Multiple sequence alignment - TraesCS2B01G417600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G417600 chr2B 100.000 2597 0 0 1 2597 597226371 597223775 0.000000e+00 4796.0
1 TraesCS2B01G417600 chr2B 84.404 109 15 2 2356 2463 206114829 206114722 3.530000e-19 106.0
2 TraesCS2B01G417600 chr2D 97.241 1667 29 10 552 2206 508093621 508091960 0.000000e+00 2808.0
3 TraesCS2B01G417600 chr2D 92.476 412 19 8 2198 2597 508091761 508091350 1.730000e-161 579.0
4 TraesCS2B01G417600 chr2D 92.558 215 14 2 82 295 508094888 508094675 9.030000e-80 307.0
5 TraesCS2B01G417600 chr2A 89.792 1734 121 33 658 2355 652595165 652593452 0.000000e+00 2170.0
6 TraesCS2B01G417600 chr2A 89.677 155 13 2 237 390 652595507 652595355 7.330000e-46 195.0
7 TraesCS2B01G417600 chr5B 86.062 1026 99 30 841 1837 570380635 570379625 0.000000e+00 1062.0
8 TraesCS2B01G417600 chr5B 88.000 100 8 3 2357 2453 580835408 580835506 5.870000e-22 115.0
9 TraesCS2B01G417600 chr5D 89.714 768 62 10 858 1610 463635581 463634816 0.000000e+00 965.0
10 TraesCS2B01G417600 chr5D 88.636 132 9 3 1710 1837 463634790 463634661 3.460000e-34 156.0
11 TraesCS2B01G417600 chr5D 84.000 100 12 3 2357 2453 473792261 473792359 2.750000e-15 93.5
12 TraesCS2B01G417600 chr5A 87.128 839 79 14 857 1692 583687196 583686384 0.000000e+00 924.0
13 TraesCS2B01G417600 chr5A 87.000 100 9 3 2357 2453 593329623 593329721 2.730000e-20 110.0
14 TraesCS2B01G417600 chr7A 86.000 100 10 3 2363 2459 581374248 581374346 1.270000e-18 104.0
15 TraesCS2B01G417600 chr7A 85.870 92 11 1 2364 2453 581374345 581374254 2.130000e-16 97.1
16 TraesCS2B01G417600 chr6A 82.857 105 16 2 2364 2466 52297318 52297214 2.750000e-15 93.5
17 TraesCS2B01G417600 chr4B 81.818 110 17 2 2356 2462 642195657 642195548 3.560000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G417600 chr2B 597223775 597226371 2596 True 4796.000000 4796 100.000000 1 2597 1 chr2B.!!$R2 2596
1 TraesCS2B01G417600 chr2D 508091350 508094888 3538 True 1231.333333 2808 94.091667 82 2597 3 chr2D.!!$R1 2515
2 TraesCS2B01G417600 chr2A 652593452 652595507 2055 True 1182.500000 2170 89.734500 237 2355 2 chr2A.!!$R1 2118
3 TraesCS2B01G417600 chr5B 570379625 570380635 1010 True 1062.000000 1062 86.062000 841 1837 1 chr5B.!!$R1 996
4 TraesCS2B01G417600 chr5D 463634661 463635581 920 True 560.500000 965 89.175000 858 1837 2 chr5D.!!$R1 979
5 TraesCS2B01G417600 chr5A 583686384 583687196 812 True 924.000000 924 87.128000 857 1692 1 chr5A.!!$R1 835

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
411 695 0.451783 CAAAAGGTGCGGCTCCATAC 59.548 55.0 21.85 1.3 0.0 2.39 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2123 3107 1.471153 GGTAAAGGTGGAGCTAGCGAC 60.471 57.143 9.55 6.92 0.0 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.995594 ATACATTTATTATCACCTGGGCATATT 57.004 29.630 0.00 0.00 0.00 1.28
27 28 8.725606 ACATTTATTATCACCTGGGCATATTT 57.274 30.769 0.00 0.00 0.00 1.40
28 29 8.806146 ACATTTATTATCACCTGGGCATATTTC 58.194 33.333 0.00 0.00 0.00 2.17
29 30 7.775053 TTTATTATCACCTGGGCATATTTCC 57.225 36.000 0.00 0.00 0.00 3.13
30 31 4.805140 TTATCACCTGGGCATATTTCCA 57.195 40.909 0.00 0.00 0.00 3.53
31 32 3.686227 ATCACCTGGGCATATTTCCAA 57.314 42.857 0.00 0.00 31.97 3.53
32 33 3.686227 TCACCTGGGCATATTTCCAAT 57.314 42.857 0.00 0.00 31.97 3.16
33 34 4.805140 TCACCTGGGCATATTTCCAATA 57.195 40.909 0.00 0.00 31.97 1.90
34 35 5.337956 TCACCTGGGCATATTTCCAATAT 57.662 39.130 0.00 0.00 31.97 1.28
35 36 6.461577 TCACCTGGGCATATTTCCAATATA 57.538 37.500 0.00 0.00 31.97 0.86
36 37 6.484288 TCACCTGGGCATATTTCCAATATAG 58.516 40.000 0.00 0.00 31.97 1.31
37 38 6.045459 TCACCTGGGCATATTTCCAATATAGT 59.955 38.462 0.00 0.00 31.97 2.12
38 39 6.151648 CACCTGGGCATATTTCCAATATAGTG 59.848 42.308 0.00 0.00 31.97 2.74
39 40 6.183361 ACCTGGGCATATTTCCAATATAGTGT 60.183 38.462 0.00 0.00 31.97 3.55
40 41 7.018149 ACCTGGGCATATTTCCAATATAGTGTA 59.982 37.037 0.00 0.00 31.97 2.90
41 42 7.336931 CCTGGGCATATTTCCAATATAGTGTAC 59.663 40.741 0.00 0.00 31.97 2.90
42 43 7.750655 TGGGCATATTTCCAATATAGTGTACA 58.249 34.615 0.00 0.00 0.00 2.90
43 44 8.390143 TGGGCATATTTCCAATATAGTGTACAT 58.610 33.333 0.00 0.00 0.00 2.29
44 45 9.243105 GGGCATATTTCCAATATAGTGTACATT 57.757 33.333 0.00 0.00 0.00 2.71
49 50 7.477144 TTTCCAATATAGTGTACATTCAGCG 57.523 36.000 0.00 0.00 0.00 5.18
50 51 6.399639 TCCAATATAGTGTACATTCAGCGA 57.600 37.500 0.00 0.00 0.00 4.93
51 52 6.993079 TCCAATATAGTGTACATTCAGCGAT 58.007 36.000 0.00 0.00 0.00 4.58
52 53 6.868339 TCCAATATAGTGTACATTCAGCGATG 59.132 38.462 0.00 0.00 0.00 3.84
53 54 6.646653 CCAATATAGTGTACATTCAGCGATGT 59.353 38.462 0.00 8.17 42.57 3.06
54 55 7.812669 CCAATATAGTGTACATTCAGCGATGTA 59.187 37.037 0.00 0.00 40.54 2.29
55 56 8.854312 CAATATAGTGTACATTCAGCGATGTAG 58.146 37.037 0.00 0.00 41.70 2.74
56 57 4.983671 AGTGTACATTCAGCGATGTAGA 57.016 40.909 0.00 7.10 41.70 2.59
57 58 4.926244 AGTGTACATTCAGCGATGTAGAG 58.074 43.478 0.00 0.00 41.70 2.43
58 59 4.399618 AGTGTACATTCAGCGATGTAGAGT 59.600 41.667 0.00 9.13 41.70 3.24
59 60 4.735822 GTGTACATTCAGCGATGTAGAGTC 59.264 45.833 0.00 0.00 41.70 3.36
60 61 4.640647 TGTACATTCAGCGATGTAGAGTCT 59.359 41.667 0.00 0.00 41.70 3.24
61 62 4.300189 ACATTCAGCGATGTAGAGTCTC 57.700 45.455 0.00 0.00 38.43 3.36
62 63 3.242903 ACATTCAGCGATGTAGAGTCTCG 60.243 47.826 0.00 0.00 38.43 4.04
63 64 2.311124 TCAGCGATGTAGAGTCTCGA 57.689 50.000 0.00 0.00 34.41 4.04
64 65 2.205911 TCAGCGATGTAGAGTCTCGAG 58.794 52.381 5.93 5.93 34.41 4.04
65 66 2.159085 TCAGCGATGTAGAGTCTCGAGA 60.159 50.000 12.08 12.08 34.41 4.04
66 67 2.033236 CAGCGATGTAGAGTCTCGAGAC 60.033 54.545 33.52 33.52 45.08 3.36
98 99 4.938080 TCCATCTAAAAGAGCACGAGATC 58.062 43.478 0.00 0.00 0.00 2.75
116 117 5.074584 AGATCTCGTTAGGGTCAACTTTC 57.925 43.478 0.00 0.00 0.00 2.62
117 118 4.773149 AGATCTCGTTAGGGTCAACTTTCT 59.227 41.667 0.00 0.00 0.00 2.52
118 119 4.950205 TCTCGTTAGGGTCAACTTTCTT 57.050 40.909 0.00 0.00 0.00 2.52
216 217 3.968724 CGCAACTTGTTTCACTCTTAAGC 59.031 43.478 0.00 0.00 0.00 3.09
222 223 4.015872 TGTTTCACTCTTAAGCCGGAAT 57.984 40.909 5.05 0.00 0.00 3.01
224 225 4.825085 TGTTTCACTCTTAAGCCGGAATTT 59.175 37.500 5.05 0.00 0.00 1.82
295 297 4.082787 GCAAAAATACAAGCCAGCTCACTA 60.083 41.667 0.00 0.00 0.00 2.74
356 637 5.991328 AATTATTGCACACACCTCGATAG 57.009 39.130 0.00 0.00 0.00 2.08
384 665 5.359292 GCAAGAGATGGATCTAAAAGCCTTT 59.641 40.000 0.00 0.00 37.25 3.11
411 695 0.451783 CAAAAGGTGCGGCTCCATAC 59.548 55.000 21.85 1.30 0.00 2.39
432 1297 9.793259 CCATACAGGTAATCCATAAACATTACT 57.207 33.333 0.00 0.00 36.24 2.24
546 1418 4.749245 AAAAACACACTAGCATTCCTCG 57.251 40.909 0.00 0.00 0.00 4.63
547 1419 3.402628 AAACACACTAGCATTCCTCGT 57.597 42.857 0.00 0.00 0.00 4.18
548 1420 4.530710 AAACACACTAGCATTCCTCGTA 57.469 40.909 0.00 0.00 0.00 3.43
549 1421 4.530710 AACACACTAGCATTCCTCGTAA 57.469 40.909 0.00 0.00 0.00 3.18
550 1422 4.530710 ACACACTAGCATTCCTCGTAAA 57.469 40.909 0.00 0.00 0.00 2.01
599 1476 2.353011 CCATCACCCATGCAGAAAACAC 60.353 50.000 0.00 0.00 0.00 3.32
608 1485 4.508861 CCATGCAGAAAACACAAGGAAAAG 59.491 41.667 0.00 0.00 0.00 2.27
913 1832 3.302347 CTCCCGCAGTCACCACTCC 62.302 68.421 0.00 0.00 0.00 3.85
951 1889 4.160439 TCGACTGATACTGCATTCCTTCTT 59.840 41.667 0.00 0.00 0.00 2.52
1664 2606 2.539142 CGCGACTTGCTACTAGTACCAG 60.539 54.545 0.00 1.05 43.27 4.00
1719 2680 3.181465 TGGAGCCTGAAATAACGAGGATC 60.181 47.826 0.00 0.00 40.85 3.36
2047 3023 4.905429 TGCACTGTTTATGTGGATGTACT 58.095 39.130 0.00 0.00 36.08 2.73
2050 3026 5.872617 GCACTGTTTATGTGGATGTACTACA 59.127 40.000 0.00 0.00 43.62 2.74
2181 3169 5.233225 TGTTGCTGATGTTTCTAGAGTCTG 58.767 41.667 1.86 0.00 0.00 3.51
2324 3521 3.952323 TCCTACATGTAACTTAGCTCGCT 59.048 43.478 7.06 0.00 0.00 4.93
2326 3523 2.271800 ACATGTAACTTAGCTCGCTGC 58.728 47.619 0.00 0.00 43.29 5.25
2344 3544 9.355215 GCTCGCTGCTTACTATCTATAAAAATA 57.645 33.333 0.00 0.00 38.95 1.40
2393 3593 3.362986 CGGATCCGAATTAATTGACGCAG 60.363 47.826 30.62 0.00 42.83 5.18
2394 3594 3.545633 GATCCGAATTAATTGACGCAGC 58.454 45.455 5.17 0.00 0.00 5.25
2396 3596 1.670811 CCGAATTAATTGACGCAGCCT 59.329 47.619 5.17 0.00 0.00 4.58
2401 3602 5.633601 CGAATTAATTGACGCAGCCTCTATA 59.366 40.000 5.17 0.00 0.00 1.31
2427 3630 5.073311 TGTTGTAGAGATTGTACAGAGGC 57.927 43.478 0.00 0.00 32.08 4.70
2443 3646 3.066621 CAGAGGCTGCGGCAATTAATTTA 59.933 43.478 21.31 0.00 40.87 1.40
2452 3655 4.378459 GCGGCAATTAATTTAGATCGGAGG 60.378 45.833 0.00 0.00 0.00 4.30
2453 3656 4.994852 CGGCAATTAATTTAGATCGGAGGA 59.005 41.667 0.00 0.00 0.00 3.71
2483 3686 5.409826 AGAATTTCGACTACAAGCTCTTTGG 59.590 40.000 0.00 0.00 41.25 3.28
2498 3701 7.338800 AGCTCTTTGGGACATAAAATACATG 57.661 36.000 0.00 0.00 39.30 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.995594 AATATGCCCAGGTGATAATAAATGTAT 57.004 29.630 0.00 0.00 0.00 2.29
1 2 9.821240 AAATATGCCCAGGTGATAATAAATGTA 57.179 29.630 0.00 0.00 0.00 2.29
2 3 8.725606 AAATATGCCCAGGTGATAATAAATGT 57.274 30.769 0.00 0.00 0.00 2.71
3 4 8.253113 GGAAATATGCCCAGGTGATAATAAATG 58.747 37.037 0.00 0.00 0.00 2.32
4 5 7.955185 TGGAAATATGCCCAGGTGATAATAAAT 59.045 33.333 0.00 0.00 0.00 1.40
5 6 7.301420 TGGAAATATGCCCAGGTGATAATAAA 58.699 34.615 0.00 0.00 0.00 1.40
6 7 6.857848 TGGAAATATGCCCAGGTGATAATAA 58.142 36.000 0.00 0.00 0.00 1.40
7 8 6.461577 TGGAAATATGCCCAGGTGATAATA 57.538 37.500 0.00 0.00 0.00 0.98
8 9 5.337956 TGGAAATATGCCCAGGTGATAAT 57.662 39.130 0.00 0.00 0.00 1.28
9 10 4.805140 TGGAAATATGCCCAGGTGATAA 57.195 40.909 0.00 0.00 0.00 1.75
10 11 4.805140 TTGGAAATATGCCCAGGTGATA 57.195 40.909 0.00 0.00 33.43 2.15
11 12 3.686227 TTGGAAATATGCCCAGGTGAT 57.314 42.857 0.00 0.00 33.43 3.06
12 13 3.686227 ATTGGAAATATGCCCAGGTGA 57.314 42.857 0.00 0.00 33.43 4.02
13 14 6.151648 CACTATATTGGAAATATGCCCAGGTG 59.848 42.308 3.30 0.00 33.43 4.00
14 15 6.183361 ACACTATATTGGAAATATGCCCAGGT 60.183 38.462 3.30 0.00 33.43 4.00
15 16 6.248433 ACACTATATTGGAAATATGCCCAGG 58.752 40.000 3.30 0.00 33.43 4.45
16 17 7.882791 TGTACACTATATTGGAAATATGCCCAG 59.117 37.037 0.00 0.00 33.43 4.45
17 18 7.750655 TGTACACTATATTGGAAATATGCCCA 58.249 34.615 0.00 0.00 0.00 5.36
18 19 8.807948 ATGTACACTATATTGGAAATATGCCC 57.192 34.615 0.00 0.00 0.00 5.36
23 24 9.203421 CGCTGAATGTACACTATATTGGAAATA 57.797 33.333 0.00 0.00 0.00 1.40
24 25 7.931407 TCGCTGAATGTACACTATATTGGAAAT 59.069 33.333 0.00 0.00 0.00 2.17
25 26 7.269316 TCGCTGAATGTACACTATATTGGAAA 58.731 34.615 0.00 0.00 0.00 3.13
26 27 6.811954 TCGCTGAATGTACACTATATTGGAA 58.188 36.000 0.00 0.00 0.00 3.53
27 28 6.399639 TCGCTGAATGTACACTATATTGGA 57.600 37.500 0.00 0.00 0.00 3.53
28 29 6.646653 ACATCGCTGAATGTACACTATATTGG 59.353 38.462 0.00 0.00 38.09 3.16
29 30 7.643528 ACATCGCTGAATGTACACTATATTG 57.356 36.000 0.00 0.00 38.09 1.90
30 31 8.793592 TCTACATCGCTGAATGTACACTATATT 58.206 33.333 0.00 0.00 40.32 1.28
31 32 8.336801 TCTACATCGCTGAATGTACACTATAT 57.663 34.615 0.00 0.00 40.32 0.86
32 33 7.444487 ACTCTACATCGCTGAATGTACACTATA 59.556 37.037 0.00 0.00 40.32 1.31
33 34 6.263392 ACTCTACATCGCTGAATGTACACTAT 59.737 38.462 0.00 0.00 40.32 2.12
34 35 5.589050 ACTCTACATCGCTGAATGTACACTA 59.411 40.000 0.00 0.00 40.32 2.74
35 36 4.399618 ACTCTACATCGCTGAATGTACACT 59.600 41.667 0.00 0.00 40.32 3.55
36 37 4.673441 ACTCTACATCGCTGAATGTACAC 58.327 43.478 0.00 0.00 40.32 2.90
37 38 4.640647 AGACTCTACATCGCTGAATGTACA 59.359 41.667 0.00 0.00 40.32 2.90
38 39 5.176407 AGACTCTACATCGCTGAATGTAC 57.824 43.478 0.00 0.00 40.32 2.90
39 40 4.024809 CGAGACTCTACATCGCTGAATGTA 60.025 45.833 0.03 0.00 40.32 2.29
40 41 3.242903 CGAGACTCTACATCGCTGAATGT 60.243 47.826 0.03 0.00 42.41 2.71
41 42 3.002759 TCGAGACTCTACATCGCTGAATG 59.997 47.826 0.03 0.00 36.43 2.67
42 43 3.206964 TCGAGACTCTACATCGCTGAAT 58.793 45.455 0.03 0.00 36.43 2.57
43 44 2.609916 CTCGAGACTCTACATCGCTGAA 59.390 50.000 6.58 0.00 36.43 3.02
44 45 2.159085 TCTCGAGACTCTACATCGCTGA 60.159 50.000 12.08 0.00 36.43 4.26
45 46 2.033236 GTCTCGAGACTCTACATCGCTG 60.033 54.545 33.28 0.00 41.65 5.18
46 47 2.206750 GTCTCGAGACTCTACATCGCT 58.793 52.381 33.28 0.00 41.65 4.93
47 48 1.934525 TGTCTCGAGACTCTACATCGC 59.065 52.381 37.63 14.81 44.99 4.58
48 49 3.866327 TCTTGTCTCGAGACTCTACATCG 59.134 47.826 37.63 19.99 44.99 3.84
49 50 5.295787 ACATCTTGTCTCGAGACTCTACATC 59.704 44.000 37.63 16.16 44.99 3.06
50 51 5.189928 ACATCTTGTCTCGAGACTCTACAT 58.810 41.667 37.63 22.40 44.99 2.29
51 52 4.580868 ACATCTTGTCTCGAGACTCTACA 58.419 43.478 37.63 20.95 44.99 2.74
52 53 5.151632 GACATCTTGTCTCGAGACTCTAC 57.848 47.826 37.63 18.71 43.73 2.59
70 71 4.872691 CGTGCTCTTTTAGATGGAAGACAT 59.127 41.667 0.00 0.00 44.18 3.06
71 72 4.021456 TCGTGCTCTTTTAGATGGAAGACA 60.021 41.667 0.00 0.00 0.00 3.41
72 73 4.495422 TCGTGCTCTTTTAGATGGAAGAC 58.505 43.478 0.00 0.00 0.00 3.01
73 74 4.462834 TCTCGTGCTCTTTTAGATGGAAGA 59.537 41.667 0.00 0.00 0.00 2.87
74 75 4.748892 TCTCGTGCTCTTTTAGATGGAAG 58.251 43.478 0.00 0.00 0.00 3.46
75 76 4.801330 TCTCGTGCTCTTTTAGATGGAA 57.199 40.909 0.00 0.00 0.00 3.53
76 77 4.646945 AGATCTCGTGCTCTTTTAGATGGA 59.353 41.667 0.00 0.00 0.00 3.41
77 78 4.942852 AGATCTCGTGCTCTTTTAGATGG 58.057 43.478 0.00 0.00 0.00 3.51
78 79 4.674662 CGAGATCTCGTGCTCTTTTAGATG 59.325 45.833 32.23 3.12 46.99 2.90
79 80 4.854399 CGAGATCTCGTGCTCTTTTAGAT 58.146 43.478 32.23 0.00 46.99 1.98
80 81 4.280101 CGAGATCTCGTGCTCTTTTAGA 57.720 45.455 32.23 0.00 46.99 2.10
98 99 6.373186 AAAAAGAAAGTTGACCCTAACGAG 57.627 37.500 0.00 0.00 35.73 4.18
184 185 7.644490 AGTGAAACAAGTTGCGAACAATTATA 58.356 30.769 1.81 0.00 41.43 0.98
224 225 8.635765 ACATTGCTAAGGTAATTCAGAGAAAA 57.364 30.769 0.00 0.00 0.00 2.29
356 637 5.008514 GCTTTTAGATCCATCTCTTGCTTCC 59.991 44.000 0.00 0.00 38.32 3.46
402 686 5.499004 TTATGGATTACCTGTATGGAGCC 57.501 43.478 0.00 0.00 39.71 4.70
525 1397 4.134563 ACGAGGAATGCTAGTGTGTTTTT 58.865 39.130 0.00 0.00 0.00 1.94
526 1398 3.740115 ACGAGGAATGCTAGTGTGTTTT 58.260 40.909 0.00 0.00 0.00 2.43
527 1399 3.402628 ACGAGGAATGCTAGTGTGTTT 57.597 42.857 0.00 0.00 0.00 2.83
528 1400 4.530710 TTACGAGGAATGCTAGTGTGTT 57.469 40.909 0.00 0.00 0.00 3.32
529 1401 4.530710 TTTACGAGGAATGCTAGTGTGT 57.469 40.909 0.00 0.00 0.00 3.72
530 1402 5.637810 TCTTTTTACGAGGAATGCTAGTGTG 59.362 40.000 0.00 0.00 0.00 3.82
531 1403 5.790593 TCTTTTTACGAGGAATGCTAGTGT 58.209 37.500 0.00 0.00 0.00 3.55
532 1404 6.721571 TTCTTTTTACGAGGAATGCTAGTG 57.278 37.500 0.00 0.00 0.00 2.74
533 1405 7.739498 TTTTCTTTTTACGAGGAATGCTAGT 57.261 32.000 0.00 0.00 0.00 2.57
534 1406 8.073768 TGTTTTTCTTTTTACGAGGAATGCTAG 58.926 33.333 0.00 0.00 0.00 3.42
535 1407 7.858879 GTGTTTTTCTTTTTACGAGGAATGCTA 59.141 33.333 0.00 0.00 0.00 3.49
536 1408 6.695713 GTGTTTTTCTTTTTACGAGGAATGCT 59.304 34.615 0.00 0.00 0.00 3.79
537 1409 6.695713 AGTGTTTTTCTTTTTACGAGGAATGC 59.304 34.615 0.00 0.00 0.00 3.56
538 1410 9.724839 TTAGTGTTTTTCTTTTTACGAGGAATG 57.275 29.630 0.00 0.00 0.00 2.67
570 1442 3.899360 CTGCATGGGTGATGGGATTATTT 59.101 43.478 0.00 0.00 31.99 1.40
571 1443 3.140707 TCTGCATGGGTGATGGGATTATT 59.859 43.478 0.00 0.00 31.99 1.40
572 1444 2.718062 TCTGCATGGGTGATGGGATTAT 59.282 45.455 0.00 0.00 31.99 1.28
573 1445 2.134354 TCTGCATGGGTGATGGGATTA 58.866 47.619 0.00 0.00 31.99 1.75
574 1446 0.928505 TCTGCATGGGTGATGGGATT 59.071 50.000 0.00 0.00 31.99 3.01
599 1476 3.836365 TTTGGCCTTTCCTTTTCCTTG 57.164 42.857 3.32 0.00 35.26 3.61
608 1485 3.383505 AGGCGTAAATATTTGGCCTTTCC 59.616 43.478 28.34 13.70 44.01 3.13
951 1889 4.507710 CACTACCCGACACTACACTACTA 58.492 47.826 0.00 0.00 0.00 1.82
1398 2339 3.207669 GCTTGATCCTGCTGGGCG 61.208 66.667 10.07 0.00 34.39 6.13
1719 2680 2.278401 GTACGCGCCTCCTTACCG 60.278 66.667 5.73 0.00 0.00 4.02
1962 2935 4.008074 TCTGGCTGCAGCTTTATATACC 57.992 45.455 35.82 17.61 41.70 2.73
2123 3107 1.471153 GGTAAAGGTGGAGCTAGCGAC 60.471 57.143 9.55 6.92 0.00 5.19
2181 3169 1.904852 CTCGCACATCAGCACACACC 61.905 60.000 0.00 0.00 0.00 4.16
2388 3588 3.198068 CAACATTGTATAGAGGCTGCGT 58.802 45.455 0.00 0.00 0.00 5.24
2393 3593 7.928706 ACAATCTCTACAACATTGTATAGAGGC 59.071 37.037 24.29 0.00 44.61 4.70
2401 3602 7.099764 CCTCTGTACAATCTCTACAACATTGT 58.900 38.462 2.32 2.32 42.20 2.71
2421 3624 1.027357 ATTAATTGCCGCAGCCTCTG 58.973 50.000 0.00 0.00 38.69 3.35
2427 3630 4.213270 TCCGATCTAAATTAATTGCCGCAG 59.787 41.667 0.39 0.00 0.00 5.18
2443 3646 5.048364 CGAAATTCTCTACATCCTCCGATCT 60.048 44.000 0.00 0.00 0.00 2.75
2452 3655 6.975772 AGCTTGTAGTCGAAATTCTCTACATC 59.024 38.462 19.75 16.11 41.11 3.06
2453 3656 6.868622 AGCTTGTAGTCGAAATTCTCTACAT 58.131 36.000 19.75 9.50 41.11 2.29
2483 3686 9.174166 ACCTCTGTTAACATGTATTTTATGTCC 57.826 33.333 9.13 0.00 37.77 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.