Multiple sequence alignment - TraesCS2B01G418300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G418300 chr2B 100.000 5617 0 0 1 5617 598975390 598969774 0.000000e+00 10373
1 TraesCS2B01G418300 chr2D 93.845 4728 193 54 141 4816 509756779 509752098 0.000000e+00 7029
2 TraesCS2B01G418300 chr2D 85.109 826 61 34 4835 5617 509752113 509751307 0.000000e+00 787
3 TraesCS2B01G418300 chr2A 92.159 4591 247 58 293 4809 653396512 653391961 0.000000e+00 6379
4 TraesCS2B01G418300 chr2A 84.486 535 60 16 5097 5617 653391385 653390860 1.810000e-139 507
5 TraesCS2B01G418300 chr2A 81.229 293 18 18 4840 5101 653391961 653391675 9.540000e-48 202
6 TraesCS2B01G418300 chr6B 84.337 249 29 5 5360 5599 624777422 624777669 9.410000e-58 235
7 TraesCS2B01G418300 chr1D 84.753 223 28 4 5360 5576 477288738 477288516 9.470000e-53 219
8 TraesCS2B01G418300 chr5D 82.917 240 34 7 5360 5592 526121985 526122224 5.700000e-50 209
9 TraesCS2B01G418300 chr5D 77.099 262 42 13 5348 5599 37896843 37896590 9.820000e-28 135
10 TraesCS2B01G418300 chr3D 82.449 245 33 7 5360 5596 395665673 395665915 7.380000e-49 206
11 TraesCS2B01G418300 chr5B 79.352 247 39 8 5361 5598 602259297 602259054 4.500000e-36 163
12 TraesCS2B01G418300 chr6A 78.423 241 40 9 5360 5592 597706764 597706528 4.530000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G418300 chr2B 598969774 598975390 5616 True 10373.000000 10373 100.000 1 5617 1 chr2B.!!$R1 5616
1 TraesCS2B01G418300 chr2D 509751307 509756779 5472 True 3908.000000 7029 89.477 141 5617 2 chr2D.!!$R1 5476
2 TraesCS2B01G418300 chr2A 653390860 653396512 5652 True 2362.666667 6379 85.958 293 5617 3 chr2A.!!$R1 5324

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
471 483 0.036010 ACTTTCCACTCCCATGCTCG 60.036 55.000 0.00 0.0 0.00 5.03 F
474 486 0.321564 TTCCACTCCCATGCTCGTTG 60.322 55.000 0.00 0.0 0.00 4.10 F
1367 1430 0.398381 TCCAAGGGCCAAAGCTGTTT 60.398 50.000 6.18 0.0 39.73 2.83 F
1820 1885 1.066143 AGTTCTAGTTGTGGCCATCCG 60.066 52.381 9.72 0.0 34.14 4.18 F
1937 2002 1.112315 ACCAAATCGCCAAGGCAACA 61.112 50.000 12.19 0.0 42.06 3.33 F
3384 3477 1.072648 TGTGCCCCACTACCAGTTAAC 59.927 52.381 0.00 0.0 35.11 2.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1820 1885 1.632046 TTCGCCCACTCGATTTTCGC 61.632 55.000 0.00 0.0 40.21 4.70 R
1925 1990 2.016318 TCATCTATTGTTGCCTTGGCG 58.984 47.619 7.18 0.0 0.00 5.69 R
2668 2751 1.167851 CGTGTTGAGGGTCGTAGGTA 58.832 55.000 0.00 0.0 0.00 3.08 R
2670 2753 1.445582 GCGTGTTGAGGGTCGTAGG 60.446 63.158 0.00 0.0 0.00 3.18 R
3826 3928 1.140312 AGTGAAGCAGGTTCTTGGGA 58.860 50.000 13.45 0.0 35.99 4.37 R
4825 4934 0.037590 ACATAACAGCTTCCCCGCAA 59.962 50.000 0.00 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.345991 GCGGTAGCCTGTCCAACA 59.654 61.111 0.00 0.00 37.42 3.33
26 27 1.078426 GCGGTAGCCTGTCCAACAT 60.078 57.895 0.00 0.00 37.42 2.71
27 28 0.676782 GCGGTAGCCTGTCCAACATT 60.677 55.000 0.00 0.00 37.42 2.71
28 29 1.406341 GCGGTAGCCTGTCCAACATTA 60.406 52.381 0.00 0.00 37.42 1.90
29 30 2.277084 CGGTAGCCTGTCCAACATTAC 58.723 52.381 0.00 0.00 0.00 1.89
30 31 2.093658 CGGTAGCCTGTCCAACATTACT 60.094 50.000 0.00 0.00 0.00 2.24
31 32 3.270877 GGTAGCCTGTCCAACATTACTG 58.729 50.000 0.00 0.00 0.00 2.74
32 33 3.307480 GGTAGCCTGTCCAACATTACTGT 60.307 47.826 0.00 0.00 37.12 3.55
33 34 4.081309 GGTAGCCTGTCCAACATTACTGTA 60.081 45.833 0.00 0.00 33.36 2.74
34 35 4.207891 AGCCTGTCCAACATTACTGTAG 57.792 45.455 0.00 0.00 33.36 2.74
35 36 3.583086 AGCCTGTCCAACATTACTGTAGT 59.417 43.478 0.00 0.00 33.36 2.73
36 37 3.684788 GCCTGTCCAACATTACTGTAGTG 59.315 47.826 8.57 8.57 33.36 2.74
37 38 3.684788 CCTGTCCAACATTACTGTAGTGC 59.315 47.826 9.88 0.00 33.36 4.40
38 39 4.563580 CCTGTCCAACATTACTGTAGTGCT 60.564 45.833 9.88 0.00 33.36 4.40
39 40 4.314961 TGTCCAACATTACTGTAGTGCTG 58.685 43.478 9.88 8.19 33.36 4.41
40 41 4.202315 TGTCCAACATTACTGTAGTGCTGT 60.202 41.667 9.88 0.00 33.36 4.40
41 42 4.389077 GTCCAACATTACTGTAGTGCTGTC 59.611 45.833 9.88 1.79 33.36 3.51
42 43 4.283467 TCCAACATTACTGTAGTGCTGTCT 59.717 41.667 9.88 0.00 33.36 3.41
43 44 4.389992 CCAACATTACTGTAGTGCTGTCTG 59.610 45.833 9.88 0.00 33.36 3.51
44 45 5.230182 CAACATTACTGTAGTGCTGTCTGA 58.770 41.667 9.88 0.00 33.36 3.27
45 46 4.810790 ACATTACTGTAGTGCTGTCTGAC 58.189 43.478 9.88 0.00 32.49 3.51
46 47 3.554259 TTACTGTAGTGCTGTCTGACG 57.446 47.619 2.98 0.00 0.00 4.35
47 48 0.598562 ACTGTAGTGCTGTCTGACGG 59.401 55.000 12.29 12.29 0.00 4.79
48 49 0.598562 CTGTAGTGCTGTCTGACGGT 59.401 55.000 17.36 1.31 0.00 4.83
49 50 1.810755 CTGTAGTGCTGTCTGACGGTA 59.189 52.381 17.36 10.81 0.00 4.02
50 51 1.810755 TGTAGTGCTGTCTGACGGTAG 59.189 52.381 17.36 4.06 0.00 3.18
51 52 1.811359 GTAGTGCTGTCTGACGGTAGT 59.189 52.381 17.32 17.32 0.00 2.73
52 53 1.329256 AGTGCTGTCTGACGGTAGTT 58.671 50.000 17.36 2.64 0.00 2.24
53 54 1.000163 AGTGCTGTCTGACGGTAGTTG 60.000 52.381 17.36 0.00 0.00 3.16
54 55 1.000607 GTGCTGTCTGACGGTAGTTGA 60.001 52.381 17.36 0.00 0.00 3.18
55 56 1.684450 TGCTGTCTGACGGTAGTTGAA 59.316 47.619 17.36 0.00 0.00 2.69
56 57 2.101750 TGCTGTCTGACGGTAGTTGAAA 59.898 45.455 17.36 0.00 0.00 2.69
57 58 2.731976 GCTGTCTGACGGTAGTTGAAAG 59.268 50.000 17.36 0.00 0.00 2.62
58 59 3.318017 CTGTCTGACGGTAGTTGAAAGG 58.682 50.000 8.49 0.00 0.00 3.11
59 60 2.036733 TGTCTGACGGTAGTTGAAAGGG 59.963 50.000 2.98 0.00 0.00 3.95
60 61 2.036862 GTCTGACGGTAGTTGAAAGGGT 59.963 50.000 0.00 0.00 0.00 4.34
61 62 2.298163 TCTGACGGTAGTTGAAAGGGTC 59.702 50.000 0.00 0.00 0.00 4.46
62 63 1.000060 TGACGGTAGTTGAAAGGGTCG 60.000 52.381 0.00 0.00 0.00 4.79
63 64 1.270550 GACGGTAGTTGAAAGGGTCGA 59.729 52.381 0.00 0.00 0.00 4.20
64 65 1.688197 ACGGTAGTTGAAAGGGTCGAA 59.312 47.619 0.00 0.00 0.00 3.71
65 66 2.301009 ACGGTAGTTGAAAGGGTCGAAT 59.699 45.455 0.00 0.00 0.00 3.34
66 67 2.928116 CGGTAGTTGAAAGGGTCGAATC 59.072 50.000 0.00 0.00 0.00 2.52
67 68 3.368116 CGGTAGTTGAAAGGGTCGAATCT 60.368 47.826 0.00 0.00 0.00 2.40
68 69 4.182339 GGTAGTTGAAAGGGTCGAATCTC 58.818 47.826 0.00 0.00 0.00 2.75
69 70 4.322499 GGTAGTTGAAAGGGTCGAATCTCA 60.322 45.833 0.00 0.00 0.00 3.27
70 71 4.351874 AGTTGAAAGGGTCGAATCTCAA 57.648 40.909 0.00 0.00 0.00 3.02
71 72 4.714632 AGTTGAAAGGGTCGAATCTCAAA 58.285 39.130 0.00 0.00 0.00 2.69
72 73 5.130350 AGTTGAAAGGGTCGAATCTCAAAA 58.870 37.500 0.00 0.00 0.00 2.44
73 74 5.770162 AGTTGAAAGGGTCGAATCTCAAAAT 59.230 36.000 0.00 0.00 0.00 1.82
74 75 6.940298 AGTTGAAAGGGTCGAATCTCAAAATA 59.060 34.615 0.00 0.00 0.00 1.40
75 76 6.737254 TGAAAGGGTCGAATCTCAAAATAC 57.263 37.500 0.00 0.00 0.00 1.89
76 77 6.472887 TGAAAGGGTCGAATCTCAAAATACT 58.527 36.000 0.00 0.00 0.00 2.12
77 78 6.940298 TGAAAGGGTCGAATCTCAAAATACTT 59.060 34.615 0.00 0.00 0.00 2.24
78 79 7.447238 TGAAAGGGTCGAATCTCAAAATACTTT 59.553 33.333 0.00 0.00 0.00 2.66
79 80 6.986904 AGGGTCGAATCTCAAAATACTTTC 57.013 37.500 0.00 0.00 0.00 2.62
80 81 5.581085 AGGGTCGAATCTCAAAATACTTTCG 59.419 40.000 0.00 0.00 37.79 3.46
81 82 5.220605 GGGTCGAATCTCAAAATACTTTCGG 60.221 44.000 0.00 0.00 37.24 4.30
82 83 5.256352 GTCGAATCTCAAAATACTTTCGGC 58.744 41.667 0.00 0.00 37.24 5.54
83 84 4.032445 TCGAATCTCAAAATACTTTCGGCG 59.968 41.667 0.00 0.00 37.24 6.46
84 85 4.588278 GAATCTCAAAATACTTTCGGCGG 58.412 43.478 7.21 0.00 0.00 6.13
85 86 2.352388 TCTCAAAATACTTTCGGCGGG 58.648 47.619 7.21 0.00 0.00 6.13
86 87 1.400494 CTCAAAATACTTTCGGCGGGG 59.600 52.381 7.21 0.00 0.00 5.73
87 88 0.454196 CAAAATACTTTCGGCGGGGG 59.546 55.000 7.21 0.00 0.00 5.40
88 89 0.038599 AAAATACTTTCGGCGGGGGT 59.961 50.000 7.21 5.93 0.00 4.95
89 90 0.393402 AAATACTTTCGGCGGGGGTC 60.393 55.000 7.21 0.00 0.00 4.46
90 91 1.555477 AATACTTTCGGCGGGGGTCA 61.555 55.000 7.21 0.00 0.00 4.02
91 92 1.968050 ATACTTTCGGCGGGGGTCAG 61.968 60.000 7.21 0.00 0.00 3.51
92 93 3.702048 CTTTCGGCGGGGGTCAGA 61.702 66.667 7.21 0.00 0.00 3.27
93 94 3.006728 TTTCGGCGGGGGTCAGAT 61.007 61.111 7.21 0.00 0.00 2.90
94 95 2.925162 CTTTCGGCGGGGGTCAGATC 62.925 65.000 7.21 0.00 0.00 2.75
99 100 3.081409 CGGGGGTCAGATCCGGTT 61.081 66.667 0.00 0.00 40.07 4.44
100 101 1.759299 CGGGGGTCAGATCCGGTTA 60.759 63.158 0.00 0.00 40.07 2.85
101 102 1.332144 CGGGGGTCAGATCCGGTTAA 61.332 60.000 0.00 0.00 40.07 2.01
102 103 0.913924 GGGGGTCAGATCCGGTTAAA 59.086 55.000 0.00 0.00 0.00 1.52
103 104 1.493446 GGGGGTCAGATCCGGTTAAAT 59.507 52.381 0.00 0.00 0.00 1.40
104 105 2.092049 GGGGGTCAGATCCGGTTAAATT 60.092 50.000 0.00 0.00 0.00 1.82
105 106 3.626475 GGGGGTCAGATCCGGTTAAATTT 60.626 47.826 0.00 0.00 0.00 1.82
106 107 4.385532 GGGGGTCAGATCCGGTTAAATTTA 60.386 45.833 0.00 0.00 0.00 1.40
107 108 4.577693 GGGGTCAGATCCGGTTAAATTTAC 59.422 45.833 0.00 0.00 0.00 2.01
108 109 4.271776 GGGTCAGATCCGGTTAAATTTACG 59.728 45.833 0.00 0.00 0.00 3.18
110 111 3.872771 TCAGATCCGGTTAAATTTACGGC 59.127 43.478 17.94 8.70 45.58 5.68
111 112 3.623960 CAGATCCGGTTAAATTTACGGCA 59.376 43.478 17.94 10.31 45.58 5.69
112 113 4.095185 CAGATCCGGTTAAATTTACGGCAA 59.905 41.667 17.94 6.71 45.58 4.52
113 114 4.701171 AGATCCGGTTAAATTTACGGCAAA 59.299 37.500 17.94 6.15 45.58 3.68
114 115 4.843220 TCCGGTTAAATTTACGGCAAAA 57.157 36.364 17.94 3.37 45.58 2.44
115 116 5.192327 TCCGGTTAAATTTACGGCAAAAA 57.808 34.783 17.94 3.08 45.58 1.94
116 117 5.221130 TCCGGTTAAATTTACGGCAAAAAG 58.779 37.500 17.94 0.00 45.58 2.27
117 118 4.983538 CCGGTTAAATTTACGGCAAAAAGT 59.016 37.500 12.64 0.00 39.85 2.66
118 119 5.117440 CCGGTTAAATTTACGGCAAAAAGTC 59.883 40.000 12.64 0.00 39.85 3.01
119 120 5.686397 CGGTTAAATTTACGGCAAAAAGTCA 59.314 36.000 0.00 0.00 0.00 3.41
120 121 6.198591 CGGTTAAATTTACGGCAAAAAGTCAA 59.801 34.615 0.00 0.00 0.00 3.18
121 122 7.254017 CGGTTAAATTTACGGCAAAAAGTCAAA 60.254 33.333 0.00 0.00 0.00 2.69
122 123 8.388853 GGTTAAATTTACGGCAAAAAGTCAAAA 58.611 29.630 0.00 0.00 0.00 2.44
123 124 9.201424 GTTAAATTTACGGCAAAAAGTCAAAAC 57.799 29.630 0.00 0.00 0.00 2.43
124 125 6.969828 AATTTACGGCAAAAAGTCAAAACA 57.030 29.167 0.00 0.00 0.00 2.83
125 126 5.765072 TTTACGGCAAAAAGTCAAAACAC 57.235 34.783 0.00 0.00 0.00 3.32
126 127 2.612604 ACGGCAAAAAGTCAAAACACC 58.387 42.857 0.00 0.00 0.00 4.16
127 128 2.028930 ACGGCAAAAAGTCAAAACACCA 60.029 40.909 0.00 0.00 0.00 4.17
128 129 2.996621 CGGCAAAAAGTCAAAACACCAA 59.003 40.909 0.00 0.00 0.00 3.67
129 130 3.433615 CGGCAAAAAGTCAAAACACCAAA 59.566 39.130 0.00 0.00 0.00 3.28
130 131 4.094146 CGGCAAAAAGTCAAAACACCAAAT 59.906 37.500 0.00 0.00 0.00 2.32
131 132 5.391416 CGGCAAAAAGTCAAAACACCAAATT 60.391 36.000 0.00 0.00 0.00 1.82
132 133 6.385843 GGCAAAAAGTCAAAACACCAAATTT 58.614 32.000 0.00 0.00 0.00 1.82
133 134 6.307558 GGCAAAAAGTCAAAACACCAAATTTG 59.692 34.615 11.40 11.40 37.77 2.32
170 171 2.743928 GTCACGCCTGCTTCTGGG 60.744 66.667 0.00 0.00 0.00 4.45
183 184 3.282157 CTGGGAATGATGGCCGCG 61.282 66.667 0.00 0.00 0.00 6.46
186 187 1.525077 GGGAATGATGGCCGCGTAA 60.525 57.895 4.92 0.00 0.00 3.18
187 188 0.889186 GGGAATGATGGCCGCGTAAT 60.889 55.000 4.92 0.00 0.00 1.89
254 256 3.003763 GTCCCCTCCCAGACGCTT 61.004 66.667 0.00 0.00 0.00 4.68
255 257 3.003173 TCCCCTCCCAGACGCTTG 61.003 66.667 0.00 0.00 0.00 4.01
343 348 4.796495 CCGGAGGCGAAAAGGGGG 62.796 72.222 0.00 0.00 46.14 5.40
381 386 4.816984 ACCGCCCGTCGATCCTCT 62.817 66.667 0.00 0.00 41.67 3.69
382 387 3.528370 CCGCCCGTCGATCCTCTT 61.528 66.667 0.00 0.00 41.67 2.85
383 388 2.494918 CGCCCGTCGATCCTCTTT 59.505 61.111 0.00 0.00 41.67 2.52
395 407 1.048601 TCCTCTTTTCACTCGGCAGT 58.951 50.000 0.00 0.00 0.00 4.40
412 424 4.088351 TCCCCCTCGCATCCTCCA 62.088 66.667 0.00 0.00 0.00 3.86
418 430 1.133976 CCCTCGCATCCTCCAAAATCT 60.134 52.381 0.00 0.00 0.00 2.40
447 459 0.886563 CGGTTCGTTCCTAGGTGAGT 59.113 55.000 9.08 0.00 0.00 3.41
448 460 1.135460 CGGTTCGTTCCTAGGTGAGTC 60.135 57.143 9.08 3.62 0.00 3.36
456 468 3.544698 TCCTAGGTGAGTCTCCACTTT 57.455 47.619 13.56 0.00 37.24 2.66
458 470 2.498078 CCTAGGTGAGTCTCCACTTTCC 59.502 54.545 13.56 0.00 37.24 3.13
459 471 2.103153 AGGTGAGTCTCCACTTTCCA 57.897 50.000 13.56 0.00 37.24 3.53
460 472 1.694696 AGGTGAGTCTCCACTTTCCAC 59.305 52.381 13.56 0.00 37.24 4.02
461 473 1.694696 GGTGAGTCTCCACTTTCCACT 59.305 52.381 6.36 0.00 37.24 4.00
463 475 1.971357 TGAGTCTCCACTTTCCACTCC 59.029 52.381 0.00 0.00 33.83 3.85
464 476 1.276705 GAGTCTCCACTTTCCACTCCC 59.723 57.143 0.00 0.00 30.63 4.30
465 477 1.056660 GTCTCCACTTTCCACTCCCA 58.943 55.000 0.00 0.00 0.00 4.37
466 478 1.630878 GTCTCCACTTTCCACTCCCAT 59.369 52.381 0.00 0.00 0.00 4.00
467 479 1.630369 TCTCCACTTTCCACTCCCATG 59.370 52.381 0.00 0.00 0.00 3.66
468 480 0.038166 TCCACTTTCCACTCCCATGC 59.962 55.000 0.00 0.00 0.00 4.06
469 481 0.038744 CCACTTTCCACTCCCATGCT 59.961 55.000 0.00 0.00 0.00 3.79
470 482 1.457346 CACTTTCCACTCCCATGCTC 58.543 55.000 0.00 0.00 0.00 4.26
471 483 0.036010 ACTTTCCACTCCCATGCTCG 60.036 55.000 0.00 0.00 0.00 5.03
472 484 0.036010 CTTTCCACTCCCATGCTCGT 60.036 55.000 0.00 0.00 0.00 4.18
473 485 0.400213 TTTCCACTCCCATGCTCGTT 59.600 50.000 0.00 0.00 0.00 3.85
474 486 0.321564 TTCCACTCCCATGCTCGTTG 60.322 55.000 0.00 0.00 0.00 4.10
475 487 1.003355 CCACTCCCATGCTCGTTGT 60.003 57.895 0.00 0.00 0.00 3.32
476 488 1.021390 CCACTCCCATGCTCGTTGTC 61.021 60.000 0.00 0.00 0.00 3.18
487 499 2.014093 CTCGTTGTCGCAGATTCGCC 62.014 60.000 0.00 0.00 40.67 5.54
554 576 2.110967 CAGGCGCTTGATCTGTGGG 61.111 63.158 15.39 0.00 0.00 4.61
555 577 3.512516 GGCGCTTGATCTGTGGGC 61.513 66.667 7.64 11.50 38.63 5.36
556 578 2.437359 GCGCTTGATCTGTGGGCT 60.437 61.111 0.00 0.00 36.83 5.19
557 579 2.467826 GCGCTTGATCTGTGGGCTC 61.468 63.158 0.00 0.00 36.83 4.70
568 590 4.414956 TGGGCTCGTGGGGGAGAT 62.415 66.667 0.00 0.00 36.08 2.75
576 598 1.187087 CGTGGGGGAGATATCCTAGC 58.813 60.000 6.30 0.00 0.00 3.42
657 716 3.253188 GTCTCTCGAGGATGGATTCAGAG 59.747 52.174 13.56 0.00 0.00 3.35
671 730 0.676184 TCAGAGTCACAGACACTGCC 59.324 55.000 16.39 0.00 45.85 4.85
679 738 0.839946 ACAGACACTGCCTTCCTGTT 59.160 50.000 0.00 0.00 34.79 3.16
684 743 2.024414 ACACTGCCTTCCTGTTGTTTC 58.976 47.619 0.00 0.00 0.00 2.78
685 744 2.023673 CACTGCCTTCCTGTTGTTTCA 58.976 47.619 0.00 0.00 0.00 2.69
687 746 3.068590 CACTGCCTTCCTGTTGTTTCATT 59.931 43.478 0.00 0.00 0.00 2.57
688 747 3.706086 ACTGCCTTCCTGTTGTTTCATTT 59.294 39.130 0.00 0.00 0.00 2.32
689 748 4.892934 ACTGCCTTCCTGTTGTTTCATTTA 59.107 37.500 0.00 0.00 0.00 1.40
693 752 6.719370 TGCCTTCCTGTTGTTTCATTTAGTAT 59.281 34.615 0.00 0.00 0.00 2.12
797 856 2.691011 GGGGTTTCACTTGCTGTAACAA 59.309 45.455 0.00 0.00 33.01 2.83
838 897 6.018098 CCTGAGATAATGTGATGTCTGAAAGC 60.018 42.308 0.00 0.00 0.00 3.51
859 918 6.560253 AGCACACTAGTAAATTCCTTGTTG 57.440 37.500 0.00 0.00 0.00 3.33
907 966 4.458989 GGGTCTGACAATAAGATGCAACAA 59.541 41.667 10.38 0.00 0.00 2.83
923 982 7.931948 AGATGCAACAATAAGTGGGTATAGTAC 59.068 37.037 0.00 0.00 0.00 2.73
988 1048 3.826729 GCAATGTTCTACCTGTTCCCTTT 59.173 43.478 0.00 0.00 0.00 3.11
1140 1200 4.818534 TGTTGATCTTGCACAAGTTCTC 57.181 40.909 17.76 12.81 37.78 2.87
1200 1260 1.293498 GGCTGTGTCCATCGTGTCT 59.707 57.895 0.00 0.00 0.00 3.41
1203 1263 1.605457 GCTGTGTCCATCGTGTCTTGA 60.605 52.381 0.00 0.00 0.00 3.02
1223 1283 0.931702 CCTGCGTGTTGTTGTCGTTA 59.068 50.000 0.00 0.00 0.00 3.18
1244 1307 7.985184 TCGTTACTCCTGTTATGCATTAGAAAT 59.015 33.333 3.54 0.00 0.00 2.17
1256 1319 7.731882 ATGCATTAGAAATCTCAGTCAGATG 57.268 36.000 0.00 0.00 41.47 2.90
1367 1430 0.398381 TCCAAGGGCCAAAGCTGTTT 60.398 50.000 6.18 0.00 39.73 2.83
1369 1432 1.901833 CCAAGGGCCAAAGCTGTTTAT 59.098 47.619 6.18 0.00 39.73 1.40
1408 1471 6.266558 AGCTTGACCAGGTCTAGTAATATGAG 59.733 42.308 26.17 5.17 37.63 2.90
1409 1472 6.041069 GCTTGACCAGGTCTAGTAATATGAGT 59.959 42.308 26.17 0.00 37.63 3.41
1410 1473 7.230913 GCTTGACCAGGTCTAGTAATATGAGTA 59.769 40.741 26.17 0.00 37.63 2.59
1411 1474 9.303116 CTTGACCAGGTCTAGTAATATGAGTAT 57.697 37.037 20.82 0.00 32.46 2.12
1538 1602 5.164061 GCCAAAGCTTTTCATGACATTTACG 60.164 40.000 9.53 0.00 35.50 3.18
1648 1713 9.616156 TTAAAGTGTTTAGGCGGAATTGATATA 57.384 29.630 0.00 0.00 0.00 0.86
1820 1885 1.066143 AGTTCTAGTTGTGGCCATCCG 60.066 52.381 9.72 0.00 34.14 4.18
1849 1914 2.739913 CGAGTGGGCGAAGATTAACAAA 59.260 45.455 0.00 0.00 0.00 2.83
1855 1920 2.095415 GGCGAAGATTAACAAAAGGCGT 60.095 45.455 0.00 0.00 0.00 5.68
1930 1995 1.764422 TGGAGGACCAAATCGCCAA 59.236 52.632 0.00 0.00 43.91 4.52
1937 2002 1.112315 ACCAAATCGCCAAGGCAACA 61.112 50.000 12.19 0.00 42.06 3.33
1994 2059 6.663953 AGTTGTCTGCTGGTACTCTTCTATAA 59.336 38.462 0.00 0.00 0.00 0.98
2016 2081 3.374058 ACTTGCAACTCAATATGGTACGC 59.626 43.478 0.00 0.00 33.57 4.42
2030 2095 3.903360 TGGTACGCCTTTTAAATGTTGC 58.097 40.909 0.00 0.00 35.27 4.17
2031 2096 3.247442 GGTACGCCTTTTAAATGTTGCC 58.753 45.455 0.00 0.00 0.00 4.52
2151 2218 5.801350 TTGATTCTACAGATTTGCTTCGG 57.199 39.130 0.00 0.00 0.00 4.30
2205 2272 1.821216 AGCCACCTTGTTATTCCACG 58.179 50.000 0.00 0.00 0.00 4.94
2224 2291 5.818857 TCCACGTAGGCTAAATTATTTGGTC 59.181 40.000 0.00 0.00 37.29 4.02
2249 2322 6.707608 CCGTTAAGTGGGTCCTAATTATAACC 59.292 42.308 7.55 7.55 0.00 2.85
2420 2494 8.306038 TCTTTTTGCTTTGTATATGCTTCACAT 58.694 29.630 0.00 0.00 43.18 3.21
2502 2576 5.984323 GGTGGCAATTTTCAAATTTGCATTT 59.016 32.000 24.13 3.06 36.52 2.32
2894 2978 8.640063 AATATCAGCATCTACAATGCCAAATA 57.360 30.769 6.40 3.55 45.59 1.40
2974 3058 8.812972 TGTAGATGCGGATATATTTTTCCTACT 58.187 33.333 0.00 0.00 0.00 2.57
3384 3477 1.072648 TGTGCCCCACTACCAGTTAAC 59.927 52.381 0.00 0.00 35.11 2.01
3537 3631 5.063438 TGTTTCGACATCTGTTAAGCTATGC 59.937 40.000 0.00 0.00 0.00 3.14
3810 3912 2.749076 GTCATGGACAGCTATGCACAAA 59.251 45.455 0.00 0.00 33.43 2.83
3825 3927 4.370049 TGCACAAATCACTCACCATTTTG 58.630 39.130 0.00 0.00 34.34 2.44
3826 3928 4.141981 TGCACAAATCACTCACCATTTTGT 60.142 37.500 0.00 0.00 40.18 2.83
3851 3953 4.394300 CCAAGAACCTGCTTCACTGATTAG 59.606 45.833 0.00 0.00 0.00 1.73
3921 4023 1.945394 GCCAGCATGTGATGTTCCTAG 59.055 52.381 0.00 0.00 0.00 3.02
3934 4036 4.246712 TGTTCCTAGGGTGGAGTACTAG 57.753 50.000 9.46 0.00 37.43 2.57
3947 4049 7.287235 GGGTGGAGTACTAGTTTCTATGTATGT 59.713 40.741 0.00 0.00 0.00 2.29
4187 4289 2.431454 TGATGCGTATTGCTTCCACAA 58.569 42.857 0.00 0.00 44.83 3.33
4239 4342 1.661112 GCGTGACCAGATTGCTACTTC 59.339 52.381 0.00 0.00 0.00 3.01
4258 4361 7.862873 GCTACTTCCCATATAATTGTTTCTTGC 59.137 37.037 0.00 0.00 0.00 4.01
4309 4412 4.246458 ACGTTAGCTCAGAATCCTTTGTC 58.754 43.478 0.00 0.00 0.00 3.18
4394 4497 6.603599 GGGAAGTTATGGCTAGAAATCTTGTT 59.396 38.462 0.00 0.00 0.00 2.83
4419 4522 8.327941 TGATATAGTTTAGAGCAAATGATGGC 57.672 34.615 0.00 0.00 0.00 4.40
4461 4564 8.103305 TCATCTAATTGTTAATGATAGGGGAGC 58.897 37.037 0.00 0.00 0.00 4.70
4464 4567 1.697432 TGTTAATGATAGGGGAGCGGG 59.303 52.381 0.00 0.00 0.00 6.13
4668 4771 5.291178 CCAATGTCAACATGCTTCAGAAAA 58.709 37.500 0.00 0.00 36.56 2.29
4669 4772 5.176223 CCAATGTCAACATGCTTCAGAAAAC 59.824 40.000 0.00 0.00 36.56 2.43
4670 4773 3.951306 TGTCAACATGCTTCAGAAAACG 58.049 40.909 0.00 0.00 0.00 3.60
4672 4775 4.142491 TGTCAACATGCTTCAGAAAACGTT 60.142 37.500 0.00 0.00 0.00 3.99
4673 4776 4.204978 GTCAACATGCTTCAGAAAACGTTG 59.795 41.667 0.00 0.00 35.08 4.10
4675 4778 2.053627 CATGCTTCAGAAAACGTTGCC 58.946 47.619 0.00 0.00 0.00 4.52
4676 4779 1.098869 TGCTTCAGAAAACGTTGCCA 58.901 45.000 0.00 0.00 0.00 4.92
4677 4780 1.202245 TGCTTCAGAAAACGTTGCCAC 60.202 47.619 0.00 0.00 0.00 5.01
4679 4782 2.479560 GCTTCAGAAAACGTTGCCACTT 60.480 45.455 0.00 0.00 0.00 3.16
4680 4783 3.242936 GCTTCAGAAAACGTTGCCACTTA 60.243 43.478 0.00 0.00 0.00 2.24
4681 4784 3.955771 TCAGAAAACGTTGCCACTTAC 57.044 42.857 0.00 0.00 0.00 2.34
4682 4785 2.285756 TCAGAAAACGTTGCCACTTACG 59.714 45.455 0.00 0.00 43.08 3.18
4703 4809 1.067250 GGCAGCGAAAAAGGCAACA 59.933 52.632 0.00 0.00 41.41 3.33
4807 4916 6.764085 TGTTGAGTTTAGCACTTTAGCTGTTA 59.236 34.615 0.00 0.00 46.11 2.41
4808 4917 7.444183 TGTTGAGTTTAGCACTTTAGCTGTTAT 59.556 33.333 0.00 0.00 46.11 1.89
4809 4918 7.364522 TGAGTTTAGCACTTTAGCTGTTATG 57.635 36.000 0.00 0.00 46.11 1.90
4810 4919 6.934645 TGAGTTTAGCACTTTAGCTGTTATGT 59.065 34.615 0.00 0.00 46.11 2.29
4811 4920 7.095229 TGAGTTTAGCACTTTAGCTGTTATGTG 60.095 37.037 0.00 1.97 46.11 3.21
4812 4921 6.934645 AGTTTAGCACTTTAGCTGTTATGTGA 59.065 34.615 0.00 0.00 46.11 3.58
4813 4922 7.607991 AGTTTAGCACTTTAGCTGTTATGTGAT 59.392 33.333 0.00 2.19 46.11 3.06
4814 4923 7.921786 TTAGCACTTTAGCTGTTATGTGATT 57.078 32.000 0.00 0.00 46.11 2.57
4815 4924 6.824305 AGCACTTTAGCTGTTATGTGATTT 57.176 33.333 0.00 0.00 44.66 2.17
4816 4925 7.219484 AGCACTTTAGCTGTTATGTGATTTT 57.781 32.000 0.00 0.00 44.66 1.82
4817 4926 7.661040 AGCACTTTAGCTGTTATGTGATTTTT 58.339 30.769 0.00 0.00 44.66 1.94
4839 4948 4.268720 TTTTTGCGGGGAAGCTGT 57.731 50.000 0.00 0.00 38.13 4.40
4840 4949 2.510664 TTTTTGCGGGGAAGCTGTT 58.489 47.368 0.00 0.00 38.13 3.16
4899 5014 0.323302 TTGGCGCCTCACTGTATTGA 59.677 50.000 29.70 0.00 0.00 2.57
4908 5023 5.451381 CGCCTCACTGTATTGAACCATACTA 60.451 44.000 0.00 0.00 0.00 1.82
4909 5024 5.753921 GCCTCACTGTATTGAACCATACTAC 59.246 44.000 0.00 0.00 0.00 2.73
4910 5025 6.407074 GCCTCACTGTATTGAACCATACTACT 60.407 42.308 0.00 0.00 0.00 2.57
4911 5026 6.980978 CCTCACTGTATTGAACCATACTACTG 59.019 42.308 0.00 0.00 0.00 2.74
4912 5027 7.363880 CCTCACTGTATTGAACCATACTACTGT 60.364 40.741 0.00 0.00 0.00 3.55
4913 5028 8.584063 TCACTGTATTGAACCATACTACTGTA 57.416 34.615 0.00 0.00 0.00 2.74
4978 5118 2.029828 GTGTAGTGGTGACCTCTGAGTG 60.030 54.545 15.95 0.00 0.00 3.51
5029 5171 0.176680 CTCTGATGGAACCGGACCTG 59.823 60.000 9.46 4.09 0.00 4.00
5109 5251 5.262009 TCTTCTTAGCTACTCAAGGCTACA 58.738 41.667 0.00 0.00 40.21 2.74
5112 5254 5.262009 TCTTAGCTACTCAAGGCTACAAGA 58.738 41.667 0.00 0.00 40.21 3.02
5125 5564 6.521527 AGGCTACAAGATAATCCTTCCATT 57.478 37.500 0.00 0.00 0.00 3.16
5126 5565 6.915786 AGGCTACAAGATAATCCTTCCATTT 58.084 36.000 0.00 0.00 0.00 2.32
5196 5635 5.037015 TGACGTTCACCGGAATAAAATTG 57.963 39.130 9.46 0.00 42.24 2.32
5220 5659 1.076332 CACGCAACAACCCTAGTAGC 58.924 55.000 0.00 0.00 0.00 3.58
5277 5716 7.698130 GCCACATAGTACAAAAATTCTAAGCTG 59.302 37.037 0.00 0.00 0.00 4.24
5284 5723 9.177608 AGTACAAAAATTCTAAGCTGATATGCA 57.822 29.630 0.00 0.00 34.99 3.96
5285 5724 9.226345 GTACAAAAATTCTAAGCTGATATGCAC 57.774 33.333 0.00 0.00 34.99 4.57
5286 5725 6.968904 ACAAAAATTCTAAGCTGATATGCACG 59.031 34.615 0.00 0.00 34.99 5.34
5288 5727 4.607293 ATTCTAAGCTGATATGCACGGA 57.393 40.909 0.00 0.00 34.99 4.69
5290 5729 4.607293 TCTAAGCTGATATGCACGGATT 57.393 40.909 0.00 0.00 34.99 3.01
5291 5730 5.722021 TCTAAGCTGATATGCACGGATTA 57.278 39.130 0.00 0.00 34.99 1.75
5350 5797 9.764363 TTTCCAGTTGATATGCATAGTAGTTAG 57.236 33.333 12.79 0.00 0.00 2.34
5403 5850 1.892819 CGTGACACTCTGGCCCTGAT 61.893 60.000 0.00 0.00 0.00 2.90
5419 5866 3.244976 CCTGATGTTTTTCGATGGCAAC 58.755 45.455 0.00 0.00 0.00 4.17
5421 5868 4.549458 CTGATGTTTTTCGATGGCAACTT 58.451 39.130 0.00 0.00 37.61 2.66
5428 5875 2.768253 TCGATGGCAACTTCAGTCAT 57.232 45.000 0.00 0.00 40.65 3.06
5433 5880 1.610038 TGGCAACTTCAGTCATGCAAG 59.390 47.619 6.08 0.00 40.51 4.01
5455 5902 3.375299 GGATAGCAAATCCAGTGACACAC 59.625 47.826 8.59 0.00 38.09 3.82
5456 5903 2.346766 AGCAAATCCAGTGACACACA 57.653 45.000 8.59 0.00 36.74 3.72
5457 5904 2.653726 AGCAAATCCAGTGACACACAA 58.346 42.857 8.59 0.00 36.74 3.33
5458 5905 2.620115 AGCAAATCCAGTGACACACAAG 59.380 45.455 8.59 0.00 36.74 3.16
5460 5907 3.181487 GCAAATCCAGTGACACACAAGTT 60.181 43.478 8.59 0.00 36.74 2.66
5462 5909 4.900635 AATCCAGTGACACACAAGTTTC 57.099 40.909 8.59 0.00 36.74 2.78
5464 5911 4.746535 TCCAGTGACACACAAGTTTCTA 57.253 40.909 8.59 0.00 36.74 2.10
5465 5912 5.290493 TCCAGTGACACACAAGTTTCTAT 57.710 39.130 8.59 0.00 36.74 1.98
5470 5917 8.402472 CCAGTGACACACAAGTTTCTATAAAAA 58.598 33.333 8.59 0.00 36.74 1.94
5492 5939 4.351131 AAACTGAAACACGGAAGTTGTC 57.649 40.909 0.00 0.00 46.40 3.18
5523 5970 3.963428 ACTAAAGTTGTCATCCTCGCT 57.037 42.857 0.00 0.00 0.00 4.93
5532 5979 6.407202 AGTTGTCATCCTCGCTTAACTAAAT 58.593 36.000 0.00 0.00 0.00 1.40
5538 5985 4.328536 TCCTCGCTTAACTAAATTTGCCA 58.671 39.130 0.00 0.00 0.00 4.92
5544 5991 5.797934 CGCTTAACTAAATTTGCCATCGAAA 59.202 36.000 0.00 0.00 0.00 3.46
5545 5992 6.306837 CGCTTAACTAAATTTGCCATCGAAAA 59.693 34.615 0.00 0.00 0.00 2.29
5546 5993 7.445040 GCTTAACTAAATTTGCCATCGAAAAC 58.555 34.615 0.00 0.00 0.00 2.43
5548 5995 9.191995 CTTAACTAAATTTGCCATCGAAAACTT 57.808 29.630 0.00 0.00 0.00 2.66
5549 5996 7.637709 AACTAAATTTGCCATCGAAAACTTC 57.362 32.000 0.00 0.00 0.00 3.01
5567 6014 0.251354 TCCAGAGTTGCCATCTGCTC 59.749 55.000 4.78 0.00 42.36 4.26
5574 6021 0.108186 TTGCCATCTGCTCGTACCTG 60.108 55.000 0.00 0.00 42.00 4.00
5576 6023 0.390860 GCCATCTGCTCGTACCTGAT 59.609 55.000 0.00 0.00 36.87 2.90
5580 6027 2.941453 TCTGCTCGTACCTGATGTTC 57.059 50.000 0.00 0.00 0.00 3.18
5592 6039 5.344743 ACCTGATGTTCGACACTTATCAT 57.655 39.130 0.00 0.00 0.00 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 0.676782 AATGTTGGACAGGCTACCGC 60.677 55.000 5.64 2.68 0.00 5.68
9 10 2.093658 AGTAATGTTGGACAGGCTACCG 60.094 50.000 5.64 0.00 0.00 4.02
10 11 3.270877 CAGTAATGTTGGACAGGCTACC 58.729 50.000 3.38 3.38 0.00 3.18
11 12 3.939066 ACAGTAATGTTGGACAGGCTAC 58.061 45.455 0.00 0.00 0.00 3.58
12 13 4.775780 ACTACAGTAATGTTGGACAGGCTA 59.224 41.667 0.00 0.00 0.00 3.93
13 14 3.583086 ACTACAGTAATGTTGGACAGGCT 59.417 43.478 0.00 0.00 0.00 4.58
14 15 3.684788 CACTACAGTAATGTTGGACAGGC 59.315 47.826 0.00 0.00 0.00 4.85
15 16 3.684788 GCACTACAGTAATGTTGGACAGG 59.315 47.826 0.00 0.00 0.00 4.00
16 17 4.389992 CAGCACTACAGTAATGTTGGACAG 59.610 45.833 0.00 0.00 0.00 3.51
17 18 4.202315 ACAGCACTACAGTAATGTTGGACA 60.202 41.667 10.19 0.00 0.00 4.02
18 19 4.315803 ACAGCACTACAGTAATGTTGGAC 58.684 43.478 10.19 0.00 0.00 4.02
19 20 4.283467 AGACAGCACTACAGTAATGTTGGA 59.717 41.667 10.19 0.00 0.00 3.53
20 21 4.389992 CAGACAGCACTACAGTAATGTTGG 59.610 45.833 10.19 0.00 0.00 3.77
21 22 5.119279 GTCAGACAGCACTACAGTAATGTTG 59.881 44.000 0.00 1.50 0.00 3.33
22 23 5.230942 GTCAGACAGCACTACAGTAATGTT 58.769 41.667 0.00 0.00 0.00 2.71
23 24 4.616143 CGTCAGACAGCACTACAGTAATGT 60.616 45.833 0.00 0.00 0.00 2.71
24 25 3.854240 CGTCAGACAGCACTACAGTAATG 59.146 47.826 0.41 0.00 0.00 1.90
25 26 3.119459 CCGTCAGACAGCACTACAGTAAT 60.119 47.826 0.41 0.00 0.00 1.89
26 27 2.228103 CCGTCAGACAGCACTACAGTAA 59.772 50.000 0.41 0.00 0.00 2.24
27 28 1.810755 CCGTCAGACAGCACTACAGTA 59.189 52.381 0.41 0.00 0.00 2.74
28 29 0.598562 CCGTCAGACAGCACTACAGT 59.401 55.000 0.41 0.00 0.00 3.55
29 30 0.598562 ACCGTCAGACAGCACTACAG 59.401 55.000 0.41 0.00 0.00 2.74
30 31 1.810755 CTACCGTCAGACAGCACTACA 59.189 52.381 0.41 0.00 0.00 2.74
31 32 1.811359 ACTACCGTCAGACAGCACTAC 59.189 52.381 0.41 0.00 0.00 2.73
32 33 2.195741 ACTACCGTCAGACAGCACTA 57.804 50.000 0.41 0.00 0.00 2.74
33 34 1.000163 CAACTACCGTCAGACAGCACT 60.000 52.381 0.41 0.00 0.00 4.40
34 35 1.000607 TCAACTACCGTCAGACAGCAC 60.001 52.381 0.41 0.00 0.00 4.40
35 36 1.324383 TCAACTACCGTCAGACAGCA 58.676 50.000 0.41 0.00 0.00 4.41
36 37 2.433868 TTCAACTACCGTCAGACAGC 57.566 50.000 0.41 0.00 0.00 4.40
37 38 3.318017 CCTTTCAACTACCGTCAGACAG 58.682 50.000 0.41 0.00 0.00 3.51
38 39 2.036733 CCCTTTCAACTACCGTCAGACA 59.963 50.000 0.41 0.00 0.00 3.41
39 40 2.036862 ACCCTTTCAACTACCGTCAGAC 59.963 50.000 0.00 0.00 0.00 3.51
40 41 2.298163 GACCCTTTCAACTACCGTCAGA 59.702 50.000 0.00 0.00 0.00 3.27
41 42 2.685100 GACCCTTTCAACTACCGTCAG 58.315 52.381 0.00 0.00 0.00 3.51
42 43 1.000060 CGACCCTTTCAACTACCGTCA 60.000 52.381 0.00 0.00 0.00 4.35
43 44 1.270550 TCGACCCTTTCAACTACCGTC 59.729 52.381 0.00 0.00 0.00 4.79
44 45 1.331214 TCGACCCTTTCAACTACCGT 58.669 50.000 0.00 0.00 0.00 4.83
45 46 2.443887 TTCGACCCTTTCAACTACCG 57.556 50.000 0.00 0.00 0.00 4.02
46 47 4.182339 GAGATTCGACCCTTTCAACTACC 58.818 47.826 0.00 0.00 0.00 3.18
47 48 4.817517 TGAGATTCGACCCTTTCAACTAC 58.182 43.478 0.00 0.00 0.00 2.73
48 49 5.477607 TTGAGATTCGACCCTTTCAACTA 57.522 39.130 0.00 0.00 0.00 2.24
49 50 4.351874 TTGAGATTCGACCCTTTCAACT 57.648 40.909 0.00 0.00 0.00 3.16
50 51 5.432885 TTTTGAGATTCGACCCTTTCAAC 57.567 39.130 0.00 0.00 0.00 3.18
51 52 6.940298 AGTATTTTGAGATTCGACCCTTTCAA 59.060 34.615 0.00 0.00 0.00 2.69
52 53 6.472887 AGTATTTTGAGATTCGACCCTTTCA 58.527 36.000 0.00 0.00 0.00 2.69
53 54 6.986904 AGTATTTTGAGATTCGACCCTTTC 57.013 37.500 0.00 0.00 0.00 2.62
54 55 7.360946 CGAAAGTATTTTGAGATTCGACCCTTT 60.361 37.037 0.00 0.00 42.15 3.11
55 56 6.092259 CGAAAGTATTTTGAGATTCGACCCTT 59.908 38.462 0.00 0.00 42.15 3.95
56 57 5.581085 CGAAAGTATTTTGAGATTCGACCCT 59.419 40.000 0.00 0.00 42.15 4.34
57 58 5.220605 CCGAAAGTATTTTGAGATTCGACCC 60.221 44.000 7.23 0.00 42.15 4.46
58 59 5.726963 GCCGAAAGTATTTTGAGATTCGACC 60.727 44.000 7.23 0.00 42.15 4.79
59 60 5.256352 GCCGAAAGTATTTTGAGATTCGAC 58.744 41.667 7.23 0.00 42.15 4.20
60 61 4.032445 CGCCGAAAGTATTTTGAGATTCGA 59.968 41.667 7.23 0.00 42.15 3.71
61 62 4.263800 CGCCGAAAGTATTTTGAGATTCG 58.736 43.478 0.00 0.00 42.15 3.34
62 63 4.495844 CCCGCCGAAAGTATTTTGAGATTC 60.496 45.833 0.00 0.00 42.15 2.52
63 64 3.377172 CCCGCCGAAAGTATTTTGAGATT 59.623 43.478 0.00 0.00 42.15 2.40
64 65 2.943033 CCCGCCGAAAGTATTTTGAGAT 59.057 45.455 0.00 0.00 42.15 2.75
65 66 2.352388 CCCGCCGAAAGTATTTTGAGA 58.648 47.619 0.00 0.00 42.15 3.27
66 67 1.400494 CCCCGCCGAAAGTATTTTGAG 59.600 52.381 0.00 0.00 42.15 3.02
67 68 1.455248 CCCCGCCGAAAGTATTTTGA 58.545 50.000 0.00 0.00 42.15 2.69
68 69 0.454196 CCCCCGCCGAAAGTATTTTG 59.546 55.000 0.00 0.00 39.27 2.44
69 70 0.038599 ACCCCCGCCGAAAGTATTTT 59.961 50.000 0.00 0.00 39.27 1.82
70 71 0.393402 GACCCCCGCCGAAAGTATTT 60.393 55.000 0.00 0.00 43.98 1.40
71 72 1.222661 GACCCCCGCCGAAAGTATT 59.777 57.895 0.00 0.00 0.00 1.89
72 73 1.968050 CTGACCCCCGCCGAAAGTAT 61.968 60.000 0.00 0.00 0.00 2.12
73 74 2.604079 TGACCCCCGCCGAAAGTA 60.604 61.111 0.00 0.00 0.00 2.24
74 75 4.016706 CTGACCCCCGCCGAAAGT 62.017 66.667 0.00 0.00 0.00 2.66
75 76 2.925162 GATCTGACCCCCGCCGAAAG 62.925 65.000 0.00 0.00 0.00 2.62
76 77 3.006728 ATCTGACCCCCGCCGAAA 61.007 61.111 0.00 0.00 0.00 3.46
77 78 3.467226 GATCTGACCCCCGCCGAA 61.467 66.667 0.00 0.00 0.00 4.30
82 83 1.332144 TTAACCGGATCTGACCCCCG 61.332 60.000 9.46 7.68 42.64 5.73
83 84 0.913924 TTTAACCGGATCTGACCCCC 59.086 55.000 9.46 0.00 0.00 5.40
84 85 3.292492 AATTTAACCGGATCTGACCCC 57.708 47.619 9.46 0.00 0.00 4.95
85 86 4.271776 CGTAAATTTAACCGGATCTGACCC 59.728 45.833 9.46 0.00 0.00 4.46
86 87 4.271776 CCGTAAATTTAACCGGATCTGACC 59.728 45.833 17.91 0.00 43.01 4.02
87 88 4.260497 GCCGTAAATTTAACCGGATCTGAC 60.260 45.833 23.99 7.60 43.01 3.51
88 89 3.872771 GCCGTAAATTTAACCGGATCTGA 59.127 43.478 23.99 0.00 43.01 3.27
89 90 3.623960 TGCCGTAAATTTAACCGGATCTG 59.376 43.478 23.99 0.00 43.01 2.90
90 91 3.876341 TGCCGTAAATTTAACCGGATCT 58.124 40.909 23.99 0.00 43.01 2.75
91 92 4.619437 TTGCCGTAAATTTAACCGGATC 57.381 40.909 23.99 12.16 43.01 3.36
92 93 5.388408 TTTTGCCGTAAATTTAACCGGAT 57.612 34.783 23.99 0.00 43.01 4.18
93 94 4.843220 TTTTGCCGTAAATTTAACCGGA 57.157 36.364 23.99 11.19 43.01 5.14
94 95 4.983538 ACTTTTTGCCGTAAATTTAACCGG 59.016 37.500 18.28 18.28 43.22 5.28
95 96 5.686397 TGACTTTTTGCCGTAAATTTAACCG 59.314 36.000 0.00 0.45 0.00 4.44
96 97 7.466193 TTGACTTTTTGCCGTAAATTTAACC 57.534 32.000 0.00 0.00 0.00 2.85
97 98 9.201424 GTTTTGACTTTTTGCCGTAAATTTAAC 57.799 29.630 0.00 0.00 0.00 2.01
98 99 8.932791 TGTTTTGACTTTTTGCCGTAAATTTAA 58.067 25.926 0.00 0.00 0.00 1.52
99 100 8.381387 GTGTTTTGACTTTTTGCCGTAAATTTA 58.619 29.630 0.00 0.00 0.00 1.40
100 101 7.237871 GTGTTTTGACTTTTTGCCGTAAATTT 58.762 30.769 0.00 0.00 0.00 1.82
101 102 6.183360 GGTGTTTTGACTTTTTGCCGTAAATT 60.183 34.615 0.00 0.00 0.00 1.82
102 103 5.292345 GGTGTTTTGACTTTTTGCCGTAAAT 59.708 36.000 0.00 0.00 0.00 1.40
103 104 4.626172 GGTGTTTTGACTTTTTGCCGTAAA 59.374 37.500 0.00 0.00 0.00 2.01
104 105 4.174762 GGTGTTTTGACTTTTTGCCGTAA 58.825 39.130 0.00 0.00 0.00 3.18
105 106 3.192844 TGGTGTTTTGACTTTTTGCCGTA 59.807 39.130 0.00 0.00 0.00 4.02
106 107 2.028930 TGGTGTTTTGACTTTTTGCCGT 60.029 40.909 0.00 0.00 0.00 5.68
107 108 2.611518 TGGTGTTTTGACTTTTTGCCG 58.388 42.857 0.00 0.00 0.00 5.69
108 109 5.559427 ATTTGGTGTTTTGACTTTTTGCC 57.441 34.783 0.00 0.00 0.00 4.52
109 110 6.307558 CCAAATTTGGTGTTTTGACTTTTTGC 59.692 34.615 26.34 0.00 43.43 3.68
110 111 7.793907 CCAAATTTGGTGTTTTGACTTTTTG 57.206 32.000 26.34 0.00 43.43 2.44
151 152 3.114616 CAGAAGCAGGCGTGACGG 61.115 66.667 11.29 0.00 0.00 4.79
167 168 2.258748 TTACGCGGCCATCATTCCCA 62.259 55.000 12.47 0.00 0.00 4.37
170 171 2.774439 AAATTACGCGGCCATCATTC 57.226 45.000 12.47 0.00 0.00 2.67
249 251 1.901948 TGGTCTCTCGGTCAAGCGT 60.902 57.895 1.21 0.00 0.00 5.07
254 256 0.251608 TCATGGTGGTCTCTCGGTCA 60.252 55.000 0.00 0.00 0.00 4.02
255 257 1.115467 ATCATGGTGGTCTCTCGGTC 58.885 55.000 0.00 0.00 0.00 4.79
360 365 4.867599 GATCGACGGGCGGTCCAC 62.868 72.222 18.10 7.25 44.30 4.02
381 386 1.072505 GGGGACTGCCGAGTGAAAA 59.927 57.895 0.00 0.00 30.16 2.29
382 387 2.747686 GGGGACTGCCGAGTGAAA 59.252 61.111 0.00 0.00 30.16 2.69
383 388 3.319198 GGGGGACTGCCGAGTGAA 61.319 66.667 0.00 0.00 30.16 3.18
395 407 3.634157 TTGGAGGATGCGAGGGGGA 62.634 63.158 0.00 0.00 0.00 4.81
412 424 1.007607 ACCGGGGAATGGGAGATTTT 58.992 50.000 6.32 0.00 0.00 1.82
418 430 2.187896 GAACGAACCGGGGAATGGGA 62.188 60.000 6.32 0.00 0.00 4.37
447 459 1.630369 CATGGGAGTGGAAAGTGGAGA 59.370 52.381 0.00 0.00 0.00 3.71
448 460 1.952367 GCATGGGAGTGGAAAGTGGAG 60.952 57.143 0.00 0.00 0.00 3.86
456 468 1.296392 CAACGAGCATGGGAGTGGA 59.704 57.895 0.00 0.00 0.00 4.02
458 470 1.354337 CGACAACGAGCATGGGAGTG 61.354 60.000 0.00 0.00 42.66 3.51
459 471 1.079819 CGACAACGAGCATGGGAGT 60.080 57.895 0.00 0.00 42.66 3.85
460 472 2.456119 GCGACAACGAGCATGGGAG 61.456 63.158 0.00 0.00 42.66 4.30
461 473 2.434185 GCGACAACGAGCATGGGA 60.434 61.111 0.00 0.00 42.66 4.37
463 475 1.086067 ATCTGCGACAACGAGCATGG 61.086 55.000 0.00 0.00 42.95 3.66
464 476 0.723414 AATCTGCGACAACGAGCATG 59.277 50.000 0.00 0.00 42.95 4.06
465 477 1.002366 GAATCTGCGACAACGAGCAT 58.998 50.000 0.00 0.00 42.95 3.79
466 478 1.344226 CGAATCTGCGACAACGAGCA 61.344 55.000 0.00 0.00 42.66 4.26
467 479 1.341802 CGAATCTGCGACAACGAGC 59.658 57.895 0.00 0.00 42.66 5.03
468 480 1.341802 GCGAATCTGCGACAACGAG 59.658 57.895 0.00 0.00 42.66 4.18
469 481 2.092291 GGCGAATCTGCGACAACGA 61.092 57.895 0.00 0.00 39.62 3.85
470 482 2.395690 GGCGAATCTGCGACAACG 59.604 61.111 0.00 0.00 39.62 4.10
471 483 2.395690 CGGCGAATCTGCGACAAC 59.604 61.111 0.00 0.00 39.90 3.32
472 484 2.813474 CCGGCGAATCTGCGACAA 60.813 61.111 9.30 0.00 39.90 3.18
473 485 3.583276 AACCGGCGAATCTGCGACA 62.583 57.895 9.30 0.00 39.90 4.35
474 486 2.799540 GAACCGGCGAATCTGCGAC 61.800 63.158 9.30 0.00 35.51 5.19
475 487 2.508439 GAACCGGCGAATCTGCGA 60.508 61.111 9.30 0.00 35.06 5.10
476 488 2.509336 AGAACCGGCGAATCTGCG 60.509 61.111 9.30 0.00 35.06 5.18
487 499 3.052711 GCGAAACGAAACAGAACCG 57.947 52.632 0.00 0.00 0.00 4.44
527 539 2.032681 AAGCGCCTGACAACTCCC 59.967 61.111 2.29 0.00 0.00 4.30
528 540 0.674895 ATCAAGCGCCTGACAACTCC 60.675 55.000 11.63 0.00 0.00 3.85
530 542 0.322975 AGATCAAGCGCCTGACAACT 59.677 50.000 11.63 8.44 0.00 3.16
554 576 0.543174 AGGATATCTCCCCCACGAGC 60.543 60.000 2.05 0.00 43.21 5.03
555 577 2.729194 CTAGGATATCTCCCCCACGAG 58.271 57.143 2.05 0.00 43.21 4.18
556 578 1.272536 GCTAGGATATCTCCCCCACGA 60.273 57.143 2.05 0.00 43.21 4.35
557 579 1.187087 GCTAGGATATCTCCCCCACG 58.813 60.000 2.05 0.00 43.21 4.94
568 590 5.010933 CCTCGGATCTAAACAGCTAGGATA 58.989 45.833 0.00 0.00 0.00 2.59
576 598 4.692625 CCATAATGCCTCGGATCTAAACAG 59.307 45.833 0.00 0.00 0.00 3.16
657 716 0.394565 AGGAAGGCAGTGTCTGTGAC 59.605 55.000 0.00 0.00 33.43 3.67
679 738 9.577110 CCGACACTAGTAATACTAAATGAAACA 57.423 33.333 14.66 0.00 29.00 2.83
693 752 9.882996 CGTAATTAATATCACCGACACTAGTAA 57.117 33.333 0.00 0.00 0.00 2.24
838 897 7.925993 TGAACAACAAGGAATTTACTAGTGTG 58.074 34.615 5.39 0.00 0.00 3.82
859 918 6.417635 CACAATCATTGTTGTACCAACTGAAC 59.582 38.462 0.00 0.00 43.23 3.18
907 966 7.362747 GCTGCTAATCGTACTATACCCACTTAT 60.363 40.741 0.00 0.00 0.00 1.73
988 1048 2.355412 CCATGCTCATGAGAACCTGACA 60.355 50.000 27.04 12.71 41.20 3.58
1140 1200 0.804989 GGCACGAAACCTGATCTTGG 59.195 55.000 0.00 0.00 0.00 3.61
1200 1260 0.730265 GACAACAACACGCAGGTCAA 59.270 50.000 0.00 0.00 0.00 3.18
1203 1263 1.022451 AACGACAACAACACGCAGGT 61.022 50.000 0.00 0.00 0.00 4.00
1223 1283 7.568349 TGAGATTTCTAATGCATAACAGGAGT 58.432 34.615 0.00 0.00 0.00 3.85
1244 1307 7.142995 TCTAGGATAGAACATCTGACTGAGA 57.857 40.000 0.00 0.00 46.47 3.27
1408 1471 6.741811 CGCTAGAAATGGTCTACGTCATATAC 59.258 42.308 0.00 0.00 37.84 1.47
1409 1472 6.128090 CCGCTAGAAATGGTCTACGTCATATA 60.128 42.308 0.00 0.00 37.84 0.86
1410 1473 5.335740 CCGCTAGAAATGGTCTACGTCATAT 60.336 44.000 0.00 0.00 37.84 1.78
1411 1474 4.023450 CCGCTAGAAATGGTCTACGTCATA 60.023 45.833 0.00 0.00 37.84 2.15
1412 1475 3.243434 CCGCTAGAAATGGTCTACGTCAT 60.243 47.826 0.00 0.00 37.84 3.06
1413 1476 2.098607 CCGCTAGAAATGGTCTACGTCA 59.901 50.000 0.00 0.00 37.84 4.35
1414 1477 2.357009 TCCGCTAGAAATGGTCTACGTC 59.643 50.000 0.00 0.00 37.84 4.34
1415 1478 2.372264 TCCGCTAGAAATGGTCTACGT 58.628 47.619 0.00 0.00 37.84 3.57
1416 1479 3.004419 TGATCCGCTAGAAATGGTCTACG 59.996 47.826 0.00 0.00 37.84 3.51
1471 1535 9.537192 TCATGAAAGATGAATCATTTTTATGGC 57.463 29.630 20.82 9.96 34.12 4.40
1509 1573 2.299867 TCATGAAAAGCTTTGGCCCTTC 59.700 45.455 13.54 5.91 39.73 3.46
1538 1602 7.120789 AGCAATTAGTTTGTAATTTTGCAGC 57.879 32.000 8.05 0.00 37.65 5.25
1820 1885 1.632046 TTCGCCCACTCGATTTTCGC 61.632 55.000 0.00 0.00 40.21 4.70
1849 1914 4.332819 GCTGTGACTCATAATTTACGCCTT 59.667 41.667 0.00 0.00 0.00 4.35
1925 1990 2.016318 TCATCTATTGTTGCCTTGGCG 58.984 47.619 7.18 0.00 0.00 5.69
1928 1993 5.885230 TCTTGTCATCTATTGTTGCCTTG 57.115 39.130 0.00 0.00 0.00 3.61
1930 1995 5.809001 TCTTCTTGTCATCTATTGTTGCCT 58.191 37.500 0.00 0.00 0.00 4.75
1937 2002 9.447157 CCTTCTTTTCTCTTCTTGTCATCTATT 57.553 33.333 0.00 0.00 0.00 1.73
1994 2059 3.374058 GCGTACCATATTGAGTTGCAAGT 59.626 43.478 6.46 6.46 40.42 3.16
2030 2095 4.261614 GCTTTCTTCCTAAACAGGTGTTGG 60.262 45.833 0.00 0.00 38.44 3.77
2031 2096 4.261614 GGCTTTCTTCCTAAACAGGTGTTG 60.262 45.833 0.00 0.00 38.44 3.33
2205 2272 6.688637 AACGGACCAAATAATTTAGCCTAC 57.311 37.500 0.00 0.00 0.00 3.18
2224 2291 6.707608 GGTTATAATTAGGACCCACTTAACGG 59.292 42.308 8.26 0.00 0.00 4.44
2662 2745 4.529377 TGTTGAGGGTCGTAGGTATTCTTT 59.471 41.667 0.00 0.00 0.00 2.52
2663 2746 4.081807 GTGTTGAGGGTCGTAGGTATTCTT 60.082 45.833 0.00 0.00 0.00 2.52
2664 2747 3.446516 GTGTTGAGGGTCGTAGGTATTCT 59.553 47.826 0.00 0.00 0.00 2.40
2665 2748 3.733077 CGTGTTGAGGGTCGTAGGTATTC 60.733 52.174 0.00 0.00 0.00 1.75
2666 2749 2.165030 CGTGTTGAGGGTCGTAGGTATT 59.835 50.000 0.00 0.00 0.00 1.89
2667 2750 1.747355 CGTGTTGAGGGTCGTAGGTAT 59.253 52.381 0.00 0.00 0.00 2.73
2668 2751 1.167851 CGTGTTGAGGGTCGTAGGTA 58.832 55.000 0.00 0.00 0.00 3.08
2669 2752 1.962144 CGTGTTGAGGGTCGTAGGT 59.038 57.895 0.00 0.00 0.00 3.08
2670 2753 1.445582 GCGTGTTGAGGGTCGTAGG 60.446 63.158 0.00 0.00 0.00 3.18
3005 3089 5.481105 TGCAAGGCCAATTAATCTTTTCTG 58.519 37.500 5.01 0.00 0.00 3.02
3117 3202 3.125658 TCAGCACACAACATTGATGATCG 59.874 43.478 0.43 0.00 33.33 3.69
3496 3590 5.006261 TCGAAACAAGCGGATGTGTATTATG 59.994 40.000 0.00 0.00 32.81 1.90
3498 3592 4.327898 GTCGAAACAAGCGGATGTGTATTA 59.672 41.667 0.00 0.00 32.81 0.98
3511 3605 5.597813 AGCTTAACAGATGTCGAAACAAG 57.402 39.130 0.00 0.00 39.30 3.16
3537 3631 5.766222 GCATGTAGCATCCCATTTTTAGAG 58.234 41.667 0.00 0.00 44.79 2.43
3810 3912 3.524095 TGGGACAAAATGGTGAGTGAT 57.476 42.857 0.00 0.00 31.92 3.06
3825 3927 1.202818 AGTGAAGCAGGTTCTTGGGAC 60.203 52.381 13.45 3.14 35.99 4.46
3826 3928 1.140312 AGTGAAGCAGGTTCTTGGGA 58.860 50.000 13.45 0.00 35.99 4.37
3921 4023 7.287235 ACATACATAGAAACTAGTACTCCACCC 59.713 40.741 0.00 0.00 0.00 4.61
4164 4266 3.443329 TGTGGAAGCAATACGCATCAATT 59.557 39.130 0.00 0.00 46.13 2.32
4187 4289 6.936968 ACTACAACAATCCCTAGAAGTTCT 57.063 37.500 10.87 10.87 0.00 3.01
4282 4385 3.957497 AGGATTCTGAGCTAACGTCTGAT 59.043 43.478 0.00 0.00 0.00 2.90
4336 4439 3.074412 ACGGAGAATAAACTGCACTTGG 58.926 45.455 0.00 0.00 0.00 3.61
4394 4497 7.118245 CGCCATCATTTGCTCTAAACTATATCA 59.882 37.037 0.00 0.00 0.00 2.15
4438 4541 6.464222 CGCTCCCCTATCATTAACAATTAGA 58.536 40.000 0.00 0.00 0.00 2.10
4461 4564 1.086696 CAAGCATTACAGGACACCCG 58.913 55.000 0.00 0.00 37.58 5.28
4464 4567 2.154462 ACAGCAAGCATTACAGGACAC 58.846 47.619 0.00 0.00 0.00 3.67
4679 4782 1.231958 CCTTTTTCGCTGCCCACGTA 61.232 55.000 0.00 0.00 0.00 3.57
4680 4783 2.551912 CCTTTTTCGCTGCCCACGT 61.552 57.895 0.00 0.00 0.00 4.49
4681 4784 2.255252 CCTTTTTCGCTGCCCACG 59.745 61.111 0.00 0.00 0.00 4.94
4682 4785 2.049156 GCCTTTTTCGCTGCCCAC 60.049 61.111 0.00 0.00 0.00 4.61
4683 4786 2.130426 TTGCCTTTTTCGCTGCCCA 61.130 52.632 0.00 0.00 0.00 5.36
4688 4794 2.297033 ACATCATGTTGCCTTTTTCGCT 59.703 40.909 3.61 0.00 0.00 4.93
4735 4844 1.712081 CGATGCAACAGAAGCTCCG 59.288 57.895 0.00 0.00 0.00 4.63
4822 4931 1.693627 TAACAGCTTCCCCGCAAAAA 58.306 45.000 0.00 0.00 0.00 1.94
4823 4932 1.543802 CATAACAGCTTCCCCGCAAAA 59.456 47.619 0.00 0.00 0.00 2.44
4824 4933 1.173043 CATAACAGCTTCCCCGCAAA 58.827 50.000 0.00 0.00 0.00 3.68
4825 4934 0.037590 ACATAACAGCTTCCCCGCAA 59.962 50.000 0.00 0.00 0.00 4.85
4826 4935 0.676466 CACATAACAGCTTCCCCGCA 60.676 55.000 0.00 0.00 0.00 5.69
4827 4936 0.392461 TCACATAACAGCTTCCCCGC 60.392 55.000 0.00 0.00 0.00 6.13
4828 4937 1.066143 AGTCACATAACAGCTTCCCCG 60.066 52.381 0.00 0.00 0.00 5.73
4829 4938 2.749621 CAAGTCACATAACAGCTTCCCC 59.250 50.000 0.00 0.00 0.00 4.81
4830 4939 2.749621 CCAAGTCACATAACAGCTTCCC 59.250 50.000 0.00 0.00 0.00 3.97
4831 4940 3.674997 TCCAAGTCACATAACAGCTTCC 58.325 45.455 0.00 0.00 0.00 3.46
4832 4941 4.319177 ACTCCAAGTCACATAACAGCTTC 58.681 43.478 0.00 0.00 0.00 3.86
4833 4942 4.357918 ACTCCAAGTCACATAACAGCTT 57.642 40.909 0.00 0.00 0.00 3.74
4834 4943 5.483685 TTACTCCAAGTCACATAACAGCT 57.516 39.130 0.00 0.00 0.00 4.24
4835 4944 5.643777 ACATTACTCCAAGTCACATAACAGC 59.356 40.000 0.00 0.00 0.00 4.40
4836 4945 8.948631 ATACATTACTCCAAGTCACATAACAG 57.051 34.615 0.00 0.00 0.00 3.16
4837 4946 9.733556 AAATACATTACTCCAAGTCACATAACA 57.266 29.630 0.00 0.00 0.00 2.41
4839 4948 9.391006 GGAAATACATTACTCCAAGTCACATAA 57.609 33.333 0.00 0.00 0.00 1.90
4840 4949 7.990886 GGGAAATACATTACTCCAAGTCACATA 59.009 37.037 0.00 0.00 0.00 2.29
4899 5014 9.422681 ACTCACAATCTATACAGTAGTATGGTT 57.577 33.333 0.00 0.00 41.00 3.67
4908 5023 6.822170 TCACGACTACTCACAATCTATACAGT 59.178 38.462 0.00 0.00 0.00 3.55
4909 5024 7.127042 GTCACGACTACTCACAATCTATACAG 58.873 42.308 0.00 0.00 0.00 2.74
4910 5025 6.037940 GGTCACGACTACTCACAATCTATACA 59.962 42.308 0.00 0.00 0.00 2.29
4911 5026 6.260493 AGGTCACGACTACTCACAATCTATAC 59.740 42.308 0.00 0.00 0.00 1.47
4912 5027 6.354938 AGGTCACGACTACTCACAATCTATA 58.645 40.000 0.00 0.00 0.00 1.31
4913 5028 5.194432 AGGTCACGACTACTCACAATCTAT 58.806 41.667 0.00 0.00 0.00 1.98
4956 5071 1.546476 CTCAGAGGTCACCACTACACC 59.454 57.143 0.00 0.00 0.00 4.16
5029 5171 5.048013 CCAGAAAATCTTAACAACCCAGACC 60.048 44.000 0.00 0.00 0.00 3.85
5038 5180 9.965824 GAAGTCAAAATCCAGAAAATCTTAACA 57.034 29.630 0.00 0.00 0.00 2.41
5196 5635 1.440938 TAGGGTTGTTGCGTGTGTGC 61.441 55.000 0.00 0.00 0.00 4.57
5277 5716 5.682862 CAGCAAAAACTAATCCGTGCATATC 59.317 40.000 0.00 0.00 34.44 1.63
5280 5719 3.367292 CCAGCAAAAACTAATCCGTGCAT 60.367 43.478 0.00 0.00 34.44 3.96
5281 5720 2.030363 CCAGCAAAAACTAATCCGTGCA 60.030 45.455 0.00 0.00 34.44 4.57
5284 5723 5.885912 ACATATCCAGCAAAAACTAATCCGT 59.114 36.000 0.00 0.00 0.00 4.69
5285 5724 6.377327 ACATATCCAGCAAAAACTAATCCG 57.623 37.500 0.00 0.00 0.00 4.18
5286 5725 7.352739 CGTACATATCCAGCAAAAACTAATCC 58.647 38.462 0.00 0.00 0.00 3.01
5288 5727 7.051623 TCCGTACATATCCAGCAAAAACTAAT 58.948 34.615 0.00 0.00 0.00 1.73
5290 5729 5.979993 TCCGTACATATCCAGCAAAAACTA 58.020 37.500 0.00 0.00 0.00 2.24
5291 5730 4.839121 TCCGTACATATCCAGCAAAAACT 58.161 39.130 0.00 0.00 0.00 2.66
5328 5775 8.824159 AAGCTAACTACTATGCATATCAACTG 57.176 34.615 6.92 0.00 0.00 3.16
5350 5797 5.007626 TGTGGCACTTATCATTCGAATAAGC 59.992 40.000 19.83 7.10 32.66 3.09
5355 5802 2.670905 CGTGTGGCACTTATCATTCGAA 59.329 45.455 19.83 0.00 31.34 3.71
5356 5803 2.267426 CGTGTGGCACTTATCATTCGA 58.733 47.619 19.83 0.00 31.34 3.71
5357 5804 1.999735 ACGTGTGGCACTTATCATTCG 59.000 47.619 19.83 11.87 31.34 3.34
5388 5835 0.773644 AAACATCAGGGCCAGAGTGT 59.226 50.000 6.18 7.22 0.00 3.55
5403 5850 3.380004 ACTGAAGTTGCCATCGAAAAACA 59.620 39.130 0.00 0.00 0.00 2.83
5419 5866 3.538591 TGCTATCCTTGCATGACTGAAG 58.461 45.455 0.00 0.00 35.31 3.02
5421 5868 3.632643 TTGCTATCCTTGCATGACTGA 57.367 42.857 0.00 0.00 40.34 3.41
5428 5875 3.018856 CACTGGATTTGCTATCCTTGCA 58.981 45.455 16.21 0.00 38.95 4.08
5433 5880 3.375299 GTGTGTCACTGGATTTGCTATCC 59.625 47.826 4.27 10.45 38.66 2.59
5470 5917 4.216687 TGACAACTTCCGTGTTTCAGTTTT 59.783 37.500 0.00 0.00 0.00 2.43
5476 5923 2.290641 AGCATGACAACTTCCGTGTTTC 59.709 45.455 0.00 0.00 0.00 2.78
5479 5926 1.603802 CAAGCATGACAACTTCCGTGT 59.396 47.619 0.00 0.00 0.00 4.49
5482 5929 1.872952 TGACAAGCATGACAACTTCCG 59.127 47.619 0.00 0.00 0.00 4.30
5522 5969 8.742554 AGTTTTCGATGGCAAATTTAGTTAAG 57.257 30.769 0.00 0.00 0.00 1.85
5523 5970 9.187455 GAAGTTTTCGATGGCAAATTTAGTTAA 57.813 29.630 0.00 0.00 0.00 2.01
5532 5979 3.218453 TCTGGAAGTTTTCGATGGCAAA 58.782 40.909 0.00 0.00 33.76 3.68
5538 5985 2.814336 GGCAACTCTGGAAGTTTTCGAT 59.186 45.455 0.00 0.00 46.26 3.59
5545 5992 1.612726 GCAGATGGCAACTCTGGAAGT 60.613 52.381 17.35 0.00 43.97 3.01
5546 5993 1.093159 GCAGATGGCAACTCTGGAAG 58.907 55.000 17.35 0.00 43.97 3.46
5562 6009 1.132453 TCGAACATCAGGTACGAGCAG 59.868 52.381 0.00 0.00 0.00 4.24
5567 6014 2.631418 AGTGTCGAACATCAGGTACG 57.369 50.000 0.00 0.00 0.00 3.67
5574 6021 4.508124 GGACCATGATAAGTGTCGAACATC 59.492 45.833 0.00 0.00 0.00 3.06
5576 6023 3.513912 AGGACCATGATAAGTGTCGAACA 59.486 43.478 0.00 0.00 0.00 3.18
5580 6027 5.661458 AGTTAAGGACCATGATAAGTGTCG 58.339 41.667 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.