Multiple sequence alignment - TraesCS2B01G418900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G418900 chr2B 100.000 4139 0 0 1 4139 600439856 600443994 0.000000e+00 7644.0
1 TraesCS2B01G418900 chr2D 89.733 2357 138 39 1 2313 511436204 511438500 0.000000e+00 2916.0
2 TraesCS2B01G418900 chr2D 94.853 816 24 3 2367 3164 511438515 511439330 0.000000e+00 1258.0
3 TraesCS2B01G418900 chr2D 89.406 623 31 14 3161 3754 511439400 511440016 0.000000e+00 752.0
4 TraesCS2B01G418900 chr2D 91.026 156 4 3 3785 3936 511440017 511440166 7.020000e-48 202.0
5 TraesCS2B01G418900 chr2D 88.764 89 2 6 3959 4045 511440160 511440242 7.320000e-18 102.0
6 TraesCS2B01G418900 chr7A 89.095 431 34 7 1878 2300 494862368 494862793 1.320000e-144 523.0
7 TraesCS2B01G418900 chr7A 91.667 132 10 1 2348 2479 494862795 494862925 9.140000e-42 182.0
8 TraesCS2B01G418900 chrUn 94.286 280 14 1 2632 2911 10654148 10654425 1.060000e-115 427.0
9 TraesCS2B01G418900 chr6B 91.786 280 22 1 2632 2911 712336008 712336286 5.020000e-104 388.0
10 TraesCS2B01G418900 chr6B 90.909 88 6 2 4052 4139 718320677 718320592 2.610000e-22 117.0
11 TraesCS2B01G418900 chr6B 95.000 40 2 0 2420 2459 712335953 712335992 3.450000e-06 63.9
12 TraesCS2B01G418900 chr3B 89.789 284 25 2 2632 2911 20463714 20463997 1.090000e-95 361.0
13 TraesCS2B01G418900 chr3B 86.905 84 6 4 4057 4139 17789943 17790022 5.700000e-14 89.8
14 TraesCS2B01G418900 chr3B 97.500 40 1 0 2420 2459 20463659 20463698 7.420000e-08 69.4
15 TraesCS2B01G418900 chr1A 97.753 89 2 0 2632 2720 574396553 574396641 1.990000e-33 154.0
16 TraesCS2B01G418900 chr1A 96.491 57 2 0 2469 2525 574396499 574396555 1.220000e-15 95.3
17 TraesCS2B01G418900 chr1A 100.000 28 0 0 2875 2902 574396679 574396706 7.000000e-03 52.8
18 TraesCS2B01G418900 chr3A 95.506 89 4 0 2632 2720 676883598 676883686 4.310000e-30 143.0
19 TraesCS2B01G418900 chr3A 96.491 57 2 0 2469 2525 676883544 676883600 1.220000e-15 95.3
20 TraesCS2B01G418900 chr3A 100.000 28 0 0 2875 2902 676883736 676883763 7.000000e-03 52.8
21 TraesCS2B01G418900 chr2A 94.382 89 5 0 2632 2720 448541089 448541001 2.010000e-28 137.0
22 TraesCS2B01G418900 chr2A 96.296 54 2 0 2472 2525 448541140 448541087 5.700000e-14 89.8
23 TraesCS2B01G418900 chr2A 100.000 28 0 0 2875 2902 448540951 448540924 7.000000e-03 52.8
24 TraesCS2B01G418900 chr7D 90.909 88 6 2 4052 4139 205495504 205495589 2.610000e-22 117.0
25 TraesCS2B01G418900 chr1B 88.889 90 6 3 4052 4139 485069177 485069090 1.570000e-19 108.0
26 TraesCS2B01G418900 chr6A 90.244 82 7 1 4052 4133 435319809 435319729 5.660000e-19 106.0
27 TraesCS2B01G418900 chr5D 88.406 69 8 0 2908 2976 457007677 457007609 2.650000e-12 84.2
28 TraesCS2B01G418900 chr5A 86.957 69 9 0 2908 2976 574932564 574932496 1.230000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G418900 chr2B 600439856 600443994 4138 False 7644.0 7644 100.0000 1 4139 1 chr2B.!!$F1 4138
1 TraesCS2B01G418900 chr2D 511436204 511440242 4038 False 1046.0 2916 90.7564 1 4045 5 chr2D.!!$F1 4044
2 TraesCS2B01G418900 chr7A 494862368 494862925 557 False 352.5 523 90.3810 1878 2479 2 chr7A.!!$F1 601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
721 737 0.179073 AAGTTGATCCCATCTCGCCG 60.179 55.0 0.0 0.0 0.0 6.46 F
2124 2167 0.033366 GCAAACACCCGCCATTTCTT 59.967 50.0 0.0 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2342 2390 0.040781 ACAAACGCACATACCAACGC 60.041 50.0 0.00 0.00 0.00 4.84 R
3346 3488 0.104120 TCCTATTCCATCCGTGCACG 59.896 55.0 31.77 31.77 39.44 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 35 5.291971 AGAAGTGGCATGCTTTTTAGTTTG 58.708 37.500 18.92 0.00 0.00 2.93
46 48 8.032451 TGCTTTTTAGTTTGTTTTGTAGCTCTT 58.968 29.630 0.00 0.00 0.00 2.85
47 49 8.869897 GCTTTTTAGTTTGTTTTGTAGCTCTTT 58.130 29.630 0.00 0.00 0.00 2.52
92 94 5.125097 TCCTGAAGACTATGTTTCCGAGTAC 59.875 44.000 0.00 0.00 0.00 2.73
125 128 7.563724 AATATCCTACAACCATATAACCGGT 57.436 36.000 0.00 0.00 36.98 5.28
127 130 5.280654 TCCTACAACCATATAACCGGTTC 57.719 43.478 26.16 0.00 43.72 3.62
128 131 4.964262 TCCTACAACCATATAACCGGTTCT 59.036 41.667 26.16 17.51 43.72 3.01
129 132 6.135454 TCCTACAACCATATAACCGGTTCTA 58.865 40.000 26.16 19.34 43.72 2.10
130 133 6.610830 TCCTACAACCATATAACCGGTTCTAA 59.389 38.462 26.16 11.01 43.72 2.10
132 135 8.587608 CCTACAACCATATAACCGGTTCTAATA 58.412 37.037 26.16 16.69 43.72 0.98
134 137 8.842358 ACAACCATATAACCGGTTCTAATATG 57.158 34.615 27.44 27.44 43.72 1.78
136 139 7.253905 ACCATATAACCGGTTCTAATATGCT 57.746 36.000 28.29 19.38 31.90 3.79
137 140 7.328737 ACCATATAACCGGTTCTAATATGCTC 58.671 38.462 28.29 0.00 31.90 4.26
138 141 7.038587 ACCATATAACCGGTTCTAATATGCTCA 60.039 37.037 28.29 10.65 31.90 4.26
139 142 7.987458 CCATATAACCGGTTCTAATATGCTCAT 59.013 37.037 28.29 15.73 31.90 2.90
140 143 9.383519 CATATAACCGGTTCTAATATGCTCATT 57.616 33.333 26.16 0.00 0.00 2.57
141 144 7.907214 ATAACCGGTTCTAATATGCTCATTC 57.093 36.000 26.16 0.00 0.00 2.67
142 145 4.642429 ACCGGTTCTAATATGCTCATTCC 58.358 43.478 0.00 0.00 0.00 3.01
143 146 4.348168 ACCGGTTCTAATATGCTCATTCCT 59.652 41.667 0.00 0.00 0.00 3.36
144 147 4.692625 CCGGTTCTAATATGCTCATTCCTG 59.307 45.833 0.00 0.00 0.00 3.86
145 148 4.153117 CGGTTCTAATATGCTCATTCCTGC 59.847 45.833 0.00 0.00 0.00 4.85
147 150 5.532406 GGTTCTAATATGCTCATTCCTGCAA 59.468 40.000 0.00 0.00 42.74 4.08
148 151 6.433766 GTTCTAATATGCTCATTCCTGCAAC 58.566 40.000 0.00 0.00 42.74 4.17
150 153 6.121590 TCTAATATGCTCATTCCTGCAACAA 58.878 36.000 0.00 0.00 42.74 2.83
152 155 5.864418 ATATGCTCATTCCTGCAACAAAT 57.136 34.783 0.00 0.00 42.74 2.32
153 156 4.546829 ATGCTCATTCCTGCAACAAATT 57.453 36.364 0.00 0.00 42.74 1.82
154 157 3.916761 TGCTCATTCCTGCAACAAATTC 58.083 40.909 0.00 0.00 36.15 2.17
155 158 3.321396 TGCTCATTCCTGCAACAAATTCA 59.679 39.130 0.00 0.00 36.15 2.57
156 159 4.020928 TGCTCATTCCTGCAACAAATTCAT 60.021 37.500 0.00 0.00 36.15 2.57
158 161 5.716094 CTCATTCCTGCAACAAATTCATCA 58.284 37.500 0.00 0.00 0.00 3.07
159 162 5.472148 TCATTCCTGCAACAAATTCATCAC 58.528 37.500 0.00 0.00 0.00 3.06
161 164 4.933505 TCCTGCAACAAATTCATCACAA 57.066 36.364 0.00 0.00 0.00 3.33
162 165 4.873817 TCCTGCAACAAATTCATCACAAG 58.126 39.130 0.00 0.00 0.00 3.16
163 166 3.430895 CCTGCAACAAATTCATCACAAGC 59.569 43.478 0.00 0.00 0.00 4.01
164 167 4.052608 CTGCAACAAATTCATCACAAGCA 58.947 39.130 0.00 0.00 0.00 3.91
165 168 4.439968 TGCAACAAATTCATCACAAGCAA 58.560 34.783 0.00 0.00 0.00 3.91
176 179 1.135141 TCACAAGCAAAACCACACAGC 60.135 47.619 0.00 0.00 0.00 4.40
187 190 1.230635 CCACACAGCTAGCACACCAC 61.231 60.000 18.83 0.00 0.00 4.16
198 201 1.644786 GCACACCACTAACCATCGGC 61.645 60.000 0.00 0.00 0.00 5.54
201 204 3.261951 CCACTAACCATCGGCGCG 61.262 66.667 0.00 0.00 0.00 6.86
203 206 2.098233 CACTAACCATCGGCGCGTT 61.098 57.895 8.43 7.05 0.00 4.84
211 214 3.027170 ATCGGCGCGTTGCTCAAAG 62.027 57.895 8.43 0.00 45.43 2.77
220 223 1.398960 CGTTGCTCAAAGTGCACTAGC 60.399 52.381 26.32 26.32 40.40 3.42
234 237 2.102252 GCACTAGCAGCAACCTCTAGAT 59.898 50.000 0.00 0.00 41.58 1.98
235 238 3.715495 CACTAGCAGCAACCTCTAGATG 58.285 50.000 0.00 0.00 35.15 2.90
239 242 2.430332 AGCAGCAACCTCTAGATGAGAC 59.570 50.000 1.64 0.00 45.39 3.36
240 243 2.167281 GCAGCAACCTCTAGATGAGACA 59.833 50.000 1.64 0.00 45.39 3.41
253 256 7.978925 TCTAGATGAGACAGAGACCATGTATA 58.021 38.462 0.00 0.00 0.00 1.47
272 275 2.512692 ATACATGGCCAACTTGAGCA 57.487 45.000 10.96 0.00 0.00 4.26
280 283 0.895559 CCAACTTGAGCACCCCTTCC 60.896 60.000 0.00 0.00 0.00 3.46
285 288 4.452733 GAGCACCCCTTCCGGACG 62.453 72.222 1.83 0.66 0.00 4.79
321 324 2.103042 CCGCCGGAGAGCAAGAAAG 61.103 63.158 5.05 0.00 0.00 2.62
328 331 2.548920 CGGAGAGCAAGAAAGAAGGTGT 60.549 50.000 0.00 0.00 0.00 4.16
331 334 4.130118 GAGAGCAAGAAAGAAGGTGTGAA 58.870 43.478 0.00 0.00 0.00 3.18
332 335 4.723309 AGAGCAAGAAAGAAGGTGTGAAT 58.277 39.130 0.00 0.00 0.00 2.57
336 352 4.670221 GCAAGAAAGAAGGTGTGAATAGCG 60.670 45.833 0.00 0.00 0.00 4.26
350 366 3.382227 TGAATAGCGATCCTTTACGTCCA 59.618 43.478 0.00 0.00 0.00 4.02
370 386 4.129380 CCATGAGACCAATTTATGAGCGA 58.871 43.478 0.00 0.00 0.00 4.93
408 424 9.627123 TTTTAGGGGATAATAGTTCAACTCATG 57.373 33.333 0.00 0.00 0.00 3.07
411 427 5.456763 GGGGATAATAGTTCAACTCATGCCT 60.457 44.000 13.59 0.00 0.00 4.75
429 445 8.635765 TCATGCCTTTTGAAACTTATTAGTCT 57.364 30.769 0.00 0.00 31.99 3.24
472 488 7.739295 TGCGAGAAGTTCAAAACATATTAGTC 58.261 34.615 5.50 0.00 0.00 2.59
487 503 8.902540 ACATATTAGTCAAAGAGTTGTTCACA 57.097 30.769 0.00 0.00 36.07 3.58
488 504 9.507329 ACATATTAGTCAAAGAGTTGTTCACAT 57.493 29.630 0.00 0.00 36.07 3.21
506 522 5.423886 TCACATTTATGTACTCCGCAATCA 58.576 37.500 0.00 0.00 39.39 2.57
531 547 9.055248 CAGAGTTTTCAAATAACAAATAGCTCG 57.945 33.333 0.00 0.00 0.00 5.03
548 564 3.748568 AGCTCGAAAAGGATGTCAAGAAC 59.251 43.478 0.00 0.00 0.00 3.01
623 639 8.685838 AACACACACATGGTTTAGTTATTACT 57.314 30.769 0.00 0.00 38.44 2.24
624 640 9.781633 AACACACACATGGTTTAGTTATTACTA 57.218 29.630 0.00 0.00 35.78 1.82
625 641 9.211485 ACACACACATGGTTTAGTTATTACTAC 57.789 33.333 0.00 0.00 36.61 2.73
626 642 9.431887 CACACACATGGTTTAGTTATTACTACT 57.568 33.333 0.00 0.00 36.61 2.57
650 666 2.301346 ACAACCACTTGAGCAAGGAAG 58.699 47.619 14.14 5.31 42.53 3.46
676 692 3.434319 CAGCCGGCGCTCAAACAT 61.434 61.111 23.20 0.00 43.95 2.71
691 707 2.264005 AACATCCACCACTTTACGCA 57.736 45.000 0.00 0.00 0.00 5.24
718 734 2.484417 CCCTCAAGTTGATCCCATCTCG 60.484 54.545 5.91 0.00 0.00 4.04
721 737 0.179073 AAGTTGATCCCATCTCGCCG 60.179 55.000 0.00 0.00 0.00 6.46
723 739 0.876342 GTTGATCCCATCTCGCCGTC 60.876 60.000 0.00 0.00 0.00 4.79
724 740 2.028125 TTGATCCCATCTCGCCGTCC 62.028 60.000 0.00 0.00 0.00 4.79
725 741 3.227792 GATCCCATCTCGCCGTCCC 62.228 68.421 0.00 0.00 0.00 4.46
749 789 3.560453 CCCCGAATAAGAACCAACCTTCA 60.560 47.826 0.00 0.00 0.00 3.02
783 823 2.271800 CACCCGTTCTGCTTCATCTAC 58.728 52.381 0.00 0.00 0.00 2.59
784 824 2.093973 CACCCGTTCTGCTTCATCTACT 60.094 50.000 0.00 0.00 0.00 2.57
785 825 3.130516 CACCCGTTCTGCTTCATCTACTA 59.869 47.826 0.00 0.00 0.00 1.82
786 826 3.381908 ACCCGTTCTGCTTCATCTACTAG 59.618 47.826 0.00 0.00 0.00 2.57
787 827 3.381908 CCCGTTCTGCTTCATCTACTAGT 59.618 47.826 0.00 0.00 0.00 2.57
788 828 4.579340 CCCGTTCTGCTTCATCTACTAGTA 59.421 45.833 1.89 1.89 0.00 1.82
831 871 2.461897 GTCTTCGCCTAGACTCTTCG 57.538 55.000 5.79 0.00 41.07 3.79
833 873 2.008329 TCTTCGCCTAGACTCTTCGTC 58.992 52.381 0.00 0.00 43.17 4.20
843 883 1.137825 CTCTTCGTCTCCGTCCTGC 59.862 63.158 0.00 0.00 35.01 4.85
848 888 2.932234 CGTCTCCGTCCTGCACCTT 61.932 63.158 0.00 0.00 0.00 3.50
916 956 3.339141 GTTTCATCTCCCGCTCTTTCTT 58.661 45.455 0.00 0.00 0.00 2.52
919 959 1.484240 CATCTCCCGCTCTTTCTTCCT 59.516 52.381 0.00 0.00 0.00 3.36
988 1028 4.228567 GGCGGAGGAGCAGTAGCC 62.229 72.222 0.00 0.00 43.56 3.93
991 1031 2.442272 GGAGGAGCAGTAGCCGGA 60.442 66.667 5.05 0.00 43.56 5.14
1438 1478 4.392138 CGTCCTTTCGGCTCTAATTCTTTT 59.608 41.667 0.00 0.00 0.00 2.27
1506 1546 4.471157 TTACGGGTGTAAAGCGAAAAAG 57.529 40.909 0.00 0.00 37.62 2.27
1508 1548 1.664874 CGGGTGTAAAGCGAAAAAGGC 60.665 52.381 0.00 0.00 0.00 4.35
1509 1549 1.611977 GGGTGTAAAGCGAAAAAGGCT 59.388 47.619 0.00 0.00 44.02 4.58
1527 1568 6.902224 AAGGCTTCACATTTTTGTTACAAC 57.098 33.333 0.00 0.00 0.00 3.32
1544 1585 6.018669 TGTTACAACATTTTCGGATTTTTGCC 60.019 34.615 0.00 0.00 33.17 4.52
1570 1612 1.241315 AAGAAATTCCCGTGCCCGTG 61.241 55.000 0.00 0.00 0.00 4.94
1705 1747 1.373748 TCGCCGCTTTAACTTCGCT 60.374 52.632 0.00 0.00 0.00 4.93
1707 1749 0.928229 CGCCGCTTTAACTTCGCTAT 59.072 50.000 0.00 0.00 0.00 2.97
1725 1767 4.684485 CGCTATCCCCTTCTCAAGAACAAT 60.684 45.833 0.00 0.00 0.00 2.71
1732 1774 3.415212 CTTCTCAAGAACAATGGAGCCA 58.585 45.455 0.00 0.00 0.00 4.75
1773 1816 4.452455 GCACAATGCTACTCTGTTACTGTT 59.548 41.667 0.00 0.00 40.96 3.16
1796 1839 1.374758 GAAGCTGCTGGTAGTGCGT 60.375 57.895 1.35 0.00 0.00 5.24
1847 1890 1.562672 AACCTCCGGCCTACAATGCT 61.563 55.000 0.00 0.00 0.00 3.79
1888 1931 0.040646 TGGACGGGACCACTACTGAT 59.959 55.000 0.00 0.00 34.77 2.90
1889 1932 1.192428 GGACGGGACCACTACTGATT 58.808 55.000 0.00 0.00 0.00 2.57
1890 1933 2.291735 TGGACGGGACCACTACTGATTA 60.292 50.000 0.00 0.00 34.77 1.75
1891 1934 2.762327 GGACGGGACCACTACTGATTAA 59.238 50.000 0.00 0.00 0.00 1.40
1892 1935 3.196254 GGACGGGACCACTACTGATTAAA 59.804 47.826 0.00 0.00 0.00 1.52
1893 1936 4.179298 GACGGGACCACTACTGATTAAAC 58.821 47.826 0.00 0.00 0.00 2.01
1894 1937 3.055602 ACGGGACCACTACTGATTAAACC 60.056 47.826 0.00 0.00 0.00 3.27
1895 1938 3.197116 CGGGACCACTACTGATTAAACCT 59.803 47.826 0.00 0.00 0.00 3.50
1896 1939 4.679905 CGGGACCACTACTGATTAAACCTC 60.680 50.000 0.00 0.00 0.00 3.85
1897 1940 4.470304 GGGACCACTACTGATTAAACCTCT 59.530 45.833 0.00 0.00 0.00 3.69
1898 1941 5.395435 GGGACCACTACTGATTAAACCTCTC 60.395 48.000 0.00 0.00 0.00 3.20
1899 1942 5.395435 GGACCACTACTGATTAAACCTCTCC 60.395 48.000 0.00 0.00 0.00 3.71
1900 1943 5.091552 ACCACTACTGATTAAACCTCTCCA 58.908 41.667 0.00 0.00 0.00 3.86
1918 1961 0.722469 CATGCTTGTCGTTGCGTGTC 60.722 55.000 0.00 0.00 40.24 3.67
2124 2167 0.033366 GCAAACACCCGCCATTTCTT 59.967 50.000 0.00 0.00 0.00 2.52
2134 2177 0.319405 GCCATTTCTTGCCAAGTGCT 59.681 50.000 4.04 0.00 42.00 4.40
2140 2188 1.006571 CTTGCCAAGTGCTTGCCAG 60.007 57.895 6.42 1.18 42.00 4.85
2148 2196 3.256631 CCAAGTGCTTGCCAGTTAATCTT 59.743 43.478 6.42 0.00 39.16 2.40
2167 2215 2.096406 CATGTCTTCGGCGCGTTG 59.904 61.111 8.43 0.00 0.00 4.10
2169 2217 1.959226 ATGTCTTCGGCGCGTTGTT 60.959 52.632 8.43 0.00 0.00 2.83
2170 2218 1.897398 ATGTCTTCGGCGCGTTGTTC 61.897 55.000 8.43 0.00 0.00 3.18
2172 2220 1.593209 TCTTCGGCGCGTTGTTCTT 60.593 52.632 8.43 0.00 0.00 2.52
2173 2221 0.318869 TCTTCGGCGCGTTGTTCTTA 60.319 50.000 8.43 0.00 0.00 2.10
2174 2222 0.719465 CTTCGGCGCGTTGTTCTTAT 59.281 50.000 8.43 0.00 0.00 1.73
2175 2223 0.440758 TTCGGCGCGTTGTTCTTATG 59.559 50.000 8.43 0.00 0.00 1.90
2176 2224 1.060308 CGGCGCGTTGTTCTTATGG 59.940 57.895 8.43 0.00 0.00 2.74
2177 2225 1.427819 GGCGCGTTGTTCTTATGGG 59.572 57.895 8.43 0.00 0.00 4.00
2178 2226 1.303091 GGCGCGTTGTTCTTATGGGT 61.303 55.000 8.43 0.00 0.00 4.51
2182 2230 2.977169 CGCGTTGTTCTTATGGGTTTTG 59.023 45.455 0.00 0.00 0.00 2.44
2308 2356 4.576463 TCCTTGCTCTTTCTGTTTCAGTTC 59.424 41.667 0.00 0.00 32.61 3.01
2313 2361 3.708890 TCTTTCTGTTTCAGTTCGCGTA 58.291 40.909 5.77 0.00 32.61 4.42
2314 2362 3.488310 TCTTTCTGTTTCAGTTCGCGTAC 59.512 43.478 7.91 7.91 32.61 3.67
2315 2363 2.787601 TCTGTTTCAGTTCGCGTACT 57.212 45.000 13.02 13.02 32.61 2.73
2317 2365 3.047796 TCTGTTTCAGTTCGCGTACTTC 58.952 45.455 16.23 7.71 32.61 3.01
2318 2366 3.050619 CTGTTTCAGTTCGCGTACTTCT 58.949 45.455 16.23 0.84 0.00 2.85
2319 2367 3.047796 TGTTTCAGTTCGCGTACTTCTC 58.952 45.455 16.23 7.70 0.00 2.87
2320 2368 2.342910 TTCAGTTCGCGTACTTCTCC 57.657 50.000 16.23 0.00 0.00 3.71
2321 2369 0.167470 TCAGTTCGCGTACTTCTCCG 59.833 55.000 16.23 4.79 0.00 4.63
2323 2371 2.157073 GTTCGCGTACTTCTCCGGC 61.157 63.158 5.77 0.00 0.00 6.13
2325 2373 4.471726 CGCGTACTTCTCCGGCGT 62.472 66.667 6.01 0.00 41.75 5.68
2326 2374 2.793946 GCGTACTTCTCCGGCGTA 59.206 61.111 6.01 0.00 0.00 4.42
2327 2375 1.358046 GCGTACTTCTCCGGCGTAT 59.642 57.895 6.01 0.00 0.00 3.06
2328 2376 0.933509 GCGTACTTCTCCGGCGTATG 60.934 60.000 6.01 2.39 0.00 2.39
2329 2377 0.379669 CGTACTTCTCCGGCGTATGT 59.620 55.000 6.01 2.23 0.00 2.29
2330 2378 1.836383 GTACTTCTCCGGCGTATGTG 58.164 55.000 6.01 0.00 0.00 3.21
2331 2379 1.133790 GTACTTCTCCGGCGTATGTGT 59.866 52.381 6.01 1.67 0.00 3.72
2332 2380 0.108804 ACTTCTCCGGCGTATGTGTG 60.109 55.000 6.01 0.00 0.00 3.82
2333 2381 0.108804 CTTCTCCGGCGTATGTGTGT 60.109 55.000 6.01 0.00 0.00 3.72
2334 2382 0.319083 TTCTCCGGCGTATGTGTGTT 59.681 50.000 6.01 0.00 0.00 3.32
2335 2383 0.319083 TCTCCGGCGTATGTGTGTTT 59.681 50.000 6.01 0.00 0.00 2.83
2336 2384 0.442310 CTCCGGCGTATGTGTGTTTG 59.558 55.000 6.01 0.00 0.00 2.93
2337 2385 0.249953 TCCGGCGTATGTGTGTTTGT 60.250 50.000 6.01 0.00 0.00 2.83
2338 2386 0.165079 CCGGCGTATGTGTGTTTGTC 59.835 55.000 6.01 0.00 0.00 3.18
2339 2387 1.144969 CGGCGTATGTGTGTTTGTCT 58.855 50.000 0.00 0.00 0.00 3.41
2340 2388 2.330286 CGGCGTATGTGTGTTTGTCTA 58.670 47.619 0.00 0.00 0.00 2.59
2341 2389 2.927477 CGGCGTATGTGTGTTTGTCTAT 59.073 45.455 0.00 0.00 0.00 1.98
2342 2390 3.241963 CGGCGTATGTGTGTTTGTCTATG 60.242 47.826 0.00 0.00 0.00 2.23
2343 2391 3.485216 GGCGTATGTGTGTTTGTCTATGC 60.485 47.826 0.00 0.00 0.00 3.14
2344 2392 3.780957 GCGTATGTGTGTTTGTCTATGCG 60.781 47.826 0.00 0.00 0.00 4.73
2345 2393 3.366724 CGTATGTGTGTTTGTCTATGCGT 59.633 43.478 0.00 0.00 0.00 5.24
2346 2394 4.143200 CGTATGTGTGTTTGTCTATGCGTT 60.143 41.667 0.00 0.00 0.00 4.84
2349 2397 2.289547 GTGTGTTTGTCTATGCGTTGGT 59.710 45.455 0.00 0.00 0.00 3.67
2363 2411 1.003331 CGTTGGTATGTGCGTTTGTGT 60.003 47.619 0.00 0.00 0.00 3.72
2365 2413 3.120477 CGTTGGTATGTGCGTTTGTGTAT 60.120 43.478 0.00 0.00 0.00 2.29
2619 2670 2.335011 CACCAGTCGTCGTGCTCA 59.665 61.111 0.00 0.00 0.00 4.26
2628 2679 1.069090 GTCGTGCTCAACCAGGACA 59.931 57.895 9.35 0.00 43.67 4.02
2631 2682 0.320683 CGTGCTCAACCAGGACATCA 60.321 55.000 0.00 0.00 43.67 3.07
2775 2826 2.821366 CACATGCCGGCAGACCTC 60.821 66.667 35.36 0.00 0.00 3.85
3078 3144 3.357079 CTGCACGCCAGGTTCACC 61.357 66.667 0.00 0.00 37.93 4.02
3140 3206 2.160417 GCATGCCTGTCAAGTACTGAAC 59.840 50.000 6.36 0.00 35.22 3.18
3146 3212 1.071699 TGTCAAGTACTGAACCCTGCC 59.928 52.381 0.00 0.00 35.22 4.85
3156 3222 4.722700 ACCCTGCCGCCATGTGAC 62.723 66.667 0.00 0.00 0.00 3.67
3181 3320 4.947388 AGTGTTAGGTTTGAGCTTTTGTGA 59.053 37.500 0.00 0.00 0.00 3.58
3226 3367 6.357367 ACTTTCCTGTTATTGACTGTGACTT 58.643 36.000 0.00 0.00 0.00 3.01
3242 3383 6.114221 TGTGACTTGTTAAGTGTAAGTTGC 57.886 37.500 0.00 0.00 43.03 4.17
3243 3384 5.878116 TGTGACTTGTTAAGTGTAAGTTGCT 59.122 36.000 0.00 0.00 43.03 3.91
3244 3385 7.042950 TGTGACTTGTTAAGTGTAAGTTGCTA 58.957 34.615 0.00 0.00 43.03 3.49
3245 3386 7.010738 TGTGACTTGTTAAGTGTAAGTTGCTAC 59.989 37.037 0.00 0.00 43.03 3.58
3246 3387 7.224167 GTGACTTGTTAAGTGTAAGTTGCTACT 59.776 37.037 0.00 0.00 43.03 2.57
3247 3388 7.223971 TGACTTGTTAAGTGTAAGTTGCTACTG 59.776 37.037 0.36 0.00 43.03 2.74
3324 3465 4.923871 GTGTGAACTGTGTCAAGATCGTAT 59.076 41.667 0.00 0.00 0.00 3.06
3329 3470 3.056536 ACTGTGTCAAGATCGTATGCACT 60.057 43.478 16.28 0.00 0.00 4.40
3346 3488 7.433719 CGTATGCACTATAGGCAATCTTCTATC 59.566 40.741 16.56 3.08 45.60 2.08
3347 3489 5.714047 TGCACTATAGGCAATCTTCTATCG 58.286 41.667 11.94 0.00 38.54 2.92
3361 3503 1.686587 TCTATCGTGCACGGATGGAAT 59.313 47.619 36.41 23.78 40.29 3.01
3402 3544 2.046988 CAGCATGTCACGGGCTCA 60.047 61.111 0.00 0.00 35.27 4.26
3423 3565 3.341270 TGGCAACAGGGACCTTGT 58.659 55.556 2.81 2.81 46.17 3.16
3424 3566 1.618030 TGGCAACAGGGACCTTGTT 59.382 52.632 15.87 15.87 46.17 2.83
3434 3576 6.144845 ACAGGGACCTTGTTAGTACTAGTA 57.855 41.667 2.81 0.00 0.00 1.82
3435 3577 5.948758 ACAGGGACCTTGTTAGTACTAGTAC 59.051 44.000 23.03 23.03 36.35 2.73
3436 3578 5.065731 CAGGGACCTTGTTAGTACTAGTACG 59.934 48.000 23.87 12.43 40.80 3.67
3437 3579 4.336713 GGGACCTTGTTAGTACTAGTACGG 59.663 50.000 23.87 19.80 40.80 4.02
3438 3580 4.336713 GGACCTTGTTAGTACTAGTACGGG 59.663 50.000 23.87 20.15 40.80 5.28
3461 3606 1.556911 ACTGTGACATTAGCCAGAGGG 59.443 52.381 0.00 0.00 37.18 4.30
3557 3704 1.222766 CTGCATCCGATGAGCTGCTC 61.223 60.000 22.38 22.38 35.66 4.26
3580 3734 5.701750 TCGCTGCTACCTGTGTTAATTAAAA 59.298 36.000 0.00 0.00 0.00 1.52
3584 3738 6.674066 TGCTACCTGTGTTAATTAAAACAGC 58.326 36.000 31.08 24.11 45.75 4.40
3602 3756 1.437986 CTAGCTGTCCCGTAGCCAC 59.562 63.158 0.00 0.00 42.07 5.01
3611 3765 0.674534 CCCGTAGCCACTGGATCTAC 59.325 60.000 0.00 1.25 30.89 2.59
3613 3767 1.964223 CCGTAGCCACTGGATCTACAT 59.036 52.381 0.00 0.00 34.02 2.29
3614 3768 2.288457 CCGTAGCCACTGGATCTACATG 60.288 54.545 0.00 0.00 34.02 3.21
3615 3769 2.760374 GTAGCCACTGGATCTACATGC 58.240 52.381 0.00 0.00 34.41 4.06
3616 3770 1.206878 AGCCACTGGATCTACATGCA 58.793 50.000 0.00 0.00 0.00 3.96
3620 3774 1.529865 CACTGGATCTACATGCATGCG 59.470 52.381 26.53 17.32 28.54 4.73
3622 3776 2.365293 ACTGGATCTACATGCATGCGTA 59.635 45.455 26.53 11.42 28.54 4.42
3625 3788 1.728971 GATCTACATGCATGCGTAGGC 59.271 52.381 26.53 16.22 36.55 3.93
3632 3795 1.153842 GCATGCGTAGGCCAAAACC 60.154 57.895 5.01 0.00 38.85 3.27
3647 3815 2.101640 AAACCCAGTTCCATTTGGCT 57.898 45.000 0.00 0.00 32.98 4.75
3651 3819 0.322456 CCAGTTCCATTTGGCTCCGA 60.322 55.000 0.00 0.00 34.44 4.55
3670 3838 4.067896 CCGACTAACTACCGCCTTCTATA 58.932 47.826 0.00 0.00 0.00 1.31
3680 3848 5.019785 ACCGCCTTCTATAGTAAACAAGG 57.980 43.478 11.22 11.22 37.31 3.61
3694 3862 1.237285 ACAAGGCAGCATTCCGTGAC 61.237 55.000 10.64 0.00 31.89 3.67
3699 3867 1.811266 CAGCATTCCGTGACCCTCG 60.811 63.158 0.00 0.00 0.00 4.63
3701 3869 2.100631 GCATTCCGTGACCCTCGTG 61.101 63.158 0.00 0.00 0.00 4.35
3744 3912 0.779997 AAATCTGCACCCCTGGAAGT 59.220 50.000 0.00 0.00 0.00 3.01
3775 3943 6.597614 ACGAGAGTAAACTGTAAACTAGTCG 58.402 40.000 16.72 16.72 46.88 4.18
3776 3944 6.020372 CGAGAGTAAACTGTAAACTAGTCGG 58.980 44.000 0.00 0.00 31.22 4.79
3777 3945 5.707931 AGAGTAAACTGTAAACTAGTCGGC 58.292 41.667 0.00 0.00 0.00 5.54
3778 3946 4.814147 AGTAAACTGTAAACTAGTCGGCC 58.186 43.478 0.00 0.00 0.00 6.13
3779 3947 4.525874 AGTAAACTGTAAACTAGTCGGCCT 59.474 41.667 0.00 0.00 0.00 5.19
3780 3948 5.711976 AGTAAACTGTAAACTAGTCGGCCTA 59.288 40.000 0.00 0.00 0.00 3.93
3781 3949 5.473066 AAACTGTAAACTAGTCGGCCTAA 57.527 39.130 0.00 0.00 0.00 2.69
3782 3950 5.672421 AACTGTAAACTAGTCGGCCTAAT 57.328 39.130 0.00 0.00 0.00 1.73
3783 3951 5.259832 ACTGTAAACTAGTCGGCCTAATC 57.740 43.478 0.00 0.00 0.00 1.75
3793 3961 1.067582 GGCCTAATCCGTCCTCACG 59.932 63.158 0.00 0.00 46.29 4.35
3837 4005 0.320771 AATGACAGCGCCGAAACTCT 60.321 50.000 2.29 0.00 0.00 3.24
3882 4054 3.120979 TACGGCACAGCGATCTCCG 62.121 63.158 3.62 3.62 45.04 4.63
3895 4067 0.541863 ATCTCCGAGCGGAATGGTTT 59.458 50.000 13.15 0.00 44.66 3.27
3896 4068 0.108329 TCTCCGAGCGGAATGGTTTC 60.108 55.000 13.15 0.00 44.66 2.78
3897 4069 1.078708 TCCGAGCGGAATGGTTTCC 60.079 57.895 9.50 0.00 46.85 3.13
3936 4108 1.376037 GTTTCGGGAGGTGAGCAGG 60.376 63.158 0.00 0.00 0.00 4.85
3937 4109 2.592993 TTTCGGGAGGTGAGCAGGG 61.593 63.158 0.00 0.00 0.00 4.45
3938 4110 3.539593 TTCGGGAGGTGAGCAGGGA 62.540 63.158 0.00 0.00 0.00 4.20
3940 4112 2.039624 GGGAGGTGAGCAGGGAGA 59.960 66.667 0.00 0.00 0.00 3.71
3941 4113 2.063378 GGGAGGTGAGCAGGGAGAG 61.063 68.421 0.00 0.00 0.00 3.20
3942 4114 2.730524 GGAGGTGAGCAGGGAGAGC 61.731 68.421 0.00 0.00 0.00 4.09
3943 4115 1.685421 GAGGTGAGCAGGGAGAGCT 60.685 63.158 0.00 0.00 46.82 4.09
3944 4116 1.229464 AGGTGAGCAGGGAGAGCTT 60.229 57.895 0.00 0.00 43.58 3.74
3945 4117 0.839853 AGGTGAGCAGGGAGAGCTTT 60.840 55.000 0.00 0.00 43.58 3.51
3946 4118 0.676151 GGTGAGCAGGGAGAGCTTTG 60.676 60.000 0.00 0.00 43.58 2.77
3947 4119 1.002868 TGAGCAGGGAGAGCTTTGC 60.003 57.895 0.00 0.00 43.58 3.68
3948 4120 1.748500 GAGCAGGGAGAGCTTTGCC 60.749 63.158 6.70 6.70 43.58 4.52
3949 4121 3.130160 GCAGGGAGAGCTTTGCCG 61.130 66.667 9.24 5.80 33.14 5.69
3950 4122 3.130160 CAGGGAGAGCTTTGCCGC 61.130 66.667 9.24 0.00 33.14 6.53
3951 4123 4.767255 AGGGAGAGCTTTGCCGCG 62.767 66.667 9.24 0.00 33.14 6.46
3953 4125 3.793144 GGAGAGCTTTGCCGCGTG 61.793 66.667 4.92 0.00 34.40 5.34
3954 4126 3.044305 GAGAGCTTTGCCGCGTGT 61.044 61.111 4.92 0.00 34.40 4.49
3955 4127 2.591715 AGAGCTTTGCCGCGTGTT 60.592 55.556 4.92 0.00 34.40 3.32
3956 4128 2.427410 GAGCTTTGCCGCGTGTTG 60.427 61.111 4.92 0.00 34.40 3.33
3957 4129 3.181169 GAGCTTTGCCGCGTGTTGT 62.181 57.895 4.92 0.00 34.40 3.32
3958 4130 2.278531 GCTTTGCCGCGTGTTGTT 60.279 55.556 4.92 0.00 0.00 2.83
3959 4131 2.576002 GCTTTGCCGCGTGTTGTTG 61.576 57.895 4.92 0.00 0.00 3.33
3960 4132 1.063327 CTTTGCCGCGTGTTGTTGA 59.937 52.632 4.92 0.00 0.00 3.18
3961 4133 0.929824 CTTTGCCGCGTGTTGTTGAG 60.930 55.000 4.92 0.00 0.00 3.02
3962 4134 1.369839 TTTGCCGCGTGTTGTTGAGA 61.370 50.000 4.92 0.00 0.00 3.27
3963 4135 1.771073 TTGCCGCGTGTTGTTGAGAG 61.771 55.000 4.92 0.00 0.00 3.20
3964 4136 2.244651 GCCGCGTGTTGTTGAGAGT 61.245 57.895 4.92 0.00 0.00 3.24
3965 4137 1.853319 CCGCGTGTTGTTGAGAGTC 59.147 57.895 4.92 0.00 0.00 3.36
3966 4138 0.874175 CCGCGTGTTGTTGAGAGTCA 60.874 55.000 4.92 0.00 0.00 3.41
3967 4139 0.504384 CGCGTGTTGTTGAGAGTCAG 59.496 55.000 0.00 0.00 0.00 3.51
3968 4140 0.861837 GCGTGTTGTTGAGAGTCAGG 59.138 55.000 0.00 0.00 0.00 3.86
3969 4141 1.502231 CGTGTTGTTGAGAGTCAGGG 58.498 55.000 0.00 0.00 0.00 4.45
4008 4180 2.980233 GGCAACGCCTCTGTGCTT 60.980 61.111 0.00 0.00 46.69 3.91
4009 4181 2.555547 GGCAACGCCTCTGTGCTTT 61.556 57.895 0.00 0.00 46.69 3.51
4010 4182 1.370900 GCAACGCCTCTGTGCTTTG 60.371 57.895 0.00 0.00 41.78 2.77
4011 4183 1.370900 CAACGCCTCTGTGCTTTGC 60.371 57.895 0.00 0.00 34.38 3.68
4012 4184 1.526917 AACGCCTCTGTGCTTTGCT 60.527 52.632 0.00 0.00 0.00 3.91
4015 4187 0.950555 CGCCTCTGTGCTTTGCTGTA 60.951 55.000 0.00 0.00 0.00 2.74
4027 4199 3.476552 CTTTGCTGTACTGACCTTTCCA 58.523 45.455 3.61 0.00 0.00 3.53
4037 4209 3.117512 ACTGACCTTTCCAAGACCATTGT 60.118 43.478 0.00 0.00 0.00 2.71
4045 4217 5.710513 TTCCAAGACCATTGTCATTTGAG 57.289 39.130 0.00 0.00 44.33 3.02
4046 4218 4.984295 TCCAAGACCATTGTCATTTGAGA 58.016 39.130 0.00 0.00 44.33 3.27
4047 4219 4.761739 TCCAAGACCATTGTCATTTGAGAC 59.238 41.667 0.00 0.00 44.33 3.36
4048 4220 4.763793 CCAAGACCATTGTCATTTGAGACT 59.236 41.667 0.00 0.00 44.33 3.24
4049 4221 5.242393 CCAAGACCATTGTCATTTGAGACTT 59.758 40.000 0.00 0.00 44.33 3.01
4050 4222 5.954296 AGACCATTGTCATTTGAGACTTG 57.046 39.130 0.00 0.00 44.33 3.16
4051 4223 4.763793 AGACCATTGTCATTTGAGACTTGG 59.236 41.667 0.00 12.10 44.33 3.61
4052 4224 4.473444 ACCATTGTCATTTGAGACTTGGT 58.527 39.130 13.01 13.01 43.96 3.67
4053 4225 4.520492 ACCATTGTCATTTGAGACTTGGTC 59.480 41.667 13.01 0.00 44.72 4.02
4054 4226 4.520111 CCATTGTCATTTGAGACTTGGTCA 59.480 41.667 0.00 0.00 39.27 4.02
4055 4227 5.455392 CATTGTCATTTGAGACTTGGTCAC 58.545 41.667 0.52 0.00 39.27 3.67
4056 4228 4.149511 TGTCATTTGAGACTTGGTCACA 57.850 40.909 0.52 0.00 39.27 3.58
4057 4229 4.522114 TGTCATTTGAGACTTGGTCACAA 58.478 39.130 6.48 6.48 40.24 3.33
4058 4230 4.335315 TGTCATTTGAGACTTGGTCACAAC 59.665 41.667 9.33 1.92 41.26 3.32
4059 4231 4.576463 GTCATTTGAGACTTGGTCACAACT 59.424 41.667 9.33 3.37 41.26 3.16
4060 4232 4.816385 TCATTTGAGACTTGGTCACAACTC 59.184 41.667 9.33 0.00 41.26 3.01
4061 4233 3.904800 TTGAGACTTGGTCACAACTCA 57.095 42.857 6.48 0.00 37.98 3.41
4062 4234 3.459232 TGAGACTTGGTCACAACTCAG 57.541 47.619 0.00 0.00 35.82 3.35
4063 4235 2.139118 GAGACTTGGTCACAACTCAGC 58.861 52.381 0.52 0.00 34.60 4.26
4064 4236 1.486310 AGACTTGGTCACAACTCAGCA 59.514 47.619 0.52 0.00 34.60 4.41
4065 4237 2.092968 AGACTTGGTCACAACTCAGCAA 60.093 45.455 0.52 0.00 34.60 3.91
4066 4238 2.682856 GACTTGGTCACAACTCAGCAAA 59.317 45.455 0.00 0.00 32.09 3.68
4067 4239 3.290710 ACTTGGTCACAACTCAGCAAAT 58.709 40.909 0.00 0.00 32.14 2.32
4068 4240 3.701040 ACTTGGTCACAACTCAGCAAATT 59.299 39.130 0.00 0.00 32.14 1.82
4069 4241 4.160252 ACTTGGTCACAACTCAGCAAATTT 59.840 37.500 0.00 0.00 32.14 1.82
4070 4242 4.044336 TGGTCACAACTCAGCAAATTTG 57.956 40.909 14.03 14.03 0.00 2.32
4071 4243 6.969342 CTTGGTCACAACTCAGCAAATTTGC 61.969 44.000 31.36 31.36 42.23 3.68
4095 4267 9.276590 TGCTTATATGTCAATGAGTTAATGAGG 57.723 33.333 0.00 0.00 0.00 3.86
4096 4268 9.494271 GCTTATATGTCAATGAGTTAATGAGGA 57.506 33.333 0.00 0.00 0.00 3.71
4100 4272 6.857437 TGTCAATGAGTTAATGAGGAGAGA 57.143 37.500 0.00 0.00 0.00 3.10
4101 4273 6.871844 TGTCAATGAGTTAATGAGGAGAGAG 58.128 40.000 0.00 0.00 0.00 3.20
4102 4274 6.665248 TGTCAATGAGTTAATGAGGAGAGAGA 59.335 38.462 0.00 0.00 0.00 3.10
4103 4275 7.344093 TGTCAATGAGTTAATGAGGAGAGAGAT 59.656 37.037 0.00 0.00 0.00 2.75
4104 4276 8.855110 GTCAATGAGTTAATGAGGAGAGAGATA 58.145 37.037 0.00 0.00 0.00 1.98
4105 4277 9.426534 TCAATGAGTTAATGAGGAGAGAGATAA 57.573 33.333 0.00 0.00 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 5.770162 ACTAAAAAGCATGCCACTTCTAGTT 59.230 36.000 15.66 0.00 28.64 2.24
11 12 5.049828 ACAAACTAAAAAGCATGCCACTTC 58.950 37.500 15.66 0.00 0.00 3.01
47 49 9.434275 TCAGGAGGAATGAACATATTAGAACTA 57.566 33.333 0.00 0.00 0.00 2.24
60 62 6.627087 AACATAGTCTTCAGGAGGAATGAA 57.373 37.500 1.54 0.00 34.32 2.57
69 71 4.457834 ACTCGGAAACATAGTCTTCAGG 57.542 45.455 0.00 0.00 0.00 3.86
104 107 5.899631 AACCGGTTATATGGTTGTAGGAT 57.100 39.130 20.78 0.00 46.41 3.24
112 115 7.038587 TGAGCATATTAGAACCGGTTATATGGT 60.039 37.037 33.13 33.13 40.55 3.55
115 118 9.601217 GAATGAGCATATTAGAACCGGTTATAT 57.399 33.333 22.33 16.75 0.00 0.86
124 127 6.038603 TGTTGCAGGAATGAGCATATTAGAAC 59.961 38.462 0.00 0.00 40.94 3.01
125 128 6.121590 TGTTGCAGGAATGAGCATATTAGAA 58.878 36.000 0.00 0.00 40.94 2.10
127 130 6.381481 TTGTTGCAGGAATGAGCATATTAG 57.619 37.500 0.00 0.00 40.94 1.73
128 131 6.772360 TTTGTTGCAGGAATGAGCATATTA 57.228 33.333 0.00 0.00 40.94 0.98
129 132 5.664294 TTTGTTGCAGGAATGAGCATATT 57.336 34.783 0.00 0.00 40.94 1.28
130 133 5.864418 ATTTGTTGCAGGAATGAGCATAT 57.136 34.783 0.00 0.00 40.94 1.78
132 135 4.020928 TGAATTTGTTGCAGGAATGAGCAT 60.021 37.500 0.00 0.00 40.94 3.79
133 136 3.321396 TGAATTTGTTGCAGGAATGAGCA 59.679 39.130 0.00 0.00 39.32 4.26
134 137 3.916761 TGAATTTGTTGCAGGAATGAGC 58.083 40.909 0.00 0.00 0.00 4.26
136 139 5.010820 TGTGATGAATTTGTTGCAGGAATGA 59.989 36.000 0.00 0.00 0.00 2.57
137 140 5.231702 TGTGATGAATTTGTTGCAGGAATG 58.768 37.500 0.00 0.00 0.00 2.67
138 141 5.471556 TGTGATGAATTTGTTGCAGGAAT 57.528 34.783 0.00 0.00 0.00 3.01
139 142 4.933505 TGTGATGAATTTGTTGCAGGAA 57.066 36.364 0.00 0.00 0.00 3.36
140 143 4.796946 GCTTGTGATGAATTTGTTGCAGGA 60.797 41.667 0.00 0.00 0.00 3.86
141 144 3.430895 GCTTGTGATGAATTTGTTGCAGG 59.569 43.478 0.00 0.00 0.00 4.85
142 145 4.052608 TGCTTGTGATGAATTTGTTGCAG 58.947 39.130 0.00 0.00 0.00 4.41
143 146 4.056092 TGCTTGTGATGAATTTGTTGCA 57.944 36.364 0.00 0.00 0.00 4.08
144 147 5.406767 TTTGCTTGTGATGAATTTGTTGC 57.593 34.783 0.00 0.00 0.00 4.17
145 148 6.183360 TGGTTTTGCTTGTGATGAATTTGTTG 60.183 34.615 0.00 0.00 0.00 3.33
147 150 5.294060 GTGGTTTTGCTTGTGATGAATTTGT 59.706 36.000 0.00 0.00 0.00 2.83
148 151 5.293814 TGTGGTTTTGCTTGTGATGAATTTG 59.706 36.000 0.00 0.00 0.00 2.32
150 153 4.810491 GTGTGGTTTTGCTTGTGATGAATT 59.190 37.500 0.00 0.00 0.00 2.17
152 155 3.194329 TGTGTGGTTTTGCTTGTGATGAA 59.806 39.130 0.00 0.00 0.00 2.57
153 156 2.757314 TGTGTGGTTTTGCTTGTGATGA 59.243 40.909 0.00 0.00 0.00 2.92
154 157 3.117794 CTGTGTGGTTTTGCTTGTGATG 58.882 45.455 0.00 0.00 0.00 3.07
155 158 2.481795 GCTGTGTGGTTTTGCTTGTGAT 60.482 45.455 0.00 0.00 0.00 3.06
156 159 1.135141 GCTGTGTGGTTTTGCTTGTGA 60.135 47.619 0.00 0.00 0.00 3.58
158 161 1.185315 AGCTGTGTGGTTTTGCTTGT 58.815 45.000 0.00 0.00 0.00 3.16
159 162 2.859806 GCTAGCTGTGTGGTTTTGCTTG 60.860 50.000 7.70 0.00 35.47 4.01
161 164 0.954452 GCTAGCTGTGTGGTTTTGCT 59.046 50.000 7.70 0.00 37.72 3.91
162 165 0.667993 TGCTAGCTGTGTGGTTTTGC 59.332 50.000 17.23 0.00 0.00 3.68
163 166 1.675483 TGTGCTAGCTGTGTGGTTTTG 59.325 47.619 17.23 0.00 0.00 2.44
164 167 1.676006 GTGTGCTAGCTGTGTGGTTTT 59.324 47.619 17.23 0.00 0.00 2.43
165 168 1.308998 GTGTGCTAGCTGTGTGGTTT 58.691 50.000 17.23 0.00 0.00 3.27
176 179 2.540515 CGATGGTTAGTGGTGTGCTAG 58.459 52.381 0.00 0.00 0.00 3.42
187 190 2.701006 CAACGCGCCGATGGTTAG 59.299 61.111 5.73 0.00 0.00 2.34
198 201 2.005537 GTGCACTTTGAGCAACGCG 61.006 57.895 10.32 3.53 44.64 6.01
201 204 1.603802 TGCTAGTGCACTTTGAGCAAC 59.396 47.619 31.07 9.01 45.31 4.17
203 206 1.516161 CTGCTAGTGCACTTTGAGCA 58.484 50.000 30.95 30.95 45.31 4.26
211 214 0.321122 AGAGGTTGCTGCTAGTGCAC 60.321 55.000 9.40 9.40 45.31 4.57
220 223 3.698539 TCTGTCTCATCTAGAGGTTGCTG 59.301 47.826 4.02 0.00 44.81 4.41
223 226 4.338118 GGTCTCTGTCTCATCTAGAGGTTG 59.662 50.000 4.02 0.00 44.81 3.77
230 233 9.674068 GTATATACATGGTCTCTGTCTCATCTA 57.326 37.037 8.05 0.00 0.00 1.98
253 256 2.094675 GTGCTCAAGTTGGCCATGTAT 58.905 47.619 6.09 0.00 0.00 2.29
289 292 4.849329 GCGGTGTCGTCGCCTAGG 62.849 72.222 3.67 3.67 46.55 3.02
300 303 4.379243 CTTGCTCTCCGGCGGTGT 62.379 66.667 27.32 0.00 34.52 4.16
314 317 4.690748 TCGCTATTCACACCTTCTTTCTTG 59.309 41.667 0.00 0.00 0.00 3.02
321 324 3.460857 AGGATCGCTATTCACACCTTC 57.539 47.619 0.00 0.00 0.00 3.46
328 331 3.382227 TGGACGTAAAGGATCGCTATTCA 59.618 43.478 0.00 0.00 0.00 2.57
331 334 3.572682 TCATGGACGTAAAGGATCGCTAT 59.427 43.478 0.00 0.00 0.00 2.97
332 335 2.953648 TCATGGACGTAAAGGATCGCTA 59.046 45.455 0.00 0.00 0.00 4.26
336 352 3.132289 TGGTCTCATGGACGTAAAGGATC 59.868 47.826 0.00 0.00 45.35 3.36
350 366 8.627208 AAATATCGCTCATAAATTGGTCTCAT 57.373 30.769 0.00 0.00 0.00 2.90
392 408 7.994425 TCAAAAGGCATGAGTTGAACTATTA 57.006 32.000 0.00 0.00 0.00 0.98
402 418 8.409358 ACTAATAAGTTTCAAAAGGCATGAGT 57.591 30.769 0.00 0.00 29.00 3.41
403 419 8.734386 AGACTAATAAGTTTCAAAAGGCATGAG 58.266 33.333 0.00 0.00 35.56 2.90
438 454 8.926710 TGTTTTGAACTTCTCGCAAAAATAAAA 58.073 25.926 0.00 0.00 41.46 1.52
472 488 9.599322 GAGTACATAAATGTGAACAACTCTTTG 57.401 33.333 12.54 0.00 41.89 2.77
479 495 4.998033 TGCGGAGTACATAAATGTGAACAA 59.002 37.500 5.85 0.00 41.89 2.83
484 500 5.523552 TCTGATTGCGGAGTACATAAATGTG 59.476 40.000 5.85 0.00 41.89 3.21
485 501 5.670485 TCTGATTGCGGAGTACATAAATGT 58.330 37.500 0.63 0.63 44.48 2.71
486 502 6.220579 CTCTGATTGCGGAGTACATAAATG 57.779 41.667 0.00 0.00 41.66 2.32
506 522 8.999431 TCGAGCTATTTGTTATTTGAAAACTCT 58.001 29.630 0.00 0.00 0.00 3.24
548 564 3.529634 TTGCTGTTTCGGTTTATGTCG 57.470 42.857 0.00 0.00 0.00 4.35
599 615 9.211485 GTAGTAATAACTAAACCATGTGTGTGT 57.789 33.333 0.00 0.00 39.90 3.72
600 616 9.431887 AGTAGTAATAACTAAACCATGTGTGTG 57.568 33.333 0.00 0.00 39.90 3.82
623 639 5.279306 CCTTGCTCAAGTGGTTGTACTAGTA 60.279 44.000 0.00 0.00 36.72 1.82
624 640 4.503296 CCTTGCTCAAGTGGTTGTACTAGT 60.503 45.833 0.00 0.00 36.72 2.57
625 641 3.997021 CCTTGCTCAAGTGGTTGTACTAG 59.003 47.826 8.60 0.00 36.72 2.57
626 642 3.644265 TCCTTGCTCAAGTGGTTGTACTA 59.356 43.478 8.60 0.00 36.72 1.82
627 643 2.438021 TCCTTGCTCAAGTGGTTGTACT 59.562 45.455 8.60 0.00 36.72 2.73
628 644 2.846193 TCCTTGCTCAAGTGGTTGTAC 58.154 47.619 8.60 0.00 36.72 2.90
629 645 3.476552 CTTCCTTGCTCAAGTGGTTGTA 58.523 45.455 8.60 0.00 36.72 2.41
630 646 2.301346 CTTCCTTGCTCAAGTGGTTGT 58.699 47.619 8.60 0.00 36.72 3.32
631 647 1.000938 GCTTCCTTGCTCAAGTGGTTG 60.001 52.381 8.60 0.00 36.72 3.77
632 648 1.322442 GCTTCCTTGCTCAAGTGGTT 58.678 50.000 8.60 0.00 36.72 3.67
633 649 0.183492 TGCTTCCTTGCTCAAGTGGT 59.817 50.000 8.60 0.00 36.72 4.16
634 650 0.879765 CTGCTTCCTTGCTCAAGTGG 59.120 55.000 8.60 0.00 36.72 4.00
676 692 1.624312 TGGTATGCGTAAAGTGGTGGA 59.376 47.619 0.00 0.00 0.00 4.02
691 707 2.509964 GGGATCAACTTGAGGGTGGTAT 59.490 50.000 0.00 0.00 32.53 2.73
718 734 2.935627 CTTATTCGGGGTGGGACGGC 62.936 65.000 0.00 0.00 0.00 5.68
721 737 1.407851 GGTTCTTATTCGGGGTGGGAC 60.408 57.143 0.00 0.00 0.00 4.46
723 739 0.621609 TGGTTCTTATTCGGGGTGGG 59.378 55.000 0.00 0.00 0.00 4.61
724 740 2.089201 GTTGGTTCTTATTCGGGGTGG 58.911 52.381 0.00 0.00 0.00 4.61
725 741 2.089201 GGTTGGTTCTTATTCGGGGTG 58.911 52.381 0.00 0.00 0.00 4.61
783 823 4.083565 GGGGGAGCTCTGTCTTATACTAG 58.916 52.174 14.64 0.00 0.00 2.57
784 824 3.465966 TGGGGGAGCTCTGTCTTATACTA 59.534 47.826 14.64 0.00 0.00 1.82
785 825 2.247635 TGGGGGAGCTCTGTCTTATACT 59.752 50.000 14.64 0.00 0.00 2.12
786 826 2.365941 GTGGGGGAGCTCTGTCTTATAC 59.634 54.545 14.64 0.00 0.00 1.47
787 827 2.023404 TGTGGGGGAGCTCTGTCTTATA 60.023 50.000 14.64 0.00 0.00 0.98
788 828 1.273838 TGTGGGGGAGCTCTGTCTTAT 60.274 52.381 14.64 0.00 0.00 1.73
831 871 0.250338 AAAAGGTGCAGGACGGAGAC 60.250 55.000 0.00 0.00 0.00 3.36
833 873 0.875059 GAAAAAGGTGCAGGACGGAG 59.125 55.000 0.00 0.00 0.00 4.63
843 883 3.551659 GCTTGCCAGAGAAGAAAAAGGTG 60.552 47.826 0.00 0.00 0.00 4.00
848 888 2.233271 CAGGCTTGCCAGAGAAGAAAA 58.767 47.619 14.54 0.00 0.00 2.29
881 921 3.183776 GAAACCCAAAACGGCGCGA 62.184 57.895 12.10 0.00 0.00 5.87
883 923 1.006688 ATGAAACCCAAAACGGCGC 60.007 52.632 6.90 0.00 0.00 6.53
895 935 2.979240 AGAAAGAGCGGGAGATGAAAC 58.021 47.619 0.00 0.00 0.00 2.78
916 956 4.465446 CCGGAGCAGGGAGGAGGA 62.465 72.222 0.00 0.00 0.00 3.71
991 1031 4.455137 CCACCCCATCCCCTCCCT 62.455 72.222 0.00 0.00 0.00 4.20
1438 1478 5.319043 AGTGGATTTTGGAGTGTAAAGGA 57.681 39.130 0.00 0.00 0.00 3.36
1506 1546 6.843069 ATGTTGTAACAAAAATGTGAAGCC 57.157 33.333 1.10 0.00 43.03 4.35
1508 1548 9.407514 CGAAAATGTTGTAACAAAAATGTGAAG 57.592 29.630 1.10 0.00 43.03 3.02
1509 1549 8.383619 CCGAAAATGTTGTAACAAAAATGTGAA 58.616 29.630 1.10 0.00 43.03 3.18
1570 1612 0.742990 TAGCTTGCATACACGGCCAC 60.743 55.000 2.24 0.00 0.00 5.01
1705 1747 4.788075 TCCATTGTTCTTGAGAAGGGGATA 59.212 41.667 0.00 0.00 34.27 2.59
1707 1749 2.986019 TCCATTGTTCTTGAGAAGGGGA 59.014 45.455 0.00 0.00 34.27 4.81
1759 1802 5.304614 AGCTTCCAAGAACAGTAACAGAGTA 59.695 40.000 0.00 0.00 0.00 2.59
1773 1816 1.002430 CACTACCAGCAGCTTCCAAGA 59.998 52.381 0.00 0.00 0.00 3.02
1796 1839 2.696707 CCACCTCCGCCATTACTACTAA 59.303 50.000 0.00 0.00 0.00 2.24
1847 1890 3.289836 CAACATAACCATGGGCATCTCA 58.710 45.455 18.09 0.00 36.39 3.27
1883 1926 4.851639 AGCATGGAGAGGTTTAATCAGT 57.148 40.909 0.00 0.00 0.00 3.41
1888 1931 3.244422 ACGACAAGCATGGAGAGGTTTAA 60.244 43.478 0.00 0.00 0.00 1.52
1889 1932 2.301870 ACGACAAGCATGGAGAGGTTTA 59.698 45.455 0.00 0.00 0.00 2.01
1890 1933 1.072331 ACGACAAGCATGGAGAGGTTT 59.928 47.619 0.00 0.00 0.00 3.27
1891 1934 0.687354 ACGACAAGCATGGAGAGGTT 59.313 50.000 0.00 0.00 0.00 3.50
1892 1935 0.687354 AACGACAAGCATGGAGAGGT 59.313 50.000 0.00 0.00 0.00 3.85
1893 1936 1.081892 CAACGACAAGCATGGAGAGG 58.918 55.000 0.00 0.00 0.00 3.69
1894 1937 0.445436 GCAACGACAAGCATGGAGAG 59.555 55.000 0.00 0.00 0.00 3.20
1895 1938 1.291184 CGCAACGACAAGCATGGAGA 61.291 55.000 0.00 0.00 0.00 3.71
1896 1939 1.133253 CGCAACGACAAGCATGGAG 59.867 57.895 0.00 0.00 0.00 3.86
1897 1940 1.596752 ACGCAACGACAAGCATGGA 60.597 52.632 0.00 0.00 0.00 3.41
1898 1941 1.440850 CACGCAACGACAAGCATGG 60.441 57.895 0.00 0.00 0.00 3.66
1899 1942 0.722469 GACACGCAACGACAAGCATG 60.722 55.000 0.00 0.00 0.00 4.06
1900 1943 1.157257 TGACACGCAACGACAAGCAT 61.157 50.000 0.00 0.00 0.00 3.79
2089 2132 3.053896 GCAGTTACCGGGTGTGCC 61.054 66.667 10.66 0.00 0.00 5.01
2103 2146 0.667184 GAAATGGCGGGTGTTTGCAG 60.667 55.000 0.00 0.00 0.00 4.41
2134 2177 4.922206 AGACATGGAAGATTAACTGGCAA 58.078 39.130 0.00 0.00 0.00 4.52
2140 2188 3.001330 CGCCGAAGACATGGAAGATTAAC 59.999 47.826 0.00 0.00 0.00 2.01
2148 2196 3.583276 AACGCGCCGAAGACATGGA 62.583 57.895 5.73 0.00 0.00 3.41
2167 2215 2.897350 ACCCCCAAAACCCATAAGAAC 58.103 47.619 0.00 0.00 0.00 3.01
2169 2217 3.512496 GAAACCCCCAAAACCCATAAGA 58.488 45.455 0.00 0.00 0.00 2.10
2170 2218 2.569853 GGAAACCCCCAAAACCCATAAG 59.430 50.000 0.00 0.00 0.00 1.73
2172 2220 1.508185 TGGAAACCCCCAAAACCCATA 59.492 47.619 0.00 0.00 32.31 2.74
2173 2221 0.269173 TGGAAACCCCCAAAACCCAT 59.731 50.000 0.00 0.00 32.31 4.00
2174 2222 0.269173 ATGGAAACCCCCAAAACCCA 59.731 50.000 0.00 0.00 40.04 4.51
2175 2223 1.073125 CAATGGAAACCCCCAAAACCC 59.927 52.381 0.00 0.00 40.04 4.11
2176 2224 1.544537 GCAATGGAAACCCCCAAAACC 60.545 52.381 0.00 0.00 40.04 3.27
2177 2225 1.141858 TGCAATGGAAACCCCCAAAAC 59.858 47.619 0.00 0.00 40.04 2.43
2178 2226 1.419387 CTGCAATGGAAACCCCCAAAA 59.581 47.619 0.00 0.00 40.04 2.44
2182 2230 1.989508 CCCTGCAATGGAAACCCCC 60.990 63.158 0.00 0.00 0.00 5.40
2261 2309 3.055094 GGAATACCTTGAGTGAGCCTGAA 60.055 47.826 0.00 0.00 0.00 3.02
2264 2312 2.839228 AGGAATACCTTGAGTGAGCCT 58.161 47.619 0.00 0.00 45.36 4.58
2295 2343 3.088194 AGTACGCGAACTGAAACAGAA 57.912 42.857 15.93 0.00 35.18 3.02
2308 2356 2.384391 ATACGCCGGAGAAGTACGCG 62.384 60.000 13.83 3.53 36.35 6.01
2313 2361 0.108804 CACACATACGCCGGAGAAGT 60.109 55.000 13.83 4.04 0.00 3.01
2314 2362 0.108804 ACACACATACGCCGGAGAAG 60.109 55.000 13.83 3.34 0.00 2.85
2315 2363 0.319083 AACACACATACGCCGGAGAA 59.681 50.000 13.83 0.00 0.00 2.87
2317 2365 0.442310 CAAACACACATACGCCGGAG 59.558 55.000 5.05 3.72 0.00 4.63
2318 2366 0.249953 ACAAACACACATACGCCGGA 60.250 50.000 5.05 0.00 0.00 5.14
2319 2367 0.165079 GACAAACACACATACGCCGG 59.835 55.000 0.00 0.00 0.00 6.13
2320 2368 1.144969 AGACAAACACACATACGCCG 58.855 50.000 0.00 0.00 0.00 6.46
2321 2369 3.485216 GCATAGACAAACACACATACGCC 60.485 47.826 0.00 0.00 0.00 5.68
2323 2371 3.366724 ACGCATAGACAAACACACATACG 59.633 43.478 0.00 0.00 0.00 3.06
2324 2372 4.921470 ACGCATAGACAAACACACATAC 57.079 40.909 0.00 0.00 0.00 2.39
2325 2373 4.153296 CCAACGCATAGACAAACACACATA 59.847 41.667 0.00 0.00 0.00 2.29
2326 2374 3.058293 CCAACGCATAGACAAACACACAT 60.058 43.478 0.00 0.00 0.00 3.21
2327 2375 2.289274 CCAACGCATAGACAAACACACA 59.711 45.455 0.00 0.00 0.00 3.72
2328 2376 2.289547 ACCAACGCATAGACAAACACAC 59.710 45.455 0.00 0.00 0.00 3.82
2329 2377 2.566913 ACCAACGCATAGACAAACACA 58.433 42.857 0.00 0.00 0.00 3.72
2330 2378 4.153475 ACATACCAACGCATAGACAAACAC 59.847 41.667 0.00 0.00 0.00 3.32
2331 2379 4.153296 CACATACCAACGCATAGACAAACA 59.847 41.667 0.00 0.00 0.00 2.83
2332 2380 4.647964 CACATACCAACGCATAGACAAAC 58.352 43.478 0.00 0.00 0.00 2.93
2333 2381 3.126171 GCACATACCAACGCATAGACAAA 59.874 43.478 0.00 0.00 0.00 2.83
2334 2382 2.675844 GCACATACCAACGCATAGACAA 59.324 45.455 0.00 0.00 0.00 3.18
2335 2383 2.276201 GCACATACCAACGCATAGACA 58.724 47.619 0.00 0.00 0.00 3.41
2336 2384 1.257936 CGCACATACCAACGCATAGAC 59.742 52.381 0.00 0.00 0.00 2.59
2337 2385 1.134936 ACGCACATACCAACGCATAGA 60.135 47.619 0.00 0.00 0.00 1.98
2338 2386 1.286501 ACGCACATACCAACGCATAG 58.713 50.000 0.00 0.00 0.00 2.23
2339 2387 1.728068 AACGCACATACCAACGCATA 58.272 45.000 0.00 0.00 0.00 3.14
2340 2388 0.878416 AAACGCACATACCAACGCAT 59.122 45.000 0.00 0.00 0.00 4.73
2341 2389 0.040870 CAAACGCACATACCAACGCA 60.041 50.000 0.00 0.00 0.00 5.24
2342 2390 0.040781 ACAAACGCACATACCAACGC 60.041 50.000 0.00 0.00 0.00 4.84
2343 2391 1.003331 ACACAAACGCACATACCAACG 60.003 47.619 0.00 0.00 0.00 4.10
2344 2392 2.766970 ACACAAACGCACATACCAAC 57.233 45.000 0.00 0.00 0.00 3.77
2345 2393 5.440234 AAATACACAAACGCACATACCAA 57.560 34.783 0.00 0.00 0.00 3.67
2346 2394 5.440234 AAAATACACAAACGCACATACCA 57.560 34.783 0.00 0.00 0.00 3.25
2349 2397 7.115520 CCATTGAAAAATACACAAACGCACATA 59.884 33.333 0.00 0.00 0.00 2.29
2363 2411 3.057174 GTCACCACGGCCATTGAAAAATA 60.057 43.478 2.24 0.00 0.00 1.40
2365 2413 1.067821 GTCACCACGGCCATTGAAAAA 59.932 47.619 2.24 0.00 0.00 1.94
2571 2619 1.672356 GCTGCTTCGCCTCTTGGAA 60.672 57.895 0.00 0.00 34.57 3.53
2619 2670 1.649321 TCTGCTCTGATGTCCTGGTT 58.351 50.000 0.00 0.00 0.00 3.67
2628 2679 1.220206 CCGGCTGTTCTGCTCTGAT 59.780 57.895 0.00 0.00 0.00 2.90
2631 2682 2.977178 CTCCGGCTGTTCTGCTCT 59.023 61.111 0.00 0.00 0.00 4.09
2759 2810 4.457496 CGAGGTCTGCCGGCATGT 62.457 66.667 32.87 14.95 40.50 3.21
3078 3144 0.180406 AGCCAGGGTACGCCTTATTG 59.820 55.000 6.27 0.00 34.45 1.90
3146 3212 1.078709 CTAACACTGGTCACATGGCG 58.921 55.000 0.00 0.00 0.00 5.69
3156 3222 4.097892 ACAAAAGCTCAAACCTAACACTGG 59.902 41.667 0.00 0.00 0.00 4.00
3181 3320 6.466885 AGTACTTTCTGACGGTAATAGCAT 57.533 37.500 0.00 0.00 0.00 3.79
3214 3355 7.101054 ACTTACACTTAACAAGTCACAGTCAA 58.899 34.615 0.00 0.00 40.46 3.18
3219 3360 5.878116 AGCAACTTACACTTAACAAGTCACA 59.122 36.000 0.00 0.00 40.46 3.58
3226 3367 7.650504 CAGTACAGTAGCAACTTACACTTAACA 59.349 37.037 0.00 0.00 31.97 2.41
3242 3383 1.403780 GCGGGAACACCAGTACAGTAG 60.404 57.143 0.00 0.00 40.22 2.57
3243 3384 0.604578 GCGGGAACACCAGTACAGTA 59.395 55.000 0.00 0.00 40.22 2.74
3244 3385 1.370064 GCGGGAACACCAGTACAGT 59.630 57.895 0.00 0.00 40.22 3.55
3245 3386 0.250124 TTGCGGGAACACCAGTACAG 60.250 55.000 0.00 0.00 40.22 2.74
3246 3387 0.180642 TTTGCGGGAACACCAGTACA 59.819 50.000 0.00 0.00 40.22 2.90
3247 3388 1.310904 TTTTGCGGGAACACCAGTAC 58.689 50.000 0.00 0.00 40.22 2.73
3324 3465 5.243954 ACGATAGAAGATTGCCTATAGTGCA 59.756 40.000 10.69 10.69 41.38 4.57
3329 3470 5.470368 GTGCACGATAGAAGATTGCCTATA 58.530 41.667 0.00 0.00 41.38 1.31
3346 3488 0.104120 TCCTATTCCATCCGTGCACG 59.896 55.000 31.77 31.77 39.44 5.34
3347 3489 2.550830 ATCCTATTCCATCCGTGCAC 57.449 50.000 6.82 6.82 0.00 4.57
3361 3503 1.827789 GCCATGCGCCCAAATCCTA 60.828 57.895 4.18 0.00 0.00 2.94
3400 3542 3.164977 TCCCTGTTGCCACCGTGA 61.165 61.111 0.00 0.00 0.00 4.35
3402 3544 4.265056 GGTCCCTGTTGCCACCGT 62.265 66.667 0.00 0.00 0.00 4.83
3423 3565 4.937620 CACAGTGACCCGTACTAGTACTAA 59.062 45.833 26.36 8.25 34.04 2.24
3424 3566 4.222810 TCACAGTGACCCGTACTAGTACTA 59.777 45.833 26.36 1.89 34.04 1.82
3434 3576 1.337823 GCTAATGTCACAGTGACCCGT 60.338 52.381 27.51 16.20 46.40 5.28
3435 3577 1.359848 GCTAATGTCACAGTGACCCG 58.640 55.000 27.51 15.19 46.40 5.28
3436 3578 1.003118 TGGCTAATGTCACAGTGACCC 59.997 52.381 27.51 21.04 46.40 4.46
3437 3579 2.028112 TCTGGCTAATGTCACAGTGACC 60.028 50.000 27.51 13.82 46.40 4.02
3557 3704 5.539582 TTTAATTAACACAGGTAGCAGCG 57.460 39.130 0.00 0.00 0.00 5.18
3584 3738 1.038130 AGTGGCTACGGGACAGCTAG 61.038 60.000 0.00 0.00 39.09 3.42
3602 3756 1.875009 ACGCATGCATGTAGATCCAG 58.125 50.000 26.79 11.05 0.00 3.86
3611 3765 0.173029 TTTTGGCCTACGCATGCATG 59.827 50.000 22.70 22.70 36.38 4.06
3613 3767 1.583986 GTTTTGGCCTACGCATGCA 59.416 52.632 19.57 0.00 36.38 3.96
3614 3768 1.153842 GGTTTTGGCCTACGCATGC 60.154 57.895 7.91 7.91 36.38 4.06
3615 3769 1.247419 TGGGTTTTGGCCTACGCATG 61.247 55.000 15.37 0.00 36.38 4.06
3616 3770 0.965363 CTGGGTTTTGGCCTACGCAT 60.965 55.000 18.18 0.00 36.74 4.73
3620 3774 1.254026 GGAACTGGGTTTTGGCCTAC 58.746 55.000 3.32 0.00 0.00 3.18
3622 3776 0.190815 ATGGAACTGGGTTTTGGCCT 59.809 50.000 3.32 0.00 0.00 5.19
3625 3788 2.810032 GCCAAATGGAACTGGGTTTTGG 60.810 50.000 2.98 8.08 37.39 3.28
3632 3795 0.322456 TCGGAGCCAAATGGAACTGG 60.322 55.000 2.98 0.00 37.39 4.00
3647 3815 1.098050 GAAGGCGGTAGTTAGTCGGA 58.902 55.000 0.00 0.00 0.00 4.55
3651 3819 7.557719 TGTTTACTATAGAAGGCGGTAGTTAGT 59.442 37.037 6.78 0.00 0.00 2.24
3670 3838 1.812571 CGGAATGCTGCCTTGTTTACT 59.187 47.619 0.00 0.00 0.00 2.24
3680 3848 2.045926 AGGGTCACGGAATGCTGC 60.046 61.111 0.00 0.00 0.00 5.25
3683 3851 2.100631 CACGAGGGTCACGGAATGC 61.101 63.158 0.00 0.00 34.93 3.56
3694 3862 2.510768 GTGTCCTATTAGCACGAGGG 57.489 55.000 0.00 0.00 0.00 4.30
3699 3867 2.973694 TTCCCGTGTCCTATTAGCAC 57.026 50.000 0.00 0.00 0.00 4.40
3701 3869 3.131396 CACATTCCCGTGTCCTATTAGC 58.869 50.000 0.00 0.00 32.00 3.09
3744 3912 1.272490 CAGTTTACTCTCGTGGCTCCA 59.728 52.381 0.00 0.00 0.00 3.86
3754 3922 5.336293 GGCCGACTAGTTTACAGTTTACTCT 60.336 44.000 0.00 0.00 0.00 3.24
3755 3923 4.861462 GGCCGACTAGTTTACAGTTTACTC 59.139 45.833 0.00 0.00 0.00 2.59
3756 3924 4.525874 AGGCCGACTAGTTTACAGTTTACT 59.474 41.667 0.00 0.00 0.00 2.24
3757 3925 4.814147 AGGCCGACTAGTTTACAGTTTAC 58.186 43.478 0.00 0.00 0.00 2.01
3758 3926 6.588719 TTAGGCCGACTAGTTTACAGTTTA 57.411 37.500 0.00 0.00 32.16 2.01
3759 3927 5.473066 TTAGGCCGACTAGTTTACAGTTT 57.527 39.130 0.00 0.00 32.16 2.66
3760 3928 5.394993 GGATTAGGCCGACTAGTTTACAGTT 60.395 44.000 0.00 0.00 32.16 3.16
3761 3929 4.099113 GGATTAGGCCGACTAGTTTACAGT 59.901 45.833 0.00 0.00 32.16 3.55
3762 3930 4.618965 GGATTAGGCCGACTAGTTTACAG 58.381 47.826 0.00 0.00 32.16 2.74
3763 3931 4.660789 GGATTAGGCCGACTAGTTTACA 57.339 45.455 0.00 0.00 32.16 2.41
3775 3943 1.067582 CGTGAGGACGGATTAGGCC 59.932 63.158 0.00 0.00 42.18 5.19
3776 3944 1.591863 GCGTGAGGACGGATTAGGC 60.592 63.158 0.00 0.00 46.20 3.93
3777 3945 1.299165 CGCGTGAGGACGGATTAGG 60.299 63.158 0.00 0.00 46.20 2.69
3778 3946 1.944676 GCGCGTGAGGACGGATTAG 60.945 63.158 8.43 0.00 46.20 1.73
3779 3947 2.103538 GCGCGTGAGGACGGATTA 59.896 61.111 8.43 0.00 46.20 1.75
3799 3967 2.583319 CGTCATCTGCACGCCGAT 60.583 61.111 0.00 0.00 0.00 4.18
3837 4005 4.444838 CCGTCCGTCCGCCATTCA 62.445 66.667 0.00 0.00 0.00 2.57
3895 4067 1.438651 CGCGAAGACTTGGAATTGGA 58.561 50.000 0.00 0.00 0.00 3.53
3896 4068 0.447801 CCGCGAAGACTTGGAATTGG 59.552 55.000 8.23 0.00 0.00 3.16
3897 4069 0.447801 CCCGCGAAGACTTGGAATTG 59.552 55.000 8.23 0.00 0.00 2.32
3898 4070 1.305930 GCCCGCGAAGACTTGGAATT 61.306 55.000 8.23 0.00 0.00 2.17
3899 4071 1.745489 GCCCGCGAAGACTTGGAAT 60.745 57.895 8.23 0.00 0.00 3.01
3900 4072 2.358247 GCCCGCGAAGACTTGGAA 60.358 61.111 8.23 0.00 0.00 3.53
3901 4073 4.735132 CGCCCGCGAAGACTTGGA 62.735 66.667 8.23 0.00 42.83 3.53
3936 4108 3.793144 CACGCGGCAAAGCTCTCC 61.793 66.667 12.47 0.00 34.40 3.71
3937 4109 2.607892 AACACGCGGCAAAGCTCTC 61.608 57.895 12.47 0.00 34.40 3.20
3938 4110 2.591715 AACACGCGGCAAAGCTCT 60.592 55.556 12.47 0.00 34.40 4.09
3940 4112 2.770589 AACAACACGCGGCAAAGCT 61.771 52.632 12.47 0.00 34.40 3.74
3941 4113 2.278531 AACAACACGCGGCAAAGC 60.279 55.556 12.47 0.00 0.00 3.51
3942 4114 0.929824 CTCAACAACACGCGGCAAAG 60.930 55.000 12.47 0.00 0.00 2.77
3943 4115 1.063327 CTCAACAACACGCGGCAAA 59.937 52.632 12.47 0.00 0.00 3.68
3944 4116 1.771073 CTCTCAACAACACGCGGCAA 61.771 55.000 12.47 0.00 0.00 4.52
3945 4117 2.202946 TCTCAACAACACGCGGCA 60.203 55.556 12.47 0.00 0.00 5.69
3946 4118 2.159272 GACTCTCAACAACACGCGGC 62.159 60.000 12.47 0.00 0.00 6.53
3947 4119 0.874175 TGACTCTCAACAACACGCGG 60.874 55.000 12.47 1.27 0.00 6.46
3948 4120 0.504384 CTGACTCTCAACAACACGCG 59.496 55.000 3.53 3.53 0.00 6.01
3949 4121 0.861837 CCTGACTCTCAACAACACGC 59.138 55.000 0.00 0.00 0.00 5.34
3950 4122 1.502231 CCCTGACTCTCAACAACACG 58.498 55.000 0.00 0.00 0.00 4.49
3951 4123 1.416401 TCCCCTGACTCTCAACAACAC 59.584 52.381 0.00 0.00 0.00 3.32
3952 4124 1.416401 GTCCCCTGACTCTCAACAACA 59.584 52.381 0.00 0.00 38.53 3.33
3953 4125 1.605712 CGTCCCCTGACTCTCAACAAC 60.606 57.143 0.00 0.00 39.47 3.32
3954 4126 0.679505 CGTCCCCTGACTCTCAACAA 59.320 55.000 0.00 0.00 39.47 2.83
3955 4127 0.469331 ACGTCCCCTGACTCTCAACA 60.469 55.000 0.00 0.00 39.47 3.33
3956 4128 0.244178 GACGTCCCCTGACTCTCAAC 59.756 60.000 3.51 0.00 39.47 3.18
3957 4129 1.241990 CGACGTCCCCTGACTCTCAA 61.242 60.000 10.58 0.00 39.47 3.02
3958 4130 1.674651 CGACGTCCCCTGACTCTCA 60.675 63.158 10.58 0.00 39.47 3.27
3959 4131 2.408241 CCGACGTCCCCTGACTCTC 61.408 68.421 10.58 0.00 39.47 3.20
3960 4132 2.361357 CCGACGTCCCCTGACTCT 60.361 66.667 10.58 0.00 39.47 3.24
3961 4133 2.675772 ACCGACGTCCCCTGACTC 60.676 66.667 10.58 0.00 39.47 3.36
3962 4134 2.989824 CACCGACGTCCCCTGACT 60.990 66.667 10.58 0.00 39.47 3.41
3963 4135 2.987547 TCACCGACGTCCCCTGAC 60.988 66.667 10.58 0.00 38.18 3.51
3964 4136 2.675423 CTCACCGACGTCCCCTGA 60.675 66.667 10.58 7.10 0.00 3.86
3965 4137 2.989824 ACTCACCGACGTCCCCTG 60.990 66.667 10.58 2.69 0.00 4.45
3966 4138 2.989824 CACTCACCGACGTCCCCT 60.990 66.667 10.58 0.00 0.00 4.79
3967 4139 4.736896 GCACTCACCGACGTCCCC 62.737 72.222 10.58 0.00 0.00 4.81
3968 4140 4.736896 GGCACTCACCGACGTCCC 62.737 72.222 10.58 0.00 0.00 4.46
4008 4180 3.135712 TCTTGGAAAGGTCAGTACAGCAA 59.864 43.478 0.00 0.00 46.24 3.91
4009 4181 2.703536 TCTTGGAAAGGTCAGTACAGCA 59.296 45.455 0.00 0.00 46.24 4.41
4010 4182 3.067833 GTCTTGGAAAGGTCAGTACAGC 58.932 50.000 0.00 0.00 46.24 4.40
4011 4183 3.071023 TGGTCTTGGAAAGGTCAGTACAG 59.929 47.826 0.00 0.00 46.24 2.74
4012 4184 3.042682 TGGTCTTGGAAAGGTCAGTACA 58.957 45.455 0.00 0.00 46.24 2.90
4015 4187 3.117512 ACAATGGTCTTGGAAAGGTCAGT 60.118 43.478 0.00 0.00 46.24 3.41
4027 4199 5.242393 CCAAGTCTCAAATGACAATGGTCTT 59.758 40.000 1.02 0.00 44.61 3.01
4037 4209 4.780815 AGTTGTGACCAAGTCTCAAATGA 58.219 39.130 12.31 0.00 44.00 2.57
4045 4217 1.953559 TGCTGAGTTGTGACCAAGTC 58.046 50.000 3.83 3.83 46.75 3.01
4046 4218 2.418368 TTGCTGAGTTGTGACCAAGT 57.582 45.000 0.00 0.00 36.93 3.16
4047 4219 3.996150 ATTTGCTGAGTTGTGACCAAG 57.004 42.857 0.00 0.00 0.00 3.61
4048 4220 4.431809 CAAATTTGCTGAGTTGTGACCAA 58.568 39.130 5.01 0.00 0.00 3.67
4049 4221 4.044336 CAAATTTGCTGAGTTGTGACCA 57.956 40.909 5.01 0.00 0.00 4.02
4069 4241 9.276590 CCTCATTAACTCATTGACATATAAGCA 57.723 33.333 0.00 0.00 0.00 3.91
4070 4242 9.494271 TCCTCATTAACTCATTGACATATAAGC 57.506 33.333 0.00 0.00 0.00 3.09
4074 4246 9.152327 TCTCTCCTCATTAACTCATTGACATAT 57.848 33.333 0.00 0.00 0.00 1.78
4075 4247 8.539117 TCTCTCCTCATTAACTCATTGACATA 57.461 34.615 0.00 0.00 0.00 2.29
4076 4248 7.344093 TCTCTCTCCTCATTAACTCATTGACAT 59.656 37.037 0.00 0.00 0.00 3.06
4077 4249 6.665248 TCTCTCTCCTCATTAACTCATTGACA 59.335 38.462 0.00 0.00 0.00 3.58
4078 4250 7.106439 TCTCTCTCCTCATTAACTCATTGAC 57.894 40.000 0.00 0.00 0.00 3.18
4079 4251 7.911130 ATCTCTCTCCTCATTAACTCATTGA 57.089 36.000 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.