Multiple sequence alignment - TraesCS2B01G416900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G416900 chr2B 100.000 4337 0 0 1 4337 596409406 596413742 0.000000e+00 8010.0
1 TraesCS2B01G416900 chr2A 94.457 3969 149 27 416 4337 652287759 652291703 0.000000e+00 6045.0
2 TraesCS2B01G416900 chr2A 92.941 170 6 4 244 408 652287423 652287591 4.330000e-60 243.0
3 TraesCS2B01G416900 chr2A 100.000 39 0 0 209 247 652287287 652287325 6.020000e-09 73.1
4 TraesCS2B01G416900 chr2D 95.601 3546 124 19 416 3936 507748801 507752339 0.000000e+00 5655.0
5 TraesCS2B01G416900 chr2D 94.074 405 21 3 1 403 507748240 507748643 2.870000e-171 612.0
6 TraesCS2B01G416900 chr2D 97.600 250 4 1 4088 4337 507752393 507752640 1.110000e-115 427.0
7 TraesCS2B01G416900 chr2D 96.610 59 1 1 3990 4047 507752337 507752395 3.570000e-16 97.1
8 TraesCS2B01G416900 chr7A 77.608 786 105 32 2966 3747 65473532 65472814 1.120000e-110 411.0
9 TraesCS2B01G416900 chr7A 86.765 136 14 3 3744 3875 65461701 65461566 9.720000e-32 148.0
10 TraesCS2B01G416900 chr7A 87.037 54 7 0 2553 2606 33606952 33606899 1.300000e-05 62.1
11 TraesCS2B01G416900 chr1A 79.596 495 71 10 3381 3870 551490690 551490221 1.160000e-85 327.0
12 TraesCS2B01G416900 chr5A 74.581 716 156 24 1431 2133 593089878 593089176 1.530000e-74 291.0
13 TraesCS2B01G416900 chr5A 73.856 459 99 14 1438 1881 429754607 429755059 3.470000e-36 163.0
14 TraesCS2B01G416900 chr5D 73.870 708 161 22 1438 2133 473117336 473116641 1.200000e-65 261.0
15 TraesCS2B01G416900 chr5D 74.004 477 103 14 1438 1899 326736067 326735597 1.600000e-39 174.0
16 TraesCS2B01G416900 chr4D 74.576 649 139 22 1438 2073 50641669 50642304 1.200000e-65 261.0
17 TraesCS2B01G416900 chr5B 73.669 714 166 20 1431 2133 580515084 580514382 1.550000e-64 257.0
18 TraesCS2B01G416900 chr5B 73.800 500 108 16 1438 1921 379335954 379335462 4.460000e-40 176.0
19 TraesCS2B01G416900 chr3D 80.793 328 41 10 2937 3264 15874858 15874553 2.020000e-58 237.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G416900 chr2B 596409406 596413742 4336 False 8010.000000 8010 100.000000 1 4337 1 chr2B.!!$F1 4336
1 TraesCS2B01G416900 chr2A 652287287 652291703 4416 False 2120.366667 6045 95.799333 209 4337 3 chr2A.!!$F1 4128
2 TraesCS2B01G416900 chr2D 507748240 507752640 4400 False 1697.775000 5655 95.971250 1 4337 4 chr2D.!!$F1 4336
3 TraesCS2B01G416900 chr7A 65472814 65473532 718 True 411.000000 411 77.608000 2966 3747 1 chr7A.!!$R3 781
4 TraesCS2B01G416900 chr5A 593089176 593089878 702 True 291.000000 291 74.581000 1431 2133 1 chr5A.!!$R1 702
5 TraesCS2B01G416900 chr5D 473116641 473117336 695 True 261.000000 261 73.870000 1438 2133 1 chr5D.!!$R2 695
6 TraesCS2B01G416900 chr4D 50641669 50642304 635 False 261.000000 261 74.576000 1438 2073 1 chr4D.!!$F1 635
7 TraesCS2B01G416900 chr5B 580514382 580515084 702 True 257.000000 257 73.669000 1431 2133 1 chr5B.!!$R2 702

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
365 467 0.815734 CCCGTACCGTCAAGTCAGAT 59.184 55.0 0.00 0.0 0.0 2.90 F
649 925 0.874607 GATCCGCCGCGTTAATGTCT 60.875 55.0 12.58 0.0 0.0 3.41 F
705 981 0.969894 CAGAGGAAGAAGACACGGGT 59.030 55.0 0.00 0.0 0.0 5.28 F
2343 2661 0.745845 GCATGATCCTCGCCAACACT 60.746 55.0 0.00 0.0 0.0 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1872 2190 1.039785 CGAGGGAGATGGAGAGCACA 61.040 60.000 0.00 0.00 0.00 4.57 R
2316 2634 1.071987 GAGGATCATGCCGATGCCA 59.928 57.895 0.00 0.00 43.22 4.92 R
2649 2967 0.613777 AGAGGATGTTGAACCCGACC 59.386 55.000 0.00 0.00 0.00 4.79 R
3468 3790 0.239347 CTTTCTTCCGGCAAGTGCTG 59.761 55.000 5.07 5.07 46.63 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 4.142293 GGGTGAAGGAAGATCTGAAATTGC 60.142 45.833 0.00 0.00 0.00 3.56
52 53 4.704057 GGTGAAGGAAGATCTGAAATTGCT 59.296 41.667 0.00 0.00 0.00 3.91
63 64 4.012374 TCTGAAATTGCTTCCATCCTGAC 58.988 43.478 0.00 0.00 32.53 3.51
90 91 4.640771 TTGAAGCTATCTCTGGTGGTTT 57.359 40.909 0.00 0.00 0.00 3.27
116 117 8.408043 TCAGAGTTTTGATTTGGTTCATGTAT 57.592 30.769 0.00 0.00 0.00 2.29
180 181 8.691797 CCAAGCTAGTCTTACTAAGAGAAGATT 58.308 37.037 0.00 2.73 38.41 2.40
248 350 6.073222 GGAGAACGATTGTAAACATTCTGTGT 60.073 38.462 2.32 0.00 44.84 3.72
282 384 1.383523 GGCACACCTAAATCCTGCTC 58.616 55.000 0.00 0.00 0.00 4.26
364 466 1.870055 GCCCGTACCGTCAAGTCAGA 61.870 60.000 0.00 0.00 0.00 3.27
365 467 0.815734 CCCGTACCGTCAAGTCAGAT 59.184 55.000 0.00 0.00 0.00 2.90
403 510 6.093633 GCTCCCGATGAAACTTTTTACATACT 59.906 38.462 0.00 0.00 0.00 2.12
404 511 7.279313 GCTCCCGATGAAACTTTTTACATACTA 59.721 37.037 0.00 0.00 0.00 1.82
405 512 8.483307 TCCCGATGAAACTTTTTACATACTAC 57.517 34.615 0.00 0.00 0.00 2.73
407 514 8.889717 CCCGATGAAACTTTTTACATACTACAT 58.110 33.333 0.00 0.00 0.00 2.29
443 709 2.133858 TCCCTTTCCTTGAAGGAGGT 57.866 50.000 14.40 0.00 46.73 3.85
463 731 4.405358 AGGTGGTGTCATTGTCAATTTTGT 59.595 37.500 0.00 0.00 0.00 2.83
486 754 5.480422 GTCATTACCAAATTTTCCCCTCAGT 59.520 40.000 0.00 0.00 0.00 3.41
495 763 3.806949 TTTCCCCTCAGTACAAAGCAT 57.193 42.857 0.00 0.00 0.00 3.79
557 825 1.451927 GGCACATGAATCGCTCCCA 60.452 57.895 0.00 0.00 0.00 4.37
561 829 2.291365 CACATGAATCGCTCCCATGAA 58.709 47.619 0.00 0.00 39.86 2.57
577 848 3.524648 GAACCCGAGCAACCGTCCA 62.525 63.158 0.00 0.00 0.00 4.02
649 925 0.874607 GATCCGCCGCGTTAATGTCT 60.875 55.000 12.58 0.00 0.00 3.41
684 960 4.711949 AGACGCCTTGCAGCTGGG 62.712 66.667 17.12 9.60 0.00 4.45
705 981 0.969894 CAGAGGAAGAAGACACGGGT 59.030 55.000 0.00 0.00 0.00 5.28
742 1025 6.876257 CCTCCTTAAATATCTCCGAGAAATGG 59.124 42.308 1.27 0.00 0.00 3.16
879 1175 3.722147 GCTCTTCAGTCTCACTGTTCAA 58.278 45.455 3.64 0.00 46.03 2.69
908 1225 3.625897 CACAGCTCACCACCCCGA 61.626 66.667 0.00 0.00 0.00 5.14
909 1226 2.847234 ACAGCTCACCACCCCGAA 60.847 61.111 0.00 0.00 0.00 4.30
910 1227 2.358737 CAGCTCACCACCCCGAAC 60.359 66.667 0.00 0.00 0.00 3.95
911 1228 2.847234 AGCTCACCACCCCGAACA 60.847 61.111 0.00 0.00 0.00 3.18
912 1229 2.668550 GCTCACCACCCCGAACAC 60.669 66.667 0.00 0.00 0.00 3.32
913 1230 2.357034 CTCACCACCCCGAACACG 60.357 66.667 0.00 0.00 0.00 4.49
914 1231 2.838693 TCACCACCCCGAACACGA 60.839 61.111 0.00 0.00 0.00 4.35
915 1232 2.109387 CACCACCCCGAACACGAA 59.891 61.111 0.00 0.00 0.00 3.85
916 1233 1.524165 CACCACCCCGAACACGAAA 60.524 57.895 0.00 0.00 0.00 3.46
917 1234 1.227734 ACCACCCCGAACACGAAAG 60.228 57.895 0.00 0.00 0.00 2.62
918 1235 2.613506 CCACCCCGAACACGAAAGC 61.614 63.158 0.00 0.00 0.00 3.51
979 1296 1.606668 CATACTCGCTCTCCTCTCACC 59.393 57.143 0.00 0.00 0.00 4.02
1057 1375 3.426568 GCCTGGTGCTCGTGCTTC 61.427 66.667 11.19 4.10 40.48 3.86
1058 1376 2.345244 CCTGGTGCTCGTGCTTCT 59.655 61.111 11.19 0.00 40.48 2.85
1059 1377 1.591703 CCTGGTGCTCGTGCTTCTA 59.408 57.895 11.19 1.67 40.48 2.10
1152 1470 1.927174 CCGAGCTCGTTCGATTTTCAT 59.073 47.619 32.41 0.00 43.03 2.57
1200 1518 2.229589 CGTGAGCTCTGCGCAGATC 61.230 63.158 38.11 33.40 39.27 2.75
1381 1699 2.685380 CCAGGAGCCCCGACTTCT 60.685 66.667 0.00 0.00 37.58 2.85
1872 2190 4.471726 GTGTCGGACGGCGTCGAT 62.472 66.667 31.02 0.00 40.11 3.59
2106 2424 2.593148 AACGGCGCCAACATCACA 60.593 55.556 28.98 0.00 0.00 3.58
2157 2475 3.642778 TTCGCCTCGGCAGCAGTAC 62.643 63.158 8.87 0.00 42.06 2.73
2316 2634 1.228154 GGTTGTCAAGGAAGCGGGT 60.228 57.895 0.00 0.00 0.00 5.28
2343 2661 0.745845 GCATGATCCTCGCCAACACT 60.746 55.000 0.00 0.00 0.00 3.55
2349 2667 3.730761 CTCGCCAACACTGCAGCC 61.731 66.667 15.27 0.00 0.00 4.85
2409 2727 2.355115 GTGGCCGTTGGGGAATCT 59.645 61.111 0.00 0.00 38.47 2.40
2438 2756 1.165270 GCGGCAAAGAAGTACACCAT 58.835 50.000 0.00 0.00 0.00 3.55
2598 2916 2.045926 GGCGTGAACATCCTGGCT 60.046 61.111 0.00 0.00 0.00 4.75
2667 2985 0.392595 GGGTCGGGTTCAACATCCTC 60.393 60.000 0.00 0.00 0.00 3.71
2670 2988 1.275291 GTCGGGTTCAACATCCTCTCA 59.725 52.381 0.00 0.00 0.00 3.27
2823 3141 4.421479 CTCAAGGACGCGGCGACT 62.421 66.667 30.94 22.32 0.00 4.18
2910 3228 1.090052 GCCTGGTCTACGACATTGGC 61.090 60.000 0.00 7.83 36.91 4.52
3213 3533 2.606961 CGCAAACCAGAAGCTCGCA 61.607 57.895 0.00 0.00 0.00 5.10
3344 3666 0.109132 CCGCCAATGTGAGCTTTTCC 60.109 55.000 0.00 0.00 0.00 3.13
3366 3688 4.202090 CCCCTAGTACTGTATCGTTGTTCC 60.202 50.000 5.39 0.00 0.00 3.62
3576 3905 9.612066 AATGTTCAGTAAATGGTTGATTGTTTT 57.388 25.926 0.00 0.00 0.00 2.43
3608 3937 4.075682 TGTGTGTGTACAACATATTGGGG 58.924 43.478 0.00 0.00 41.97 4.96
3637 3966 1.794222 GGTGCGGAAAACTCCATCG 59.206 57.895 0.00 0.00 0.00 3.84
3741 4070 2.253452 GACAACGGCAGCTGCAAG 59.747 61.111 37.63 31.01 44.36 4.01
3878 4210 0.696143 TGTTCCCAGGTCACCAAGGA 60.696 55.000 6.91 3.80 0.00 3.36
3888 4220 2.508526 GTCACCAAGGAGCTGTTTCAT 58.491 47.619 0.00 0.00 0.00 2.57
3901 4233 4.687483 AGCTGTTTCATAAAAAGTGCATGC 59.313 37.500 11.82 11.82 0.00 4.06
3960 4292 7.956420 AACAACAGTACTGTCGAAATCAATA 57.044 32.000 28.04 0.00 44.13 1.90
3971 4303 9.436957 ACTGTCGAAATCAATATTAAGTGAAGT 57.563 29.630 0.00 0.00 32.66 3.01
3972 4304 9.907576 CTGTCGAAATCAATATTAAGTGAAGTC 57.092 33.333 0.00 0.00 32.66 3.01
4113 4446 2.633967 TGGCCTTCACTTTGCAATCAAT 59.366 40.909 3.32 0.00 31.33 2.57
4129 4462 5.121142 GCAATCAATTGTCATTTTCACCAGG 59.879 40.000 5.13 0.00 39.88 4.45
4223 4556 5.737860 TGATCTGTTATGTTCTGACAGCAT 58.262 37.500 0.00 0.00 40.40 3.79
4225 4558 7.503549 TGATCTGTTATGTTCTGACAGCATAT 58.496 34.615 0.00 0.00 40.40 1.78
4226 4559 7.440255 TGATCTGTTATGTTCTGACAGCATATG 59.560 37.037 0.00 0.00 40.40 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.934797 ATTTCAGATCTTCCTTCACCCA 57.065 40.909 0.00 0.00 0.00 4.51
63 64 4.272018 CACCAGAGATAGCTTCAATTTCCG 59.728 45.833 0.00 0.00 0.00 4.30
90 91 7.111247 ACATGAACCAAATCAAAACTCTGAA 57.889 32.000 0.00 0.00 32.06 3.02
127 128 4.266029 GCATAAAGACGTGCCAATTGATTG 59.734 41.667 7.12 0.00 35.35 2.67
141 142 1.032114 AGCTTGGCCGGCATAAAGAC 61.032 55.000 30.85 20.91 0.00 3.01
147 148 1.915078 AAGACTAGCTTGGCCGGCAT 61.915 55.000 30.85 10.68 34.93 4.40
152 153 4.645588 TCTCTTAGTAAGACTAGCTTGGCC 59.354 45.833 8.59 0.00 37.42 5.36
180 181 8.494433 AGCTAGGAATAAAGTTAATCCACATGA 58.506 33.333 0.00 0.00 35.58 3.07
248 350 3.925453 TGCCTTAGATTGCACACGA 57.075 47.368 0.00 0.00 31.31 4.35
272 374 3.604582 GCAGAAGTACAGAGCAGGATTT 58.395 45.455 0.00 0.00 0.00 2.17
282 384 5.413833 ACATGAAAATCTGGCAGAAGTACAG 59.586 40.000 22.84 11.32 0.00 2.74
364 466 0.674534 GGGAGCGTCGGATGAAGTAT 59.325 55.000 0.33 0.00 0.00 2.12
365 467 1.721664 CGGGAGCGTCGGATGAAGTA 61.722 60.000 0.33 0.00 0.00 2.24
403 510 4.921515 GGATGCGACGCTTCTAATTATGTA 59.078 41.667 28.05 3.15 33.95 2.29
404 511 3.741344 GGATGCGACGCTTCTAATTATGT 59.259 43.478 28.05 0.37 33.95 2.29
405 512 3.123621 GGGATGCGACGCTTCTAATTATG 59.876 47.826 28.05 0.00 33.95 1.90
407 514 2.364324 AGGGATGCGACGCTTCTAATTA 59.636 45.455 28.05 5.27 33.95 1.40
409 516 0.753262 AGGGATGCGACGCTTCTAAT 59.247 50.000 28.05 11.87 33.95 1.73
410 517 0.535335 AAGGGATGCGACGCTTCTAA 59.465 50.000 28.05 7.43 38.35 2.10
411 518 0.535335 AAAGGGATGCGACGCTTCTA 59.465 50.000 28.05 7.80 41.04 2.10
413 520 1.706287 GGAAAGGGATGCGACGCTTC 61.706 60.000 23.35 23.35 41.04 3.86
414 521 1.745489 GGAAAGGGATGCGACGCTT 60.745 57.895 22.08 15.30 43.09 4.68
418 684 1.740025 CTTCAAGGAAAGGGATGCGAC 59.260 52.381 0.00 0.00 0.00 5.19
443 709 5.588958 TGACAAAATTGACAATGACACCA 57.411 34.783 0.34 0.00 30.42 4.17
463 731 5.650283 ACTGAGGGGAAAATTTGGTAATGA 58.350 37.500 0.00 0.00 0.00 2.57
557 825 1.375523 GACGGTTGCTCGGGTTCAT 60.376 57.895 0.00 0.00 0.00 2.57
561 829 4.309950 GTGGACGGTTGCTCGGGT 62.310 66.667 0.00 0.00 0.00 5.28
577 848 1.002366 GCGCATTGATTCGTCTCAGT 58.998 50.000 0.30 0.00 0.00 3.41
684 960 0.390472 CCGTGTCTTCTTCCTCTGCC 60.390 60.000 0.00 0.00 0.00 4.85
723 1006 9.494271 CATTCTTCCATTTCTCGGAGATATTTA 57.506 33.333 8.81 0.00 33.89 1.40
742 1025 3.548818 GCTTGTCACACACCACATTCTTC 60.549 47.826 0.00 0.00 0.00 2.87
879 1175 2.203294 GCTGTGGGGTTGAACCGT 60.203 61.111 8.47 0.00 39.83 4.83
908 1225 2.555547 GCAGCCCAGCTTTCGTGTT 61.556 57.895 0.00 0.00 36.40 3.32
909 1226 2.980233 GCAGCCCAGCTTTCGTGT 60.980 61.111 0.00 0.00 36.40 4.49
910 1227 2.670934 AGCAGCCCAGCTTTCGTG 60.671 61.111 0.00 0.00 43.70 4.35
911 1228 2.670934 CAGCAGCCCAGCTTTCGT 60.671 61.111 0.00 0.00 43.70 3.85
912 1229 3.437795 CCAGCAGCCCAGCTTTCG 61.438 66.667 0.00 0.00 43.70 3.46
913 1230 2.034687 TCCAGCAGCCCAGCTTTC 59.965 61.111 0.00 0.00 43.70 2.62
914 1231 2.035312 CTCCAGCAGCCCAGCTTT 59.965 61.111 0.00 0.00 43.70 3.51
915 1232 4.737177 GCTCCAGCAGCCCAGCTT 62.737 66.667 0.00 0.00 43.70 3.74
918 1235 4.711949 AACGCTCCAGCAGCCCAG 62.712 66.667 0.00 0.00 46.74 4.45
957 1274 0.596082 GAGAGGAGAGCGAGTATGGC 59.404 60.000 0.00 0.00 41.64 4.40
1057 1375 2.606725 CAGAAATGCTCGCTTGGAGTAG 59.393 50.000 0.00 0.00 45.03 2.57
1058 1376 2.621338 CAGAAATGCTCGCTTGGAGTA 58.379 47.619 0.00 0.00 45.03 2.59
1059 1377 1.446907 CAGAAATGCTCGCTTGGAGT 58.553 50.000 0.00 0.00 45.03 3.85
1091 1409 1.653151 GACGATGTAAGTCTTGGGGC 58.347 55.000 0.00 0.00 35.84 5.80
1134 1452 3.540359 CGTGATGAAAATCGAACGAGCTC 60.540 47.826 2.73 2.73 0.00 4.09
1152 1470 2.338015 GGAGGCGTACCACTCGTGA 61.338 63.158 0.00 0.00 39.06 4.35
1200 1518 1.391157 CCTCCTCCTCCTCAGCTTCG 61.391 65.000 0.00 0.00 0.00 3.79
1788 2106 2.325082 CCAGCACACCTTGTACGCC 61.325 63.158 0.00 0.00 0.00 5.68
1872 2190 1.039785 CGAGGGAGATGGAGAGCACA 61.040 60.000 0.00 0.00 0.00 4.57
1932 2250 4.652131 ATGGCCCCAAACGACGCA 62.652 61.111 0.00 0.00 0.00 5.24
2157 2475 2.908015 CCCATGTAGACCACCGGG 59.092 66.667 6.32 0.00 41.29 5.73
2241 2559 2.069273 CATATCACGATCTTTCCGGCC 58.931 52.381 0.00 0.00 0.00 6.13
2316 2634 1.071987 GAGGATCATGCCGATGCCA 59.928 57.895 0.00 0.00 43.22 4.92
2649 2967 0.613777 AGAGGATGTTGAACCCGACC 59.386 55.000 0.00 0.00 0.00 4.79
2778 3096 0.031178 AGGTGTTGTCGTGGACGTAC 59.969 55.000 0.00 0.00 40.80 3.67
2910 3228 1.546961 ACTCCAGGTACTCGTTCTGG 58.453 55.000 8.40 8.40 46.91 3.86
3086 3404 3.266376 CGTTTGTCACGGTGCGGT 61.266 61.111 2.51 0.00 45.89 5.68
3117 3437 1.822990 ACCTTGACATGGTACGTCGAT 59.177 47.619 11.18 0.00 35.80 3.59
3213 3533 4.164981 TGGTCCTCACTGTAACCTTGTAT 58.835 43.478 0.00 0.00 32.82 2.29
3344 3666 4.497006 CGGAACAACGATACAGTACTAGGG 60.497 50.000 0.00 0.00 35.47 3.53
3468 3790 0.239347 CTTTCTTCCGGCAAGTGCTG 59.761 55.000 5.07 5.07 46.63 4.41
3584 3913 5.010112 CCCCAATATGTTGTACACACACAAA 59.990 40.000 11.42 3.85 39.98 2.83
3637 3966 0.582005 AATCGAGCTAAATTCGCCGC 59.418 50.000 0.00 0.00 37.94 6.53
3673 4002 1.151668 AGAAACTCTGCACATGCGAC 58.848 50.000 0.00 0.00 45.83 5.19
3741 4070 4.148825 ACAGATCAGACGCGGGCC 62.149 66.667 12.47 0.00 0.00 5.80
3747 4076 0.811915 AACCGAGGACAGATCAGACG 59.188 55.000 0.00 0.00 0.00 4.18
3878 4210 4.687483 GCATGCACTTTTTATGAAACAGCT 59.313 37.500 14.21 0.00 0.00 4.24
3888 4220 6.588719 AGTTAAGATGGCATGCACTTTTTA 57.411 33.333 21.36 8.24 0.00 1.52
3901 4233 3.119708 GGTTCAGCAGCAAGTTAAGATGG 60.120 47.826 0.00 0.00 0.00 3.51
3960 4292 5.855045 ACTGAAAGACCGACTTCACTTAAT 58.145 37.500 0.00 0.00 37.93 1.40
3971 4303 3.556775 CGTTGGTAAAACTGAAAGACCGA 59.443 43.478 0.00 0.00 37.43 4.69
3972 4304 3.556775 TCGTTGGTAAAACTGAAAGACCG 59.443 43.478 0.00 0.00 37.43 4.79
4048 4381 1.133513 TGAATTTGAGCACTGGTGGGT 60.134 47.619 2.84 0.00 0.00 4.51
4113 4446 7.777440 TGCATATATACCTGGTGAAAATGACAA 59.223 33.333 10.23 0.00 0.00 3.18
4223 4556 6.094881 TCTGTATATATGCTGTAGCGCACATA 59.905 38.462 11.47 9.68 43.61 2.29
4225 4558 4.217550 TCTGTATATATGCTGTAGCGCACA 59.782 41.667 11.47 11.35 43.61 4.57
4226 4559 4.733850 TCTGTATATATGCTGTAGCGCAC 58.266 43.478 11.47 6.60 43.61 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.