Multiple sequence alignment - TraesCS2B01G417900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G417900 chr2B 100.000 3885 0 0 1 3885 598559482 598563366 0.000000e+00 7175.0
1 TraesCS2B01G417900 chr2B 94.872 39 2 0 3800 3838 211621975 211622013 1.170000e-05 62.1
2 TraesCS2B01G417900 chr2D 95.546 2380 57 14 1118 3467 509229163 509231523 0.000000e+00 3762.0
3 TraesCS2B01G417900 chr2D 90.139 791 44 16 1 777 509227873 509228643 0.000000e+00 998.0
4 TraesCS2B01G417900 chr2D 94.702 151 8 0 3512 3662 509237464 509237614 6.490000e-58 235.0
5 TraesCS2B01G417900 chr2D 84.706 170 13 4 3724 3885 509237624 509237788 1.450000e-34 158.0
6 TraesCS2B01G417900 chr2A 92.612 2531 90 32 657 3108 652999504 653002016 0.000000e+00 3548.0
7 TraesCS2B01G417900 chr2A 89.492 571 30 16 94 651 652998625 652999178 0.000000e+00 695.0
8 TraesCS2B01G417900 chr2A 91.707 205 9 2 3094 3294 653002040 653002240 1.060000e-70 278.0
9 TraesCS2B01G417900 chr2A 93.478 46 3 0 3795 3840 146790150 146790105 6.970000e-08 69.4
10 TraesCS2B01G417900 chr6A 84.033 1453 232 0 1333 2785 476000065 476001517 0.000000e+00 1399.0
11 TraesCS2B01G417900 chr6B 83.700 1454 235 2 1333 2785 484101010 484099558 0.000000e+00 1371.0
12 TraesCS2B01G417900 chr6B 75.253 198 26 12 3665 3841 523952147 523952342 5.380000e-09 73.1
13 TraesCS2B01G417900 chr6D 83.482 1453 240 0 1333 2785 336366395 336367847 0.000000e+00 1354.0
14 TraesCS2B01G417900 chr1A 75.846 1300 268 36 1480 2750 339915537 339914255 1.530000e-173 619.0
15 TraesCS2B01G417900 chr1D 75.692 1300 272 35 1480 2751 260588604 260589887 9.230000e-171 610.0
16 TraesCS2B01G417900 chr5A 77.210 509 94 19 2154 2651 523816357 523816854 1.060000e-70 278.0
17 TraesCS2B01G417900 chr5A 77.157 197 24 8 3666 3841 643354522 643354326 1.150000e-15 95.3
18 TraesCS2B01G417900 chr5D 77.578 223 42 6 2500 2715 542592485 542592706 1.130000e-25 128.0
19 TraesCS2B01G417900 chr5B 77.155 232 45 6 2491 2715 684230631 684230861 1.130000e-25 128.0
20 TraesCS2B01G417900 chr5B 80.392 102 18 2 2127 2227 684228701 684228801 4.160000e-10 76.8
21 TraesCS2B01G417900 chr4A 77.679 224 40 8 2500 2715 626440221 626440000 1.130000e-25 128.0
22 TraesCS2B01G417900 chr1B 88.095 84 4 4 3759 3841 486853196 486853118 1.150000e-15 95.3
23 TraesCS2B01G417900 chr3D 94.000 50 3 0 3792 3841 286881276 286881227 4.160000e-10 76.8
24 TraesCS2B01G417900 chr3A 93.617 47 3 0 3792 3838 702519181 702519135 1.940000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G417900 chr2B 598559482 598563366 3884 False 7175 7175 100.000000 1 3885 1 chr2B.!!$F2 3884
1 TraesCS2B01G417900 chr2D 509227873 509231523 3650 False 2380 3762 92.842500 1 3467 2 chr2D.!!$F1 3466
2 TraesCS2B01G417900 chr2A 652998625 653002240 3615 False 1507 3548 91.270333 94 3294 3 chr2A.!!$F1 3200
3 TraesCS2B01G417900 chr6A 476000065 476001517 1452 False 1399 1399 84.033000 1333 2785 1 chr6A.!!$F1 1452
4 TraesCS2B01G417900 chr6B 484099558 484101010 1452 True 1371 1371 83.700000 1333 2785 1 chr6B.!!$R1 1452
5 TraesCS2B01G417900 chr6D 336366395 336367847 1452 False 1354 1354 83.482000 1333 2785 1 chr6D.!!$F1 1452
6 TraesCS2B01G417900 chr1A 339914255 339915537 1282 True 619 619 75.846000 1480 2750 1 chr1A.!!$R1 1270
7 TraesCS2B01G417900 chr1D 260588604 260589887 1283 False 610 610 75.692000 1480 2751 1 chr1D.!!$F1 1271


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
496 511 0.394352 CCATACCTGTGAACCCAGCC 60.394 60.0 0.0 0.0 0.00 4.85 F
1031 1404 0.258774 AGCTCCACCAACCAAACACT 59.741 50.0 0.0 0.0 0.00 3.55 F
1867 2404 0.253347 TCCTCCTCCAGGCATTCCTT 60.253 55.0 0.0 0.0 41.93 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1837 2374 1.305718 GAGGAGGAGGTCAGGCAGT 60.306 63.158 0.00 0.0 0.00 4.40 R
2854 3406 0.529337 CATTCGGCTGCTCGATGTCT 60.529 55.000 12.63 0.0 39.03 3.41 R
3588 4222 0.036732 AGGAGCAAATGTCGGAGCAA 59.963 50.000 0.00 0.0 0.00 3.91 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.106944 TCATGCCGCCGATACAGAGA 61.107 55.000 0.00 0.00 0.00 3.10
35 36 9.372369 CCGATACAGAGACTTTTCTTAGAAAAT 57.628 33.333 18.81 10.33 29.47 1.82
52 53 5.930135 AGAAAATATGCTGAATCGGTAGGT 58.070 37.500 0.00 0.00 0.00 3.08
66 68 3.896888 TCGGTAGGTCCAGTTGACTTTAA 59.103 43.478 0.00 0.00 43.89 1.52
67 69 4.344679 TCGGTAGGTCCAGTTGACTTTAAA 59.655 41.667 0.00 0.00 43.89 1.52
68 70 5.058490 CGGTAGGTCCAGTTGACTTTAAAA 58.942 41.667 0.00 0.00 43.89 1.52
69 71 5.704053 CGGTAGGTCCAGTTGACTTTAAAAT 59.296 40.000 0.00 0.00 43.89 1.82
70 72 6.128363 CGGTAGGTCCAGTTGACTTTAAAATC 60.128 42.308 0.00 0.00 43.89 2.17
129 131 1.656441 CCTGCAGTGGACTTTGTGC 59.344 57.895 13.81 0.00 36.42 4.57
133 135 1.405105 TGCAGTGGACTTTGTGCTTTC 59.595 47.619 0.00 0.00 36.84 2.62
145 147 7.105241 ACTTTGTGCTTTCTTTTCTCATCTT 57.895 32.000 0.00 0.00 0.00 2.40
146 148 8.225603 ACTTTGTGCTTTCTTTTCTCATCTTA 57.774 30.769 0.00 0.00 0.00 2.10
147 149 8.854117 ACTTTGTGCTTTCTTTTCTCATCTTAT 58.146 29.630 0.00 0.00 0.00 1.73
148 150 9.688592 CTTTGTGCTTTCTTTTCTCATCTTATT 57.311 29.630 0.00 0.00 0.00 1.40
211 213 7.987458 CCATTACAGCTCCAAAGAGATAAGTTA 59.013 37.037 0.00 0.00 43.39 2.24
253 255 1.428448 TGTATCAGCTCAACGCACAC 58.572 50.000 0.00 0.00 42.61 3.82
258 260 3.414700 GCTCAACGCACACCCGAG 61.415 66.667 0.00 0.00 38.92 4.63
263 265 3.865929 AACGCACACCCGAGAGCAG 62.866 63.158 0.00 0.00 0.00 4.24
311 313 7.365652 CCCTCCAGGTCTAGTAAAATAACACAT 60.366 40.741 0.00 0.00 0.00 3.21
312 314 8.047310 CCTCCAGGTCTAGTAAAATAACACATT 58.953 37.037 0.00 0.00 0.00 2.71
313 315 9.099454 CTCCAGGTCTAGTAAAATAACACATTC 57.901 37.037 0.00 0.00 0.00 2.67
323 333 8.325997 AGTAAAATAACACATTCGTATTCGCTC 58.674 33.333 0.00 0.00 36.96 5.03
333 343 4.282950 TCGTATTCGCTCGTCTACATTT 57.717 40.909 0.00 0.00 36.96 2.32
361 371 9.612620 CCTGATAGTTTTGTATGTTGAAAGAAC 57.387 33.333 0.00 0.00 0.00 3.01
365 375 3.907894 TTGTATGTTGAAAGAACCGGC 57.092 42.857 0.00 0.00 0.00 6.13
379 390 4.940463 AGAACCGGCTTTTAAAAGTTTCC 58.060 39.130 24.95 17.72 38.28 3.13
385 396 4.671964 CGGCTTTTAAAAGTTTCCGTACAC 59.328 41.667 25.26 10.21 38.28 2.90
443 454 2.311542 ACCAAAATCCTGTCCATGCCTA 59.688 45.455 0.00 0.00 0.00 3.93
446 457 3.737559 AAATCCTGTCCATGCCTACAA 57.262 42.857 0.00 0.00 0.00 2.41
464 475 2.556189 ACAAACATTCTAATGCACGGCA 59.444 40.909 2.60 1.01 44.86 5.69
496 511 0.394352 CCATACCTGTGAACCCAGCC 60.394 60.000 0.00 0.00 0.00 4.85
514 529 2.691526 AGCCTTGTTCATATGCCATGTG 59.308 45.455 0.00 0.00 0.00 3.21
523 538 6.093909 TGTTCATATGCCATGTGTTTCTAGTG 59.906 38.462 1.18 0.00 0.00 2.74
578 597 1.409064 TCCGATCAAGAATCCTGTCCG 59.591 52.381 0.00 0.00 0.00 4.79
717 1064 6.835819 ATGCTACTAGTGACTGTTACTGAA 57.164 37.500 14.72 0.00 0.00 3.02
738 1085 8.237267 ACTGAATTAGTTAAGGCAAAATTCTCG 58.763 33.333 0.00 0.00 35.67 4.04
739 1086 7.027161 TGAATTAGTTAAGGCAAAATTCTCGC 58.973 34.615 0.00 0.00 37.42 5.03
806 1160 2.608752 GGGAAAGTTGATGCTGTTGCTG 60.609 50.000 0.00 0.00 40.48 4.41
807 1161 2.608752 GGAAAGTTGATGCTGTTGCTGG 60.609 50.000 0.00 0.00 40.48 4.85
813 1167 2.518836 GATGCTGTTGCTGGACACGC 62.519 60.000 0.00 0.00 40.48 5.34
817 1171 4.030452 GTTGCTGGACACGCAGGC 62.030 66.667 0.00 0.00 38.80 4.85
825 1179 1.446272 GACACGCAGGCAGGAGTAC 60.446 63.158 0.00 0.00 0.00 2.73
875 1229 0.654160 GTAATTAACACGGGCGGCTC 59.346 55.000 9.56 0.00 0.00 4.70
876 1230 0.538118 TAATTAACACGGGCGGCTCT 59.462 50.000 9.56 0.00 0.00 4.09
877 1231 1.024579 AATTAACACGGGCGGCTCTG 61.025 55.000 9.56 6.91 0.00 3.35
878 1232 2.869503 ATTAACACGGGCGGCTCTGG 62.870 60.000 9.56 0.00 0.00 3.86
923 1278 1.337823 ACGACAAAACCATCCCGAGAG 60.338 52.381 0.00 0.00 0.00 3.20
928 1283 3.003480 CAAAACCATCCCGAGAGAGAAC 58.997 50.000 0.00 0.00 0.00 3.01
932 1287 1.407258 CCATCCCGAGAGAGAACTGTC 59.593 57.143 0.00 0.00 33.79 3.51
941 1296 5.926542 CCGAGAGAGAACTGTCAATTGTAAA 59.073 40.000 5.13 0.00 36.40 2.01
942 1297 6.128795 CCGAGAGAGAACTGTCAATTGTAAAC 60.129 42.308 5.13 0.00 36.40 2.01
944 1299 5.696724 AGAGAGAACTGTCAATTGTAAACGG 59.303 40.000 5.13 4.27 0.00 4.44
945 1300 4.213482 AGAGAACTGTCAATTGTAAACGGC 59.787 41.667 5.13 0.00 0.00 5.68
947 1302 3.619233 ACTGTCAATTGTAAACGGCAC 57.381 42.857 5.13 0.00 0.00 5.01
953 1326 0.696501 ATTGTAAACGGCACCCCTCT 59.303 50.000 0.00 0.00 0.00 3.69
955 1328 1.447314 GTAAACGGCACCCCTCTCG 60.447 63.158 0.00 0.00 0.00 4.04
974 1347 1.504647 GCCTCCGGCGCCTATAAAAC 61.505 60.000 26.68 3.80 39.62 2.43
975 1348 1.219522 CCTCCGGCGCCTATAAAACG 61.220 60.000 26.68 8.26 0.00 3.60
979 1352 4.989588 GCGCCTATAAAACGGCAC 57.010 55.556 0.00 0.00 46.62 5.01
981 1354 1.639534 CGCCTATAAAACGGCACCG 59.360 57.895 7.71 7.71 46.62 4.94
982 1355 1.354155 GCCTATAAAACGGCACCGC 59.646 57.895 9.43 0.00 45.59 5.68
1027 1400 0.823356 GCAGAGCTCCACCAACCAAA 60.823 55.000 10.93 0.00 0.00 3.28
1031 1404 0.258774 AGCTCCACCAACCAAACACT 59.741 50.000 0.00 0.00 0.00 3.55
1043 1416 2.212110 AAACACTACCCGCCTCCGT 61.212 57.895 0.00 0.00 0.00 4.69
1084 1461 0.261696 GCTCCCCCTCTCTCTCTCTT 59.738 60.000 0.00 0.00 0.00 2.85
1090 1467 1.106944 CCTCTCTCTCTCTTCCCCGC 61.107 65.000 0.00 0.00 0.00 6.13
1091 1468 0.395036 CTCTCTCTCTCTTCCCCGCA 60.395 60.000 0.00 0.00 0.00 5.69
1092 1469 0.395036 TCTCTCTCTCTTCCCCGCAG 60.395 60.000 0.00 0.00 0.00 5.18
1093 1470 2.015227 CTCTCTCTCTTCCCCGCAGC 62.015 65.000 0.00 0.00 0.00 5.25
1094 1471 3.077556 TCTCTCTTCCCCGCAGCC 61.078 66.667 0.00 0.00 0.00 4.85
1095 1472 3.080121 CTCTCTTCCCCGCAGCCT 61.080 66.667 0.00 0.00 0.00 4.58
1096 1473 3.077556 TCTCTTCCCCGCAGCCTC 61.078 66.667 0.00 0.00 0.00 4.70
1097 1474 4.168291 CTCTTCCCCGCAGCCTCC 62.168 72.222 0.00 0.00 0.00 4.30
1173 1699 3.861263 CGGCGCCGTAAAAGCTCC 61.861 66.667 39.71 0.53 34.35 4.70
1181 1707 0.788391 CGTAAAAGCTCCGCGAAACT 59.212 50.000 8.23 0.00 0.00 2.66
1213 1750 2.347490 GCCGCTCCTCTGTTTCCA 59.653 61.111 0.00 0.00 0.00 3.53
1282 1819 3.661648 ATCACCGCCCCCTTGCTT 61.662 61.111 0.00 0.00 0.00 3.91
1402 1939 1.954382 GAAGCCTGGTCCGTTTCTTTT 59.046 47.619 0.00 0.00 0.00 2.27
1837 2374 2.501723 GGAGACCTACATTCTTGCCTCA 59.498 50.000 0.00 0.00 0.00 3.86
1867 2404 0.253347 TCCTCCTCCAGGCATTCCTT 60.253 55.000 0.00 0.00 41.93 3.36
2681 3230 2.526873 ACTTCGAGGGCCTGTGGT 60.527 61.111 12.95 0.89 0.00 4.16
2854 3406 1.872234 GCTGCTTATCGACGACGCA 60.872 57.895 14.86 14.86 39.58 5.24
2865 3417 2.202479 CGACGCAGACATCGAGCA 60.202 61.111 0.00 0.00 40.86 4.26
2872 3424 0.529337 CAGACATCGAGCAGCCGAAT 60.529 55.000 9.60 2.52 42.22 3.34
2892 3444 4.937201 ATGATCGGTGTTGATAGCTACA 57.063 40.909 0.00 0.00 0.00 2.74
2893 3445 4.041740 TGATCGGTGTTGATAGCTACAC 57.958 45.455 15.88 15.88 45.81 2.90
3116 3741 8.865793 ACGTAGTGGTACTTGTTCGAAGGAAC 62.866 46.154 0.00 0.19 46.74 3.62
3162 3787 4.196965 GGAACAATCCGTCCGTCC 57.803 61.111 0.00 0.00 35.59 4.79
3290 3923 1.228657 AAAGTCGCGTGGCTTCCTTC 61.229 55.000 17.31 0.00 0.00 3.46
3297 3930 0.526524 CGTGGCTTCCTTCGCTAGAG 60.527 60.000 0.00 0.00 0.00 2.43
3303 3936 0.753262 TTCCTTCGCTAGAGCATCCC 59.247 55.000 1.89 0.00 42.21 3.85
3419 4053 8.991810 GTTATATACCACGTGATTTGTTTTTCG 58.008 33.333 19.30 0.00 0.00 3.46
3420 4054 2.456010 ACCACGTGATTTGTTTTTCGC 58.544 42.857 19.30 0.00 0.00 4.70
3421 4055 2.098443 ACCACGTGATTTGTTTTTCGCT 59.902 40.909 19.30 0.00 0.00 4.93
3422 4056 3.312973 ACCACGTGATTTGTTTTTCGCTA 59.687 39.130 19.30 0.00 0.00 4.26
3425 4059 5.230306 CCACGTGATTTGTTTTTCGCTAAAA 59.770 36.000 19.30 0.00 33.41 1.52
3459 4093 2.288213 TGGAGTAAGCGACTGTTGTCTG 60.288 50.000 0.00 0.00 39.06 3.51
3467 4101 2.408704 GCGACTGTTGTCTGACATGTAC 59.591 50.000 11.86 7.70 40.86 2.90
3468 4102 2.656897 CGACTGTTGTCTGACATGTACG 59.343 50.000 11.86 10.16 40.86 3.67
3469 4103 2.987149 GACTGTTGTCTGACATGTACGG 59.013 50.000 11.86 13.83 39.94 4.02
3470 4104 2.626266 ACTGTTGTCTGACATGTACGGA 59.374 45.455 20.92 6.41 0.00 4.69
3471 4105 3.245797 CTGTTGTCTGACATGTACGGAG 58.754 50.000 11.86 0.00 0.00 4.63
3472 4106 7.504203 GACTGTTGTCTGACATGTACGGAGT 62.504 48.000 20.92 12.75 41.74 3.85
3473 4107 3.822167 TGTTGTCTGACATGTACGGAGTA 59.178 43.478 11.86 0.00 45.11 2.59
3474 4108 9.434595 GACTGTTGTCTGACATGTACGGAGTAT 62.435 44.444 20.92 4.42 41.81 2.12
3510 4144 3.464111 TTTTGCGGGGTAGAGTATAGC 57.536 47.619 0.00 0.00 0.00 2.97
3511 4145 2.076207 TTGCGGGGTAGAGTATAGCA 57.924 50.000 0.00 0.00 0.00 3.49
3512 4146 2.076207 TGCGGGGTAGAGTATAGCAA 57.924 50.000 0.00 0.00 0.00 3.91
3513 4147 1.961394 TGCGGGGTAGAGTATAGCAAG 59.039 52.381 0.00 0.00 0.00 4.01
3514 4148 2.236766 GCGGGGTAGAGTATAGCAAGA 58.763 52.381 0.00 0.00 0.00 3.02
3515 4149 2.826725 GCGGGGTAGAGTATAGCAAGAT 59.173 50.000 0.00 0.00 0.00 2.40
3516 4150 3.119424 GCGGGGTAGAGTATAGCAAGATC 60.119 52.174 0.00 0.00 0.00 2.75
3517 4151 4.337145 CGGGGTAGAGTATAGCAAGATCT 58.663 47.826 0.00 0.00 0.00 2.75
3518 4152 5.498393 CGGGGTAGAGTATAGCAAGATCTA 58.502 45.833 0.00 0.00 0.00 1.98
3519 4153 5.944599 CGGGGTAGAGTATAGCAAGATCTAA 59.055 44.000 0.00 0.00 0.00 2.10
3520 4154 6.433404 CGGGGTAGAGTATAGCAAGATCTAAA 59.567 42.308 0.00 0.00 0.00 1.85
3521 4155 7.362229 CGGGGTAGAGTATAGCAAGATCTAAAG 60.362 44.444 0.00 0.00 0.00 1.85
3522 4156 7.670559 GGGGTAGAGTATAGCAAGATCTAAAGA 59.329 40.741 0.00 0.00 0.00 2.52
3523 4157 8.736244 GGGTAGAGTATAGCAAGATCTAAAGAG 58.264 40.741 0.00 0.00 0.00 2.85
3524 4158 9.292195 GGTAGAGTATAGCAAGATCTAAAGAGT 57.708 37.037 0.00 0.00 0.00 3.24
3526 4160 8.988546 AGAGTATAGCAAGATCTAAAGAGTGA 57.011 34.615 0.00 0.00 0.00 3.41
3527 4161 9.586732 AGAGTATAGCAAGATCTAAAGAGTGAT 57.413 33.333 0.00 0.00 0.00 3.06
3541 4175 9.998106 TCTAAAGAGTGATTTATTACCCTATGC 57.002 33.333 0.00 0.00 0.00 3.14
3542 4176 9.778741 CTAAAGAGTGATTTATTACCCTATGCA 57.221 33.333 0.00 0.00 0.00 3.96
3546 4180 9.726438 AGAGTGATTTATTACCCTATGCATAAC 57.274 33.333 8.00 0.00 0.00 1.89
3547 4181 8.863872 AGTGATTTATTACCCTATGCATAACC 57.136 34.615 8.00 0.00 0.00 2.85
3548 4182 7.606456 AGTGATTTATTACCCTATGCATAACCG 59.394 37.037 8.00 0.63 0.00 4.44
3549 4183 7.389607 GTGATTTATTACCCTATGCATAACCGT 59.610 37.037 8.00 6.55 0.00 4.83
3550 4184 7.604927 TGATTTATTACCCTATGCATAACCGTC 59.395 37.037 8.00 0.00 0.00 4.79
3551 4185 4.967084 ATTACCCTATGCATAACCGTCA 57.033 40.909 8.00 0.00 0.00 4.35
3552 4186 2.910688 ACCCTATGCATAACCGTCAG 57.089 50.000 8.00 0.00 0.00 3.51
3553 4187 1.416401 ACCCTATGCATAACCGTCAGG 59.584 52.381 8.00 5.17 45.13 3.86
3554 4188 1.691976 CCCTATGCATAACCGTCAGGA 59.308 52.381 8.00 0.00 41.02 3.86
3555 4189 2.303022 CCCTATGCATAACCGTCAGGAT 59.697 50.000 8.00 0.00 41.02 3.24
3556 4190 3.513912 CCCTATGCATAACCGTCAGGATA 59.486 47.826 8.00 0.00 41.02 2.59
3557 4191 4.382040 CCCTATGCATAACCGTCAGGATAG 60.382 50.000 8.00 0.00 41.02 2.08
3558 4192 4.462834 CCTATGCATAACCGTCAGGATAGA 59.537 45.833 8.00 0.00 41.02 1.98
3559 4193 4.527509 ATGCATAACCGTCAGGATAGAG 57.472 45.455 0.00 0.00 41.02 2.43
3560 4194 3.296854 TGCATAACCGTCAGGATAGAGT 58.703 45.455 0.00 0.00 41.02 3.24
3561 4195 3.704566 TGCATAACCGTCAGGATAGAGTT 59.295 43.478 0.00 0.00 41.02 3.01
3562 4196 4.891168 TGCATAACCGTCAGGATAGAGTTA 59.109 41.667 0.00 0.00 41.02 2.24
3563 4197 5.361571 TGCATAACCGTCAGGATAGAGTTAA 59.638 40.000 0.00 0.00 41.02 2.01
3564 4198 5.921408 GCATAACCGTCAGGATAGAGTTAAG 59.079 44.000 0.00 0.00 41.02 1.85
3565 4199 6.238953 GCATAACCGTCAGGATAGAGTTAAGA 60.239 42.308 0.00 0.00 41.02 2.10
3566 4200 7.683704 GCATAACCGTCAGGATAGAGTTAAGAA 60.684 40.741 0.00 0.00 41.02 2.52
3567 4201 6.600882 AACCGTCAGGATAGAGTTAAGAAA 57.399 37.500 0.00 0.00 41.02 2.52
3568 4202 6.600882 ACCGTCAGGATAGAGTTAAGAAAA 57.399 37.500 0.00 0.00 41.02 2.29
3569 4203 6.631962 ACCGTCAGGATAGAGTTAAGAAAAG 58.368 40.000 0.00 0.00 41.02 2.27
3570 4204 6.210984 ACCGTCAGGATAGAGTTAAGAAAAGT 59.789 38.462 0.00 0.00 41.02 2.66
3571 4205 7.395489 ACCGTCAGGATAGAGTTAAGAAAAGTA 59.605 37.037 0.00 0.00 41.02 2.24
3572 4206 7.701501 CCGTCAGGATAGAGTTAAGAAAAGTAC 59.298 40.741 0.00 0.00 41.02 2.73
3573 4207 7.428761 CGTCAGGATAGAGTTAAGAAAAGTACG 59.571 40.741 0.00 0.00 0.00 3.67
3574 4208 8.242739 GTCAGGATAGAGTTAAGAAAAGTACGT 58.757 37.037 0.00 0.00 0.00 3.57
3575 4209 8.800332 TCAGGATAGAGTTAAGAAAAGTACGTT 58.200 33.333 0.00 0.00 0.00 3.99
3576 4210 9.420551 CAGGATAGAGTTAAGAAAAGTACGTTT 57.579 33.333 6.48 6.48 0.00 3.60
3577 4211 9.993454 AGGATAGAGTTAAGAAAAGTACGTTTT 57.007 29.630 8.21 5.64 41.29 2.43
3591 4225 7.998081 AAGTACGTTTTTATTACACGATTGC 57.002 32.000 0.00 0.00 37.37 3.56
3592 4226 7.355332 AGTACGTTTTTATTACACGATTGCT 57.645 32.000 0.00 0.00 37.37 3.91
3593 4227 7.450627 AGTACGTTTTTATTACACGATTGCTC 58.549 34.615 0.00 0.00 37.37 4.26
3594 4228 5.624292 ACGTTTTTATTACACGATTGCTCC 58.376 37.500 0.00 0.00 37.37 4.70
3595 4229 4.721977 CGTTTTTATTACACGATTGCTCCG 59.278 41.667 0.00 0.00 35.93 4.63
3596 4230 5.444877 CGTTTTTATTACACGATTGCTCCGA 60.445 40.000 0.00 0.00 35.93 4.55
3597 4231 5.459110 TTTTATTACACGATTGCTCCGAC 57.541 39.130 0.00 0.00 0.00 4.79
3598 4232 2.665649 ATTACACGATTGCTCCGACA 57.334 45.000 0.00 0.00 0.00 4.35
3599 4233 2.665649 TTACACGATTGCTCCGACAT 57.334 45.000 0.00 0.00 0.00 3.06
3600 4234 2.665649 TACACGATTGCTCCGACATT 57.334 45.000 0.00 0.00 0.00 2.71
3601 4235 1.808411 ACACGATTGCTCCGACATTT 58.192 45.000 0.00 0.00 0.00 2.32
3602 4236 1.464608 ACACGATTGCTCCGACATTTG 59.535 47.619 0.00 0.00 0.00 2.32
3603 4237 0.447801 ACGATTGCTCCGACATTTGC 59.552 50.000 0.00 0.00 0.00 3.68
3604 4238 0.729116 CGATTGCTCCGACATTTGCT 59.271 50.000 0.00 0.00 0.00 3.91
3605 4239 1.267732 CGATTGCTCCGACATTTGCTC 60.268 52.381 0.00 0.00 0.00 4.26
3606 4240 1.064654 GATTGCTCCGACATTTGCTCC 59.935 52.381 0.00 0.00 0.00 4.70
3607 4241 0.036732 TTGCTCCGACATTTGCTCCT 59.963 50.000 0.00 0.00 0.00 3.69
3608 4242 0.901827 TGCTCCGACATTTGCTCCTA 59.098 50.000 0.00 0.00 0.00 2.94
3609 4243 1.291132 GCTCCGACATTTGCTCCTAC 58.709 55.000 0.00 0.00 0.00 3.18
3610 4244 1.134670 GCTCCGACATTTGCTCCTACT 60.135 52.381 0.00 0.00 0.00 2.57
3611 4245 2.100916 GCTCCGACATTTGCTCCTACTA 59.899 50.000 0.00 0.00 0.00 1.82
3612 4246 3.243907 GCTCCGACATTTGCTCCTACTAT 60.244 47.826 0.00 0.00 0.00 2.12
3613 4247 4.302455 CTCCGACATTTGCTCCTACTATG 58.698 47.826 0.00 0.00 0.00 2.23
3614 4248 3.958147 TCCGACATTTGCTCCTACTATGA 59.042 43.478 0.00 0.00 0.00 2.15
3615 4249 4.588951 TCCGACATTTGCTCCTACTATGAT 59.411 41.667 0.00 0.00 0.00 2.45
3616 4250 5.070446 TCCGACATTTGCTCCTACTATGATT 59.930 40.000 0.00 0.00 0.00 2.57
3617 4251 5.760253 CCGACATTTGCTCCTACTATGATTT 59.240 40.000 0.00 0.00 0.00 2.17
3618 4252 6.260936 CCGACATTTGCTCCTACTATGATTTT 59.739 38.462 0.00 0.00 0.00 1.82
3619 4253 7.348201 CGACATTTGCTCCTACTATGATTTTC 58.652 38.462 0.00 0.00 0.00 2.29
3620 4254 7.251704 ACATTTGCTCCTACTATGATTTTCG 57.748 36.000 0.00 0.00 0.00 3.46
3621 4255 7.047891 ACATTTGCTCCTACTATGATTTTCGA 58.952 34.615 0.00 0.00 0.00 3.71
3622 4256 7.552687 ACATTTGCTCCTACTATGATTTTCGAA 59.447 33.333 0.00 0.00 0.00 3.71
3623 4257 7.539712 TTTGCTCCTACTATGATTTTCGAAG 57.460 36.000 0.00 0.00 0.00 3.79
3624 4258 6.465439 TGCTCCTACTATGATTTTCGAAGA 57.535 37.500 0.00 0.00 0.00 2.87
3625 4259 6.873997 TGCTCCTACTATGATTTTCGAAGAA 58.126 36.000 0.00 0.00 45.90 2.52
3626 4260 7.327975 TGCTCCTACTATGATTTTCGAAGAAA 58.672 34.615 0.00 0.00 45.90 2.52
3627 4261 7.822334 TGCTCCTACTATGATTTTCGAAGAAAA 59.178 33.333 9.90 9.90 45.90 2.29
3628 4262 8.665685 GCTCCTACTATGATTTTCGAAGAAAAA 58.334 33.333 11.28 0.00 45.90 1.94
3650 4284 7.566760 AAAAACATGCGATATTATCCTGTCA 57.433 32.000 0.00 0.00 0.00 3.58
3651 4285 6.791887 AAACATGCGATATTATCCTGTCAG 57.208 37.500 0.00 0.00 0.00 3.51
3652 4286 4.248859 ACATGCGATATTATCCTGTCAGC 58.751 43.478 0.00 0.00 0.00 4.26
3653 4287 4.020751 ACATGCGATATTATCCTGTCAGCT 60.021 41.667 0.00 0.00 0.00 4.24
3654 4288 5.185828 ACATGCGATATTATCCTGTCAGCTA 59.814 40.000 0.00 0.00 0.00 3.32
3655 4289 5.722021 TGCGATATTATCCTGTCAGCTAA 57.278 39.130 0.00 0.00 0.00 3.09
3656 4290 6.286240 TGCGATATTATCCTGTCAGCTAAT 57.714 37.500 0.00 3.22 0.00 1.73
3657 4291 6.101997 TGCGATATTATCCTGTCAGCTAATG 58.898 40.000 12.66 2.75 0.00 1.90
3658 4292 6.071391 TGCGATATTATCCTGTCAGCTAATGA 60.071 38.462 12.66 0.00 34.79 2.57
3659 4293 6.813649 GCGATATTATCCTGTCAGCTAATGAA 59.186 38.462 12.66 0.34 40.43 2.57
3660 4294 7.331934 GCGATATTATCCTGTCAGCTAATGAAA 59.668 37.037 12.66 0.00 40.43 2.69
3661 4295 8.651588 CGATATTATCCTGTCAGCTAATGAAAC 58.348 37.037 12.66 4.86 40.43 2.78
3662 4296 9.717942 GATATTATCCTGTCAGCTAATGAAACT 57.282 33.333 12.66 0.00 40.43 2.66
3663 4297 9.717942 ATATTATCCTGTCAGCTAATGAAACTC 57.282 33.333 12.66 0.00 40.43 3.01
3664 4298 4.890158 TCCTGTCAGCTAATGAAACTCA 57.110 40.909 0.00 0.00 40.43 3.41
3665 4299 4.825422 TCCTGTCAGCTAATGAAACTCAG 58.175 43.478 0.00 0.00 40.43 3.35
3666 4300 4.528206 TCCTGTCAGCTAATGAAACTCAGA 59.472 41.667 0.00 0.00 40.43 3.27
3667 4301 4.869297 CCTGTCAGCTAATGAAACTCAGAG 59.131 45.833 0.00 0.00 40.43 3.35
3668 4302 4.248859 TGTCAGCTAATGAAACTCAGAGC 58.751 43.478 0.00 5.58 40.43 4.09
3669 4303 4.248859 GTCAGCTAATGAAACTCAGAGCA 58.751 43.478 13.04 0.00 40.43 4.26
3670 4304 4.874966 GTCAGCTAATGAAACTCAGAGCAT 59.125 41.667 13.04 0.00 40.43 3.79
3671 4305 4.874396 TCAGCTAATGAAACTCAGAGCATG 59.126 41.667 13.04 0.00 34.02 4.06
3672 4306 4.874396 CAGCTAATGAAACTCAGAGCATGA 59.126 41.667 13.04 0.00 36.21 3.07
3673 4307 4.874966 AGCTAATGAAACTCAGAGCATGAC 59.125 41.667 13.04 0.00 33.22 3.06
3674 4308 4.874966 GCTAATGAAACTCAGAGCATGACT 59.125 41.667 0.00 0.00 33.22 3.41
3675 4309 5.220624 GCTAATGAAACTCAGAGCATGACTG 60.221 44.000 12.19 12.19 33.22 3.51
3676 4310 3.049708 TGAAACTCAGAGCATGACTGG 57.950 47.619 16.40 11.34 36.22 4.00
3677 4311 2.369860 TGAAACTCAGAGCATGACTGGT 59.630 45.455 16.40 11.79 36.22 4.00
3678 4312 3.181451 TGAAACTCAGAGCATGACTGGTT 60.181 43.478 16.40 15.39 36.22 3.67
3679 4313 2.758736 ACTCAGAGCATGACTGGTTC 57.241 50.000 16.40 0.00 36.22 3.62
3680 4314 1.277557 ACTCAGAGCATGACTGGTTCC 59.722 52.381 16.40 0.00 36.22 3.62
3681 4315 1.277273 CTCAGAGCATGACTGGTTCCA 59.723 52.381 16.40 0.00 36.22 3.53
3682 4316 1.911357 TCAGAGCATGACTGGTTCCAT 59.089 47.619 16.40 0.00 36.22 3.41
3683 4317 2.014857 CAGAGCATGACTGGTTCCATG 58.985 52.381 0.00 0.00 42.13 3.66
3686 4320 3.269578 CATGACTGGTTCCATGCCA 57.730 52.632 0.00 0.00 34.52 4.92
3687 4321 1.548081 CATGACTGGTTCCATGCCAA 58.452 50.000 0.00 0.00 35.32 4.52
3688 4322 1.894466 CATGACTGGTTCCATGCCAAA 59.106 47.619 0.00 0.00 35.32 3.28
3689 4323 2.307496 TGACTGGTTCCATGCCAAAT 57.693 45.000 0.00 0.00 35.32 2.32
3690 4324 3.448093 TGACTGGTTCCATGCCAAATA 57.552 42.857 0.00 0.00 35.32 1.40
3691 4325 3.979911 TGACTGGTTCCATGCCAAATAT 58.020 40.909 0.00 0.00 35.32 1.28
3692 4326 4.352009 TGACTGGTTCCATGCCAAATATT 58.648 39.130 0.00 0.00 35.32 1.28
3693 4327 4.160065 TGACTGGTTCCATGCCAAATATTG 59.840 41.667 0.00 0.00 35.32 1.90
3727 4361 5.876612 TTTGGCAAATATCAAATGTTGGC 57.123 34.783 8.93 0.00 44.36 4.52
3728 4362 4.822685 TGGCAAATATCAAATGTTGGCT 57.177 36.364 9.71 0.00 44.40 4.75
3729 4363 5.929058 TGGCAAATATCAAATGTTGGCTA 57.071 34.783 9.71 0.00 44.40 3.93
3730 4364 5.904941 TGGCAAATATCAAATGTTGGCTAG 58.095 37.500 9.71 0.00 44.40 3.42
3731 4365 5.421693 TGGCAAATATCAAATGTTGGCTAGT 59.578 36.000 9.71 0.00 44.40 2.57
3732 4366 5.750067 GGCAAATATCAAATGTTGGCTAGTG 59.250 40.000 0.00 0.00 41.77 2.74
3733 4367 5.750067 GCAAATATCAAATGTTGGCTAGTGG 59.250 40.000 0.00 0.00 28.77 4.00
3734 4368 6.627953 GCAAATATCAAATGTTGGCTAGTGGT 60.628 38.462 0.00 0.00 28.77 4.16
3735 4369 7.322664 CAAATATCAAATGTTGGCTAGTGGTT 58.677 34.615 0.00 0.00 0.00 3.67
3736 4370 4.789012 ATCAAATGTTGGCTAGTGGTTG 57.211 40.909 0.00 0.00 0.00 3.77
3737 4371 2.890311 TCAAATGTTGGCTAGTGGTTGG 59.110 45.455 0.00 0.00 0.00 3.77
3738 4372 2.627699 CAAATGTTGGCTAGTGGTTGGT 59.372 45.455 0.00 0.00 0.00 3.67
3739 4373 2.675658 ATGTTGGCTAGTGGTTGGTT 57.324 45.000 0.00 0.00 0.00 3.67
3740 4374 1.686355 TGTTGGCTAGTGGTTGGTTG 58.314 50.000 0.00 0.00 0.00 3.77
3741 4375 1.213182 TGTTGGCTAGTGGTTGGTTGA 59.787 47.619 0.00 0.00 0.00 3.18
3742 4376 1.607148 GTTGGCTAGTGGTTGGTTGAC 59.393 52.381 0.00 0.00 0.00 3.18
3743 4377 1.136828 TGGCTAGTGGTTGGTTGACT 58.863 50.000 0.00 0.00 0.00 3.41
3744 4378 2.331166 TGGCTAGTGGTTGGTTGACTA 58.669 47.619 0.00 0.00 0.00 2.59
3745 4379 2.038033 TGGCTAGTGGTTGGTTGACTAC 59.962 50.000 0.00 0.00 0.00 2.73
3762 4396 7.455641 TTGACTACCAACTTTTCTTGACAAA 57.544 32.000 0.00 0.00 0.00 2.83
3763 4397 7.455641 TGACTACCAACTTTTCTTGACAAAA 57.544 32.000 0.00 0.00 0.00 2.44
3764 4398 7.887381 TGACTACCAACTTTTCTTGACAAAAA 58.113 30.769 0.00 0.00 0.00 1.94
3765 4399 8.026607 TGACTACCAACTTTTCTTGACAAAAAG 58.973 33.333 9.75 9.75 45.15 2.27
3772 4406 6.479095 CTTTTCTTGACAAAAAGTTGCCAA 57.521 33.333 4.76 0.00 38.38 4.52
3773 4407 7.075674 CTTTTCTTGACAAAAAGTTGCCAAT 57.924 32.000 4.76 0.00 36.64 3.16
3774 4408 8.195617 CTTTTCTTGACAAAAAGTTGCCAATA 57.804 30.769 4.76 0.00 36.64 1.90
3775 4409 8.729805 TTTTCTTGACAAAAAGTTGCCAATAT 57.270 26.923 0.00 0.00 36.64 1.28
3776 4410 8.729805 TTTCTTGACAAAAAGTTGCCAATATT 57.270 26.923 0.00 0.00 36.64 1.28
3777 4411 8.729805 TTCTTGACAAAAAGTTGCCAATATTT 57.270 26.923 0.00 0.00 36.64 1.40
3778 4412 8.140677 TCTTGACAAAAAGTTGCCAATATTTG 57.859 30.769 9.55 9.55 36.64 2.32
3795 4429 3.984838 TGGCAACATTTGACTTGGC 57.015 47.368 0.00 0.00 46.17 4.52
3796 4430 1.412079 TGGCAACATTTGACTTGGCT 58.588 45.000 5.66 0.00 46.17 4.75
3797 4431 1.761784 TGGCAACATTTGACTTGGCTT 59.238 42.857 5.66 0.00 46.17 4.35
3798 4432 2.137523 GGCAACATTTGACTTGGCTTG 58.862 47.619 0.00 0.00 39.30 4.01
3799 4433 1.528161 GCAACATTTGACTTGGCTTGC 59.472 47.619 0.00 0.00 0.00 4.01
3800 4434 2.137523 CAACATTTGACTTGGCTTGCC 58.862 47.619 4.43 4.43 0.00 4.52
3801 4435 1.412079 ACATTTGACTTGGCTTGCCA 58.588 45.000 10.65 10.65 0.00 4.92
3802 4436 1.761784 ACATTTGACTTGGCTTGCCAA 59.238 42.857 23.48 23.48 0.00 4.52
3803 4437 2.170187 ACATTTGACTTGGCTTGCCAAA 59.830 40.909 24.70 12.35 0.00 3.28
3804 4438 3.181452 ACATTTGACTTGGCTTGCCAAAT 60.181 39.130 24.70 17.42 37.77 2.32
3805 4439 4.040217 ACATTTGACTTGGCTTGCCAAATA 59.960 37.500 24.70 12.92 36.17 1.40
3806 4440 4.888326 TTTGACTTGGCTTGCCAAATAT 57.112 36.364 24.70 14.78 0.00 1.28
3807 4441 4.888326 TTGACTTGGCTTGCCAAATATT 57.112 36.364 24.70 11.59 0.00 1.28
3808 4442 4.191033 TGACTTGGCTTGCCAAATATTG 57.809 40.909 24.70 16.17 0.00 1.90
3809 4443 3.831333 TGACTTGGCTTGCCAAATATTGA 59.169 39.130 24.70 4.38 0.00 2.57
3810 4444 4.176271 GACTTGGCTTGCCAAATATTGAC 58.824 43.478 24.70 11.51 0.00 3.18
3811 4445 3.577848 ACTTGGCTTGCCAAATATTGACA 59.422 39.130 24.70 3.01 0.00 3.58
3812 4446 4.040217 ACTTGGCTTGCCAAATATTGACAA 59.960 37.500 24.70 2.33 32.09 3.18
3813 4447 4.822685 TGGCTTGCCAAATATTGACAAT 57.177 36.364 12.40 5.87 32.60 2.71
3814 4448 4.505808 TGGCTTGCCAAATATTGACAATG 58.494 39.130 12.40 0.00 32.60 2.82
3815 4449 4.020396 TGGCTTGCCAAATATTGACAATGT 60.020 37.500 12.40 0.81 32.60 2.71
3816 4450 4.567959 GGCTTGCCAAATATTGACAATGTC 59.432 41.667 11.05 6.41 32.60 3.06
3817 4451 5.170021 GCTTGCCAAATATTGACAATGTCA 58.830 37.500 12.63 12.63 41.09 3.58
3835 4469 5.211174 TGTCAAATGTTGGCATCAAATCA 57.789 34.783 1.83 0.00 40.96 2.57
3836 4470 5.608449 TGTCAAATGTTGGCATCAAATCAA 58.392 33.333 1.83 0.00 40.96 2.57
3837 4471 6.231951 TGTCAAATGTTGGCATCAAATCAAT 58.768 32.000 1.83 0.00 40.96 2.57
3838 4472 6.711194 TGTCAAATGTTGGCATCAAATCAATT 59.289 30.769 1.83 0.00 40.96 2.32
3839 4473 7.876582 TGTCAAATGTTGGCATCAAATCAATTA 59.123 29.630 1.83 0.00 40.96 1.40
3840 4474 8.885722 GTCAAATGTTGGCATCAAATCAATTAT 58.114 29.630 1.83 0.00 34.79 1.28
3850 4484 9.546909 GGCATCAAATCAATTATATTAGTGTCG 57.453 33.333 0.00 0.00 0.00 4.35
3867 4501 9.877178 ATTAGTGTCGATTCTCTAAGAACAAAT 57.123 29.630 0.00 0.00 37.00 2.32
3869 4503 8.690680 AGTGTCGATTCTCTAAGAACAAATAC 57.309 34.615 0.00 0.00 37.00 1.89
3870 4504 8.304596 AGTGTCGATTCTCTAAGAACAAATACA 58.695 33.333 0.00 0.00 37.00 2.29
3871 4505 9.088512 GTGTCGATTCTCTAAGAACAAATACAT 57.911 33.333 0.00 0.00 37.00 2.29
3872 4506 9.653287 TGTCGATTCTCTAAGAACAAATACATT 57.347 29.630 0.00 0.00 37.00 2.71
3877 4511 9.774742 ATTCTCTAAGAACAAATACATTTTCGC 57.225 29.630 0.00 0.00 37.00 4.70
3878 4512 8.317891 TCTCTAAGAACAAATACATTTTCGCA 57.682 30.769 0.00 0.00 0.00 5.10
3879 4513 8.227791 TCTCTAAGAACAAATACATTTTCGCAC 58.772 33.333 0.00 0.00 0.00 5.34
3880 4514 7.302524 TCTAAGAACAAATACATTTTCGCACC 58.697 34.615 0.00 0.00 0.00 5.01
3881 4515 5.446143 AGAACAAATACATTTTCGCACCA 57.554 34.783 0.00 0.00 0.00 4.17
3882 4516 5.837437 AGAACAAATACATTTTCGCACCAA 58.163 33.333 0.00 0.00 0.00 3.67
3883 4517 6.276847 AGAACAAATACATTTTCGCACCAAA 58.723 32.000 0.00 0.00 0.00 3.28
3884 4518 6.928492 AGAACAAATACATTTTCGCACCAAAT 59.072 30.769 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.941463 GTCTCTGTATCGGCGGCATG 60.941 60.000 10.53 0.00 0.00 4.06
14 15 9.732130 AGCATATTTTCTAAGAAAAGTCTCTGT 57.268 29.630 0.00 0.00 30.70 3.41
20 21 9.994432 CGATTCAGCATATTTTCTAAGAAAAGT 57.006 29.630 0.00 0.00 0.00 2.66
35 36 2.628178 CTGGACCTACCGATTCAGCATA 59.372 50.000 0.00 0.00 42.61 3.14
37 38 0.824109 CTGGACCTACCGATTCAGCA 59.176 55.000 0.00 0.00 42.61 4.41
66 68 8.303876 ACGCAAAAATACAGGTAGATTTGATTT 58.696 29.630 17.10 0.00 31.62 2.17
67 69 7.826690 ACGCAAAAATACAGGTAGATTTGATT 58.173 30.769 17.10 6.12 31.62 2.57
68 70 7.391148 ACGCAAAAATACAGGTAGATTTGAT 57.609 32.000 17.10 7.16 31.62 2.57
69 71 6.811253 ACGCAAAAATACAGGTAGATTTGA 57.189 33.333 17.10 0.00 31.62 2.69
70 72 7.867445 AAACGCAAAAATACAGGTAGATTTG 57.133 32.000 12.03 12.03 32.41 2.32
133 135 7.325660 TGCAGGCTTAATAAGATGAGAAAAG 57.674 36.000 3.88 0.00 0.00 2.27
145 147 4.457603 ACAACGACAATTGCAGGCTTAATA 59.542 37.500 5.05 0.00 32.47 0.98
146 148 3.255642 ACAACGACAATTGCAGGCTTAAT 59.744 39.130 5.05 0.00 32.47 1.40
147 149 2.621055 ACAACGACAATTGCAGGCTTAA 59.379 40.909 5.05 0.00 32.47 1.85
148 150 2.225491 GACAACGACAATTGCAGGCTTA 59.775 45.455 5.05 0.00 32.47 3.09
253 255 2.231478 TGTCTAAAGTTCTGCTCTCGGG 59.769 50.000 0.00 0.00 0.00 5.14
258 260 6.734104 ATGACATTGTCTAAAGTTCTGCTC 57.266 37.500 17.26 0.00 33.15 4.26
311 313 3.957671 ATGTAGACGAGCGAATACGAA 57.042 42.857 0.00 0.00 42.66 3.85
312 314 3.957671 AATGTAGACGAGCGAATACGA 57.042 42.857 0.00 0.00 42.66 3.43
313 315 4.085721 GGAAAATGTAGACGAGCGAATACG 60.086 45.833 0.00 0.00 42.93 3.06
323 333 8.029642 ACAAAACTATCAGGAAAATGTAGACG 57.970 34.615 0.00 0.00 0.00 4.18
333 343 9.567776 TCTTTCAACATACAAAACTATCAGGAA 57.432 29.630 0.00 0.00 0.00 3.36
361 371 3.358707 ACGGAAACTTTTAAAAGCCGG 57.641 42.857 31.29 23.33 40.87 6.13
365 375 6.046885 TCGGTGTACGGAAACTTTTAAAAG 57.953 37.500 23.38 23.38 44.45 2.27
379 390 1.418342 CCGCATTCCTTCGGTGTACG 61.418 60.000 0.00 0.00 46.11 3.67
385 396 0.958382 TTTGACCCGCATTCCTTCGG 60.958 55.000 0.00 0.00 44.89 4.30
431 442 4.012374 AGAATGTTTGTAGGCATGGACAG 58.988 43.478 0.00 0.00 0.00 3.51
432 443 4.032960 AGAATGTTTGTAGGCATGGACA 57.967 40.909 0.00 0.00 0.00 4.02
443 454 2.556189 TGCCGTGCATTAGAATGTTTGT 59.444 40.909 4.27 0.00 38.65 2.83
446 457 2.436417 AGTGCCGTGCATTAGAATGTT 58.564 42.857 4.27 0.00 41.91 2.71
464 475 5.132312 TCACAGGTATGGCTAGAGTAGTAGT 59.868 44.000 0.00 0.00 0.00 2.73
496 511 5.957798 AGAAACACATGGCATATGAACAAG 58.042 37.500 13.59 4.33 0.00 3.16
514 529 6.706270 TGACAAAAGATCCAGACACTAGAAAC 59.294 38.462 0.00 0.00 0.00 2.78
523 538 4.326826 TGTCCATGACAAAAGATCCAGAC 58.673 43.478 0.00 0.00 39.78 3.51
578 597 7.966753 GTCGGTTAACCAAATTTTAAGAGGATC 59.033 37.037 24.14 1.24 35.14 3.36
669 1008 1.790387 CAAAGGCTAGTCGCACTGC 59.210 57.895 0.00 0.00 41.67 4.40
717 1064 6.509418 TGCGAGAATTTTGCCTTAACTAAT 57.491 33.333 0.00 0.00 35.11 1.73
747 1094 4.733405 CACCTTCGCTTTAACTGTGTTTTC 59.267 41.667 0.00 0.00 0.00 2.29
751 1098 2.612212 CACACCTTCGCTTTAACTGTGT 59.388 45.455 0.00 0.00 36.00 3.72
752 1099 2.612212 ACACACCTTCGCTTTAACTGTG 59.388 45.455 0.00 0.00 34.90 3.66
754 1101 4.510340 AGTTACACACCTTCGCTTTAACTG 59.490 41.667 0.00 0.00 29.35 3.16
757 1104 4.695396 TCAGTTACACACCTTCGCTTTAA 58.305 39.130 0.00 0.00 0.00 1.52
786 1133 2.608752 CCAGCAACAGCATCAACTTTCC 60.609 50.000 0.00 0.00 0.00 3.13
787 1134 2.294233 TCCAGCAACAGCATCAACTTTC 59.706 45.455 0.00 0.00 0.00 2.62
806 1160 2.646175 TACTCCTGCCTGCGTGTCC 61.646 63.158 0.00 0.00 0.00 4.02
807 1161 1.446272 GTACTCCTGCCTGCGTGTC 60.446 63.158 0.00 0.00 0.00 3.67
813 1167 3.197766 TGGATACTTTGTACTCCTGCCTG 59.802 47.826 0.00 0.00 37.61 4.85
817 1171 3.430374 CCCGTGGATACTTTGTACTCCTG 60.430 52.174 0.00 0.00 37.61 3.86
825 1179 0.533491 TCCGTCCCGTGGATACTTTG 59.467 55.000 0.00 0.00 32.73 2.77
850 1204 2.713877 GCCCGTGTTAATTACCTTCCA 58.286 47.619 0.00 0.00 0.00 3.53
854 1208 0.745486 GCCGCCCGTGTTAATTACCT 60.745 55.000 0.00 0.00 0.00 3.08
875 1229 4.100084 TCCATCAGCGCACCCCAG 62.100 66.667 11.47 0.00 0.00 4.45
876 1230 4.408821 GTCCATCAGCGCACCCCA 62.409 66.667 11.47 0.00 0.00 4.96
877 1231 4.408821 TGTCCATCAGCGCACCCC 62.409 66.667 11.47 0.00 0.00 4.95
878 1232 3.127533 GTGTCCATCAGCGCACCC 61.128 66.667 11.47 0.00 0.00 4.61
879 1233 2.358615 TGTGTCCATCAGCGCACC 60.359 61.111 11.47 0.00 0.00 5.01
880 1234 3.031964 GCTGTGTCCATCAGCGCAC 62.032 63.158 11.47 0.00 46.39 5.34
881 1235 2.743538 GCTGTGTCCATCAGCGCA 60.744 61.111 11.47 0.00 46.39 6.09
900 1254 0.948678 CGGGATGGTTTTGTCGTTGT 59.051 50.000 0.00 0.00 0.00 3.32
923 1278 4.024387 TGCCGTTTACAATTGACAGTTCTC 60.024 41.667 13.59 0.00 0.00 2.87
928 1283 2.351350 GGGTGCCGTTTACAATTGACAG 60.351 50.000 13.59 0.00 0.00 3.51
932 1287 1.201414 GAGGGGTGCCGTTTACAATTG 59.799 52.381 3.24 3.24 0.00 2.32
979 1352 4.489771 ATTTGGGAGGCTCGGCGG 62.490 66.667 7.21 0.00 0.00 6.13
981 1354 2.517166 GGATTTGGGAGGCTCGGC 60.517 66.667 8.69 0.00 0.00 5.54
982 1355 2.193248 GGGATTTGGGAGGCTCGG 59.807 66.667 8.69 0.00 0.00 4.63
1021 1394 0.250597 GAGGCGGGTAGTGTTTGGTT 60.251 55.000 0.00 0.00 0.00 3.67
1027 1400 1.751927 CTACGGAGGCGGGTAGTGT 60.752 63.158 0.00 0.00 33.18 3.55
1064 1437 1.528309 GAGAGAGAGAGGGGGAGCG 60.528 68.421 0.00 0.00 0.00 5.03
1065 1438 0.261696 AAGAGAGAGAGAGGGGGAGC 59.738 60.000 0.00 0.00 0.00 4.70
1066 1439 1.133482 GGAAGAGAGAGAGAGGGGGAG 60.133 61.905 0.00 0.00 0.00 4.30
1067 1440 0.930726 GGAAGAGAGAGAGAGGGGGA 59.069 60.000 0.00 0.00 0.00 4.81
1068 1441 0.105709 GGGAAGAGAGAGAGAGGGGG 60.106 65.000 0.00 0.00 0.00 5.40
1074 1451 2.015227 GCTGCGGGGAAGAGAGAGAG 62.015 65.000 0.00 0.00 0.00 3.20
1097 1474 1.106944 ACGCAGTTCAGTTTTGGGGG 61.107 55.000 0.00 0.00 37.78 5.40
1098 1475 1.265905 GTACGCAGTTCAGTTTTGGGG 59.734 52.381 0.00 0.00 37.78 4.96
1099 1476 2.218603 AGTACGCAGTTCAGTTTTGGG 58.781 47.619 0.00 0.00 37.78 4.12
1108 1485 2.260481 GCCTACTCAAGTACGCAGTTC 58.740 52.381 6.36 0.00 37.78 3.01
1173 1699 4.759893 CGCTCGTGCAGTTTCGCG 62.760 66.667 10.43 0.00 40.91 5.87
1261 1798 2.933287 AAGGGGGCGGTGATGACA 60.933 61.111 0.00 0.00 0.00 3.58
1837 2374 1.305718 GAGGAGGAGGTCAGGCAGT 60.306 63.158 0.00 0.00 0.00 4.40
1880 2417 3.512033 GGACTGCATCCGGAGATATAC 57.488 52.381 11.34 0.00 37.88 1.47
1984 2521 3.382832 ACTCCCTTGACGCCGAGG 61.383 66.667 0.00 0.00 42.60 4.63
2854 3406 0.529337 CATTCGGCTGCTCGATGTCT 60.529 55.000 12.63 0.00 39.03 3.41
2872 3424 3.445805 TGTGTAGCTATCAACACCGATCA 59.554 43.478 13.56 0.00 44.29 2.92
3057 3635 7.323052 AGTAGATATTTTCCCCATCTTCTCC 57.677 40.000 0.00 0.00 31.60 3.71
3116 3741 4.134563 TCAAAACTTCCTTCCTTCCTTCG 58.865 43.478 0.00 0.00 0.00 3.79
3159 3784 1.377333 CGAAAGGGAAGCAGGGGAC 60.377 63.158 0.00 0.00 0.00 4.46
3160 3785 3.077907 CGAAAGGGAAGCAGGGGA 58.922 61.111 0.00 0.00 0.00 4.81
3161 3786 2.751837 GCGAAAGGGAAGCAGGGG 60.752 66.667 0.00 0.00 0.00 4.79
3162 3787 1.303643 AAGCGAAAGGGAAGCAGGG 60.304 57.895 0.00 0.00 0.00 4.45
3265 3898 3.047877 CCACGCGACTTTGGACCC 61.048 66.667 15.93 0.00 34.46 4.46
3270 3903 1.507141 AAGGAAGCCACGCGACTTTG 61.507 55.000 15.93 0.00 0.00 2.77
3290 3923 2.355599 CTGCGGGATGCTCTAGCG 60.356 66.667 0.00 0.00 46.63 4.26
3325 3958 3.687321 ATGGCTGACGGCTGCGATT 62.687 57.895 14.45 0.00 41.46 3.34
3418 4052 3.420576 CCACAAATCACGTTGTTTTAGCG 59.579 43.478 0.00 0.00 39.73 4.26
3419 4053 4.602995 TCCACAAATCACGTTGTTTTAGC 58.397 39.130 0.00 0.00 39.73 3.09
3420 4054 5.816919 ACTCCACAAATCACGTTGTTTTAG 58.183 37.500 0.00 0.00 39.73 1.85
3421 4055 5.821516 ACTCCACAAATCACGTTGTTTTA 57.178 34.783 0.00 0.00 39.73 1.52
3422 4056 4.712122 ACTCCACAAATCACGTTGTTTT 57.288 36.364 0.00 0.00 39.73 2.43
3425 4059 3.250040 GCTTACTCCACAAATCACGTTGT 59.750 43.478 0.00 0.00 42.48 3.32
3427 4061 2.478894 CGCTTACTCCACAAATCACGTT 59.521 45.455 0.00 0.00 0.00 3.99
3459 4093 5.434352 TCTTGCTATACTCCGTACATGTC 57.566 43.478 0.00 0.00 0.00 3.06
3489 4123 3.198200 TGCTATACTCTACCCCGCAAAAA 59.802 43.478 0.00 0.00 0.00 1.94
3490 4124 2.767394 TGCTATACTCTACCCCGCAAAA 59.233 45.455 0.00 0.00 0.00 2.44
3491 4125 2.390696 TGCTATACTCTACCCCGCAAA 58.609 47.619 0.00 0.00 0.00 3.68
3492 4126 2.076207 TGCTATACTCTACCCCGCAA 57.924 50.000 0.00 0.00 0.00 4.85
3493 4127 1.961394 CTTGCTATACTCTACCCCGCA 59.039 52.381 0.00 0.00 0.00 5.69
3494 4128 2.236766 TCTTGCTATACTCTACCCCGC 58.763 52.381 0.00 0.00 0.00 6.13
3495 4129 4.337145 AGATCTTGCTATACTCTACCCCG 58.663 47.826 0.00 0.00 0.00 5.73
3496 4130 7.670559 TCTTTAGATCTTGCTATACTCTACCCC 59.329 40.741 0.00 0.00 0.00 4.95
3497 4131 8.638629 TCTTTAGATCTTGCTATACTCTACCC 57.361 38.462 0.00 0.00 0.00 3.69
3498 4132 9.292195 ACTCTTTAGATCTTGCTATACTCTACC 57.708 37.037 0.00 0.00 0.00 3.18
3501 4135 8.988546 TCACTCTTTAGATCTTGCTATACTCT 57.011 34.615 0.00 0.00 0.00 3.24
3515 4149 9.998106 GCATAGGGTAATAAATCACTCTTTAGA 57.002 33.333 0.00 0.00 0.00 2.10
3516 4150 9.778741 TGCATAGGGTAATAAATCACTCTTTAG 57.221 33.333 0.00 0.00 0.00 1.85
3520 4154 9.726438 GTTATGCATAGGGTAATAAATCACTCT 57.274 33.333 6.50 0.00 0.00 3.24
3521 4155 8.947115 GGTTATGCATAGGGTAATAAATCACTC 58.053 37.037 6.50 0.00 0.00 3.51
3522 4156 7.606456 CGGTTATGCATAGGGTAATAAATCACT 59.394 37.037 6.50 0.00 0.00 3.41
3523 4157 7.389607 ACGGTTATGCATAGGGTAATAAATCAC 59.610 37.037 6.50 0.00 0.00 3.06
3524 4158 7.455058 ACGGTTATGCATAGGGTAATAAATCA 58.545 34.615 6.50 0.00 0.00 2.57
3525 4159 7.604927 TGACGGTTATGCATAGGGTAATAAATC 59.395 37.037 6.50 0.00 0.00 2.17
3526 4160 7.455058 TGACGGTTATGCATAGGGTAATAAAT 58.545 34.615 6.50 0.00 0.00 1.40
3527 4161 6.828788 TGACGGTTATGCATAGGGTAATAAA 58.171 36.000 6.50 0.00 0.00 1.40
3528 4162 6.422344 TGACGGTTATGCATAGGGTAATAA 57.578 37.500 6.50 0.00 0.00 1.40
3529 4163 5.046878 CCTGACGGTTATGCATAGGGTAATA 60.047 44.000 6.50 0.00 0.00 0.98
3530 4164 4.262894 CCTGACGGTTATGCATAGGGTAAT 60.263 45.833 6.50 0.00 0.00 1.89
3531 4165 3.070446 CCTGACGGTTATGCATAGGGTAA 59.930 47.826 6.50 0.00 0.00 2.85
3532 4166 2.631062 CCTGACGGTTATGCATAGGGTA 59.369 50.000 6.50 0.00 0.00 3.69
3533 4167 1.416401 CCTGACGGTTATGCATAGGGT 59.584 52.381 6.50 6.32 0.00 4.34
3534 4168 1.691976 TCCTGACGGTTATGCATAGGG 59.308 52.381 6.50 3.15 0.00 3.53
3535 4169 3.685139 ATCCTGACGGTTATGCATAGG 57.315 47.619 6.50 4.80 0.00 2.57
3536 4170 5.184096 ACTCTATCCTGACGGTTATGCATAG 59.816 44.000 6.50 0.00 0.00 2.23
3537 4171 5.077564 ACTCTATCCTGACGGTTATGCATA 58.922 41.667 1.16 1.16 0.00 3.14
3538 4172 3.898123 ACTCTATCCTGACGGTTATGCAT 59.102 43.478 3.79 3.79 0.00 3.96
3539 4173 3.296854 ACTCTATCCTGACGGTTATGCA 58.703 45.455 0.00 0.00 0.00 3.96
3540 4174 4.323553 AACTCTATCCTGACGGTTATGC 57.676 45.455 0.00 0.00 0.00 3.14
3541 4175 7.273320 TCTTAACTCTATCCTGACGGTTATG 57.727 40.000 0.00 0.00 0.00 1.90
3542 4176 7.893124 TTCTTAACTCTATCCTGACGGTTAT 57.107 36.000 0.00 0.00 0.00 1.89
3543 4177 7.707624 TTTCTTAACTCTATCCTGACGGTTA 57.292 36.000 0.00 0.00 0.00 2.85
3544 4178 6.600882 TTTCTTAACTCTATCCTGACGGTT 57.399 37.500 0.00 0.00 0.00 4.44
3545 4179 6.210984 ACTTTTCTTAACTCTATCCTGACGGT 59.789 38.462 0.00 0.00 0.00 4.83
3546 4180 6.631962 ACTTTTCTTAACTCTATCCTGACGG 58.368 40.000 0.00 0.00 0.00 4.79
3547 4181 7.428761 CGTACTTTTCTTAACTCTATCCTGACG 59.571 40.741 0.00 0.00 0.00 4.35
3548 4182 8.242739 ACGTACTTTTCTTAACTCTATCCTGAC 58.757 37.037 0.00 0.00 0.00 3.51
3549 4183 8.345724 ACGTACTTTTCTTAACTCTATCCTGA 57.654 34.615 0.00 0.00 0.00 3.86
3550 4184 8.983307 AACGTACTTTTCTTAACTCTATCCTG 57.017 34.615 0.00 0.00 0.00 3.86
3551 4185 9.993454 AAAACGTACTTTTCTTAACTCTATCCT 57.007 29.630 0.00 0.00 0.00 3.24
3565 4199 8.894864 GCAATCGTGTAATAAAAACGTACTTTT 58.105 29.630 3.64 3.64 38.43 2.27
3566 4200 8.284693 AGCAATCGTGTAATAAAAACGTACTTT 58.715 29.630 0.00 0.00 38.43 2.66
3567 4201 7.799784 AGCAATCGTGTAATAAAAACGTACTT 58.200 30.769 0.00 0.00 38.43 2.24
3568 4202 7.355332 AGCAATCGTGTAATAAAAACGTACT 57.645 32.000 0.00 0.00 38.43 2.73
3569 4203 6.679919 GGAGCAATCGTGTAATAAAAACGTAC 59.320 38.462 0.00 0.00 38.43 3.67
3570 4204 6.454054 CGGAGCAATCGTGTAATAAAAACGTA 60.454 38.462 0.00 0.00 38.43 3.57
3571 4205 5.624292 GGAGCAATCGTGTAATAAAAACGT 58.376 37.500 0.00 0.00 38.43 3.99
3572 4206 4.721977 CGGAGCAATCGTGTAATAAAAACG 59.278 41.667 0.00 0.00 38.64 3.60
3573 4207 5.731263 GTCGGAGCAATCGTGTAATAAAAAC 59.269 40.000 0.00 0.00 0.00 2.43
3574 4208 5.408909 TGTCGGAGCAATCGTGTAATAAAAA 59.591 36.000 0.00 0.00 0.00 1.94
3575 4209 4.930405 TGTCGGAGCAATCGTGTAATAAAA 59.070 37.500 0.00 0.00 0.00 1.52
3576 4210 4.496360 TGTCGGAGCAATCGTGTAATAAA 58.504 39.130 0.00 0.00 0.00 1.40
3577 4211 4.112716 TGTCGGAGCAATCGTGTAATAA 57.887 40.909 0.00 0.00 0.00 1.40
3578 4212 3.786516 TGTCGGAGCAATCGTGTAATA 57.213 42.857 0.00 0.00 0.00 0.98
3579 4213 2.665649 TGTCGGAGCAATCGTGTAAT 57.334 45.000 0.00 0.00 0.00 1.89
3580 4214 2.665649 ATGTCGGAGCAATCGTGTAA 57.334 45.000 0.00 0.00 0.00 2.41
3581 4215 2.665649 AATGTCGGAGCAATCGTGTA 57.334 45.000 0.00 0.00 0.00 2.90
3582 4216 1.464608 CAAATGTCGGAGCAATCGTGT 59.535 47.619 0.00 0.00 0.00 4.49
3583 4217 1.791555 GCAAATGTCGGAGCAATCGTG 60.792 52.381 0.00 0.00 0.00 4.35
3584 4218 0.447801 GCAAATGTCGGAGCAATCGT 59.552 50.000 0.00 0.00 0.00 3.73
3585 4219 0.729116 AGCAAATGTCGGAGCAATCG 59.271 50.000 0.00 0.00 0.00 3.34
3586 4220 1.064654 GGAGCAAATGTCGGAGCAATC 59.935 52.381 0.00 0.00 0.00 2.67
3587 4221 1.098050 GGAGCAAATGTCGGAGCAAT 58.902 50.000 0.00 0.00 0.00 3.56
3588 4222 0.036732 AGGAGCAAATGTCGGAGCAA 59.963 50.000 0.00 0.00 0.00 3.91
3589 4223 0.901827 TAGGAGCAAATGTCGGAGCA 59.098 50.000 0.00 0.00 0.00 4.26
3590 4224 1.134670 AGTAGGAGCAAATGTCGGAGC 60.135 52.381 0.00 0.00 0.00 4.70
3591 4225 2.969628 AGTAGGAGCAAATGTCGGAG 57.030 50.000 0.00 0.00 0.00 4.63
3592 4226 3.958147 TCATAGTAGGAGCAAATGTCGGA 59.042 43.478 0.00 0.00 0.00 4.55
3593 4227 4.322080 TCATAGTAGGAGCAAATGTCGG 57.678 45.455 0.00 0.00 0.00 4.79
3594 4228 6.851222 AAATCATAGTAGGAGCAAATGTCG 57.149 37.500 0.00 0.00 0.00 4.35
3595 4229 7.224753 TCGAAAATCATAGTAGGAGCAAATGTC 59.775 37.037 0.00 0.00 0.00 3.06
3596 4230 7.047891 TCGAAAATCATAGTAGGAGCAAATGT 58.952 34.615 0.00 0.00 0.00 2.71
3597 4231 7.482654 TCGAAAATCATAGTAGGAGCAAATG 57.517 36.000 0.00 0.00 0.00 2.32
3598 4232 7.987458 TCTTCGAAAATCATAGTAGGAGCAAAT 59.013 33.333 0.00 0.00 0.00 2.32
3599 4233 7.327975 TCTTCGAAAATCATAGTAGGAGCAAA 58.672 34.615 0.00 0.00 0.00 3.68
3600 4234 6.873997 TCTTCGAAAATCATAGTAGGAGCAA 58.126 36.000 0.00 0.00 0.00 3.91
3601 4235 6.465439 TCTTCGAAAATCATAGTAGGAGCA 57.535 37.500 0.00 0.00 0.00 4.26
3602 4236 7.772332 TTTCTTCGAAAATCATAGTAGGAGC 57.228 36.000 0.00 0.00 0.00 4.70
3626 4260 7.566760 TGACAGGATAATATCGCATGTTTTT 57.433 32.000 0.00 0.00 0.00 1.94
3627 4261 6.293626 GCTGACAGGATAATATCGCATGTTTT 60.294 38.462 4.26 0.00 0.00 2.43
3628 4262 5.180117 GCTGACAGGATAATATCGCATGTTT 59.820 40.000 4.26 0.00 0.00 2.83
3629 4263 4.692625 GCTGACAGGATAATATCGCATGTT 59.307 41.667 4.26 0.00 0.00 2.71
3630 4264 4.020751 AGCTGACAGGATAATATCGCATGT 60.021 41.667 4.26 4.71 0.00 3.21
3631 4265 4.502016 AGCTGACAGGATAATATCGCATG 58.498 43.478 4.26 0.00 0.00 4.06
3632 4266 4.815533 AGCTGACAGGATAATATCGCAT 57.184 40.909 4.26 0.00 0.00 4.73
3633 4267 5.722021 TTAGCTGACAGGATAATATCGCA 57.278 39.130 4.26 0.00 0.00 5.10
3634 4268 6.333416 TCATTAGCTGACAGGATAATATCGC 58.667 40.000 4.26 0.00 0.00 4.58
3635 4269 8.651588 GTTTCATTAGCTGACAGGATAATATCG 58.348 37.037 4.26 0.00 32.17 2.92
3636 4270 9.717942 AGTTTCATTAGCTGACAGGATAATATC 57.282 33.333 4.26 0.00 32.17 1.63
3637 4271 9.717942 GAGTTTCATTAGCTGACAGGATAATAT 57.282 33.333 4.26 0.00 32.17 1.28
3638 4272 8.704668 TGAGTTTCATTAGCTGACAGGATAATA 58.295 33.333 4.26 0.00 32.17 0.98
3639 4273 7.568349 TGAGTTTCATTAGCTGACAGGATAAT 58.432 34.615 4.26 0.00 32.17 1.28
3640 4274 6.946340 TGAGTTTCATTAGCTGACAGGATAA 58.054 36.000 4.26 0.00 32.17 1.75
3641 4275 6.381133 TCTGAGTTTCATTAGCTGACAGGATA 59.619 38.462 4.26 0.00 32.17 2.59
3642 4276 5.188555 TCTGAGTTTCATTAGCTGACAGGAT 59.811 40.000 4.26 0.00 32.17 3.24
3643 4277 4.528206 TCTGAGTTTCATTAGCTGACAGGA 59.472 41.667 4.26 0.00 32.17 3.86
3644 4278 4.825422 TCTGAGTTTCATTAGCTGACAGG 58.175 43.478 4.26 0.00 32.17 4.00
3645 4279 4.329528 GCTCTGAGTTTCATTAGCTGACAG 59.670 45.833 6.53 0.00 34.41 3.51
3646 4280 4.248859 GCTCTGAGTTTCATTAGCTGACA 58.751 43.478 6.53 0.00 34.41 3.58
3647 4281 4.248859 TGCTCTGAGTTTCATTAGCTGAC 58.751 43.478 6.53 0.00 36.68 3.51
3648 4282 4.541973 TGCTCTGAGTTTCATTAGCTGA 57.458 40.909 6.53 0.00 36.68 4.26
3649 4283 4.874396 TCATGCTCTGAGTTTCATTAGCTG 59.126 41.667 6.53 9.09 36.68 4.24
3650 4284 4.874966 GTCATGCTCTGAGTTTCATTAGCT 59.125 41.667 6.53 0.00 36.68 3.32
3651 4285 4.874966 AGTCATGCTCTGAGTTTCATTAGC 59.125 41.667 6.53 6.61 33.55 3.09
3652 4286 5.293814 CCAGTCATGCTCTGAGTTTCATTAG 59.706 44.000 15.80 0.00 35.23 1.73
3653 4287 5.181009 CCAGTCATGCTCTGAGTTTCATTA 58.819 41.667 15.80 0.00 35.23 1.90
3654 4288 4.008330 CCAGTCATGCTCTGAGTTTCATT 58.992 43.478 15.80 0.00 35.23 2.57
3655 4289 3.008813 ACCAGTCATGCTCTGAGTTTCAT 59.991 43.478 15.80 0.00 35.23 2.57
3656 4290 2.369860 ACCAGTCATGCTCTGAGTTTCA 59.630 45.455 15.80 0.00 35.23 2.69
3657 4291 3.051081 ACCAGTCATGCTCTGAGTTTC 57.949 47.619 15.80 0.00 35.23 2.78
3658 4292 3.406764 GAACCAGTCATGCTCTGAGTTT 58.593 45.455 15.80 8.26 35.23 2.66
3659 4293 2.289945 GGAACCAGTCATGCTCTGAGTT 60.290 50.000 15.80 15.96 35.23 3.01
3660 4294 1.277557 GGAACCAGTCATGCTCTGAGT 59.722 52.381 15.80 10.59 38.09 3.41
3661 4295 1.277273 TGGAACCAGTCATGCTCTGAG 59.723 52.381 15.80 0.00 33.51 3.35
3662 4296 1.351076 TGGAACCAGTCATGCTCTGA 58.649 50.000 15.80 0.00 35.20 3.27
3663 4297 2.014857 CATGGAACCAGTCATGCTCTG 58.985 52.381 9.68 9.68 35.07 3.35
3664 4298 2.414994 CATGGAACCAGTCATGCTCT 57.585 50.000 0.00 0.00 35.07 4.09
3668 4302 1.548081 TTGGCATGGAACCAGTCATG 58.452 50.000 0.00 0.00 42.47 3.07
3669 4303 2.307496 TTTGGCATGGAACCAGTCAT 57.693 45.000 0.00 0.00 38.73 3.06
3670 4304 2.307496 ATTTGGCATGGAACCAGTCA 57.693 45.000 0.00 0.00 38.73 3.41
3671 4305 4.441913 CCAATATTTGGCATGGAACCAGTC 60.442 45.833 0.00 0.00 45.17 3.51
3672 4306 3.451902 CCAATATTTGGCATGGAACCAGT 59.548 43.478 0.00 0.00 45.17 4.00
3673 4307 4.062677 CCAATATTTGGCATGGAACCAG 57.937 45.455 0.00 0.00 45.17 4.00
3686 4320 7.451732 TGCCAAATATTAGCATGCCAATATTT 58.548 30.769 32.95 32.95 43.26 1.40
3687 4321 7.006865 TGCCAAATATTAGCATGCCAATATT 57.993 32.000 27.83 27.83 38.40 1.28
3688 4322 6.608539 TGCCAAATATTAGCATGCCAATAT 57.391 33.333 21.19 21.19 0.00 1.28
3689 4323 6.416631 TTGCCAAATATTAGCATGCCAATA 57.583 33.333 18.78 18.78 36.20 1.90
3690 4324 4.959560 TGCCAAATATTAGCATGCCAAT 57.040 36.364 15.66 15.66 0.00 3.16
3691 4325 4.750021 TTGCCAAATATTAGCATGCCAA 57.250 36.364 15.66 7.75 36.20 4.52
3692 4326 4.750021 TTTGCCAAATATTAGCATGCCA 57.250 36.364 15.66 0.00 36.20 4.92
3693 4327 7.098477 TGATATTTGCCAAATATTAGCATGCC 58.902 34.615 20.54 8.56 42.53 4.40
3694 4328 8.537049 TTGATATTTGCCAAATATTAGCATGC 57.463 30.769 20.54 10.51 42.53 4.06
3701 4335 8.623030 GCCAACATTTGATATTTGCCAAATATT 58.377 29.630 20.54 5.44 42.53 1.28
3702 4336 7.994334 AGCCAACATTTGATATTTGCCAAATAT 59.006 29.630 19.88 19.88 44.53 1.28
3703 4337 7.337167 AGCCAACATTTGATATTTGCCAAATA 58.663 30.769 12.01 12.01 39.98 1.40
3704 4338 6.181908 AGCCAACATTTGATATTTGCCAAAT 58.818 32.000 7.93 7.93 41.93 2.32
3705 4339 5.558818 AGCCAACATTTGATATTTGCCAAA 58.441 33.333 0.00 0.00 36.80 3.28
3706 4340 5.163281 AGCCAACATTTGATATTTGCCAA 57.837 34.783 0.00 0.00 0.00 4.52
3707 4341 4.822685 AGCCAACATTTGATATTTGCCA 57.177 36.364 0.00 0.00 0.00 4.92
3708 4342 5.750067 CACTAGCCAACATTTGATATTTGCC 59.250 40.000 0.00 0.00 0.00 4.52
3709 4343 5.750067 CCACTAGCCAACATTTGATATTTGC 59.250 40.000 0.00 0.00 0.00 3.68
3710 4344 6.866480 ACCACTAGCCAACATTTGATATTTG 58.134 36.000 0.00 0.00 0.00 2.32
3711 4345 7.322664 CAACCACTAGCCAACATTTGATATTT 58.677 34.615 0.00 0.00 0.00 1.40
3712 4346 6.127366 CCAACCACTAGCCAACATTTGATATT 60.127 38.462 0.00 0.00 0.00 1.28
3713 4347 5.360714 CCAACCACTAGCCAACATTTGATAT 59.639 40.000 0.00 0.00 0.00 1.63
3714 4348 4.704540 CCAACCACTAGCCAACATTTGATA 59.295 41.667 0.00 0.00 0.00 2.15
3715 4349 3.511146 CCAACCACTAGCCAACATTTGAT 59.489 43.478 0.00 0.00 0.00 2.57
3716 4350 2.890311 CCAACCACTAGCCAACATTTGA 59.110 45.455 0.00 0.00 0.00 2.69
3717 4351 2.627699 ACCAACCACTAGCCAACATTTG 59.372 45.455 0.00 0.00 0.00 2.32
3718 4352 2.957474 ACCAACCACTAGCCAACATTT 58.043 42.857 0.00 0.00 0.00 2.32
3719 4353 2.627699 CAACCAACCACTAGCCAACATT 59.372 45.455 0.00 0.00 0.00 2.71
3720 4354 2.158534 TCAACCAACCACTAGCCAACAT 60.159 45.455 0.00 0.00 0.00 2.71
3721 4355 1.213182 TCAACCAACCACTAGCCAACA 59.787 47.619 0.00 0.00 0.00 3.33
3722 4356 1.607148 GTCAACCAACCACTAGCCAAC 59.393 52.381 0.00 0.00 0.00 3.77
3723 4357 1.493022 AGTCAACCAACCACTAGCCAA 59.507 47.619 0.00 0.00 0.00 4.52
3724 4358 1.136828 AGTCAACCAACCACTAGCCA 58.863 50.000 0.00 0.00 0.00 4.75
3725 4359 2.696506 GTAGTCAACCAACCACTAGCC 58.303 52.381 0.00 0.00 0.00 3.93
3738 4372 7.455641 TTTGTCAAGAAAAGTTGGTAGTCAA 57.544 32.000 0.00 0.00 0.00 3.18
3739 4373 7.455641 TTTTGTCAAGAAAAGTTGGTAGTCA 57.544 32.000 0.00 0.00 0.00 3.41
3740 4374 8.394667 CTTTTTGTCAAGAAAAGTTGGTAGTC 57.605 34.615 2.72 0.00 38.60 2.59
3756 4390 6.857777 CCAAATATTGGCAACTTTTTGTCA 57.142 33.333 20.57 0.00 45.77 3.58
3770 4404 6.621164 GCCAAGTCAAATGTTGCCAAATATTG 60.621 38.462 0.00 0.00 28.64 1.90
3771 4405 5.412286 GCCAAGTCAAATGTTGCCAAATATT 59.588 36.000 0.00 0.00 0.00 1.28
3772 4406 4.937015 GCCAAGTCAAATGTTGCCAAATAT 59.063 37.500 0.00 0.00 0.00 1.28
3773 4407 4.040217 AGCCAAGTCAAATGTTGCCAAATA 59.960 37.500 0.00 0.00 0.00 1.40
3774 4408 3.140623 GCCAAGTCAAATGTTGCCAAAT 58.859 40.909 0.00 0.00 0.00 2.32
3775 4409 2.170187 AGCCAAGTCAAATGTTGCCAAA 59.830 40.909 0.00 0.00 0.00 3.28
3776 4410 1.761784 AGCCAAGTCAAATGTTGCCAA 59.238 42.857 0.00 0.00 0.00 4.52
3777 4411 1.412079 AGCCAAGTCAAATGTTGCCA 58.588 45.000 0.00 0.00 0.00 4.92
3778 4412 2.137523 CAAGCCAAGTCAAATGTTGCC 58.862 47.619 0.00 0.00 0.00 4.52
3779 4413 1.528161 GCAAGCCAAGTCAAATGTTGC 59.472 47.619 0.00 0.00 32.80 4.17
3780 4414 2.137523 GGCAAGCCAAGTCAAATGTTG 58.862 47.619 6.14 0.00 35.81 3.33
3781 4415 1.761784 TGGCAAGCCAAGTCAAATGTT 59.238 42.857 12.11 0.00 44.12 2.71
3782 4416 1.412079 TGGCAAGCCAAGTCAAATGT 58.588 45.000 12.11 0.00 44.12 2.71
3806 4440 8.327965 TTTGATGCCAACATTTGACATTGTCAA 61.328 33.333 24.66 24.66 42.32 3.18
3807 4441 4.038883 TGATGCCAACATTTGACATTGTCA 59.961 37.500 15.41 15.41 37.43 3.58
3808 4442 4.558178 TGATGCCAACATTTGACATTGTC 58.442 39.130 9.93 9.93 33.73 3.18
3809 4443 4.603989 TGATGCCAACATTTGACATTGT 57.396 36.364 0.00 0.00 33.73 2.71
3810 4444 5.926214 TTTGATGCCAACATTTGACATTG 57.074 34.783 0.00 0.00 33.73 2.82
3811 4445 6.231951 TGATTTGATGCCAACATTTGACATT 58.768 32.000 0.00 0.00 33.73 2.71
3812 4446 5.795972 TGATTTGATGCCAACATTTGACAT 58.204 33.333 0.00 0.00 36.41 3.06
3813 4447 5.211174 TGATTTGATGCCAACATTTGACA 57.789 34.783 0.00 0.00 36.35 3.58
3814 4448 6.730960 ATTGATTTGATGCCAACATTTGAC 57.269 33.333 0.00 0.00 36.35 3.18
3824 4458 9.546909 CGACACTAATATAATTGATTTGATGCC 57.453 33.333 0.00 0.00 0.00 4.40
3841 4475 9.877178 ATTTGTTCTTAGAGAATCGACACTAAT 57.123 29.630 0.00 0.00 42.67 1.73
3843 4477 9.784680 GTATTTGTTCTTAGAGAATCGACACTA 57.215 33.333 0.00 0.00 42.67 2.74
3844 4478 8.304596 TGTATTTGTTCTTAGAGAATCGACACT 58.695 33.333 0.00 0.00 42.67 3.55
3845 4479 8.462143 TGTATTTGTTCTTAGAGAATCGACAC 57.538 34.615 0.00 0.00 42.67 3.67
3846 4480 9.653287 AATGTATTTGTTCTTAGAGAATCGACA 57.347 29.630 0.00 0.00 42.67 4.35
3851 4485 9.774742 GCGAAAATGTATTTGTTCTTAGAGAAT 57.225 29.630 0.00 0.00 36.50 2.40
3852 4486 8.779303 TGCGAAAATGTATTTGTTCTTAGAGAA 58.221 29.630 0.00 0.00 0.00 2.87
3853 4487 8.227791 GTGCGAAAATGTATTTGTTCTTAGAGA 58.772 33.333 0.00 0.00 0.00 3.10
3854 4488 7.481798 GGTGCGAAAATGTATTTGTTCTTAGAG 59.518 37.037 0.00 0.00 0.00 2.43
3855 4489 7.041030 TGGTGCGAAAATGTATTTGTTCTTAGA 60.041 33.333 0.00 0.00 0.00 2.10
3856 4490 7.081349 TGGTGCGAAAATGTATTTGTTCTTAG 58.919 34.615 0.00 0.00 0.00 2.18
3857 4491 6.971602 TGGTGCGAAAATGTATTTGTTCTTA 58.028 32.000 0.00 0.00 0.00 2.10
3858 4492 5.837437 TGGTGCGAAAATGTATTTGTTCTT 58.163 33.333 0.00 0.00 0.00 2.52
3859 4493 5.446143 TGGTGCGAAAATGTATTTGTTCT 57.554 34.783 0.00 0.00 0.00 3.01
3860 4494 6.517914 TTTGGTGCGAAAATGTATTTGTTC 57.482 33.333 0.00 0.00 0.00 3.18



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.