 29.79 17.97 37.67 4.00
3109 3334 2.160721 TTCTGGTGGTAGCCTCCTAG 57.839 55.000 7.64 4.38 37.97 3.02
3110 3335 2.023404 TGATTCTGGTGGTAGCCTCCTA 60.023 50.000 7.64 0.00 37.97 2.94
3111 3336 1.273838 TGATTCTGGTGGTAGCCTCCT 60.274 52.381 7.64 0.00 37.97 3.69
3113 3338 2.633488 GTTGATTCTGGTGGTAGCCTC 58.367 52.381 0.00 0.00 0.00 4.70
3114 3339 1.282157 GGTTGATTCTGGTGGTAGCCT 59.718 52.381 0.00 0.00 0.00 4.58
3126 3382 2.415512 GTGGAACTAGCACGGTTGATTC 59.584 50.000 0.00 0.00 0.00 2.52
3148 3404 0.167908 TCGCAATAAGCAGCAAACCG 59.832 50.000 0.00 0.00 46.13 4.44
3174 3458 2.886523 CCATGAAGAGCTGGAACAAACA 59.113 45.455 0.00 0.00 38.70 2.83
3186 3470 6.479331 CAGTGATCACTCAATACCATGAAGAG 59.521 42.308 25.58 4.93 40.20 2.85
3190 3474 5.422145 CACAGTGATCACTCAATACCATGA 58.578 41.667 25.58 0.00 40.20 3.07
3195 3529 4.248859 ACTGCACAGTGATCACTCAATAC 58.751 43.478 25.58 13.41 40.20 1.89
3202 3536 6.137794 AGTACTATACTGCACAGTGATCAC 57.862 41.667 18.47 18.47 42.52 3.06
3210 3544 5.475564 TGACTTGTGAGTACTATACTGCACA 59.524 40.000 8.34 8.34 41.03 4.57
3215 3549 8.060075 ACCCTATTGACTTGTGAGTACTATACT 58.940 37.037 0.00 0.00 42.86 2.12
3224 3558 3.452627 AGCCTACCCTATTGACTTGTGAG 59.547 47.826 0.00 0.00 0.00 3.51
3231 3565 8.198778 GCTAAATCTATAGCCTACCCTATTGAC 58.801 40.741 0.00 0.00 41.98 3.18
3232 3566 7.899172 TGCTAAATCTATAGCCTACCCTATTGA 59.101 37.037 4.06 0.00 46.19 2.57
3236 3571 7.246763 AGTTGCTAAATCTATAGCCTACCCTA 58.753 38.462 4.06 0.00 46.19 3.53
3257 3602 8.489025 CAGTGATGGACTTGCAACCATAGTTG 62.489 46.154 18.73 13.49 45.41 3.16
3273 3618 2.831685 ACGTAACTTGCAGTGATGGA 57.168 45.000 0.00 0.00 0.00 3.41
3277 3622 2.664568 GCGATTACGTAACTTGCAGTGA 59.335 45.455 10.81 0.00 41.98 3.41
3281 3626 3.061322 ACAAGCGATTACGTAACTTGCA 58.939 40.909 25.37 1.67 39.14 4.08
3290 3635 0.800683 TCTGCCGACAAGCGATTACG 60.801 55.000 5.44 5.44 44.57 3.18
3304 3649 2.303311 ACTTGTTTACCCTCTCTCTGCC 59.697 50.000 0.00 0.00 0.00 4.85
3413 3758 7.078228 GGCAGTTAATATAGGATTTTCGCTTG 58.922 38.462 0.00 0.00 0.00 4.01
3430 3775 7.658525 AATTGATGATATTGTGGGCAGTTAA 57.341 32.000 0.00 0.00 0.00 2.01
3463 3808 5.805486 TGGTCAAGATCTTAAATTCTCGACG 59.195 40.000 7.86 0.00 28.64 5.12
3490 3835 4.935205 CCCATGAAGACAAACAATAGACGA 59.065 41.667 0.00 0.00 0.00 4.20
3491 3836 4.935205 TCCCATGAAGACAAACAATAGACG 59.065 41.667 0.00 0.00 0.00 4.18
3513 3858 8.148999 TCCTCTTTGAAAGACTAAAAGTACCTC 58.851 37.037 3.02 0.00 33.56 3.85
3624 3989 1.094785 ATGCACGGCCTTTGTGATAC 58.905 50.000 12.86 0.00 39.73 2.24
3703 4094 6.046593 TCAACAAACTATGAGTCGTTGAAGT 58.953 36.000 16.28 0.00 39.63 3.01
3742 4133 2.746279 TGACACATTTCCCCACACTT 57.254 45.000 0.00 0.00 0.00 3.16
3935 4410 7.014905 TGTCAGGTACACAGTGTAAGTATTCTT 59.985 37.037 15.24 0.00 34.21 2.52
3936 4411 6.492429 TGTCAGGTACACAGTGTAAGTATTCT 59.508 38.462 15.24 4.09 34.21 2.40
3937 4412 6.684686 TGTCAGGTACACAGTGTAAGTATTC 58.315 40.000 15.24 1.82 34.21 1.75
3968 4480 1.268625 TCAAGCTCTGCAGTGCAATTG 59.731 47.619 34.74 29.53 38.41 2.32
4082 4594 0.392863 TGGTGCACGGAGGATTCATG 60.393 55.000 11.45 0.00 0.00 3.07
4176 4688 1.138069 TGAGAACGTCCAAGCAGTCAA 59.862 47.619 0.00 0.00 0.00 3.18
4234 4746 2.549633 GCCACATAGATGTTGCACAC 57.450 50.000 12.48 0.00 45.57 3.82
4422 4934 2.409870 CCAATGCTCCCCGTGAAGC 61.410 63.158 0.00 0.00 0.00 3.86
4424 4936 2.354729 CCCAATGCTCCCCGTGAA 59.645 61.111 0.00 0.00 0.00 3.18
4465 4977 1.065854 CCAGGTTCATCCACACTCCTC 60.066 57.143 0.00 0.00 39.02 3.71
4522 5034 2.504367 GGTGTTACAAGCATCCACACT 58.496 47.619 0.00 0.00 38.25 3.55
4584 5096 4.272489 CTTGCTTAGGATGTCCCATTCAA 58.728 43.478 0.00 0.00 37.41 2.69
4764 5276 3.058914 CACTGAAAAGCCTTCCAACTACG 60.059 47.826 0.00 0.00 0.00 3.51
4770 5282 3.795688 AGATCACTGAAAAGCCTTCCA 57.204 42.857 0.00 0.00 0.00 3.53
4773 5285 4.940654 GCTTCTAGATCACTGAAAAGCCTT 59.059 41.667 0.00 0.00 0.00 4.35
4807 5319 0.690762 TTCCCAAGACTACAGCACCC 59.309 55.000 0.00 0.00 0.00 4.61
4814 5326 4.009675 TGATGCATTGTTCCCAAGACTAC 58.990 43.478 0.00 0.00 33.17 2.73
4900 5412 6.016024 ACACATGTTACACATTCTGAGCAAAT 60.016 34.615 0.00 0.00 36.53 2.32
4905 5417 9.755804 ATATCTACACATGTTACACATTCTGAG 57.244 33.333 0.00 0.00 36.53 3.35
4912 5424 7.607250 TGACACATATCTACACATGTTACACA 58.393 34.615 0.00 0.00 33.12 3.72
4933 5445 9.991906 GGTATTAAGTATTAACTATGCCTGACA 57.008 33.333 0.00 0.00 44.35 3.58
4967 5479 1.541379 TCATTGCAATGCACAGAGCT 58.459 45.000 30.57 0.00 45.94 4.09
4979 5491 1.134007 CCCTGCCTCTACATCATTGCA 60.134 52.381 0.00 0.00 0.00 4.08
4996 5508 0.698818 AAAAAGGAGGATCACGCCCT 59.301 50.000 0.00 0.00 40.38 5.19
5018 5530 9.791820 CATTTGTCATCATGCTCAGTATTTAAA 57.208 29.630 0.00 0.00 0.00 1.52
5019 5531 9.176460 TCATTTGTCATCATGCTCAGTATTTAA 57.824 29.630 0.00 0.00 0.00 1.52
5020 5532 8.735692 TCATTTGTCATCATGCTCAGTATTTA 57.264 30.769 0.00 0.00 0.00 1.40
5040 5560 3.896888 TCCCAACTTCACATGCTTCATTT 59.103 39.130 0.00 0.00 0.00 2.32
5049 5569 8.328758 TCAAGAATATAACTCCCAACTTCACAT 58.671 33.333 0.00 0.00 0.00 3.21
5098 5619 8.270137 TGGAATATAAATAGTACCAAGGCTGA 57.730 34.615 0.00 0.00 0.00 4.26
5137 5658 3.689161 CAGCATGAATCCGAAAAGTACCA 59.311 43.478 0.00 0.00 39.69 3.25
5158 5679 5.997746 AGCTGTAGTAATTCAAGCTTTGACA 59.002 36.000 0.00 0.00 39.87 3.58
5162 5683 6.486657 TGTTCAGCTGTAGTAATTCAAGCTTT 59.513 34.615 14.67 0.00 0.00 3.51
5247 5777 8.773404 TTACCTTTTCAAGTTCTATGCTAGTC 57.227 34.615 0.00 0.00 0.00 2.59
5304 5834 7.277760 GCCCGAGAAAATAATAATTGCTGTTTT 59.722 33.333 0.00 0.00 0.00 2.43
5332 5862 5.350504 ACAAAATGACACATTTGGGTTCA 57.649 34.783 15.95 0.00 40.09 3.18
5334 5864 8.865090 TCTATTACAAAATGACACATTTGGGTT 58.135 29.630 15.95 6.25 40.09 4.11
5369 5899 4.678256 ACTTCATACCTTCAGTCTCCTGA 58.322 43.478 0.00 0.00 45.95 3.86
5372 5902 9.535878 CTAATTTACTTCATACCTTCAGTCTCC 57.464 37.037 0.00 0.00 0.00 3.71
5386 5916 8.458573 ACAAACACACATCCTAATTTACTTCA 57.541 30.769 0.00 0.00 0.00 3.02
5409 5939 9.221933 ACGTACATCTAATTTGGTTTCAATACA 57.778 29.630 0.00 0.00 32.28 2.29
5414 5944 8.723311 CCTAAACGTACATCTAATTTGGTTTCA 58.277 33.333 0.00 0.00 0.00 2.69
5434 5977 4.264543 CATGACTGCACGAATCCTAAAC 57.735 45.455 0.00 0.00 0.00 2.01
5454 5998 3.550639 GCACAACTGCAGTAATTCAAGCA 60.551 43.478 22.01 0.00 43.62 3.91
5610 6233 7.821652 TCACACAGATTTAGAACAACAACAAA 58.178 30.769 0.00 0.00 0.00 2.83
5611 6234 7.384439 TCACACAGATTTAGAACAACAACAA 57.616 32.000 0.00 0.00 0.00 2.83
5612 6235 6.993786 TCACACAGATTTAGAACAACAACA 57.006 33.333 0.00 0.00 0.00 3.33
5613 6236 7.472543 AGTTCACACAGATTTAGAACAACAAC 58.527 34.615 0.00 0.00 40.63 3.32
5614 6237 7.624360 AGTTCACACAGATTTAGAACAACAA 57.376 32.000 0.00 0.00 40.63 2.83
5615 6238 7.201696 GGAAGTTCACACAGATTTAGAACAACA 60.202 37.037 5.01 0.00 40.63 3.33
5616 6239 7.132863 GGAAGTTCACACAGATTTAGAACAAC 58.867 38.462 5.01 0.00 40.63 3.32
5688 6311 5.123344 GGTTTTCTGCCAATTACGTAGATGT 59.877 40.000 0.00 0.00 0.00 3.06
5695 6318 2.482721 ACGAGGTTTTCTGCCAATTACG 59.517 45.455 0.00 0.00 0.00 3.18
5696 6319 3.424433 CGACGAGGTTTTCTGCCAATTAC 60.424 47.826 0.00 0.00 0.00 1.89
5697 6320 2.739913 CGACGAGGTTTTCTGCCAATTA 59.260 45.455 0.00 0.00 0.00 1.40
5698 6321 1.535462 CGACGAGGTTTTCTGCCAATT 59.465 47.619 0.00 0.00 0.00 2.32
5703 6326 0.935196 AACACGACGAGGTTTTCTGC 59.065 50.000 0.00 0.00 0.00 4.26
5715 6338 4.499040 CCAGAAACAATCAAACAACACGAC 59.501 41.667 0.00 0.00 0.00 4.34
5755 6378 3.504906 AGATGGTCACACAAATCAAGCAG 59.495 43.478 0.00 0.00 0.00 4.24
5773 6396 5.885449 AGGAAGGACAGGAAGAATAGATG 57.115 43.478 0.00 0.00 0.00 2.90
5822 6453 2.123428 GGGCCTGTCCATGTGATGC 61.123 63.158 0.84 0.00 36.21 3.91
5907 6539 2.047274 CTGGGCTGTACACCACCG 60.047 66.667 14.03 0.00 32.33 4.94
5919 6551 2.273449 CTGGGATGTCCACTGGGC 59.727 66.667 0.86 0.00 41.46 5.36
5972 6604 0.250209 GGCAGGAGCATGATCGATGT 60.250 55.000 0.54 0.00 44.61 3.06
6203 6837 1.295746 GTTCCCCCGTCTCCAAGAC 59.704 63.158 0.00 0.00 41.71 3.01
6245 6883 1.296715 CTCCAAGACCCTTCACCGG 59.703 63.158 0.00 0.00 0.00 5.28
6361 7006 0.462759 GGGAGAAGGCCGAGTCAATG 60.463 60.000 0.00 0.00 0.00 2.82
6439 7086 3.548616 GGCCAAAATGCAAACAAAAGCTC 60.549 43.478 0.00 0.00 0.00 4.09
6476 7123 3.389329 ACATGGAACCTCATAGCTACCAG 59.611 47.826 0.00 0.00 0.00 4.00
6502 7149 4.459390 AGCATCACATTTTGCTATTGCA 57.541 36.364 0.00 0.00 46.92 4.08
6513 7160 5.564550 AGTTCCTACAGAAAGCATCACATT 58.435 37.500 0.00 0.00 35.85 2.71
6567 7214 2.098443 TGCCTCAAAAGAAACCGAACAC 59.902 45.455 0.00 0.00 0.00 3.32
6615 7262 2.145958 AATGATGACTGATCGCTCGG 57.854 50.000 0.00 0.00 33.17 4.63
6617 7264 6.212235 TCTTTCTAATGATGACTGATCGCTC 58.788 40.000 0.00 0.00 33.17 5.03
6659 7308 2.168521 CGGAGGGTGTACATGACAAGAT 59.831 50.000 0.00 0.00 40.66 2.40
6661 7310 1.275291 ACGGAGGGTGTACATGACAAG 59.725 52.381 0.00 0.00 40.66 3.16
6673 7329 4.466827 ACAGTTATTTTGAAACGGAGGGT 58.533 39.130 0.00 0.00 32.00 4.34
6710 7366 7.404671 AAGTGTCATGGTTTTAGTTCAAACT 57.595 32.000 0.46 0.46 42.91 2.66
6711 7367 9.744468 AATAAGTGTCATGGTTTTAGTTCAAAC 57.256 29.630 0.00 0.00 36.12 2.93
6714 7370 9.743057 CAAAATAAGTGTCATGGTTTTAGTTCA 57.257 29.630 0.00 0.00 0.00 3.18
6715 7371 9.959749 TCAAAATAAGTGTCATGGTTTTAGTTC 57.040 29.630 0.00 0.00 0.00 3.01
6720 7376 9.054922 CCATTTCAAAATAAGTGTCATGGTTTT 57.945 29.630 0.00 0.00 0.00 2.43
6721 7377 8.428063 TCCATTTCAAAATAAGTGTCATGGTTT 58.572 29.630 0.00 0.00 32.71 3.27
6722 7378 7.961351 TCCATTTCAAAATAAGTGTCATGGTT 58.039 30.769 0.00 0.00 32.71 3.67
6723 7379 7.309990 CCTCCATTTCAAAATAAGTGTCATGGT 60.310 37.037 0.00 0.00 32.71 3.55
6724 7380 7.037438 CCTCCATTTCAAAATAAGTGTCATGG 58.963 38.462 0.00 0.00 32.40 3.66
6725 7381 7.037438 CCCTCCATTTCAAAATAAGTGTCATG 58.963 38.462 0.00 0.00 0.00 3.07
6726 7382 6.953520 TCCCTCCATTTCAAAATAAGTGTCAT 59.046 34.615 0.00 0.00 0.00 3.06
6727 7383 6.310941 TCCCTCCATTTCAAAATAAGTGTCA 58.689 36.000 0.00 0.00 0.00 3.58
6728 7384 6.434340 ACTCCCTCCATTTCAAAATAAGTGTC 59.566 38.462 0.00 0.00 0.00 3.67
6734 7390 8.893563 AATGTTACTCCCTCCATTTCAAAATA 57.106 30.769 0.00 0.00 0.00 1.40
6741 7397 5.640147 TGTTGAATGTTACTCCCTCCATTT 58.360 37.500 0.00 0.00 0.00 2.32
6744 7400 4.288366 TGATGTTGAATGTTACTCCCTCCA 59.712 41.667 0.00 0.00 0.00 3.86
6746 7402 5.297776 CCATGATGTTGAATGTTACTCCCTC 59.702 44.000 0.00 0.00 0.00 4.30
6837 7576 4.110482 GTTCATGATGATGCCTTTTGAGC 58.890 43.478 0.00 0.00 0.00 4.26
6838 7577 5.105877 ACTGTTCATGATGATGCCTTTTGAG 60.106 40.000 0.00 0.00 0.00 3.02
6839 7578 4.768448 ACTGTTCATGATGATGCCTTTTGA 59.232 37.500 0.00 0.00 0.00 2.69
6840 7579 5.068234 ACTGTTCATGATGATGCCTTTTG 57.932 39.130 0.00 0.00 0.00 2.44
6841 7580 6.839124 TTACTGTTCATGATGATGCCTTTT 57.161 33.333 0.00 0.00 0.00 2.27
6842 7581 6.839124 TTTACTGTTCATGATGATGCCTTT 57.161 33.333 0.00 0.00 0.00 3.11
6843 7582 6.839124 TTTTACTGTTCATGATGATGCCTT 57.161 33.333 0.00 0.00 0.00 4.35
6844 7583 6.839124 TTTTTACTGTTCATGATGATGCCT 57.161 33.333 0.00 0.00 0.00 4.75
6865 7604 8.134895 TGTTGCGAAAAGTCTTGAGATATTTTT 58.865 29.630 0.00 5.18 30.86 1.94
6866 7605 7.648142 TGTTGCGAAAAGTCTTGAGATATTTT 58.352 30.769 0.00 6.61 32.30 1.82
6867 7606 7.202016 TGTTGCGAAAAGTCTTGAGATATTT 57.798 32.000 0.00 0.00 0.00 1.40
6868 7607 6.801539 TGTTGCGAAAAGTCTTGAGATATT 57.198 33.333 0.00 0.00 0.00 1.28
6869 7608 6.801539 TTGTTGCGAAAAGTCTTGAGATAT 57.198 33.333 0.00 0.00 0.00 1.63
6870 7609 6.037720 TGTTTGTTGCGAAAAGTCTTGAGATA 59.962 34.615 0.00 0.00 0.00 1.98
6871 7610 5.163663 TGTTTGTTGCGAAAAGTCTTGAGAT 60.164 36.000 0.00 0.00 0.00 2.75
6872 7611 4.155099 TGTTTGTTGCGAAAAGTCTTGAGA 59.845 37.500 0.00 0.00 0.00 3.27
6873 7612 4.411327 TGTTTGTTGCGAAAAGTCTTGAG 58.589 39.130 0.00 0.00 0.00 3.02
6874 7613 4.427096 TGTTTGTTGCGAAAAGTCTTGA 57.573 36.364 0.00 0.00 0.00 3.02
6875 7614 5.701029 AATGTTTGTTGCGAAAAGTCTTG 57.299 34.783 0.00 0.00 0.00 3.02
6876 7615 6.472163 CAGTAATGTTTGTTGCGAAAAGTCTT 59.528 34.615 0.00 0.00 0.00 3.01
6877 7616 5.971202 CAGTAATGTTTGTTGCGAAAAGTCT 59.029 36.000 0.00 0.00 0.00 3.24
6878 7617 5.968848 TCAGTAATGTTTGTTGCGAAAAGTC 59.031 36.000 0.00 0.00 0.00 3.01
6879 7618 5.885881 TCAGTAATGTTTGTTGCGAAAAGT 58.114 33.333 0.00 0.00 0.00 2.66
6880 7619 6.804534 TTCAGTAATGTTTGTTGCGAAAAG 57.195 33.333 0.00 0.00 0.00 2.27
6881 7620 7.763172 AATTCAGTAATGTTTGTTGCGAAAA 57.237 28.000 0.00 0.00 0.00 2.29
6882 7621 7.763172 AAATTCAGTAATGTTTGTTGCGAAA 57.237 28.000 0.00 0.00 0.00 3.46
6883 7622 7.704472 AGAAAATTCAGTAATGTTTGTTGCGAA 59.296 29.630 0.00 0.00 0.00 4.70
6884 7623 7.167302 CAGAAAATTCAGTAATGTTTGTTGCGA 59.833 33.333 0.00 0.00 0.00 5.10
6885 7624 7.275785 CAGAAAATTCAGTAATGTTTGTTGCG 58.724 34.615 0.00 0.00 0.00 4.85
6886 7625 7.065283 GCAGAAAATTCAGTAATGTTTGTTGC 58.935 34.615 0.00 0.00 0.00 4.17
6887 7626 8.129161 TGCAGAAAATTCAGTAATGTTTGTTG 57.871 30.769 0.00 0.00 0.00 3.33
6888 7627 8.891671 ATGCAGAAAATTCAGTAATGTTTGTT 57.108 26.923 0.00 0.00 0.00 2.83
6889 7628 9.410556 GTATGCAGAAAATTCAGTAATGTTTGT 57.589 29.630 0.00 0.00 0.00 2.83
6890 7629 9.409312 TGTATGCAGAAAATTCAGTAATGTTTG 57.591 29.630 0.00 0.00 0.00 2.93
6892 7631 9.577110 CATGTATGCAGAAAATTCAGTAATGTT 57.423 29.630 0.00 0.00 0.00 2.71
6961 7700 7.481275 TTTTGGAGCATTGATTTTGTTTCTC 57.519 32.000 0.00 0.00 0.00 2.87
7028 7767 5.838521 ACATTTGTGGAGGTCTGGTAATTTT 59.161 36.000 0.00 0.00 0.00 1.82
7029 7768 5.243730 CACATTTGTGGAGGTCTGGTAATTT 59.756 40.000 2.69 0.00 42.10 1.82
7030 7769 4.766891 CACATTTGTGGAGGTCTGGTAATT 59.233 41.667 2.69 0.00 42.10 1.40
7031 7770 4.042809 TCACATTTGTGGAGGTCTGGTAAT 59.957 41.667 10.60 0.00 45.65 1.89
7074 7813 1.412079 TTGCATGGTTTTCTGCCTGT 58.588 45.000 0.00 0.00 37.59 4.00
7085 7828 3.384146 TCTCACAACAAACATTGCATGGT 59.616 39.130 0.00 0.00 32.47 3.55
7145 7890 9.866655 AATGCTCTTTCCATGGATAGTAAAATA 57.133 29.630 25.78 9.64 0.00 1.40
7160 7905 4.265073 TCCTTAGCTTGAATGCTCTTTCC 58.735 43.478 0.00 0.00 42.97 3.13
7162 7907 7.341805 TCTAATCCTTAGCTTGAATGCTCTTT 58.658 34.615 0.00 0.00 42.97 2.52
7172 7917 7.872113 AAATGGTCTTCTAATCCTTAGCTTG 57.128 36.000 0.00 0.00 33.23 4.01
7173 7918 7.340487 CCAAAATGGTCTTCTAATCCTTAGCTT 59.660 37.037 0.00 0.00 31.00 3.74
7178 7923 5.583932 AGCCAAAATGGTCTTCTAATCCTT 58.416 37.500 0.00 0.00 40.46 3.36
7194 7939 6.151985 TGAACTGAGTTTACAAAGAGCCAAAA 59.848 34.615 0.00 0.00 0.00 2.44
7198 7943 5.948992 ATGAACTGAGTTTACAAAGAGCC 57.051 39.130 0.00 0.00 0.00 4.70
7199 7944 8.089115 ACTTATGAACTGAGTTTACAAAGAGC 57.911 34.615 16.05 0.00 0.00 4.09
7201 7946 9.607988 TGAACTTATGAACTGAGTTTACAAAGA 57.392 29.630 16.05 0.00 34.09 2.52
7202 7947 9.869844 CTGAACTTATGAACTGAGTTTACAAAG 57.130 33.333 0.00 5.97 34.09 2.77
7203 7948 9.607988 TCTGAACTTATGAACTGAGTTTACAAA 57.392 29.630 0.00 0.00 34.09 2.83
7204 7949 9.042008 GTCTGAACTTATGAACTGAGTTTACAA 57.958 33.333 0.00 0.00 34.09 2.41
7205 7950 8.201464 TGTCTGAACTTATGAACTGAGTTTACA 58.799 33.333 0.00 0.00 34.09 2.41
7214 7959 5.992217 GTCCAACTGTCTGAACTTATGAACT 59.008 40.000 0.00 0.00 0.00 3.01
7252 7998 7.517321 TCATTTCCTTGCATTTTTATTTTCGC 58.483 30.769 0.00 0.00 0.00 4.70
7508 8255 9.607285 AAGTGAACTATTTATGTTTGTTTAGCG 57.393 29.630 0.00 0.00 0.00 4.26
7518 8265 7.097192 TCTTCGCTGAAGTGAACTATTTATGT 58.903 34.615 14.86 0.00 40.24 2.29
7568 8315 4.079970 TCCTGTTTATCACGACTCTGTCT 58.920 43.478 0.00 0.00 0.00 3.41
7577 8324 4.048504 TGATGCGTATCCTGTTTATCACG 58.951 43.478 11.17 0.00 32.09 4.35
7579 8326 5.017294 TGTGATGCGTATCCTGTTTATCA 57.983 39.130 11.17 0.00 32.09 2.15
7590 8338 4.994852 AGTTAACAGTGTTGTGATGCGTAT 59.005 37.500 18.90 0.00 37.67 3.06
7593 8341 3.247411 TCAGTTAACAGTGTTGTGATGCG 59.753 43.478 18.90 1.15 37.67 4.73
7598 8346 5.523552 TCTGACATCAGTTAACAGTGTTGTG 59.476 40.000 18.90 12.58 44.12 3.33
7640 8388 1.172180 TGAGGGAAACAGCCAAAGCG 61.172 55.000 0.00 0.00 46.67 4.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.