Multiple sequence alignment - TraesCS2B01G418400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G418400 chr2B 100.000 4883 0 0 1 4883 599594160 599599042 0.000000e+00 9018.0
1 TraesCS2B01G418400 chr2B 96.923 65 0 2 4039 4101 598554337 598554401 1.860000e-19 108.0
2 TraesCS2B01G418400 chr2B 91.026 78 5 2 4024 4101 254640036 254640111 2.400000e-18 104.0
3 TraesCS2B01G418400 chr2B 82.178 101 16 2 188 286 90417973 90418073 8.710000e-13 86.1
4 TraesCS2B01G418400 chr2A 93.152 1767 77 11 1854 3586 653678530 653680286 0.000000e+00 2553.0
5 TraesCS2B01G418400 chr2A 90.249 1046 51 18 851 1871 653677489 653678508 0.000000e+00 1319.0
6 TraesCS2B01G418400 chr2A 88.903 811 42 18 4101 4880 653680762 653681555 0.000000e+00 955.0
7 TraesCS2B01G418400 chr2A 95.238 462 16 4 3586 4043 653680318 653680777 0.000000e+00 726.0
8 TraesCS2B01G418400 chr2A 86.531 245 24 4 296 539 653676739 653676975 1.350000e-65 261.0
9 TraesCS2B01G418400 chr2A 86.228 167 9 6 535 689 653677247 653677411 8.410000e-38 169.0
10 TraesCS2B01G418400 chr2D 92.535 1621 85 13 1970 3580 509942374 509943968 0.000000e+00 2290.0
11 TraesCS2B01G418400 chr2D 90.296 1587 63 30 317 1871 509940737 509942264 0.000000e+00 1993.0
12 TraesCS2B01G418400 chr2D 91.457 796 35 18 4101 4883 509944433 509945208 0.000000e+00 1062.0
13 TraesCS2B01G418400 chr2D 93.231 458 16 5 3586 4043 509944006 509944448 0.000000e+00 660.0
14 TraesCS2B01G418400 chr2D 92.019 213 14 3 4 215 509940173 509940383 3.700000e-76 296.0
15 TraesCS2B01G418400 chr2D 97.895 95 2 0 1854 1948 509942285 509942379 1.090000e-36 165.0
16 TraesCS2B01G418400 chr6A 77.425 1103 204 35 2327 3406 475000347 474999267 2.500000e-172 616.0
17 TraesCS2B01G418400 chr6A 89.952 418 41 1 1305 1721 475001603 475001186 5.560000e-149 538.0
18 TraesCS2B01G418400 chr6A 96.875 64 1 1 4040 4102 48529296 48529359 6.680000e-19 106.0
19 TraesCS2B01G418400 chr6B 89.952 418 41 1 1305 1721 485291590 485292007 5.560000e-149 538.0
20 TraesCS2B01G418400 chr6B 80.619 614 105 10 2323 2925 485292906 485293516 3.440000e-126 462.0
21 TraesCS2B01G418400 chr6D 89.713 418 42 1 1305 1721 335377048 335376631 2.590000e-147 532.0
22 TraesCS2B01G418400 chr6D 81.006 616 94 15 2327 2925 335375779 335375170 7.400000e-128 468.0
23 TraesCS2B01G418400 chr1D 86.408 103 13 1 183 284 169066416 169066314 1.440000e-20 111.0
24 TraesCS2B01G418400 chr1D 85.567 97 10 4 184 279 75934911 75935004 1.120000e-16 99.0
25 TraesCS2B01G418400 chr1D 81.132 106 14 6 183 286 19300350 19300451 4.050000e-11 80.5
26 TraesCS2B01G418400 chr7B 95.455 66 1 2 4042 4106 429371625 429371689 2.400000e-18 104.0
27 TraesCS2B01G418400 chr7A 95.385 65 3 0 4042 4106 726985549 726985485 2.400000e-18 104.0
28 TraesCS2B01G418400 chr7A 84.694 98 12 3 184 279 215680362 215680266 1.450000e-15 95.3
29 TraesCS2B01G418400 chr5D 94.203 69 3 1 4034 4101 323850084 323850152 2.400000e-18 104.0
30 TraesCS2B01G418400 chr5D 82.796 93 15 1 183 274 485763807 485763899 1.130000e-11 82.4
31 TraesCS2B01G418400 chr4A 98.305 59 1 0 4043 4101 666451126 666451068 2.400000e-18 104.0
32 TraesCS2B01G418400 chr3B 95.455 66 2 1 4041 4106 675677406 675677342 2.400000e-18 104.0
33 TraesCS2B01G418400 chr3B 93.056 72 2 2 4030 4101 716316812 716316880 8.650000e-18 102.0
34 TraesCS2B01G418400 chr3A 82.857 105 15 3 184 286 693197863 693197966 1.870000e-14 91.6
35 TraesCS2B01G418400 chr3A 81.905 105 18 1 183 286 736633010 736632906 2.420000e-13 87.9
36 TraesCS2B01G418400 chr5A 80.374 107 17 4 183 287 87891938 87891834 1.460000e-10 78.7
37 TraesCS2B01G418400 chr3D 100.000 30 0 0 5 34 2940687 2940658 6.830000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G418400 chr2B 599594160 599599042 4882 False 9018.000000 9018 100.000000 1 4883 1 chr2B.!!$F4 4882
1 TraesCS2B01G418400 chr2A 653676739 653681555 4816 False 997.166667 2553 90.050167 296 4880 6 chr2A.!!$F1 4584
2 TraesCS2B01G418400 chr2D 509940173 509945208 5035 False 1077.666667 2290 92.905500 4 4883 6 chr2D.!!$F1 4879
3 TraesCS2B01G418400 chr6A 474999267 475001603 2336 True 577.000000 616 83.688500 1305 3406 2 chr6A.!!$R1 2101
4 TraesCS2B01G418400 chr6B 485291590 485293516 1926 False 500.000000 538 85.285500 1305 2925 2 chr6B.!!$F1 1620
5 TraesCS2B01G418400 chr6D 335375170 335377048 1878 True 500.000000 532 85.359500 1305 2925 2 chr6D.!!$R1 1620

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
830 1401 0.105964 TCCACCTAATCAATCGCCCG 59.894 55.000 0.00 0.00 0.00 6.13 F
831 1402 0.884704 CCACCTAATCAATCGCCCGG 60.885 60.000 0.00 0.00 0.00 5.73 F
833 1404 1.071471 CCTAATCAATCGCCCGGCT 59.929 57.895 8.05 0.00 0.00 5.52 F
835 1406 1.284982 CTAATCAATCGCCCGGCTCG 61.285 60.000 8.05 1.09 0.00 5.03 F
2741 4202 1.383803 GCAGAGGACCAGGGAGGAT 60.384 63.158 0.00 0.00 41.22 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2551 3982 0.537188 GTTTGAGGGGCGATCAGAGA 59.463 55.000 0.0 0.00 0.00 3.10 R
2741 4202 0.947660 CTTGCTGCTCTGCGTTCAGA 60.948 55.000 0.0 0.00 46.43 3.27 R
3034 4495 1.076923 GTCACTAGCCTCCGGGAGA 60.077 63.158 25.6 4.63 33.58 3.71 R
3045 4506 2.480416 GCGACCTCCTTGATGTCACTAG 60.480 54.545 0.0 0.00 29.79 2.57 R
4300 5811 0.106419 AAGGGCAAAACCACCGAAGA 60.106 50.000 0.0 0.00 42.05 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 107 8.547481 AAGAAAAAGGAGATTAAAACCCTTGA 57.453 30.769 0.00 0.00 38.85 3.02
145 147 9.979578 AACAAACATTTATGTACACAATCACAT 57.020 25.926 0.00 0.00 40.80 3.21
197 199 6.438425 ACAACCAGAAGCAGGATTTGATAAAT 59.562 34.615 0.00 0.00 0.00 1.40
248 287 5.327616 TCCGGTAAATCTCAAATCACGTA 57.672 39.130 0.00 0.00 0.00 3.57
250 289 4.025979 CCGGTAAATCTCAAATCACGTAGC 60.026 45.833 0.00 0.00 0.00 3.58
252 291 5.276395 CGGTAAATCTCAAATCACGTAGCAG 60.276 44.000 0.00 0.00 0.00 4.24
253 292 5.810587 GGTAAATCTCAAATCACGTAGCAGA 59.189 40.000 0.00 0.00 0.00 4.26
254 293 6.312918 GGTAAATCTCAAATCACGTAGCAGAA 59.687 38.462 0.00 0.00 0.00 3.02
256 295 9.031360 GTAAATCTCAAATCACGTAGCAGAATA 57.969 33.333 0.00 0.00 0.00 1.75
258 297 8.668510 AATCTCAAATCACGTAGCAGAATATT 57.331 30.769 0.00 0.00 0.00 1.28
260 299 9.764363 ATCTCAAATCACGTAGCAGAATATTTA 57.236 29.630 0.00 0.00 0.00 1.40
267 306 9.809096 ATCACGTAGCAGAATATTTATATCCTG 57.191 33.333 0.00 0.00 0.00 3.86
270 309 9.424319 ACGTAGCAGAATATTTATATCCTGTTG 57.576 33.333 0.00 0.00 0.00 3.33
272 311 9.219603 GTAGCAGAATATTTATATCCTGTTGCA 57.780 33.333 0.00 0.00 0.00 4.08
273 312 8.696043 AGCAGAATATTTATATCCTGTTGCAA 57.304 30.769 0.00 0.00 0.00 4.08
274 313 8.571336 AGCAGAATATTTATATCCTGTTGCAAC 58.429 33.333 22.83 22.83 0.00 4.17
275 314 8.352201 GCAGAATATTTATATCCTGTTGCAACA 58.648 33.333 29.36 29.36 37.37 3.33
278 317 9.450807 GAATATTTATATCCTGTTGCAACACAC 57.549 33.333 27.96 3.39 34.70 3.82
280 319 5.878332 TTATATCCTGTTGCAACACACAG 57.122 39.130 27.96 17.88 34.70 3.66
281 320 2.346766 ATCCTGTTGCAACACACAGA 57.653 45.000 27.96 20.47 34.70 3.41
282 321 1.378531 TCCTGTTGCAACACACAGAC 58.621 50.000 27.96 0.45 34.70 3.51
283 322 1.093972 CCTGTTGCAACACACAGACA 58.906 50.000 27.96 5.77 34.70 3.41
284 323 1.677576 CCTGTTGCAACACACAGACAT 59.322 47.619 27.96 0.00 34.70 3.06
286 325 3.314913 CCTGTTGCAACACACAGACATTA 59.685 43.478 27.96 2.92 34.70 1.90
287 326 4.282068 CTGTTGCAACACACAGACATTAC 58.718 43.478 27.96 0.00 34.70 1.89
289 328 1.870402 TGCAACACACAGACATTACGG 59.130 47.619 0.00 0.00 0.00 4.02
290 329 1.871039 GCAACACACAGACATTACGGT 59.129 47.619 0.00 0.00 0.00 4.83
291 330 3.061322 GCAACACACAGACATTACGGTA 58.939 45.455 0.00 0.00 0.00 4.02
292 331 3.495377 GCAACACACAGACATTACGGTAA 59.505 43.478 2.62 2.62 0.00 2.85
293 332 4.377022 GCAACACACAGACATTACGGTAAG 60.377 45.833 6.74 2.02 0.00 2.34
294 333 3.323243 ACACACAGACATTACGGTAAGC 58.677 45.455 6.74 0.00 0.00 3.09
301 340 3.118775 AGACATTACGGTAAGCATGCTCA 60.119 43.478 22.93 2.34 0.00 4.26
314 568 2.117137 CATGCTCAATTTGCATCGCTC 58.883 47.619 11.47 0.00 46.80 5.03
318 572 0.726827 TCAATTTGCATCGCTCGACC 59.273 50.000 0.00 0.00 0.00 4.79
321 575 0.811616 ATTTGCATCGCTCGACCCTC 60.812 55.000 0.00 0.00 0.00 4.30
326 580 1.239347 CATCGCTCGACCCTCTATGA 58.761 55.000 0.00 0.00 0.00 2.15
460 717 2.685017 TCGCTCCACTGCATCCCT 60.685 61.111 0.00 0.00 0.00 4.20
502 763 3.121030 CAAGCAAGGACCGGAGCG 61.121 66.667 9.46 0.00 0.00 5.03
532 793 6.928492 CCAAACATTTACTGCAGTGGTTTAAT 59.072 34.615 29.57 16.03 0.00 1.40
550 1087 5.786264 TTAATTCCTTACCAAAACCGCAA 57.214 34.783 0.00 0.00 0.00 4.85
551 1088 3.934457 ATTCCTTACCAAAACCGCAAG 57.066 42.857 0.00 0.00 0.00 4.01
552 1089 0.955905 TCCTTACCAAAACCGCAAGC 59.044 50.000 0.00 0.00 0.00 4.01
553 1090 0.386731 CCTTACCAAAACCGCAAGCG 60.387 55.000 7.60 7.60 39.44 4.68
604 1163 0.179161 GCAGATACGCTCGTCACACT 60.179 55.000 0.00 0.00 0.00 3.55
629 1190 1.802365 GAATACCGTGTGACGCCTTTT 59.198 47.619 0.00 0.00 40.91 2.27
630 1191 1.886886 ATACCGTGTGACGCCTTTTT 58.113 45.000 0.00 0.00 40.91 1.94
679 1243 2.035321 ACAGTTGCCAAATACCAAACGG 59.965 45.455 0.00 0.00 0.00 4.44
680 1244 2.294791 CAGTTGCCAAATACCAAACGGA 59.705 45.455 0.00 0.00 0.00 4.69
738 1309 1.202211 CCGCGTGCTAAATTTAACCCC 60.202 52.381 4.92 0.00 0.00 4.95
739 1310 1.530236 CGCGTGCTAAATTTAACCCCG 60.530 52.381 0.00 2.13 0.00 5.73
740 1311 1.738908 GCGTGCTAAATTTAACCCCGA 59.261 47.619 10.27 0.00 0.00 5.14
741 1312 2.223180 GCGTGCTAAATTTAACCCCGAG 60.223 50.000 10.27 0.00 0.00 4.63
742 1313 2.223180 CGTGCTAAATTTAACCCCGAGC 60.223 50.000 0.00 0.00 0.00 5.03
743 1314 2.098607 GTGCTAAATTTAACCCCGAGCC 59.901 50.000 0.00 0.00 0.00 4.70
744 1315 1.332686 GCTAAATTTAACCCCGAGCCG 59.667 52.381 0.00 0.00 0.00 5.52
775 1346 1.454479 CCGCTCTCCCATGCCAAAT 60.454 57.895 0.00 0.00 0.00 2.32
813 1384 4.426313 CCTTTCCACGGCCCCTCC 62.426 72.222 0.00 0.00 0.00 4.30
814 1385 3.646715 CTTTCCACGGCCCCTCCA 61.647 66.667 0.00 0.00 34.01 3.86
819 1390 3.006728 CACGGCCCCTCCACCTAA 61.007 66.667 0.00 0.00 34.01 2.69
820 1391 2.042261 ACGGCCCCTCCACCTAAT 59.958 61.111 0.00 0.00 34.01 1.73
822 1393 2.070039 CGGCCCCTCCACCTAATCA 61.070 63.158 0.00 0.00 34.01 2.57
823 1394 1.632018 CGGCCCCTCCACCTAATCAA 61.632 60.000 0.00 0.00 34.01 2.57
824 1395 0.853530 GGCCCCTCCACCTAATCAAT 59.146 55.000 0.00 0.00 34.01 2.57
826 1397 1.543429 GCCCCTCCACCTAATCAATCG 60.543 57.143 0.00 0.00 0.00 3.34
830 1401 0.105964 TCCACCTAATCAATCGCCCG 59.894 55.000 0.00 0.00 0.00 6.13
831 1402 0.884704 CCACCTAATCAATCGCCCGG 60.885 60.000 0.00 0.00 0.00 5.73
832 1403 1.227853 ACCTAATCAATCGCCCGGC 60.228 57.895 0.00 0.00 0.00 6.13
833 1404 1.071471 CCTAATCAATCGCCCGGCT 59.929 57.895 8.05 0.00 0.00 5.52
835 1406 1.284982 CTAATCAATCGCCCGGCTCG 61.285 60.000 8.05 1.09 0.00 5.03
849 1420 3.597728 CTCGGCTCCCTCGGCTAC 61.598 72.222 0.00 0.00 0.00 3.58
852 1423 4.862823 GGCTCCCTCGGCTACCCT 62.863 72.222 0.00 0.00 0.00 4.34
853 1424 2.197875 GCTCCCTCGGCTACCCTA 59.802 66.667 0.00 0.00 0.00 3.53
854 1425 2.201708 GCTCCCTCGGCTACCCTAC 61.202 68.421 0.00 0.00 0.00 3.18
855 1426 1.897615 CTCCCTCGGCTACCCTACG 60.898 68.421 0.00 0.00 0.00 3.51
856 1427 3.603671 CCCTCGGCTACCCTACGC 61.604 72.222 0.00 0.00 0.00 4.42
857 1428 3.962421 CCTCGGCTACCCTACGCG 61.962 72.222 3.53 3.53 0.00 6.01
982 1563 1.453015 GGAGAGGAGAGCAGAGCGA 60.453 63.158 0.00 0.00 0.00 4.93
1416 2012 4.849329 CTCGTGTACCGGGAGCGC 62.849 72.222 6.32 0.00 40.44 5.92
1602 2198 2.380410 CGACAAGTTCCGCTTCCCG 61.380 63.158 0.00 0.00 34.69 5.14
1755 2356 2.440539 TCTCAGTCGCTTGTCCTTTC 57.559 50.000 0.00 0.00 0.00 2.62
1958 2605 3.055209 GGGAACGAGCTTTACTCCTTT 57.945 47.619 0.00 0.00 43.01 3.11
1965 2612 6.782298 ACGAGCTTTACTCCTTTAGAAAAC 57.218 37.500 0.00 0.00 43.01 2.43
1970 2617 6.937465 AGCTTTACTCCTTTAGAAAACCAGAG 59.063 38.462 0.00 0.00 0.00 3.35
1972 2619 7.876582 GCTTTACTCCTTTAGAAAACCAGAGTA 59.123 37.037 0.00 0.00 35.00 2.59
1973 2620 9.425577 CTTTACTCCTTTAGAAAACCAGAGTAG 57.574 37.037 0.00 0.00 36.87 2.57
1974 2621 5.795972 ACTCCTTTAGAAAACCAGAGTAGC 58.204 41.667 0.00 0.00 31.62 3.58
1975 2622 4.817517 TCCTTTAGAAAACCAGAGTAGCG 58.182 43.478 0.00 0.00 0.00 4.26
2030 2701 2.264005 AAAGTATCCCACGTGCACAA 57.736 45.000 18.64 0.00 0.00 3.33
2055 2726 2.046892 AAATCTGCACGCCGAGCT 60.047 55.556 8.20 0.00 0.00 4.09
2092 2763 3.634397 TCTTTGCCGGATCAGATTCTT 57.366 42.857 5.05 0.00 0.00 2.52
2098 2769 2.551459 GCCGGATCAGATTCTTGGAATG 59.449 50.000 5.05 0.00 0.00 2.67
2104 2775 6.002704 GGATCAGATTCTTGGAATGCACTAT 58.997 40.000 0.00 0.00 0.00 2.12
2105 2776 6.072618 GGATCAGATTCTTGGAATGCACTATG 60.073 42.308 0.00 0.00 0.00 2.23
2106 2777 5.748402 TCAGATTCTTGGAATGCACTATGT 58.252 37.500 0.00 0.00 0.00 2.29
2144 2815 3.055963 GTGATGTTGAATTGGATTGCCCA 60.056 43.478 0.00 0.00 44.93 5.36
2159 2830 1.836391 CCCAGTCACAGTTCCACCA 59.164 57.895 0.00 0.00 0.00 4.17
2270 2999 4.891168 TGATAAGCTGATTGCACCATTCAT 59.109 37.500 0.00 0.00 45.94 2.57
2551 3982 1.955080 GCAGCTCTACGGTATGTACCT 59.045 52.381 7.56 0.00 44.25 3.08
2598 4054 5.066375 CAGGCATCGATAAATTTTCACTGGA 59.934 40.000 0.00 0.00 0.00 3.86
2713 4174 2.670414 CGATCAACTGGAAGAAGCACTC 59.330 50.000 0.00 0.00 37.43 3.51
2741 4202 1.383803 GCAGAGGACCAGGGAGGAT 60.384 63.158 0.00 0.00 41.22 3.24
2932 4393 1.732259 CGCTGCCTGGTAAAGTAGTTG 59.268 52.381 0.00 0.00 0.00 3.16
3169 4630 4.454504 ACTGCCGAAATGTTTAACGAAGAT 59.545 37.500 0.00 0.00 0.00 2.40
3409 4870 2.486191 CCAAGACTGGTGAGTTCTTGCT 60.486 50.000 5.25 0.00 36.74 3.91
3480 4947 3.305398 GGTGTGTAACCTCTCTCTGTG 57.695 52.381 0.00 0.00 46.55 3.66
3482 4949 3.069729 GGTGTGTAACCTCTCTCTGTGTT 59.930 47.826 0.00 0.00 46.55 3.32
3580 5047 3.214328 CAAGGACAGGTAAACACAAGCT 58.786 45.455 0.00 0.00 0.00 3.74
3600 5099 3.861689 GCTGCAGTTGGCTAATTCAAATC 59.138 43.478 16.64 0.00 45.15 2.17
3623 5124 6.245408 TCATATAAGCTGTTTTCACCTGGTT 58.755 36.000 0.00 0.00 0.00 3.67
3624 5125 7.398829 TCATATAAGCTGTTTTCACCTGGTTA 58.601 34.615 0.00 0.00 0.00 2.85
4024 5527 4.142752 GGGTAGTTCGTTTGGTGAAATAGC 60.143 45.833 4.41 4.41 41.19 2.97
4029 5532 6.665465 AGTTCGTTTGGTGAAATAGCTAAAC 58.335 36.000 0.00 0.00 0.00 2.01
4030 5533 6.261381 AGTTCGTTTGGTGAAATAGCTAAACA 59.739 34.615 0.00 0.00 32.43 2.83
4031 5534 6.811253 TCGTTTGGTGAAATAGCTAAACAT 57.189 33.333 0.00 0.00 32.43 2.71
4032 5535 7.908827 TCGTTTGGTGAAATAGCTAAACATA 57.091 32.000 0.00 0.00 32.43 2.29
4033 5536 7.970384 TCGTTTGGTGAAATAGCTAAACATAG 58.030 34.615 0.00 0.00 32.43 2.23
4034 5537 7.604927 TCGTTTGGTGAAATAGCTAAACATAGT 59.395 33.333 0.00 0.00 32.43 2.12
4035 5538 7.692291 CGTTTGGTGAAATAGCTAAACATAGTG 59.308 37.037 0.00 0.00 32.43 2.74
4036 5539 7.624360 TTGGTGAAATAGCTAAACATAGTGG 57.376 36.000 0.00 0.00 0.00 4.00
4037 5540 6.953101 TGGTGAAATAGCTAAACATAGTGGA 58.047 36.000 0.00 0.00 0.00 4.02
4038 5541 7.047891 TGGTGAAATAGCTAAACATAGTGGAG 58.952 38.462 0.00 0.00 0.00 3.86
4039 5542 7.093068 TGGTGAAATAGCTAAACATAGTGGAGA 60.093 37.037 0.00 0.00 0.00 3.71
4040 5543 7.224949 GGTGAAATAGCTAAACATAGTGGAGAC 59.775 40.741 0.00 0.00 0.00 3.36
4041 5544 7.764443 GTGAAATAGCTAAACATAGTGGAGACA 59.236 37.037 0.00 0.00 38.70 3.41
4042 5545 8.486210 TGAAATAGCTAAACATAGTGGAGACAT 58.514 33.333 0.00 0.00 46.14 3.06
4043 5546 9.331282 GAAATAGCTAAACATAGTGGAGACATT 57.669 33.333 0.00 0.00 46.14 2.71
4044 5547 9.686683 AAATAGCTAAACATAGTGGAGACATTT 57.313 29.630 0.00 0.00 46.14 2.32
4045 5548 9.686683 AATAGCTAAACATAGTGGAGACATTTT 57.313 29.630 0.00 0.00 46.14 1.82
4046 5549 9.686683 ATAGCTAAACATAGTGGAGACATTTTT 57.313 29.630 0.00 0.00 46.14 1.94
4079 5582 4.247380 CTCCCCGGCCTCTGCATC 62.247 72.222 0.00 0.00 40.13 3.91
4081 5584 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
4082 5585 3.473647 CCCGGCCTCTGCATCAGA 61.474 66.667 0.00 0.00 38.25 3.27
4083 5586 2.586245 CCGGCCTCTGCATCAGAA 59.414 61.111 0.00 0.00 40.18 3.02
4084 5587 1.817099 CCGGCCTCTGCATCAGAAC 60.817 63.158 0.00 0.00 40.18 3.01
4085 5588 2.169789 CGGCCTCTGCATCAGAACG 61.170 63.158 0.00 0.63 40.18 3.95
4086 5589 1.219124 GGCCTCTGCATCAGAACGA 59.781 57.895 0.00 0.00 40.18 3.85
4087 5590 0.179062 GGCCTCTGCATCAGAACGAT 60.179 55.000 0.00 0.00 40.18 3.73
4096 5599 1.193203 CATCAGAACGATGCATACGGC 59.807 52.381 18.34 11.86 44.95 5.68
4097 5600 0.529773 TCAGAACGATGCATACGGCC 60.530 55.000 18.34 0.00 43.89 6.13
4098 5601 0.809636 CAGAACGATGCATACGGCCA 60.810 55.000 18.34 0.00 43.89 5.36
4099 5602 0.810031 AGAACGATGCATACGGCCAC 60.810 55.000 18.34 9.37 43.89 5.01
4100 5603 1.078778 AACGATGCATACGGCCACA 60.079 52.632 18.34 0.00 43.89 4.17
4101 5604 0.675208 AACGATGCATACGGCCACAA 60.675 50.000 18.34 0.00 43.89 3.33
4129 5632 2.027192 GGAGACATGCCCAAGTCTGTTA 60.027 50.000 10.50 0.00 44.61 2.41
4209 5716 6.092807 GGGTAGACAGAGATTTCATTGTGTTC 59.907 42.308 0.00 0.00 0.00 3.18
4276 5783 6.826668 TGTTCTGTCTTCCTTACTGAATCAA 58.173 36.000 0.00 0.00 37.22 2.57
4300 5811 9.014297 CAAACCCAAGAATGATAAGAGTACTTT 57.986 33.333 0.00 0.00 37.53 2.66
4309 5820 5.962433 TGATAAGAGTACTTTCTTCGGTGG 58.038 41.667 0.00 0.00 38.35 4.61
4313 5824 5.032327 AGAGTACTTTCTTCGGTGGTTTT 57.968 39.130 0.00 0.00 0.00 2.43
4316 5827 1.407618 ACTTTCTTCGGTGGTTTTGCC 59.592 47.619 0.00 0.00 37.90 4.52
4326 5837 3.431068 CGGTGGTTTTGCCCTTAACTTTT 60.431 43.478 0.00 0.00 36.04 2.27
4428 5939 4.409588 CGTCGTGAAACAGCCGCG 62.410 66.667 0.00 0.00 35.74 6.46
4487 5998 0.246635 GGACTGCCGCTCTGAACTTA 59.753 55.000 0.00 0.00 0.00 2.24
4488 5999 1.351153 GACTGCCGCTCTGAACTTAC 58.649 55.000 0.00 0.00 0.00 2.34
4490 6001 0.037326 CTGCCGCTCTGAACTTACCA 60.037 55.000 0.00 0.00 0.00 3.25
4519 6049 4.715534 TGACCTTCCATCTGGTTGTAAA 57.284 40.909 0.00 0.00 36.59 2.01
4543 6074 3.472652 TTGGTGTACCACACTAAAGCAG 58.527 45.455 2.61 0.00 44.69 4.24
4639 6174 7.360575 AGCTAACAATTACCGAAACTTGTAG 57.639 36.000 0.00 0.00 31.88 2.74
4640 6175 7.156673 AGCTAACAATTACCGAAACTTGTAGA 58.843 34.615 0.00 0.00 31.88 2.59
4721 6256 1.070786 GTCAGGGTCGGTGCTGAAA 59.929 57.895 0.00 0.00 0.00 2.69
4722 6257 0.951040 GTCAGGGTCGGTGCTGAAAG 60.951 60.000 0.00 0.00 0.00 2.62
4735 6270 1.451067 CTGAAAGCAGGAGAGCAAGG 58.549 55.000 0.00 0.00 38.51 3.61
4849 6387 0.249398 ACGCCATACTGTTCTGTCCC 59.751 55.000 0.00 0.00 0.00 4.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.653836 AGGTGGTTGATTAGGGTACACAA 59.346 43.478 0.00 0.00 0.00 3.33
1 2 3.253220 AGGTGGTTGATTAGGGTACACA 58.747 45.455 0.00 0.00 0.00 3.72
2 3 3.994931 AGGTGGTTGATTAGGGTACAC 57.005 47.619 0.00 0.00 0.00 2.90
82 83 7.015292 GGTCAAGGGTTTTAATCTCCTTTTTCT 59.985 37.037 0.00 0.00 37.50 2.52
83 84 7.015292 AGGTCAAGGGTTTTAATCTCCTTTTTC 59.985 37.037 0.00 0.00 37.50 2.29
84 85 6.844388 AGGTCAAGGGTTTTAATCTCCTTTTT 59.156 34.615 0.00 0.00 37.50 1.94
103 104 9.495572 AAATGTTTGTTTGTTTTTAGAGGTCAA 57.504 25.926 0.00 0.00 0.00 3.18
132 134 4.970662 AATCCTGCATGTGATTGTGTAC 57.029 40.909 5.70 0.00 30.28 2.90
171 173 4.365514 TCAAATCCTGCTTCTGGTTGTA 57.634 40.909 0.00 0.00 0.00 2.41
226 265 4.196626 ACGTGATTTGAGATTTACCGGA 57.803 40.909 9.46 0.00 0.00 5.14
228 267 4.565166 TGCTACGTGATTTGAGATTTACCG 59.435 41.667 0.00 0.00 0.00 4.02
248 287 8.571336 GTTGCAACAGGATATAAATATTCTGCT 58.429 33.333 24.52 3.85 46.03 4.24
250 289 9.669353 GTGTTGCAACAGGATATAAATATTCTG 57.331 33.333 31.81 14.30 47.00 3.02
252 291 9.450807 GTGTGTTGCAACAGGATATAAATATTC 57.549 33.333 31.81 15.10 40.05 1.75
253 292 8.965819 TGTGTGTTGCAACAGGATATAAATATT 58.034 29.630 31.81 0.00 40.05 1.28
254 293 8.518430 TGTGTGTTGCAACAGGATATAAATAT 57.482 30.769 31.81 0.00 40.05 1.28
256 295 6.658816 TCTGTGTGTTGCAACAGGATATAAAT 59.341 34.615 31.81 0.00 40.05 1.40
258 297 5.411361 GTCTGTGTGTTGCAACAGGATATAA 59.589 40.000 31.81 11.97 40.05 0.98
260 299 3.753272 GTCTGTGTGTTGCAACAGGATAT 59.247 43.478 31.81 0.00 40.05 1.63
262 301 1.949525 GTCTGTGTGTTGCAACAGGAT 59.050 47.619 31.81 0.00 40.05 3.24
264 303 1.093972 TGTCTGTGTGTTGCAACAGG 58.906 50.000 31.81 20.48 40.05 4.00
265 304 3.425577 AATGTCTGTGTGTTGCAACAG 57.574 42.857 31.81 20.17 40.05 3.16
266 305 3.242576 CGTAATGTCTGTGTGTTGCAACA 60.243 43.478 27.96 27.96 36.38 3.33
267 306 3.288242 CGTAATGTCTGTGTGTTGCAAC 58.712 45.455 22.83 22.83 0.00 4.17
270 309 1.871039 ACCGTAATGTCTGTGTGTTGC 59.129 47.619 0.00 0.00 0.00 4.17
272 311 3.744426 GCTTACCGTAATGTCTGTGTGTT 59.256 43.478 0.00 0.00 0.00 3.32
273 312 3.243941 TGCTTACCGTAATGTCTGTGTGT 60.244 43.478 0.00 0.00 0.00 3.72
274 313 3.322369 TGCTTACCGTAATGTCTGTGTG 58.678 45.455 0.00 0.00 0.00 3.82
275 314 3.671008 TGCTTACCGTAATGTCTGTGT 57.329 42.857 0.00 0.00 0.00 3.72
278 317 3.198068 AGCATGCTTACCGTAATGTCTG 58.802 45.455 16.30 0.00 0.00 3.51
280 319 3.194861 TGAGCATGCTTACCGTAATGTC 58.805 45.455 23.61 4.89 0.00 3.06
281 320 3.260475 TGAGCATGCTTACCGTAATGT 57.740 42.857 23.61 0.00 0.00 2.71
282 321 4.818534 ATTGAGCATGCTTACCGTAATG 57.181 40.909 23.61 0.00 0.00 1.90
283 322 5.581605 CAAATTGAGCATGCTTACCGTAAT 58.418 37.500 23.61 12.38 0.00 1.89
284 323 4.674101 GCAAATTGAGCATGCTTACCGTAA 60.674 41.667 23.61 10.69 37.12 3.18
286 325 2.415893 GCAAATTGAGCATGCTTACCGT 60.416 45.455 23.61 4.95 37.12 4.83
287 326 2.187707 GCAAATTGAGCATGCTTACCG 58.812 47.619 23.61 9.80 37.12 4.02
301 340 0.392998 AGGGTCGAGCGATGCAAATT 60.393 50.000 8.77 0.00 0.00 1.82
309 563 1.167155 GCTCATAGAGGGTCGAGCGA 61.167 60.000 8.77 0.00 41.26 4.93
314 568 0.678395 ATGCAGCTCATAGAGGGTCG 59.322 55.000 0.00 0.00 32.59 4.79
318 572 0.949588 CGGCATGCAGCTCATAGAGG 60.950 60.000 21.36 0.00 44.79 3.69
321 575 2.614446 GCCGGCATGCAGCTCATAG 61.614 63.158 24.80 2.47 44.79 2.23
340 594 1.467342 GTAACATGGGCGTCTTTGGTC 59.533 52.381 0.00 0.00 0.00 4.02
460 717 2.387125 GAAAGCGAAACTGTGCGGCA 62.387 55.000 0.00 0.00 35.87 5.69
462 719 1.082104 GGAAAGCGAAACTGTGCGG 60.082 57.895 5.65 0.00 35.87 5.69
502 763 3.004734 ACTGCAGTAAATGTTTGGCTCAC 59.995 43.478 20.16 0.00 0.00 3.51
520 781 5.715434 TTGGTAAGGAATTAAACCACTGC 57.285 39.130 0.00 0.00 41.58 4.40
532 793 1.338655 GCTTGCGGTTTTGGTAAGGAA 59.661 47.619 0.00 0.00 0.00 3.36
564 1101 3.128188 CCTCTGCTGCTGCTGCTG 61.128 66.667 27.67 26.32 40.48 4.41
568 1105 4.079850 CGGTCCTCTGCTGCTGCT 62.080 66.667 17.00 0.00 40.48 4.24
571 1108 4.079850 CTGCGGTCCTCTGCTGCT 62.080 66.667 0.00 0.00 45.38 4.24
629 1190 1.223487 GCCTCCGGTCTGCCATTAA 59.777 57.895 0.00 0.00 34.09 1.40
630 1191 2.742116 GGCCTCCGGTCTGCCATTA 61.742 63.158 21.36 0.00 44.70 1.90
767 1338 0.960364 AGGTGCGTTCGATTTGGCAT 60.960 50.000 0.00 0.00 37.77 4.40
813 1384 1.507141 GCCGGGCGATTGATTAGGTG 61.507 60.000 1.81 0.00 0.00 4.00
814 1385 1.227853 GCCGGGCGATTGATTAGGT 60.228 57.895 1.81 0.00 0.00 3.08
818 1389 2.588877 CGAGCCGGGCGATTGATT 60.589 61.111 14.39 0.00 0.00 2.57
819 1390 4.609018 CCGAGCCGGGCGATTGAT 62.609 66.667 14.39 0.00 44.15 2.57
832 1403 3.597728 GTAGCCGAGGGAGCCGAG 61.598 72.222 0.00 0.00 0.00 4.63
835 1406 3.447933 TAGGGTAGCCGAGGGAGCC 62.448 68.421 5.06 0.00 0.00 4.70
836 1407 2.197875 TAGGGTAGCCGAGGGAGC 59.802 66.667 5.06 0.00 0.00 4.70
838 1409 2.194056 CGTAGGGTAGCCGAGGGA 59.806 66.667 5.06 0.00 0.00 4.20
840 1411 3.962421 CGCGTAGGGTAGCCGAGG 61.962 72.222 5.06 7.38 34.98 4.63
841 1412 3.962421 CCGCGTAGGGTAGCCGAG 61.962 72.222 4.92 2.17 39.56 4.63
842 1413 3.399105 TACCGCGTAGGGTAGCCGA 62.399 63.158 4.92 0.00 46.96 5.54
843 1414 2.901840 TACCGCGTAGGGTAGCCG 60.902 66.667 4.92 0.00 46.96 5.52
844 1415 2.724377 GTACCGCGTAGGGTAGCC 59.276 66.667 4.92 1.60 43.01 3.93
845 1416 2.329339 CGTACCGCGTAGGGTAGC 59.671 66.667 4.92 0.00 43.01 3.58
846 1417 2.329339 GCGTACCGCGTAGGGTAG 59.671 66.667 4.92 0.00 44.55 3.18
856 1427 4.903010 CGGATTGGGGGCGTACCG 62.903 72.222 0.00 0.00 41.60 4.02
857 1428 3.456105 CTCGGATTGGGGGCGTACC 62.456 68.421 0.00 0.00 39.11 3.34
1331 1927 1.180029 GTACTCGGAGTACTTGGCCA 58.820 55.000 31.37 0.00 45.70 5.36
1738 2339 2.300152 AGATGAAAGGACAAGCGACTGA 59.700 45.455 0.00 0.00 0.00 3.41
1741 2342 2.413453 GTGAGATGAAAGGACAAGCGAC 59.587 50.000 0.00 0.00 0.00 5.19
1804 2405 3.054213 TCCTAAACCTCAATTAACCCCCG 60.054 47.826 0.00 0.00 0.00 5.73
1955 2602 4.092091 CAGCGCTACTCTGGTTTTCTAAAG 59.908 45.833 10.99 0.00 0.00 1.85
1958 2605 2.823747 TCAGCGCTACTCTGGTTTTCTA 59.176 45.455 10.99 0.00 32.63 2.10
1965 2612 2.086054 AAAGTTCAGCGCTACTCTGG 57.914 50.000 10.99 0.00 32.63 3.86
1970 2617 3.813529 ATGTGAAAAGTTCAGCGCTAC 57.186 42.857 10.99 5.74 41.01 3.58
1972 2619 2.880890 AGAATGTGAAAAGTTCAGCGCT 59.119 40.909 2.64 2.64 41.01 5.92
1973 2620 2.975851 CAGAATGTGAAAAGTTCAGCGC 59.024 45.455 0.00 0.00 41.01 5.92
2030 2701 2.076863 GGCGTGCAGATTTCTAACTGT 58.923 47.619 0.00 0.00 36.62 3.55
2055 2726 4.201666 GCAAAGAACAAACGCAAATGACAA 60.202 37.500 0.00 0.00 0.00 3.18
2092 2763 4.818005 CAGCAGATAACATAGTGCATTCCA 59.182 41.667 0.00 0.00 38.44 3.53
2098 2769 3.242543 GCACACAGCAGATAACATAGTGC 60.243 47.826 0.00 0.00 44.79 4.40
2144 2815 2.799126 TTTGTGGTGGAACTGTGACT 57.201 45.000 0.00 0.00 36.74 3.41
2159 2830 3.813443 CAGGGCTGCTACTATGATTTGT 58.187 45.455 0.00 0.00 0.00 2.83
2270 2999 9.073475 AGTAACTGAAAACCAAATTACTATGCA 57.927 29.630 0.00 0.00 36.10 3.96
2551 3982 0.537188 GTTTGAGGGGCGATCAGAGA 59.463 55.000 0.00 0.00 0.00 3.10
2598 4054 2.483877 CGTGTCCATGTGCACATTAAGT 59.516 45.455 29.48 6.86 35.51 2.24
2713 4174 3.003173 TCCTCTGCCACCCCTTCG 61.003 66.667 0.00 0.00 0.00 3.79
2741 4202 0.947660 CTTGCTGCTCTGCGTTCAGA 60.948 55.000 0.00 0.00 46.43 3.27
3034 4495 1.076923 GTCACTAGCCTCCGGGAGA 60.077 63.158 25.60 4.63 33.58 3.71
3045 4506 2.480416 GCGACCTCCTTGATGTCACTAG 60.480 54.545 0.00 0.00 29.79 2.57
3103 4564 3.505790 AATTCTGGGTGGCACGGCA 62.506 57.895 12.17 0.00 0.00 5.69
3169 4630 7.386851 CAACTCTCTTCTTCCATAACTTGGTA 58.613 38.462 0.00 0.00 46.52 3.25
3406 4867 1.246056 GGAGCCATGTTTGCAGAGCA 61.246 55.000 0.00 0.00 36.47 4.26
3409 4870 0.694771 AGAGGAGCCATGTTTGCAGA 59.305 50.000 0.00 0.00 0.00 4.26
3476 4942 0.599991 TCGCACCTGCAGTAACACAG 60.600 55.000 13.81 0.00 42.21 3.66
3480 4947 1.741770 CCCTCGCACCTGCAGTAAC 60.742 63.158 13.81 0.00 42.21 2.50
3482 4949 4.082523 GCCCTCGCACCTGCAGTA 62.083 66.667 13.81 0.00 42.21 2.74
3580 5047 5.664294 ATGATTTGAATTAGCCAACTGCA 57.336 34.783 0.00 0.00 44.83 4.41
3600 5099 6.515272 AACCAGGTGAAAACAGCTTATATG 57.485 37.500 0.00 0.00 0.00 1.78
3883 5385 0.806241 TGCTTTATTTCGGGGCGTTC 59.194 50.000 0.00 0.00 0.00 3.95
4062 5565 4.247380 GATGCAGAGGCCGGGGAG 62.247 72.222 2.18 0.00 40.13 4.30
4064 5567 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
4065 5568 3.035173 TTCTGATGCAGAGGCCGGG 62.035 63.158 2.18 0.00 41.75 5.73
4066 5569 1.817099 GTTCTGATGCAGAGGCCGG 60.817 63.158 0.00 0.00 41.75 6.13
4067 5570 2.169789 CGTTCTGATGCAGAGGCCG 61.170 63.158 0.00 0.00 41.75 6.13
4068 5571 0.179062 ATCGTTCTGATGCAGAGGCC 60.179 55.000 0.00 0.00 41.75 5.19
4069 5572 3.376218 ATCGTTCTGATGCAGAGGC 57.624 52.632 0.00 0.00 41.75 4.70
4077 5580 1.502231 GCCGTATGCATCGTTCTGAT 58.498 50.000 0.19 0.00 40.77 2.90
4078 5581 0.529773 GGCCGTATGCATCGTTCTGA 60.530 55.000 0.19 0.00 43.89 3.27
4079 5582 0.809636 TGGCCGTATGCATCGTTCTG 60.810 55.000 0.19 0.00 43.89 3.02
4080 5583 0.810031 GTGGCCGTATGCATCGTTCT 60.810 55.000 0.19 0.00 43.89 3.01
4081 5584 1.087202 TGTGGCCGTATGCATCGTTC 61.087 55.000 0.19 2.49 43.89 3.95
4082 5585 0.675208 TTGTGGCCGTATGCATCGTT 60.675 50.000 0.19 0.00 43.89 3.85
4083 5586 1.078778 TTGTGGCCGTATGCATCGT 60.079 52.632 0.19 0.00 43.89 3.73
4084 5587 1.351707 GTTGTGGCCGTATGCATCG 59.648 57.895 0.19 7.03 43.89 3.84
4085 5588 1.024271 ATGTTGTGGCCGTATGCATC 58.976 50.000 0.19 0.00 43.89 3.91
4086 5589 2.221169 CTATGTTGTGGCCGTATGCAT 58.779 47.619 3.79 3.79 43.89 3.96
4087 5590 1.065782 ACTATGTTGTGGCCGTATGCA 60.066 47.619 0.00 0.00 43.89 3.96
4088 5591 1.330521 CACTATGTTGTGGCCGTATGC 59.669 52.381 0.00 0.00 40.16 3.14
4097 5600 2.679837 GGCATGTCTCCACTATGTTGTG 59.320 50.000 0.00 0.00 37.66 3.33
4098 5601 2.356125 GGGCATGTCTCCACTATGTTGT 60.356 50.000 0.00 0.00 0.00 3.32
4099 5602 2.292267 GGGCATGTCTCCACTATGTTG 58.708 52.381 0.00 0.00 0.00 3.33
4100 5603 1.915489 TGGGCATGTCTCCACTATGTT 59.085 47.619 0.00 0.00 0.00 2.71
4101 5604 1.583556 TGGGCATGTCTCCACTATGT 58.416 50.000 0.00 0.00 0.00 2.29
4129 5632 2.282745 GCAGGCTTGCCCTCTGTT 60.283 61.111 10.18 0.00 44.09 3.16
4209 5716 4.086706 ACCAACTCTTTGTACAGGAAGG 57.913 45.455 7.32 8.78 0.00 3.46
4276 5783 8.606830 AGAAAGTACTCTTATCATTCTTGGGTT 58.393 33.333 0.00 0.00 33.09 4.11
4300 5811 0.106419 AAGGGCAAAACCACCGAAGA 60.106 50.000 0.00 0.00 42.05 2.87
4309 5820 7.960738 GTCAAAAGAAAAAGTTAAGGGCAAAAC 59.039 33.333 0.00 0.00 0.00 2.43
4313 5824 5.344884 CGTCAAAAGAAAAAGTTAAGGGCA 58.655 37.500 0.00 0.00 0.00 5.36
4316 5827 6.139048 TCCCGTCAAAAGAAAAAGTTAAGG 57.861 37.500 0.00 0.00 0.00 2.69
4326 5837 5.134661 ACCAAATTACTCCCGTCAAAAGAA 58.865 37.500 0.00 0.00 0.00 2.52
4352 5863 2.773487 CCATCACGGTCAAACCAGTTA 58.227 47.619 0.00 0.00 38.47 2.24
4382 5893 3.242549 GCCGTTAGCAGTTAGGTTAGT 57.757 47.619 0.00 0.00 42.97 2.24
4487 5998 1.133199 TGGAAGGTCAAAGGCAATGGT 60.133 47.619 0.00 0.00 0.00 3.55
4488 5999 1.631405 TGGAAGGTCAAAGGCAATGG 58.369 50.000 0.00 0.00 0.00 3.16
4490 6001 3.094572 CAGATGGAAGGTCAAAGGCAAT 58.905 45.455 0.00 0.00 0.00 3.56
4612 6147 3.370061 AGTTTCGGTAATTGTTAGCTCGC 59.630 43.478 0.00 0.00 0.00 5.03
4694 6229 2.734591 GACCCTGACGTCTGCACA 59.265 61.111 17.92 0.00 0.00 4.57
4721 6256 1.917282 TCTGCCTTGCTCTCCTGCT 60.917 57.895 0.00 0.00 0.00 4.24
4722 6257 1.744741 GTCTGCCTTGCTCTCCTGC 60.745 63.158 0.00 0.00 0.00 4.85
4723 6258 1.078567 GGTCTGCCTTGCTCTCCTG 60.079 63.158 0.00 0.00 0.00 3.86
4724 6259 1.537397 TGGTCTGCCTTGCTCTCCT 60.537 57.895 0.00 0.00 35.27 3.69
4726 6261 1.078567 CCTGGTCTGCCTTGCTCTC 60.079 63.158 0.00 0.00 35.27 3.20
4727 6262 3.076092 CCTGGTCTGCCTTGCTCT 58.924 61.111 0.00 0.00 35.27 4.09
4730 6265 1.747325 TTTTGCCTGGTCTGCCTTGC 61.747 55.000 0.00 0.00 35.27 4.01
4731 6266 0.971386 ATTTTGCCTGGTCTGCCTTG 59.029 50.000 0.00 0.00 35.27 3.61
4733 6268 1.345415 CAAATTTTGCCTGGTCTGCCT 59.655 47.619 0.00 0.00 35.27 4.75
4849 6387 6.577427 GCAAAACAAAACGTTATCTCTGTAGG 59.423 38.462 0.00 0.00 36.59 3.18
4858 6396 4.867608 ACTTGCAGCAAAACAAAACGTTAT 59.132 33.333 9.65 0.00 36.59 1.89
4860 6398 3.063485 ACTTGCAGCAAAACAAAACGTT 58.937 36.364 9.65 0.00 40.50 3.99


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.