Multiple sequence alignment - TraesCS2B01G416600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G416600 chr2B 100.000 4279 0 0 1 4279 595576931 595581209 0.000000e+00 7902.0
1 TraesCS2B01G416600 chr2B 73.764 991 227 27 1498 2473 595369797 595368825 4.070000e-95 359.0
2 TraesCS2B01G416600 chr2D 93.640 3758 162 33 578 4279 507258253 507261989 0.000000e+00 5544.0
3 TraesCS2B01G416600 chr2D 74.622 993 215 31 1498 2473 507216315 507215343 1.850000e-108 403.0
4 TraesCS2B01G416600 chr2D 95.918 49 1 1 3413 3460 76645520 76645472 1.280000e-10 78.7
5 TraesCS2B01G416600 chr2A 95.507 2092 74 10 541 2622 651915210 651917291 0.000000e+00 3325.0
6 TraesCS2B01G416600 chr2A 90.688 945 48 16 2654 3577 651917521 651918446 0.000000e+00 1221.0
7 TraesCS2B01G416600 chr2A 90.152 660 61 2 3620 4279 651918443 651919098 0.000000e+00 856.0
8 TraesCS2B01G416600 chr2A 86.092 568 52 9 1 549 651909239 651909798 1.710000e-163 586.0
9 TraesCS2B01G416600 chr2A 74.414 981 220 27 1498 2464 651822043 651821080 4.010000e-105 392.0
10 TraesCS2B01G416600 chr6B 91.919 99 8 0 1082 1180 539277045 539277143 5.770000e-29 139.0
11 TraesCS2B01G416600 chr6B 90.909 99 9 0 1082 1180 67948325 67948227 2.680000e-27 134.0
12 TraesCS2B01G416600 chr6B 73.664 262 52 14 3411 3663 277619925 277619672 7.620000e-13 86.1
13 TraesCS2B01G416600 chr6B 92.105 38 3 0 3413 3450 46193611 46193574 2.000000e-03 54.7
14 TraesCS2B01G416600 chr3D 90.909 99 9 0 1082 1180 90199512 90199414 2.680000e-27 134.0
15 TraesCS2B01G416600 chr5A 77.434 226 44 4 1 225 305580895 305581114 1.250000e-25 128.0
16 TraesCS2B01G416600 chr1D 89.899 99 10 0 1082 1180 488429110 488429012 1.250000e-25 128.0
17 TraesCS2B01G416600 chr1D 86.667 105 14 0 3883 3987 51805542 51805438 2.700000e-22 117.0
18 TraesCS2B01G416600 chr1D 84.906 106 15 1 3883 3987 51755848 51755743 5.850000e-19 106.0
19 TraesCS2B01G416600 chr1B 91.011 89 8 0 1082 1170 453199243 453199331 2.090000e-23 121.0
20 TraesCS2B01G416600 chr1B 86.792 106 9 4 3891 3994 676956171 676956069 3.500000e-21 113.0
21 TraesCS2B01G416600 chr1B 84.112 107 15 1 3890 3994 363450786 363450892 7.570000e-18 102.0
22 TraesCS2B01G416600 chr7B 87.629 97 12 0 3891 3987 652303131 652303035 3.500000e-21 113.0
23 TraesCS2B01G416600 chr7B 82.812 64 10 1 60 122 465215092 465215155 5.980000e-04 56.5
24 TraesCS2B01G416600 chr7A 85.714 105 13 2 3891 3993 643253375 643253271 4.520000e-20 110.0
25 TraesCS2B01G416600 chr7D 81.746 126 19 4 3891 4013 554895396 554895272 7.570000e-18 102.0
26 TraesCS2B01G416600 chr5D 77.273 176 35 4 74 246 534081536 534081363 9.790000e-17 99.0
27 TraesCS2B01G416600 chr5D 87.500 56 7 0 78 133 388047459 388047404 9.930000e-07 65.8
28 TraesCS2B01G416600 chr4A 78.808 151 27 5 71 218 637817037 637817185 3.520000e-16 97.1
29 TraesCS2B01G416600 chr6A 91.667 48 4 0 3414 3461 585347988 585348035 2.760000e-07 67.6
30 TraesCS2B01G416600 chr1A 93.333 45 3 0 3417 3461 49965375 49965331 2.760000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G416600 chr2B 595576931 595581209 4278 False 7902.000000 7902 100.000000 1 4279 1 chr2B.!!$F1 4278
1 TraesCS2B01G416600 chr2B 595368825 595369797 972 True 359.000000 359 73.764000 1498 2473 1 chr2B.!!$R1 975
2 TraesCS2B01G416600 chr2D 507258253 507261989 3736 False 5544.000000 5544 93.640000 578 4279 1 chr2D.!!$F1 3701
3 TraesCS2B01G416600 chr2D 507215343 507216315 972 True 403.000000 403 74.622000 1498 2473 1 chr2D.!!$R2 975
4 TraesCS2B01G416600 chr2A 651915210 651919098 3888 False 1800.666667 3325 92.115667 541 4279 3 chr2A.!!$F2 3738
5 TraesCS2B01G416600 chr2A 651909239 651909798 559 False 586.000000 586 86.092000 1 549 1 chr2A.!!$F1 548
6 TraesCS2B01G416600 chr2A 651821080 651822043 963 True 392.000000 392 74.414000 1498 2464 1 chr2A.!!$R1 966

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
261 262 0.034337 ACGCCACGCCGGAATATAAT 59.966 50.0 5.05 0.0 36.56 1.28 F
968 980 0.035458 CGCTCCACCAATCCTATCCC 59.965 60.0 0.00 0.0 0.00 3.85 F
2569 2599 0.390472 CGGTTCTCTTCTCACCCTGC 60.390 60.0 0.00 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2083 2110 0.310543 TGGCATTGTCGTTGCACTTC 59.689 50.000 0.0 0.0 41.95 3.01 R
2890 3152 1.136305 CAAAACGCCCTCCTCGATCTA 59.864 52.381 0.0 0.0 0.00 1.98 R
3759 4060 0.248990 CGCTGCACCAAAAAGAAGCA 60.249 50.000 0.0 0.0 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.498865 CGTATTGATGGGCCTGCGTC 61.499 60.000 4.53 0.00 0.00 5.19
25 26 1.227527 TATTGATGGGCCTGCGTCG 60.228 57.895 4.53 0.00 0.00 5.12
26 27 1.966901 TATTGATGGGCCTGCGTCGT 61.967 55.000 4.53 0.00 0.00 4.34
27 28 3.824028 TATTGATGGGCCTGCGTCGTC 62.824 57.143 4.53 0.00 0.00 4.20
87 88 2.203070 GCGGCCTCGATCACCAAT 60.203 61.111 0.00 0.00 39.00 3.16
96 97 1.835483 CGATCACCAATGCGCTAGGC 61.835 60.000 9.73 0.00 43.96 3.93
112 113 2.109181 GCCGCATCCTCCACTACC 59.891 66.667 0.00 0.00 0.00 3.18
113 114 2.435693 GCCGCATCCTCCACTACCT 61.436 63.158 0.00 0.00 0.00 3.08
114 115 1.742768 CCGCATCCTCCACTACCTC 59.257 63.158 0.00 0.00 0.00 3.85
115 116 1.360551 CGCATCCTCCACTACCTCG 59.639 63.158 0.00 0.00 0.00 4.63
116 117 1.742768 GCATCCTCCACTACCTCGG 59.257 63.158 0.00 0.00 0.00 4.63
117 118 0.755698 GCATCCTCCACTACCTCGGA 60.756 60.000 0.00 0.00 0.00 4.55
120 121 3.527641 CTCCACTACCTCGGAGGC 58.472 66.667 23.84 0.00 44.37 4.70
121 122 2.439701 TCCACTACCTCGGAGGCG 60.440 66.667 23.84 16.82 39.63 5.52
122 123 3.528370 CCACTACCTCGGAGGCGG 61.528 72.222 23.84 17.76 39.63 6.13
123 124 4.208686 CACTACCTCGGAGGCGGC 62.209 72.222 23.84 0.00 39.63 6.53
153 154 3.648694 CCCTAGGGCTCAAGGGTC 58.351 66.667 16.90 0.00 46.45 4.46
154 155 2.435693 CCCTAGGGCTCAAGGGTCG 61.436 68.421 16.90 0.00 46.45 4.79
155 156 1.686110 CCTAGGGCTCAAGGGTCGT 60.686 63.158 0.00 0.00 0.00 4.34
156 157 1.677637 CCTAGGGCTCAAGGGTCGTC 61.678 65.000 0.00 0.00 0.00 4.20
157 158 2.005960 CTAGGGCTCAAGGGTCGTCG 62.006 65.000 0.00 0.00 0.00 5.12
158 159 2.776370 TAGGGCTCAAGGGTCGTCGT 62.776 60.000 0.00 0.00 0.00 4.34
159 160 2.432628 GGCTCAAGGGTCGTCGTG 60.433 66.667 0.00 0.00 0.00 4.35
160 161 2.338984 GCTCAAGGGTCGTCGTGT 59.661 61.111 0.00 0.00 0.00 4.49
161 162 1.733399 GCTCAAGGGTCGTCGTGTC 60.733 63.158 0.00 0.00 0.00 3.67
162 163 1.080705 CTCAAGGGTCGTCGTGTCC 60.081 63.158 0.00 0.00 0.00 4.02
163 164 1.802337 CTCAAGGGTCGTCGTGTCCA 61.802 60.000 0.00 0.00 0.00 4.02
164 165 1.068417 CAAGGGTCGTCGTGTCCAA 59.932 57.895 0.00 0.00 0.00 3.53
165 166 0.944311 CAAGGGTCGTCGTGTCCAAG 60.944 60.000 0.00 0.00 0.00 3.61
166 167 2.048503 GGGTCGTCGTGTCCAAGG 60.049 66.667 0.00 0.00 0.00 3.61
167 168 2.567497 GGGTCGTCGTGTCCAAGGA 61.567 63.158 0.00 0.00 0.00 3.36
168 169 1.080705 GGTCGTCGTGTCCAAGGAG 60.081 63.158 0.00 0.00 0.00 3.69
169 170 1.080705 GTCGTCGTGTCCAAGGAGG 60.081 63.158 0.00 0.00 39.47 4.30
170 171 1.228337 TCGTCGTGTCCAAGGAGGA 60.228 57.895 0.00 0.00 46.75 3.71
177 178 3.068881 TCCAAGGAGGAACAGGCG 58.931 61.111 0.00 0.00 45.65 5.52
178 179 2.045926 CCAAGGAGGAACAGGCGG 60.046 66.667 0.00 0.00 41.22 6.13
179 180 2.747855 CAAGGAGGAACAGGCGGC 60.748 66.667 0.00 0.00 0.00 6.53
180 181 3.249189 AAGGAGGAACAGGCGGCA 61.249 61.111 13.08 0.00 0.00 5.69
181 182 2.829384 AAGGAGGAACAGGCGGCAA 61.829 57.895 13.08 0.00 0.00 4.52
182 183 2.747855 GGAGGAACAGGCGGCAAG 60.748 66.667 13.08 5.73 0.00 4.01
183 184 2.747855 GAGGAACAGGCGGCAAGG 60.748 66.667 13.08 2.33 0.00 3.61
196 197 2.486504 CAAGGCAACATGCGCGAT 59.513 55.556 12.10 0.00 46.21 4.58
197 198 1.720894 CAAGGCAACATGCGCGATA 59.279 52.632 12.10 0.00 46.21 2.92
198 199 0.308684 CAAGGCAACATGCGCGATAT 59.691 50.000 12.10 0.00 46.21 1.63
199 200 0.308684 AAGGCAACATGCGCGATATG 59.691 50.000 12.10 16.28 46.21 1.78
200 201 0.532640 AGGCAACATGCGCGATATGA 60.533 50.000 24.41 0.00 46.21 2.15
201 202 0.110509 GGCAACATGCGCGATATGAG 60.111 55.000 24.41 17.86 46.21 2.90
202 203 0.723790 GCAACATGCGCGATATGAGC 60.724 55.000 24.41 21.86 44.57 4.26
210 211 3.554232 CGATATGAGCGGCGCAAT 58.446 55.556 35.02 27.11 0.00 3.56
211 212 1.131218 CGATATGAGCGGCGCAATG 59.869 57.895 35.02 12.03 0.00 2.82
212 213 1.154338 GATATGAGCGGCGCAATGC 60.154 57.895 35.02 19.64 45.38 3.56
236 237 3.126879 CTGCTCCGCATTCGCCAA 61.127 61.111 0.00 0.00 38.13 4.52
237 238 3.104602 CTGCTCCGCATTCGCCAAG 62.105 63.158 0.00 0.00 38.13 3.61
238 239 3.127533 GCTCCGCATTCGCCAAGT 61.128 61.111 0.00 0.00 33.11 3.16
239 240 3.093278 CTCCGCATTCGCCAAGTC 58.907 61.111 0.00 0.00 33.11 3.01
240 241 1.741401 CTCCGCATTCGCCAAGTCA 60.741 57.895 0.00 0.00 33.11 3.41
241 242 1.970917 CTCCGCATTCGCCAAGTCAC 61.971 60.000 0.00 0.00 33.11 3.67
242 243 2.324330 CCGCATTCGCCAAGTCACA 61.324 57.895 0.00 0.00 33.11 3.58
243 244 1.154413 CGCATTCGCCAAGTCACAC 60.154 57.895 0.00 0.00 33.11 3.82
244 245 1.154413 GCATTCGCCAAGTCACACG 60.154 57.895 0.00 0.00 0.00 4.49
245 246 1.154413 CATTCGCCAAGTCACACGC 60.154 57.895 0.00 0.00 0.00 5.34
246 247 2.325082 ATTCGCCAAGTCACACGCC 61.325 57.895 0.00 0.00 0.00 5.68
247 248 3.741830 TTCGCCAAGTCACACGCCA 62.742 57.895 0.00 0.00 0.00 5.69
248 249 4.012895 CGCCAAGTCACACGCCAC 62.013 66.667 0.00 0.00 0.00 5.01
249 250 4.012895 GCCAAGTCACACGCCACG 62.013 66.667 0.00 0.00 0.00 4.94
250 251 4.012895 CCAAGTCACACGCCACGC 62.013 66.667 0.00 0.00 0.00 5.34
251 252 4.012895 CAAGTCACACGCCACGCC 62.013 66.667 0.00 0.00 0.00 5.68
257 258 4.071875 ACACGCCACGCCGGAATA 62.072 61.111 5.05 0.00 36.56 1.75
258 259 2.587753 CACGCCACGCCGGAATAT 60.588 61.111 5.05 0.00 36.56 1.28
259 260 1.300311 CACGCCACGCCGGAATATA 60.300 57.895 5.05 0.00 36.56 0.86
260 261 0.876777 CACGCCACGCCGGAATATAA 60.877 55.000 5.05 0.00 36.56 0.98
261 262 0.034337 ACGCCACGCCGGAATATAAT 59.966 50.000 5.05 0.00 36.56 1.28
262 263 1.153353 CGCCACGCCGGAATATAATT 58.847 50.000 5.05 0.00 36.56 1.40
263 264 1.533731 CGCCACGCCGGAATATAATTT 59.466 47.619 5.05 0.00 36.56 1.82
264 265 2.031508 CGCCACGCCGGAATATAATTTT 60.032 45.455 5.05 0.00 36.56 1.82
265 266 3.186817 CGCCACGCCGGAATATAATTTTA 59.813 43.478 5.05 0.00 36.56 1.52
266 267 4.668177 CGCCACGCCGGAATATAATTTTAG 60.668 45.833 5.05 0.00 36.56 1.85
267 268 4.214758 GCCACGCCGGAATATAATTTTAGT 59.785 41.667 5.05 0.00 36.56 2.24
268 269 5.409214 GCCACGCCGGAATATAATTTTAGTA 59.591 40.000 5.05 0.00 36.56 1.82
269 270 6.401796 GCCACGCCGGAATATAATTTTAGTAG 60.402 42.308 5.05 0.00 36.56 2.57
270 271 6.647895 CCACGCCGGAATATAATTTTAGTAGT 59.352 38.462 5.05 0.00 36.56 2.73
271 272 7.172019 CCACGCCGGAATATAATTTTAGTAGTT 59.828 37.037 5.05 0.00 36.56 2.24
272 273 9.195411 CACGCCGGAATATAATTTTAGTAGTTA 57.805 33.333 5.05 0.00 0.00 2.24
273 274 9.415544 ACGCCGGAATATAATTTTAGTAGTTAG 57.584 33.333 5.05 0.00 0.00 2.34
274 275 9.630098 CGCCGGAATATAATTTTAGTAGTTAGA 57.370 33.333 5.05 0.00 0.00 2.10
290 291 8.396272 AGTAGTTAGAATGAACTTGCATTTGT 57.604 30.769 0.00 0.00 40.22 2.83
291 292 8.850156 AGTAGTTAGAATGAACTTGCATTTGTT 58.150 29.630 0.00 0.00 40.22 2.83
292 293 9.463443 GTAGTTAGAATGAACTTGCATTTGTTT 57.537 29.630 0.00 0.00 40.22 2.83
294 295 9.463443 AGTTAGAATGAACTTGCATTTGTTTAC 57.537 29.630 0.00 0.00 38.53 2.01
295 296 9.463443 GTTAGAATGAACTTGCATTTGTTTACT 57.537 29.630 0.00 0.00 38.53 2.24
298 299 9.066892 AGAATGAACTTGCATTTGTTTACTAGA 57.933 29.630 0.00 0.00 38.53 2.43
299 300 9.846248 GAATGAACTTGCATTTGTTTACTAGAT 57.154 29.630 0.00 0.00 38.53 1.98
302 303 8.946085 TGAACTTGCATTTGTTTACTAGATAGG 58.054 33.333 0.00 0.00 0.00 2.57
303 304 9.162764 GAACTTGCATTTGTTTACTAGATAGGA 57.837 33.333 0.00 0.00 0.00 2.94
304 305 8.494016 ACTTGCATTTGTTTACTAGATAGGAC 57.506 34.615 0.00 0.00 0.00 3.85
305 306 8.322091 ACTTGCATTTGTTTACTAGATAGGACT 58.678 33.333 0.00 0.00 0.00 3.85
306 307 8.718102 TTGCATTTGTTTACTAGATAGGACTC 57.282 34.615 0.00 0.00 0.00 3.36
307 308 7.847096 TGCATTTGTTTACTAGATAGGACTCA 58.153 34.615 0.00 0.00 0.00 3.41
308 309 8.318412 TGCATTTGTTTACTAGATAGGACTCAA 58.682 33.333 0.00 0.00 0.00 3.02
309 310 9.162764 GCATTTGTTTACTAGATAGGACTCAAA 57.837 33.333 0.00 0.00 0.00 2.69
314 315 9.653287 TGTTTACTAGATAGGACTCAAACAATG 57.347 33.333 0.00 0.00 33.19 2.82
315 316 9.654663 GTTTACTAGATAGGACTCAAACAATGT 57.345 33.333 0.00 0.00 0.00 2.71
323 324 9.573133 GATAGGACTCAAACAATGTTTATTTGG 57.427 33.333 11.33 0.00 34.70 3.28
324 325 7.360113 AGGACTCAAACAATGTTTATTTGGT 57.640 32.000 11.33 6.14 34.70 3.67
325 326 8.472007 AGGACTCAAACAATGTTTATTTGGTA 57.528 30.769 11.33 0.00 34.70 3.25
326 327 8.357402 AGGACTCAAACAATGTTTATTTGGTAC 58.643 33.333 11.33 6.92 34.70 3.34
327 328 8.357402 GGACTCAAACAATGTTTATTTGGTACT 58.643 33.333 11.33 0.00 34.70 2.73
328 329 9.180678 GACTCAAACAATGTTTATTTGGTACTG 57.819 33.333 11.33 0.00 34.70 2.74
329 330 7.651704 ACTCAAACAATGTTTATTTGGTACTGC 59.348 33.333 11.33 0.00 34.70 4.40
330 331 7.492524 TCAAACAATGTTTATTTGGTACTGCA 58.507 30.769 11.33 0.00 34.70 4.41
331 332 7.436673 TCAAACAATGTTTATTTGGTACTGCAC 59.563 33.333 11.33 0.00 34.70 4.57
332 333 6.398234 ACAATGTTTATTTGGTACTGCACA 57.602 33.333 0.00 0.00 0.00 4.57
333 334 6.991938 ACAATGTTTATTTGGTACTGCACAT 58.008 32.000 0.00 0.00 0.00 3.21
334 335 6.867816 ACAATGTTTATTTGGTACTGCACATG 59.132 34.615 0.00 0.00 0.00 3.21
335 336 6.588719 ATGTTTATTTGGTACTGCACATGT 57.411 33.333 0.00 0.00 0.00 3.21
336 337 6.398234 TGTTTATTTGGTACTGCACATGTT 57.602 33.333 0.00 0.00 0.00 2.71
337 338 6.212235 TGTTTATTTGGTACTGCACATGTTG 58.788 36.000 0.00 0.00 0.00 3.33
338 339 6.183360 TGTTTATTTGGTACTGCACATGTTGT 60.183 34.615 0.00 0.00 0.00 3.32
350 351 4.566545 CACATGTTGTGTAATGTGTGGT 57.433 40.909 0.00 0.00 45.56 4.16
351 352 5.681337 CACATGTTGTGTAATGTGTGGTA 57.319 39.130 0.00 0.00 45.56 3.25
352 353 6.066054 CACATGTTGTGTAATGTGTGGTAA 57.934 37.500 0.00 0.00 45.56 2.85
353 354 6.499172 CACATGTTGTGTAATGTGTGGTAAA 58.501 36.000 0.00 0.00 45.56 2.01
354 355 6.416455 CACATGTTGTGTAATGTGTGGTAAAC 59.584 38.462 0.00 0.00 45.56 2.01
355 356 6.095580 ACATGTTGTGTAATGTGTGGTAAACA 59.904 34.615 0.00 0.00 39.91 2.83
356 357 6.701145 TGTTGTGTAATGTGTGGTAAACAT 57.299 33.333 0.00 0.00 41.97 2.71
357 358 6.499172 TGTTGTGTAATGTGTGGTAAACATG 58.501 36.000 0.00 0.00 41.97 3.21
358 359 6.095580 TGTTGTGTAATGTGTGGTAAACATGT 59.904 34.615 0.00 0.00 41.97 3.21
359 360 6.307031 TGTGTAATGTGTGGTAAACATGTC 57.693 37.500 0.00 0.00 41.97 3.06
360 361 6.058833 TGTGTAATGTGTGGTAAACATGTCT 58.941 36.000 0.00 0.00 41.97 3.41
361 362 7.217906 TGTGTAATGTGTGGTAAACATGTCTA 58.782 34.615 0.00 0.00 41.97 2.59
362 363 7.171848 TGTGTAATGTGTGGTAAACATGTCTAC 59.828 37.037 0.00 0.00 41.97 2.59
363 364 7.171848 GTGTAATGTGTGGTAAACATGTCTACA 59.828 37.037 11.34 5.04 41.97 2.74
364 365 7.715686 TGTAATGTGTGGTAAACATGTCTACAA 59.284 33.333 11.34 0.00 41.97 2.41
365 366 5.994887 TGTGTGGTAAACATGTCTACAAC 57.005 39.130 9.57 9.57 41.97 3.32
366 367 5.429130 TGTGTGGTAAACATGTCTACAACA 58.571 37.500 14.40 14.40 41.97 3.33
377 378 4.817318 TGTCTACAACATAGACCATGCA 57.183 40.909 10.73 0.00 42.32 3.96
378 379 5.357742 TGTCTACAACATAGACCATGCAT 57.642 39.130 10.73 0.00 42.32 3.96
379 380 6.478512 TGTCTACAACATAGACCATGCATA 57.521 37.500 0.00 0.00 42.32 3.14
380 381 6.883744 TGTCTACAACATAGACCATGCATAA 58.116 36.000 0.00 0.00 42.32 1.90
381 382 6.761242 TGTCTACAACATAGACCATGCATAAC 59.239 38.462 0.00 0.00 42.32 1.89
382 383 6.202954 GTCTACAACATAGACCATGCATAACC 59.797 42.308 0.00 0.00 38.29 2.85
383 384 4.854173 ACAACATAGACCATGCATAACCA 58.146 39.130 0.00 0.00 38.29 3.67
384 385 5.260424 ACAACATAGACCATGCATAACCAA 58.740 37.500 0.00 0.00 38.29 3.67
385 386 5.714333 ACAACATAGACCATGCATAACCAAA 59.286 36.000 0.00 0.00 38.29 3.28
386 387 5.835113 ACATAGACCATGCATAACCAAAC 57.165 39.130 0.00 0.00 38.29 2.93
387 388 4.335315 ACATAGACCATGCATAACCAAACG 59.665 41.667 0.00 0.00 38.29 3.60
388 389 2.790433 AGACCATGCATAACCAAACGT 58.210 42.857 0.00 0.00 0.00 3.99
389 390 2.747446 AGACCATGCATAACCAAACGTC 59.253 45.455 0.00 0.00 0.00 4.34
390 391 2.486203 GACCATGCATAACCAAACGTCA 59.514 45.455 0.00 0.00 0.00 4.35
391 392 3.088532 ACCATGCATAACCAAACGTCAT 58.911 40.909 0.00 0.00 0.00 3.06
392 393 3.119531 ACCATGCATAACCAAACGTCATG 60.120 43.478 0.00 0.00 0.00 3.07
393 394 3.119531 CCATGCATAACCAAACGTCATGT 60.120 43.478 0.00 0.00 0.00 3.21
394 395 4.484236 CATGCATAACCAAACGTCATGTT 58.516 39.130 0.00 0.00 44.59 2.71
406 407 4.613570 ACGTCATGTTTCGTACGTTAAC 57.386 40.909 16.05 19.17 45.51 2.01
407 408 4.041049 ACGTCATGTTTCGTACGTTAACA 58.959 39.130 27.54 27.54 45.51 2.41
408 409 4.502282 ACGTCATGTTTCGTACGTTAACAA 59.498 37.500 28.40 17.77 45.51 2.83
409 410 4.829686 CGTCATGTTTCGTACGTTAACAAC 59.170 41.667 28.40 23.51 35.62 3.32
410 411 5.132576 GTCATGTTTCGTACGTTAACAACC 58.867 41.667 28.40 19.74 35.62 3.77
411 412 3.832643 TGTTTCGTACGTTAACAACCG 57.167 42.857 25.18 4.10 0.00 4.44
412 413 3.182967 TGTTTCGTACGTTAACAACCGT 58.817 40.909 25.18 0.06 40.87 4.83
413 414 4.352039 TGTTTCGTACGTTAACAACCGTA 58.648 39.130 25.18 10.05 38.43 4.02
414 415 4.439449 TGTTTCGTACGTTAACAACCGTAG 59.561 41.667 25.18 0.00 39.92 3.51
415 416 2.580589 TCGTACGTTAACAACCGTAGC 58.419 47.619 16.05 0.00 39.92 3.58
416 417 2.031595 TCGTACGTTAACAACCGTAGCA 60.032 45.455 16.05 0.00 39.92 3.49
417 418 2.088969 CGTACGTTAACAACCGTAGCAC 59.911 50.000 7.22 0.00 39.92 4.40
418 419 2.222007 ACGTTAACAACCGTAGCACA 57.778 45.000 6.39 0.00 35.16 4.57
419 420 2.758009 ACGTTAACAACCGTAGCACAT 58.242 42.857 6.39 0.00 35.16 3.21
420 421 3.911868 ACGTTAACAACCGTAGCACATA 58.088 40.909 6.39 0.00 35.16 2.29
421 422 4.305769 ACGTTAACAACCGTAGCACATAA 58.694 39.130 6.39 0.00 35.16 1.90
422 423 4.150451 ACGTTAACAACCGTAGCACATAAC 59.850 41.667 6.39 0.00 35.16 1.89
423 424 4.150274 CGTTAACAACCGTAGCACATAACA 59.850 41.667 6.39 0.00 0.00 2.41
424 425 5.333187 CGTTAACAACCGTAGCACATAACAA 60.333 40.000 6.39 0.00 0.00 2.83
425 426 6.604930 GTTAACAACCGTAGCACATAACAAT 58.395 36.000 0.00 0.00 0.00 2.71
426 427 5.699097 AACAACCGTAGCACATAACAATT 57.301 34.783 0.00 0.00 0.00 2.32
427 428 5.041951 ACAACCGTAGCACATAACAATTG 57.958 39.130 3.24 3.24 0.00 2.32
428 429 4.517453 ACAACCGTAGCACATAACAATTGT 59.483 37.500 4.92 4.92 0.00 2.71
429 430 4.939509 ACCGTAGCACATAACAATTGTC 57.060 40.909 12.39 0.00 0.00 3.18
430 431 4.320023 ACCGTAGCACATAACAATTGTCA 58.680 39.130 12.39 0.00 0.00 3.58
431 432 4.757657 ACCGTAGCACATAACAATTGTCAA 59.242 37.500 12.39 3.69 0.00 3.18
432 433 5.086058 CCGTAGCACATAACAATTGTCAAC 58.914 41.667 12.39 0.00 0.00 3.18
433 434 5.086058 CGTAGCACATAACAATTGTCAACC 58.914 41.667 12.39 0.00 0.00 3.77
434 435 5.334491 CGTAGCACATAACAATTGTCAACCA 60.334 40.000 12.39 0.00 0.00 3.67
435 436 5.528043 AGCACATAACAATTGTCAACCAA 57.472 34.783 12.39 0.00 37.49 3.67
436 437 5.911752 AGCACATAACAATTGTCAACCAAA 58.088 33.333 12.39 0.00 36.44 3.28
437 438 5.752955 AGCACATAACAATTGTCAACCAAAC 59.247 36.000 12.39 0.00 36.44 2.93
438 439 5.521735 GCACATAACAATTGTCAACCAAACA 59.478 36.000 12.39 0.00 36.44 2.83
439 440 6.202570 GCACATAACAATTGTCAACCAAACAT 59.797 34.615 12.39 0.00 36.44 2.71
440 441 7.254727 GCACATAACAATTGTCAACCAAACATT 60.255 33.333 12.39 0.00 36.44 2.71
441 442 9.254133 CACATAACAATTGTCAACCAAACATTA 57.746 29.630 12.39 0.00 36.44 1.90
442 443 9.255304 ACATAACAATTGTCAACCAAACATTAC 57.745 29.630 12.39 0.00 36.44 1.89
443 444 6.820470 AACAATTGTCAACCAAACATTACG 57.180 33.333 12.39 0.00 36.44 3.18
444 445 5.897050 ACAATTGTCAACCAAACATTACGT 58.103 33.333 4.92 0.00 36.44 3.57
445 446 7.028926 ACAATTGTCAACCAAACATTACGTA 57.971 32.000 4.92 0.00 36.44 3.57
446 447 7.653647 ACAATTGTCAACCAAACATTACGTAT 58.346 30.769 4.92 0.00 36.44 3.06
447 448 7.593273 ACAATTGTCAACCAAACATTACGTATG 59.407 33.333 4.92 0.00 36.44 2.39
448 449 6.862711 TTGTCAACCAAACATTACGTATGA 57.137 33.333 0.00 0.00 37.69 2.15
449 450 6.862711 TGTCAACCAAACATTACGTATGAA 57.137 33.333 0.00 0.00 37.69 2.57
450 451 7.260558 TGTCAACCAAACATTACGTATGAAA 57.739 32.000 0.00 0.00 37.69 2.69
451 452 7.133513 TGTCAACCAAACATTACGTATGAAAC 58.866 34.615 0.00 0.00 37.69 2.78
452 453 7.012515 TGTCAACCAAACATTACGTATGAAACT 59.987 33.333 0.00 0.00 37.69 2.66
453 454 7.322699 GTCAACCAAACATTACGTATGAAACTG 59.677 37.037 0.00 0.00 37.69 3.16
454 455 5.695818 ACCAAACATTACGTATGAAACTGC 58.304 37.500 0.00 0.00 37.69 4.40
455 456 5.472137 ACCAAACATTACGTATGAAACTGCT 59.528 36.000 0.00 0.00 37.69 4.24
456 457 6.021596 CCAAACATTACGTATGAAACTGCTC 58.978 40.000 0.00 0.00 37.69 4.26
457 458 6.348132 CCAAACATTACGTATGAAACTGCTCA 60.348 38.462 0.00 0.00 37.69 4.26
458 459 6.408858 AACATTACGTATGAAACTGCTCAG 57.591 37.500 0.00 0.00 37.69 3.35
459 460 5.479306 ACATTACGTATGAAACTGCTCAGT 58.521 37.500 0.00 0.00 39.39 3.41
460 461 5.348724 ACATTACGTATGAAACTGCTCAGTG 59.651 40.000 2.97 0.00 38.47 3.66
461 462 3.660501 ACGTATGAAACTGCTCAGTGA 57.339 42.857 2.97 0.00 41.58 3.41
462 463 4.193826 ACGTATGAAACTGCTCAGTGAT 57.806 40.909 2.97 0.00 41.58 3.06
463 464 3.928992 ACGTATGAAACTGCTCAGTGATG 59.071 43.478 2.97 0.00 41.58 3.07
464 465 3.242220 CGTATGAAACTGCTCAGTGATGC 60.242 47.826 2.97 0.20 41.58 3.91
465 466 1.527034 TGAAACTGCTCAGTGATGCC 58.473 50.000 2.97 0.00 41.58 4.40
466 467 0.807496 GAAACTGCTCAGTGATGCCC 59.193 55.000 2.97 0.00 41.58 5.36
467 468 0.403271 AAACTGCTCAGTGATGCCCT 59.597 50.000 2.97 0.00 41.58 5.19
468 469 0.322277 AACTGCTCAGTGATGCCCTG 60.322 55.000 2.97 5.49 41.58 4.45
469 470 2.045634 TGCTCAGTGATGCCCTGC 60.046 61.111 10.72 3.11 0.00 4.85
470 471 2.045634 GCTCAGTGATGCCCTGCA 60.046 61.111 0.00 0.00 44.86 4.41
471 472 2.113433 GCTCAGTGATGCCCTGCAG 61.113 63.158 6.78 6.78 43.65 4.41
472 473 1.600638 CTCAGTGATGCCCTGCAGA 59.399 57.895 17.39 0.00 43.65 4.26
473 474 0.743701 CTCAGTGATGCCCTGCAGAC 60.744 60.000 17.39 7.59 43.65 3.51
474 475 1.196766 TCAGTGATGCCCTGCAGACT 61.197 55.000 17.39 6.47 43.65 3.24
475 476 0.538584 CAGTGATGCCCTGCAGACTA 59.461 55.000 17.39 0.13 43.65 2.59
476 477 0.539051 AGTGATGCCCTGCAGACTAC 59.461 55.000 17.39 5.41 43.65 2.73
477 478 0.250234 GTGATGCCCTGCAGACTACA 59.750 55.000 17.39 7.84 43.65 2.74
478 479 0.983467 TGATGCCCTGCAGACTACAA 59.017 50.000 17.39 0.00 43.65 2.41
479 480 1.350684 TGATGCCCTGCAGACTACAAA 59.649 47.619 17.39 0.00 43.65 2.83
480 481 2.224744 TGATGCCCTGCAGACTACAAAA 60.225 45.455 17.39 0.00 43.65 2.44
481 482 1.604604 TGCCCTGCAGACTACAAAAC 58.395 50.000 17.39 0.00 33.32 2.43
482 483 1.142870 TGCCCTGCAGACTACAAAACT 59.857 47.619 17.39 0.00 33.32 2.66
483 484 2.370519 TGCCCTGCAGACTACAAAACTA 59.629 45.455 17.39 0.00 33.32 2.24
484 485 3.009033 TGCCCTGCAGACTACAAAACTAT 59.991 43.478 17.39 0.00 33.32 2.12
485 486 4.224147 TGCCCTGCAGACTACAAAACTATA 59.776 41.667 17.39 0.00 33.32 1.31
486 487 5.104527 TGCCCTGCAGACTACAAAACTATAT 60.105 40.000 17.39 0.00 33.32 0.86
487 488 5.237344 GCCCTGCAGACTACAAAACTATATG 59.763 44.000 17.39 0.00 0.00 1.78
488 489 5.237344 CCCTGCAGACTACAAAACTATATGC 59.763 44.000 17.39 0.00 0.00 3.14
489 490 5.817296 CCTGCAGACTACAAAACTATATGCA 59.183 40.000 17.39 0.00 38.70 3.96
490 491 6.316140 CCTGCAGACTACAAAACTATATGCAA 59.684 38.462 17.39 0.00 40.28 4.08
491 492 7.148255 CCTGCAGACTACAAAACTATATGCAAA 60.148 37.037 17.39 0.00 40.28 3.68
492 493 8.105097 TGCAGACTACAAAACTATATGCAAAA 57.895 30.769 0.00 0.00 38.13 2.44
493 494 8.020819 TGCAGACTACAAAACTATATGCAAAAC 58.979 33.333 0.00 0.00 38.13 2.43
494 495 8.020819 GCAGACTACAAAACTATATGCAAAACA 58.979 33.333 0.00 0.00 0.00 2.83
506 507 9.889128 ACTATATGCAAAACATAATTTTTGGCT 57.111 25.926 9.67 0.00 44.36 4.75
509 510 6.690194 TGCAAAACATAATTTTTGGCTTGT 57.310 29.167 9.67 0.00 43.72 3.16
510 511 7.792374 TGCAAAACATAATTTTTGGCTTGTA 57.208 28.000 9.67 0.00 43.72 2.41
511 512 8.388484 TGCAAAACATAATTTTTGGCTTGTAT 57.612 26.923 9.67 0.00 43.72 2.29
512 513 8.844244 TGCAAAACATAATTTTTGGCTTGTATT 58.156 25.926 9.67 0.00 43.72 1.89
513 514 9.328721 GCAAAACATAATTTTTGGCTTGTATTC 57.671 29.630 9.67 0.00 43.72 1.75
516 517 9.777297 AAACATAATTTTTGGCTTGTATTCACT 57.223 25.926 0.00 0.00 0.00 3.41
517 518 8.986477 ACATAATTTTTGGCTTGTATTCACTC 57.014 30.769 0.00 0.00 0.00 3.51
518 519 8.584157 ACATAATTTTTGGCTTGTATTCACTCA 58.416 29.630 0.00 0.00 0.00 3.41
519 520 9.421806 CATAATTTTTGGCTTGTATTCACTCAA 57.578 29.630 0.00 0.00 0.00 3.02
520 521 7.713764 AATTTTTGGCTTGTATTCACTCAAC 57.286 32.000 0.00 0.00 0.00 3.18
521 522 4.481930 TTTGGCTTGTATTCACTCAACG 57.518 40.909 0.00 0.00 0.00 4.10
522 523 3.394674 TGGCTTGTATTCACTCAACGA 57.605 42.857 0.00 0.00 0.00 3.85
523 524 3.325870 TGGCTTGTATTCACTCAACGAG 58.674 45.455 0.00 0.00 35.52 4.18
524 525 3.006430 TGGCTTGTATTCACTCAACGAGA 59.994 43.478 0.00 0.00 33.32 4.04
525 526 3.368236 GGCTTGTATTCACTCAACGAGAC 59.632 47.826 0.00 0.00 33.32 3.36
526 527 3.987868 GCTTGTATTCACTCAACGAGACA 59.012 43.478 0.00 0.00 33.32 3.41
527 528 4.143305 GCTTGTATTCACTCAACGAGACAC 60.143 45.833 0.00 0.00 33.32 3.67
528 529 4.577834 TGTATTCACTCAACGAGACACA 57.422 40.909 0.00 0.00 33.32 3.72
529 530 4.939271 TGTATTCACTCAACGAGACACAA 58.061 39.130 0.00 0.00 33.32 3.33
530 531 4.743151 TGTATTCACTCAACGAGACACAAC 59.257 41.667 0.00 0.00 33.32 3.32
531 532 3.520290 TTCACTCAACGAGACACAACT 57.480 42.857 0.00 0.00 33.32 3.16
532 533 3.079960 TCACTCAACGAGACACAACTC 57.920 47.619 0.00 0.00 33.32 3.01
538 539 3.952811 GAGACACAACTCGGCCAC 58.047 61.111 2.24 0.00 0.00 5.01
539 540 1.069090 GAGACACAACTCGGCCACA 59.931 57.895 2.24 0.00 0.00 4.17
572 573 2.095263 CCCAAAACGATGCAACCTACTG 60.095 50.000 0.00 0.00 0.00 2.74
653 654 0.712979 TCCACTGGTCCTGGATCTCT 59.287 55.000 8.69 0.00 32.52 3.10
883 894 5.577554 GTCTCTTCCTTCTTCGTACCATTTC 59.422 44.000 0.00 0.00 0.00 2.17
884 895 5.245301 TCTCTTCCTTCTTCGTACCATTTCA 59.755 40.000 0.00 0.00 0.00 2.69
915 926 2.415512 GGTCAGATACGTTGCTTTGGAC 59.584 50.000 0.00 0.00 0.00 4.02
925 936 0.476338 TGCTTTGGACCCACTGCTAA 59.524 50.000 11.76 0.00 0.00 3.09
965 976 0.469917 CACCGCTCCACCAATCCTAT 59.530 55.000 0.00 0.00 0.00 2.57
968 980 0.035458 CGCTCCACCAATCCTATCCC 59.965 60.000 0.00 0.00 0.00 3.85
981 993 3.343617 TCCTATCCCTTTTTGCGTCTTG 58.656 45.455 0.00 0.00 0.00 3.02
1237 1264 4.814294 AGATTCCCGACCACGCGC 62.814 66.667 5.73 0.00 38.29 6.86
1726 1753 1.674322 CAAGAAATCCGGCGGGTGT 60.674 57.895 27.98 15.99 33.83 4.16
1786 1813 1.080093 TCGGTACTACGACGACGGT 60.080 57.895 12.58 3.39 44.46 4.83
2014 2041 2.301009 GGGGTTTAAGGACGACTTCAGA 59.699 50.000 0.00 0.00 40.64 3.27
2361 2388 1.547675 GGATGTTCTGCAGGGGTTCAA 60.548 52.381 15.13 0.00 0.00 2.69
2470 2500 1.522355 CATGGAAGACGCGCTGGAT 60.522 57.895 5.73 0.00 0.00 3.41
2566 2596 1.202313 CGATCGGTTCTCTTCTCACCC 60.202 57.143 7.38 0.00 0.00 4.61
2567 2597 2.104170 GATCGGTTCTCTTCTCACCCT 58.896 52.381 0.00 0.00 0.00 4.34
2568 2598 1.257743 TCGGTTCTCTTCTCACCCTG 58.742 55.000 0.00 0.00 0.00 4.45
2569 2599 0.390472 CGGTTCTCTTCTCACCCTGC 60.390 60.000 0.00 0.00 0.00 4.85
2578 2608 0.687757 TCTCACCCTGCGCCTTCTAT 60.688 55.000 4.18 0.00 0.00 1.98
2624 2661 4.283467 TCATTTACCTATGCGGCTATGACT 59.717 41.667 0.00 0.00 35.61 3.41
2689 2950 8.702163 ACCAAGTACAATTTCTGTTTCTTTTG 57.298 30.769 0.00 0.00 39.64 2.44
2702 2963 6.321181 TCTGTTTCTTTTGTGTCCAAGCTATT 59.679 34.615 0.00 0.00 0.00 1.73
2715 2976 2.701951 CAAGCTATTTCCATGCCCCATT 59.298 45.455 0.00 0.00 0.00 3.16
2716 2977 2.601905 AGCTATTTCCATGCCCCATTC 58.398 47.619 0.00 0.00 0.00 2.67
2717 2978 2.178544 AGCTATTTCCATGCCCCATTCT 59.821 45.455 0.00 0.00 0.00 2.40
2718 2979 2.560105 GCTATTTCCATGCCCCATTCTC 59.440 50.000 0.00 0.00 0.00 2.87
2754 3016 2.743636 TCGACTGACCATCACCTTTC 57.256 50.000 0.00 0.00 0.00 2.62
2790 3052 3.478274 CCCTCCTGCTCCTCTGGC 61.478 72.222 0.00 0.00 34.13 4.85
2983 3245 2.183478 TGCAAACATCATGACCGAGT 57.817 45.000 0.00 0.00 0.00 4.18
2984 3246 2.503331 TGCAAACATCATGACCGAGTT 58.497 42.857 0.00 0.00 0.00 3.01
3123 3389 1.165907 TTTGCGGAGTGGCTGTTCAG 61.166 55.000 0.00 0.00 0.00 3.02
3125 3391 1.078848 GCGGAGTGGCTGTTCAGAT 60.079 57.895 3.84 0.00 0.00 2.90
3126 3392 1.086634 GCGGAGTGGCTGTTCAGATC 61.087 60.000 3.84 0.00 0.00 2.75
3131 3399 3.430098 GGAGTGGCTGTTCAGATCACTAG 60.430 52.174 20.08 0.00 38.60 2.57
3138 3406 6.039829 TGGCTGTTCAGATCACTAGTATACAG 59.960 42.308 5.50 3.46 34.97 2.74
3160 3428 0.821517 TGGTAAGCACATCGATCGGT 59.178 50.000 16.41 4.70 0.00 4.69
3179 3459 0.911769 TTGTACTGCTGCTAGCCCAT 59.088 50.000 13.29 3.10 41.51 4.00
3180 3460 0.178767 TGTACTGCTGCTAGCCCATG 59.821 55.000 13.29 2.81 41.51 3.66
3181 3461 0.533755 GTACTGCTGCTAGCCCATGG 60.534 60.000 13.29 4.14 41.51 3.66
3182 3462 0.982852 TACTGCTGCTAGCCCATGGT 60.983 55.000 13.29 7.33 41.51 3.55
3183 3463 1.077212 CTGCTGCTAGCCCATGGTT 60.077 57.895 13.29 0.66 41.51 3.67
3184 3464 0.682209 CTGCTGCTAGCCCATGGTTT 60.682 55.000 13.29 0.26 41.51 3.27
3185 3465 0.623194 TGCTGCTAGCCCATGGTTTA 59.377 50.000 13.29 1.58 41.51 2.01
3186 3466 1.005332 TGCTGCTAGCCCATGGTTTAA 59.995 47.619 13.29 0.00 41.51 1.52
3187 3467 1.678101 GCTGCTAGCCCATGGTTTAAG 59.322 52.381 13.29 3.71 34.48 1.85
3188 3468 2.945890 GCTGCTAGCCCATGGTTTAAGT 60.946 50.000 13.29 0.00 34.48 2.24
3189 3469 3.684413 GCTGCTAGCCCATGGTTTAAGTA 60.684 47.826 13.29 1.42 34.48 2.24
3190 3470 4.523083 CTGCTAGCCCATGGTTTAAGTAA 58.477 43.478 13.29 0.00 0.00 2.24
3203 3483 7.011499 TGGTTTAAGTAATGGTTAGCTCTCA 57.989 36.000 0.00 0.00 0.00 3.27
3266 3546 3.674753 GTGTTTATTGCAGTTGACCATGC 59.325 43.478 0.00 0.00 42.86 4.06
3270 3550 1.246649 TTGCAGTTGACCATGCGATT 58.753 45.000 0.00 0.00 45.54 3.34
3356 3636 6.006449 ACTTAGCACACATCTTGAGGAAAAT 58.994 36.000 0.00 0.00 0.00 1.82
3366 3646 8.834465 CACATCTTGAGGAAAATTATACTCTGG 58.166 37.037 0.00 0.00 0.00 3.86
3587 3888 7.799447 TGTTGTAAATGTTTAGATCGTTTTCGG 59.201 33.333 0.00 0.00 44.25 4.30
3687 3988 7.941919 ACTATCTCCAACTCCTTTTGAAAAAC 58.058 34.615 0.00 0.00 0.00 2.43
3688 3989 5.592104 TCTCCAACTCCTTTTGAAAAACC 57.408 39.130 0.00 0.00 0.00 3.27
3701 4002 8.515414 CCTTTTGAAAAACCTTACCATCTCTAG 58.485 37.037 0.00 0.00 0.00 2.43
3734 4035 5.241285 TGCACTTGTTTATCAGAGCATTTGA 59.759 36.000 0.00 0.00 0.00 2.69
3744 4045 5.745312 TCAGAGCATTTGACTTTCTAGGA 57.255 39.130 0.00 0.00 0.00 2.94
3759 4060 7.186268 ACTTTCTAGGACCTCTCTGATTTACT 58.814 38.462 0.00 0.00 0.00 2.24
3760 4061 7.123547 ACTTTCTAGGACCTCTCTGATTTACTG 59.876 40.741 0.00 0.00 0.00 2.74
3770 4071 7.040823 ACCTCTCTGATTTACTGCTTCTTTTTG 60.041 37.037 0.00 0.00 0.00 2.44
3771 4072 7.206981 TCTCTGATTTACTGCTTCTTTTTGG 57.793 36.000 0.00 0.00 0.00 3.28
3791 4092 2.315901 GTGCAGCGTTCATAAAACACC 58.684 47.619 0.00 0.00 0.00 4.16
3803 4104 8.837059 CGTTCATAAAACACCGAAATAGAAAAG 58.163 33.333 0.00 0.00 0.00 2.27
3974 4277 8.904099 ATCCAGTTAATTTAAGGAATACCGAG 57.096 34.615 2.32 0.00 41.83 4.63
4021 4324 6.656270 TGATCAAACTGCTCACAAAGTATGAT 59.344 34.615 0.00 0.00 0.00 2.45
4079 4382 4.248859 CCAACACAAAACAACCACAATCA 58.751 39.130 0.00 0.00 0.00 2.57
4086 4389 3.518634 AACAACCACAATCACCAACAC 57.481 42.857 0.00 0.00 0.00 3.32
4164 4467 7.145323 GCAACACCTAAAACACATTAATGACT 58.855 34.615 22.16 3.30 0.00 3.41
4208 4511 0.468226 ACCGCCGGTCATACATTGAT 59.532 50.000 1.02 0.00 36.54 2.57
4210 4513 2.288825 ACCGCCGGTCATACATTGATAG 60.289 50.000 1.02 0.00 36.54 2.08
4221 4524 7.445402 GGTCATACATTGATAGTGCATAAACCT 59.555 37.037 0.00 0.00 36.54 3.50
4234 4537 3.118665 GCATAAACCTGTCGGTACCCTTA 60.119 47.826 6.25 0.00 44.73 2.69
4261 4564 0.957395 AGCGAACATGGCCAGAAGTG 60.957 55.000 13.05 7.12 0.00 3.16
4270 4573 1.219124 GCCAGAAGTGCCAGATCGA 59.781 57.895 0.00 0.00 0.00 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 3.200887 GATCGAGGCCGCAGATCGT 62.201 63.158 19.29 6.04 37.69 3.73
69 70 3.030168 ATTGGTGATCGAGGCCGCA 62.030 57.895 7.44 0.00 35.37 5.69
77 78 1.835483 GCCTAGCGCATTGGTGATCG 61.835 60.000 11.47 0.00 37.47 3.69
96 97 1.742768 GAGGTAGTGGAGGATGCGG 59.257 63.158 0.00 0.00 0.00 5.69
137 138 1.677637 GACGACCCTTGAGCCCTAGG 61.678 65.000 0.06 0.06 35.46 3.02
138 139 1.817209 GACGACCCTTGAGCCCTAG 59.183 63.158 0.00 0.00 0.00 3.02
139 140 2.050350 CGACGACCCTTGAGCCCTA 61.050 63.158 0.00 0.00 0.00 3.53
140 141 3.382832 CGACGACCCTTGAGCCCT 61.383 66.667 0.00 0.00 0.00 5.19
141 142 3.692406 ACGACGACCCTTGAGCCC 61.692 66.667 0.00 0.00 0.00 5.19
142 143 2.432628 CACGACGACCCTTGAGCC 60.433 66.667 0.00 0.00 0.00 4.70
143 144 1.733399 GACACGACGACCCTTGAGC 60.733 63.158 0.00 0.00 0.00 4.26
144 145 1.080705 GGACACGACGACCCTTGAG 60.081 63.158 0.00 0.00 0.00 3.02
145 146 1.393487 TTGGACACGACGACCCTTGA 61.393 55.000 0.00 0.00 0.00 3.02
146 147 0.944311 CTTGGACACGACGACCCTTG 60.944 60.000 0.00 0.00 0.00 3.61
147 148 1.366366 CTTGGACACGACGACCCTT 59.634 57.895 0.00 0.00 0.00 3.95
148 149 2.571216 CCTTGGACACGACGACCCT 61.571 63.158 0.00 0.00 0.00 4.34
149 150 2.048503 CCTTGGACACGACGACCC 60.049 66.667 0.00 0.00 0.00 4.46
150 151 1.080705 CTCCTTGGACACGACGACC 60.081 63.158 0.00 2.64 0.00 4.79
151 152 1.080705 CCTCCTTGGACACGACGAC 60.081 63.158 0.00 0.00 38.35 4.34
152 153 0.824595 TTCCTCCTTGGACACGACGA 60.825 55.000 0.00 0.00 46.14 4.20
153 154 0.666577 GTTCCTCCTTGGACACGACG 60.667 60.000 0.00 0.00 46.14 5.12
154 155 0.391597 TGTTCCTCCTTGGACACGAC 59.608 55.000 0.00 0.00 46.14 4.34
155 156 0.679505 CTGTTCCTCCTTGGACACGA 59.320 55.000 0.00 0.00 46.14 4.35
156 157 0.320771 CCTGTTCCTCCTTGGACACG 60.321 60.000 0.00 0.00 46.14 4.49
157 158 0.606673 GCCTGTTCCTCCTTGGACAC 60.607 60.000 0.00 0.00 46.14 3.67
158 159 1.761174 GCCTGTTCCTCCTTGGACA 59.239 57.895 0.00 0.00 46.14 4.02
159 160 1.376037 CGCCTGTTCCTCCTTGGAC 60.376 63.158 0.00 0.00 46.14 4.02
160 161 2.592993 CCGCCTGTTCCTCCTTGGA 61.593 63.158 0.00 0.00 44.51 3.53
161 162 2.045926 CCGCCTGTTCCTCCTTGG 60.046 66.667 0.00 0.00 37.10 3.61
162 163 2.747855 GCCGCCTGTTCCTCCTTG 60.748 66.667 0.00 0.00 0.00 3.61
163 164 2.754664 CTTGCCGCCTGTTCCTCCTT 62.755 60.000 0.00 0.00 0.00 3.36
164 165 3.249189 TTGCCGCCTGTTCCTCCT 61.249 61.111 0.00 0.00 0.00 3.69
165 166 2.747855 CTTGCCGCCTGTTCCTCC 60.748 66.667 0.00 0.00 0.00 4.30
166 167 2.747855 CCTTGCCGCCTGTTCCTC 60.748 66.667 0.00 0.00 0.00 3.71
169 170 3.294493 TTGCCTTGCCGCCTGTTC 61.294 61.111 0.00 0.00 0.00 3.18
170 171 3.605664 GTTGCCTTGCCGCCTGTT 61.606 61.111 0.00 0.00 0.00 3.16
171 172 4.892965 TGTTGCCTTGCCGCCTGT 62.893 61.111 0.00 0.00 0.00 4.00
172 173 3.376078 ATGTTGCCTTGCCGCCTG 61.376 61.111 0.00 0.00 0.00 4.85
173 174 3.376078 CATGTTGCCTTGCCGCCT 61.376 61.111 0.00 0.00 0.00 5.52
178 179 2.321668 TATCGCGCATGTTGCCTTGC 62.322 55.000 8.75 0.00 41.12 4.01
179 180 0.308684 ATATCGCGCATGTTGCCTTG 59.691 50.000 8.75 0.00 41.12 3.61
180 181 0.308684 CATATCGCGCATGTTGCCTT 59.691 50.000 8.75 0.00 41.12 4.35
181 182 0.532640 TCATATCGCGCATGTTGCCT 60.533 50.000 8.75 0.00 41.12 4.75
182 183 0.110509 CTCATATCGCGCATGTTGCC 60.111 55.000 8.75 0.00 41.12 4.52
183 184 0.723790 GCTCATATCGCGCATGTTGC 60.724 55.000 8.75 16.95 40.69 4.17
184 185 0.449993 CGCTCATATCGCGCATGTTG 60.450 55.000 8.75 12.84 44.33 3.33
185 186 1.855338 CGCTCATATCGCGCATGTT 59.145 52.632 8.75 0.00 44.33 2.71
186 187 3.542369 CGCTCATATCGCGCATGT 58.458 55.556 8.75 0.00 44.33 3.21
192 193 2.671177 ATTGCGCCGCTCATATCGC 61.671 57.895 11.67 0.00 46.78 4.58
193 194 1.131218 CATTGCGCCGCTCATATCG 59.869 57.895 11.67 0.00 0.00 2.92
194 195 1.154338 GCATTGCGCCGCTCATATC 60.154 57.895 11.67 0.00 32.94 1.63
195 196 2.949106 GCATTGCGCCGCTCATAT 59.051 55.556 11.67 0.00 32.94 1.78
222 223 1.741401 TGACTTGGCGAATGCGGAG 60.741 57.895 0.00 0.00 44.10 4.63
223 224 2.032634 GTGACTTGGCGAATGCGGA 61.033 57.895 0.00 0.00 44.10 5.54
224 225 2.324330 TGTGACTTGGCGAATGCGG 61.324 57.895 0.00 0.00 44.10 5.69
225 226 1.154413 GTGTGACTTGGCGAATGCG 60.154 57.895 0.00 0.00 44.10 4.73
226 227 1.154413 CGTGTGACTTGGCGAATGC 60.154 57.895 0.00 0.00 41.71 3.56
227 228 1.154413 GCGTGTGACTTGGCGAATG 60.154 57.895 0.00 0.00 0.00 2.67
228 229 2.325082 GGCGTGTGACTTGGCGAAT 61.325 57.895 0.00 0.00 0.00 3.34
229 230 2.970324 GGCGTGTGACTTGGCGAA 60.970 61.111 0.00 0.00 0.00 4.70
230 231 4.228567 TGGCGTGTGACTTGGCGA 62.229 61.111 0.00 0.00 0.00 5.54
231 232 4.012895 GTGGCGTGTGACTTGGCG 62.013 66.667 0.00 0.00 0.00 5.69
232 233 4.012895 CGTGGCGTGTGACTTGGC 62.013 66.667 0.00 0.00 0.00 4.52
233 234 4.012895 GCGTGGCGTGTGACTTGG 62.013 66.667 0.00 0.00 0.00 3.61
234 235 4.012895 GGCGTGGCGTGTGACTTG 62.013 66.667 0.00 0.00 0.00 3.16
240 241 2.018727 TATATTCCGGCGTGGCGTGT 62.019 55.000 14.80 2.99 37.80 4.49
241 242 0.876777 TTATATTCCGGCGTGGCGTG 60.877 55.000 14.80 6.53 37.80 5.34
242 243 0.034337 ATTATATTCCGGCGTGGCGT 59.966 50.000 14.80 0.00 37.80 5.68
243 244 1.153353 AATTATATTCCGGCGTGGCG 58.847 50.000 6.01 9.03 37.80 5.69
244 245 3.636282 AAAATTATATTCCGGCGTGGC 57.364 42.857 6.01 0.00 37.80 5.01
245 246 5.934935 ACTAAAATTATATTCCGGCGTGG 57.065 39.130 6.01 0.00 40.09 4.94
246 247 7.647907 ACTACTAAAATTATATTCCGGCGTG 57.352 36.000 6.01 0.00 0.00 5.34
247 248 9.415544 CTAACTACTAAAATTATATTCCGGCGT 57.584 33.333 6.01 0.00 0.00 5.68
248 249 9.630098 TCTAACTACTAAAATTATATTCCGGCG 57.370 33.333 0.00 0.00 0.00 6.46
264 265 9.502091 ACAAATGCAAGTTCATTCTAACTACTA 57.498 29.630 0.00 0.00 38.76 1.82
265 266 8.396272 ACAAATGCAAGTTCATTCTAACTACT 57.604 30.769 0.00 0.00 38.76 2.57
266 267 9.463443 AAACAAATGCAAGTTCATTCTAACTAC 57.537 29.630 0.00 0.00 38.76 2.73
268 269 9.463443 GTAAACAAATGCAAGTTCATTCTAACT 57.537 29.630 0.00 0.00 41.46 2.24
269 270 9.463443 AGTAAACAAATGCAAGTTCATTCTAAC 57.537 29.630 0.00 0.00 35.77 2.34
272 273 9.066892 TCTAGTAAACAAATGCAAGTTCATTCT 57.933 29.630 0.00 0.00 35.77 2.40
273 274 9.846248 ATCTAGTAAACAAATGCAAGTTCATTC 57.154 29.630 0.00 0.00 35.77 2.67
276 277 8.946085 CCTATCTAGTAAACAAATGCAAGTTCA 58.054 33.333 0.00 0.00 0.00 3.18
277 278 9.162764 TCCTATCTAGTAAACAAATGCAAGTTC 57.837 33.333 0.00 0.00 0.00 3.01
278 279 8.947115 GTCCTATCTAGTAAACAAATGCAAGTT 58.053 33.333 0.00 0.00 0.00 2.66
279 280 8.322091 AGTCCTATCTAGTAAACAAATGCAAGT 58.678 33.333 0.00 0.00 0.00 3.16
280 281 8.723942 AGTCCTATCTAGTAAACAAATGCAAG 57.276 34.615 0.00 0.00 0.00 4.01
281 282 8.318412 TGAGTCCTATCTAGTAAACAAATGCAA 58.682 33.333 0.00 0.00 0.00 4.08
282 283 7.847096 TGAGTCCTATCTAGTAAACAAATGCA 58.153 34.615 0.00 0.00 0.00 3.96
283 284 8.718102 TTGAGTCCTATCTAGTAAACAAATGC 57.282 34.615 0.00 0.00 0.00 3.56
288 289 9.653287 CATTGTTTGAGTCCTATCTAGTAAACA 57.347 33.333 0.00 0.00 35.68 2.83
289 290 9.654663 ACATTGTTTGAGTCCTATCTAGTAAAC 57.345 33.333 0.00 0.00 0.00 2.01
297 298 9.573133 CCAAATAAACATTGTTTGAGTCCTATC 57.427 33.333 22.04 0.00 42.24 2.08
298 299 9.088987 ACCAAATAAACATTGTTTGAGTCCTAT 57.911 29.630 22.04 5.52 42.24 2.57
299 300 8.472007 ACCAAATAAACATTGTTTGAGTCCTA 57.528 30.769 22.04 3.45 42.24 2.94
300 301 7.360113 ACCAAATAAACATTGTTTGAGTCCT 57.640 32.000 22.04 0.00 42.24 3.85
301 302 8.357402 AGTACCAAATAAACATTGTTTGAGTCC 58.643 33.333 22.04 5.96 42.24 3.85
302 303 9.180678 CAGTACCAAATAAACATTGTTTGAGTC 57.819 33.333 22.04 6.91 42.24 3.36
303 304 7.651704 GCAGTACCAAATAAACATTGTTTGAGT 59.348 33.333 22.04 14.17 42.24 3.41
304 305 7.651304 TGCAGTACCAAATAAACATTGTTTGAG 59.349 33.333 22.04 10.32 42.24 3.02
305 306 7.436673 GTGCAGTACCAAATAAACATTGTTTGA 59.563 33.333 22.04 8.85 42.24 2.69
306 307 7.223582 TGTGCAGTACCAAATAAACATTGTTTG 59.776 33.333 22.04 9.42 40.22 2.93
307 308 7.268586 TGTGCAGTACCAAATAAACATTGTTT 58.731 30.769 18.13 18.13 0.00 2.83
308 309 6.810911 TGTGCAGTACCAAATAAACATTGTT 58.189 32.000 0.00 0.00 0.00 2.83
309 310 6.398234 TGTGCAGTACCAAATAAACATTGT 57.602 33.333 0.00 0.00 0.00 2.71
310 311 6.867816 ACATGTGCAGTACCAAATAAACATTG 59.132 34.615 0.00 0.00 0.00 2.82
311 312 6.991938 ACATGTGCAGTACCAAATAAACATT 58.008 32.000 0.00 0.00 0.00 2.71
312 313 6.588719 ACATGTGCAGTACCAAATAAACAT 57.411 33.333 0.00 0.00 0.00 2.71
313 314 6.183360 ACAACATGTGCAGTACCAAATAAACA 60.183 34.615 0.00 0.00 0.00 2.83
314 315 6.143758 CACAACATGTGCAGTACCAAATAAAC 59.856 38.462 0.00 0.00 41.89 2.01
315 316 6.212235 CACAACATGTGCAGTACCAAATAAA 58.788 36.000 0.00 0.00 41.89 1.40
316 317 5.767269 CACAACATGTGCAGTACCAAATAA 58.233 37.500 0.00 0.00 41.89 1.40
317 318 5.369685 CACAACATGTGCAGTACCAAATA 57.630 39.130 0.00 0.00 41.89 1.40
318 319 4.241590 CACAACATGTGCAGTACCAAAT 57.758 40.909 0.00 0.00 41.89 2.32
319 320 3.706802 CACAACATGTGCAGTACCAAA 57.293 42.857 0.00 0.00 41.89 3.28
330 331 6.095580 TGTTTACCACACATTACACAACATGT 59.904 34.615 0.00 0.00 46.06 3.21
331 332 6.499172 TGTTTACCACACATTACACAACATG 58.501 36.000 0.00 0.00 0.00 3.21
332 333 6.701145 TGTTTACCACACATTACACAACAT 57.299 33.333 0.00 0.00 0.00 2.71
333 334 6.095580 ACATGTTTACCACACATTACACAACA 59.904 34.615 0.00 0.00 38.61 3.33
334 335 6.500041 ACATGTTTACCACACATTACACAAC 58.500 36.000 0.00 0.00 38.61 3.32
335 336 6.544197 AGACATGTTTACCACACATTACACAA 59.456 34.615 0.00 0.00 38.61 3.33
336 337 6.058833 AGACATGTTTACCACACATTACACA 58.941 36.000 0.00 0.00 38.61 3.72
337 338 6.554334 AGACATGTTTACCACACATTACAC 57.446 37.500 0.00 0.00 38.61 2.90
338 339 7.217906 TGTAGACATGTTTACCACACATTACA 58.782 34.615 20.43 1.44 38.61 2.41
339 340 7.661127 TGTAGACATGTTTACCACACATTAC 57.339 36.000 20.43 0.00 38.61 1.89
340 341 7.715686 TGTTGTAGACATGTTTACCACACATTA 59.284 33.333 22.22 6.53 38.61 1.90
341 342 6.544197 TGTTGTAGACATGTTTACCACACATT 59.456 34.615 22.22 0.00 38.61 2.71
342 343 6.058833 TGTTGTAGACATGTTTACCACACAT 58.941 36.000 22.22 0.00 38.61 3.21
343 344 5.429130 TGTTGTAGACATGTTTACCACACA 58.571 37.500 22.22 18.10 38.61 3.72
344 345 5.994887 TGTTGTAGACATGTTTACCACAC 57.005 39.130 22.22 16.37 38.61 3.82
356 357 4.817318 TGCATGGTCTATGTTGTAGACA 57.183 40.909 14.91 4.46 44.18 3.41
357 358 6.202954 GGTTATGCATGGTCTATGTTGTAGAC 59.797 42.308 10.16 6.66 42.28 2.59
358 359 6.126911 TGGTTATGCATGGTCTATGTTGTAGA 60.127 38.462 10.16 0.00 39.08 2.59
359 360 6.054941 TGGTTATGCATGGTCTATGTTGTAG 58.945 40.000 10.16 0.00 39.08 2.74
360 361 5.995446 TGGTTATGCATGGTCTATGTTGTA 58.005 37.500 10.16 0.00 39.08 2.41
361 362 4.854173 TGGTTATGCATGGTCTATGTTGT 58.146 39.130 10.16 0.00 39.08 3.32
362 363 5.833406 TTGGTTATGCATGGTCTATGTTG 57.167 39.130 10.16 0.00 39.08 3.33
363 364 5.163663 CGTTTGGTTATGCATGGTCTATGTT 60.164 40.000 10.16 0.00 39.08 2.71
364 365 4.335315 CGTTTGGTTATGCATGGTCTATGT 59.665 41.667 10.16 0.00 39.08 2.29
365 366 4.335315 ACGTTTGGTTATGCATGGTCTATG 59.665 41.667 10.16 0.00 39.88 2.23
366 367 4.523083 ACGTTTGGTTATGCATGGTCTAT 58.477 39.130 10.16 0.00 0.00 1.98
367 368 3.936453 GACGTTTGGTTATGCATGGTCTA 59.064 43.478 10.16 0.00 0.00 2.59
368 369 2.747446 GACGTTTGGTTATGCATGGTCT 59.253 45.455 10.16 0.00 0.00 3.85
369 370 2.486203 TGACGTTTGGTTATGCATGGTC 59.514 45.455 10.16 4.58 0.00 4.02
370 371 2.509569 TGACGTTTGGTTATGCATGGT 58.490 42.857 10.16 0.00 0.00 3.55
371 372 3.119531 ACATGACGTTTGGTTATGCATGG 60.120 43.478 10.16 0.00 44.22 3.66
372 373 4.095410 ACATGACGTTTGGTTATGCATG 57.905 40.909 10.16 0.00 44.22 4.06
373 374 4.782019 AACATGACGTTTGGTTATGCAT 57.218 36.364 3.79 3.79 44.22 3.96
374 375 4.576216 AAACATGACGTTTGGTTATGCA 57.424 36.364 0.00 0.00 46.22 3.96
386 387 4.611984 TGTTAACGTACGAAACATGACG 57.388 40.909 25.80 0.00 41.02 4.35
387 388 5.132576 GGTTGTTAACGTACGAAACATGAC 58.867 41.667 28.17 24.53 33.44 3.06
388 389 4.085158 CGGTTGTTAACGTACGAAACATGA 60.085 41.667 28.17 18.29 33.44 3.07
389 390 4.135966 CGGTTGTTAACGTACGAAACATG 58.864 43.478 28.17 20.78 33.44 3.21
390 391 3.801594 ACGGTTGTTAACGTACGAAACAT 59.198 39.130 28.17 17.55 42.15 2.71
391 392 3.182967 ACGGTTGTTAACGTACGAAACA 58.817 40.909 25.80 25.80 42.15 2.83
392 393 3.834435 ACGGTTGTTAACGTACGAAAC 57.166 42.857 24.41 23.20 42.15 2.78
393 394 3.423867 GCTACGGTTGTTAACGTACGAAA 59.576 43.478 24.41 12.80 43.79 3.46
394 395 2.977169 GCTACGGTTGTTAACGTACGAA 59.023 45.455 24.41 6.63 43.79 3.85
395 396 2.031595 TGCTACGGTTGTTAACGTACGA 60.032 45.455 24.41 0.00 43.79 3.43
396 397 2.088969 GTGCTACGGTTGTTAACGTACG 59.911 50.000 15.01 15.01 43.79 3.67
397 398 3.049206 TGTGCTACGGTTGTTAACGTAC 58.951 45.455 0.26 1.78 43.79 3.67
398 399 3.361794 TGTGCTACGGTTGTTAACGTA 57.638 42.857 0.26 0.00 43.79 3.57
399 400 2.222007 TGTGCTACGGTTGTTAACGT 57.778 45.000 0.26 0.00 46.17 3.99
400 401 4.150274 TGTTATGTGCTACGGTTGTTAACG 59.850 41.667 0.26 0.00 0.00 3.18
401 402 5.594724 TGTTATGTGCTACGGTTGTTAAC 57.405 39.130 0.00 0.00 0.00 2.01
402 403 6.804770 ATTGTTATGTGCTACGGTTGTTAA 57.195 33.333 0.00 0.00 0.00 2.01
403 404 6.205076 ACAATTGTTATGTGCTACGGTTGTTA 59.795 34.615 4.92 0.00 0.00 2.41
404 405 5.009210 ACAATTGTTATGTGCTACGGTTGTT 59.991 36.000 4.92 0.00 0.00 2.83
405 406 4.517453 ACAATTGTTATGTGCTACGGTTGT 59.483 37.500 4.92 0.00 0.00 3.32
406 407 5.041951 ACAATTGTTATGTGCTACGGTTG 57.958 39.130 4.92 0.00 0.00 3.77
407 408 4.757657 TGACAATTGTTATGTGCTACGGTT 59.242 37.500 13.36 0.00 0.00 4.44
408 409 4.320023 TGACAATTGTTATGTGCTACGGT 58.680 39.130 13.36 0.00 0.00 4.83
409 410 4.937696 TGACAATTGTTATGTGCTACGG 57.062 40.909 13.36 0.00 0.00 4.02
410 411 5.086058 GGTTGACAATTGTTATGTGCTACG 58.914 41.667 13.36 0.00 0.00 3.51
411 412 6.007936 TGGTTGACAATTGTTATGTGCTAC 57.992 37.500 13.36 5.73 0.00 3.58
412 413 6.641169 TTGGTTGACAATTGTTATGTGCTA 57.359 33.333 13.36 0.00 33.18 3.49
413 414 5.528043 TTGGTTGACAATTGTTATGTGCT 57.472 34.783 13.36 0.00 33.18 4.40
414 415 5.521735 TGTTTGGTTGACAATTGTTATGTGC 59.478 36.000 13.36 0.00 39.21 4.57
415 416 7.712264 ATGTTTGGTTGACAATTGTTATGTG 57.288 32.000 13.36 0.00 39.21 3.21
416 417 9.255304 GTAATGTTTGGTTGACAATTGTTATGT 57.745 29.630 13.36 0.00 39.21 2.29
417 418 8.423973 CGTAATGTTTGGTTGACAATTGTTATG 58.576 33.333 13.36 0.00 39.21 1.90
418 419 8.138712 ACGTAATGTTTGGTTGACAATTGTTAT 58.861 29.630 13.36 0.00 39.21 1.89
419 420 7.481642 ACGTAATGTTTGGTTGACAATTGTTA 58.518 30.769 13.36 5.62 39.21 2.41
420 421 6.334202 ACGTAATGTTTGGTTGACAATTGTT 58.666 32.000 13.36 0.00 39.21 2.83
421 422 5.897050 ACGTAATGTTTGGTTGACAATTGT 58.103 33.333 11.78 11.78 39.21 2.71
422 423 7.805542 TCATACGTAATGTTTGGTTGACAATTG 59.194 33.333 3.24 3.24 35.07 2.32
423 424 7.877003 TCATACGTAATGTTTGGTTGACAATT 58.123 30.769 0.00 0.00 35.07 2.32
424 425 7.441890 TCATACGTAATGTTTGGTTGACAAT 57.558 32.000 0.00 0.00 35.07 2.71
425 426 6.862711 TCATACGTAATGTTTGGTTGACAA 57.137 33.333 0.00 0.00 36.89 3.18
426 427 6.862711 TTCATACGTAATGTTTGGTTGACA 57.137 33.333 0.00 0.00 36.89 3.58
427 428 7.322699 CAGTTTCATACGTAATGTTTGGTTGAC 59.677 37.037 0.00 0.00 36.89 3.18
428 429 7.356540 CAGTTTCATACGTAATGTTTGGTTGA 58.643 34.615 0.00 0.00 36.89 3.18
429 430 6.087555 GCAGTTTCATACGTAATGTTTGGTTG 59.912 38.462 0.00 0.00 36.89 3.77
430 431 6.016610 AGCAGTTTCATACGTAATGTTTGGTT 60.017 34.615 0.00 0.00 36.89 3.67
431 432 5.472137 AGCAGTTTCATACGTAATGTTTGGT 59.528 36.000 0.00 0.00 36.89 3.67
432 433 5.938322 AGCAGTTTCATACGTAATGTTTGG 58.062 37.500 0.00 0.00 36.89 3.28
433 434 6.598525 TGAGCAGTTTCATACGTAATGTTTG 58.401 36.000 0.00 0.00 36.89 2.93
434 435 6.426937 ACTGAGCAGTTTCATACGTAATGTTT 59.573 34.615 0.00 0.00 38.83 2.83
435 436 5.932303 ACTGAGCAGTTTCATACGTAATGTT 59.068 36.000 0.00 0.00 38.83 2.71
436 437 5.348724 CACTGAGCAGTTTCATACGTAATGT 59.651 40.000 0.00 0.00 40.20 2.71
437 438 5.576774 TCACTGAGCAGTTTCATACGTAATG 59.423 40.000 0.00 0.00 40.20 1.90
438 439 5.720202 TCACTGAGCAGTTTCATACGTAAT 58.280 37.500 0.00 0.00 40.20 1.89
439 440 5.128992 TCACTGAGCAGTTTCATACGTAA 57.871 39.130 0.00 0.00 40.20 3.18
440 441 4.776795 TCACTGAGCAGTTTCATACGTA 57.223 40.909 0.00 0.00 40.20 3.57
441 442 3.660501 TCACTGAGCAGTTTCATACGT 57.339 42.857 0.00 0.00 40.20 3.57
442 443 3.242220 GCATCACTGAGCAGTTTCATACG 60.242 47.826 0.00 0.00 40.20 3.06
443 444 3.064545 GGCATCACTGAGCAGTTTCATAC 59.935 47.826 0.00 0.00 40.20 2.39
444 445 3.273434 GGCATCACTGAGCAGTTTCATA 58.727 45.455 0.00 0.00 40.20 2.15
445 446 2.089980 GGCATCACTGAGCAGTTTCAT 58.910 47.619 0.00 0.00 40.20 2.57
446 447 1.527034 GGCATCACTGAGCAGTTTCA 58.473 50.000 0.00 0.00 40.20 2.69
447 448 0.807496 GGGCATCACTGAGCAGTTTC 59.193 55.000 0.00 0.00 40.20 2.78
448 449 0.403271 AGGGCATCACTGAGCAGTTT 59.597 50.000 0.00 0.00 40.20 2.66
449 450 0.322277 CAGGGCATCACTGAGCAGTT 60.322 55.000 0.00 0.00 40.20 3.16
450 451 1.298993 CAGGGCATCACTGAGCAGT 59.701 57.895 0.00 0.00 43.61 4.40
451 452 2.113433 GCAGGGCATCACTGAGCAG 61.113 63.158 0.00 0.00 38.20 4.24
452 453 2.045634 GCAGGGCATCACTGAGCA 60.046 61.111 0.00 0.00 38.20 4.26
453 454 2.045634 TGCAGGGCATCACTGAGC 60.046 61.111 0.00 0.00 38.20 4.26
454 455 0.743701 GTCTGCAGGGCATCACTGAG 60.744 60.000 15.13 0.00 38.13 3.35
455 456 1.196766 AGTCTGCAGGGCATCACTGA 61.197 55.000 15.13 0.00 38.13 3.41
456 457 0.538584 TAGTCTGCAGGGCATCACTG 59.461 55.000 15.13 0.00 38.13 3.66
457 458 0.539051 GTAGTCTGCAGGGCATCACT 59.461 55.000 15.13 11.19 38.13 3.41
458 459 0.250234 TGTAGTCTGCAGGGCATCAC 59.750 55.000 15.13 3.09 38.13 3.06
459 460 0.983467 TTGTAGTCTGCAGGGCATCA 59.017 50.000 15.13 4.76 38.13 3.07
460 461 2.113860 TTTGTAGTCTGCAGGGCATC 57.886 50.000 15.13 2.10 38.13 3.91
461 462 2.162681 GTTTTGTAGTCTGCAGGGCAT 58.837 47.619 15.13 0.00 38.13 4.40
462 463 1.142870 AGTTTTGTAGTCTGCAGGGCA 59.857 47.619 15.13 5.15 36.92 5.36
463 464 1.897560 AGTTTTGTAGTCTGCAGGGC 58.102 50.000 15.13 7.50 0.00 5.19
464 465 5.237344 GCATATAGTTTTGTAGTCTGCAGGG 59.763 44.000 15.13 0.00 0.00 4.45
465 466 5.817296 TGCATATAGTTTTGTAGTCTGCAGG 59.183 40.000 15.13 0.00 33.58 4.85
466 467 6.908870 TGCATATAGTTTTGTAGTCTGCAG 57.091 37.500 7.63 7.63 33.58 4.41
467 468 7.680442 TTTGCATATAGTTTTGTAGTCTGCA 57.320 32.000 0.00 0.00 35.50 4.41
468 469 8.020819 TGTTTTGCATATAGTTTTGTAGTCTGC 58.979 33.333 0.00 0.00 0.00 4.26
480 481 9.889128 AGCCAAAAATTATGTTTTGCATATAGT 57.111 25.926 6.68 0.00 43.91 2.12
483 484 9.012161 ACAAGCCAAAAATTATGTTTTGCATAT 57.988 25.926 6.68 0.00 43.91 1.78
484 485 8.388484 ACAAGCCAAAAATTATGTTTTGCATA 57.612 26.923 6.68 0.00 43.91 3.14
485 486 7.274603 ACAAGCCAAAAATTATGTTTTGCAT 57.725 28.000 6.68 0.00 43.91 3.96
486 487 6.690194 ACAAGCCAAAAATTATGTTTTGCA 57.310 29.167 6.68 0.00 43.91 4.08
487 488 9.328721 GAATACAAGCCAAAAATTATGTTTTGC 57.671 29.630 5.14 0.00 43.91 3.68
490 491 9.777297 AGTGAATACAAGCCAAAAATTATGTTT 57.223 25.926 0.00 0.00 0.00 2.83
491 492 9.423061 GAGTGAATACAAGCCAAAAATTATGTT 57.577 29.630 0.00 0.00 0.00 2.71
492 493 8.584157 TGAGTGAATACAAGCCAAAAATTATGT 58.416 29.630 0.00 0.00 0.00 2.29
493 494 8.984891 TGAGTGAATACAAGCCAAAAATTATG 57.015 30.769 0.00 0.00 0.00 1.90
494 495 9.423061 GTTGAGTGAATACAAGCCAAAAATTAT 57.577 29.630 0.00 0.00 0.00 1.28
495 496 7.593273 CGTTGAGTGAATACAAGCCAAAAATTA 59.407 33.333 0.00 0.00 0.00 1.40
496 497 6.420604 CGTTGAGTGAATACAAGCCAAAAATT 59.579 34.615 0.00 0.00 0.00 1.82
497 498 5.920273 CGTTGAGTGAATACAAGCCAAAAAT 59.080 36.000 0.00 0.00 0.00 1.82
498 499 5.066634 TCGTTGAGTGAATACAAGCCAAAAA 59.933 36.000 0.00 0.00 0.00 1.94
499 500 4.576873 TCGTTGAGTGAATACAAGCCAAAA 59.423 37.500 0.00 0.00 0.00 2.44
500 501 4.130857 TCGTTGAGTGAATACAAGCCAAA 58.869 39.130 0.00 0.00 0.00 3.28
501 502 3.734463 TCGTTGAGTGAATACAAGCCAA 58.266 40.909 0.00 0.00 0.00 4.52
502 503 3.006430 TCTCGTTGAGTGAATACAAGCCA 59.994 43.478 0.00 0.00 0.00 4.75
503 504 3.368236 GTCTCGTTGAGTGAATACAAGCC 59.632 47.826 0.00 0.00 0.00 4.35
504 505 3.987868 TGTCTCGTTGAGTGAATACAAGC 59.012 43.478 0.00 0.00 0.00 4.01
505 506 4.982295 TGTGTCTCGTTGAGTGAATACAAG 59.018 41.667 0.00 0.00 0.00 3.16
506 507 4.939271 TGTGTCTCGTTGAGTGAATACAA 58.061 39.130 0.00 0.00 0.00 2.41
507 508 4.577834 TGTGTCTCGTTGAGTGAATACA 57.422 40.909 0.00 0.00 0.00 2.29
508 509 4.982916 AGTTGTGTCTCGTTGAGTGAATAC 59.017 41.667 0.00 0.00 0.00 1.89
509 510 5.196341 AGTTGTGTCTCGTTGAGTGAATA 57.804 39.130 0.00 0.00 0.00 1.75
510 511 4.051922 GAGTTGTGTCTCGTTGAGTGAAT 58.948 43.478 0.00 0.00 0.00 2.57
511 512 3.444916 GAGTTGTGTCTCGTTGAGTGAA 58.555 45.455 0.00 0.00 0.00 3.18
512 513 3.079960 GAGTTGTGTCTCGTTGAGTGA 57.920 47.619 0.00 0.00 0.00 3.41
521 522 0.320771 ATGTGGCCGAGTTGTGTCTC 60.321 55.000 0.00 0.00 0.00 3.36
522 523 0.108585 AATGTGGCCGAGTTGTGTCT 59.891 50.000 0.00 0.00 0.00 3.41
523 524 0.951558 AAATGTGGCCGAGTTGTGTC 59.048 50.000 0.00 0.00 0.00 3.67
524 525 0.667993 CAAATGTGGCCGAGTTGTGT 59.332 50.000 0.00 0.00 0.00 3.72
525 526 0.664166 GCAAATGTGGCCGAGTTGTG 60.664 55.000 14.17 2.88 0.00 3.33
526 527 1.106351 TGCAAATGTGGCCGAGTTGT 61.106 50.000 14.17 0.00 0.00 3.32
527 528 0.031857 TTGCAAATGTGGCCGAGTTG 59.968 50.000 9.73 9.73 0.00 3.16
528 529 0.749649 TTTGCAAATGTGGCCGAGTT 59.250 45.000 8.05 0.00 0.00 3.01
529 530 0.968405 ATTTGCAAATGTGGCCGAGT 59.032 45.000 23.54 0.00 0.00 4.18
530 531 2.529151 GTATTTGCAAATGTGGCCGAG 58.471 47.619 30.43 0.00 0.00 4.63
531 532 1.203523 GGTATTTGCAAATGTGGCCGA 59.796 47.619 30.43 9.45 0.00 5.54
532 533 1.639280 GGTATTTGCAAATGTGGCCG 58.361 50.000 30.43 0.00 0.00 6.13
533 534 1.406751 GGGGTATTTGCAAATGTGGCC 60.407 52.381 30.43 24.06 0.00 5.36
534 535 1.277557 TGGGGTATTTGCAAATGTGGC 59.722 47.619 30.43 18.13 0.00 5.01
535 536 3.692257 TTGGGGTATTTGCAAATGTGG 57.308 42.857 30.43 0.00 0.00 4.17
536 537 4.084118 CGTTTTGGGGTATTTGCAAATGTG 60.084 41.667 30.43 7.46 0.00 3.21
537 538 4.061596 CGTTTTGGGGTATTTGCAAATGT 58.938 39.130 30.43 12.33 0.00 2.71
538 539 4.310769 TCGTTTTGGGGTATTTGCAAATG 58.689 39.130 30.43 12.54 0.00 2.32
539 540 4.608948 TCGTTTTGGGGTATTTGCAAAT 57.391 36.364 26.72 26.72 0.00 2.32
883 894 3.181475 ACGTATCTGACCAGGTTATGCTG 60.181 47.826 0.00 0.00 0.00 4.41
884 895 3.031736 ACGTATCTGACCAGGTTATGCT 58.968 45.455 0.00 0.00 0.00 3.79
965 976 0.951558 GAGCAAGACGCAAAAAGGGA 59.048 50.000 0.00 0.00 46.13 4.20
968 980 1.334869 ACCTGAGCAAGACGCAAAAAG 59.665 47.619 0.00 0.00 46.13 2.27
1449 1476 2.892425 GCACGATGGCGGAGAAGG 60.892 66.667 0.00 0.00 43.17 3.46
1726 1753 1.469767 CCGAGCGTGATGAAGTGATCA 60.470 52.381 0.00 0.00 43.67 2.92
1999 2026 3.119459 GCACATCTCTGAAGTCGTCCTTA 60.119 47.826 0.00 0.00 32.03 2.69
2014 2041 1.002888 CACTCCTCCAACAGCACATCT 59.997 52.381 0.00 0.00 0.00 2.90
2083 2110 0.310543 TGGCATTGTCGTTGCACTTC 59.689 50.000 0.00 0.00 41.95 3.01
2158 2185 4.183686 GACCGCCGCGTGTAGCTA 62.184 66.667 12.58 0.00 45.59 3.32
2247 2274 3.353836 CAACCGGCAGGAACCACG 61.354 66.667 10.86 0.00 41.02 4.94
2531 2561 3.254024 ATCGAGGCCACGCACCTTT 62.254 57.895 18.51 0.00 37.77 3.11
2566 2596 2.350522 ACAAGAACATAGAAGGCGCAG 58.649 47.619 10.83 0.00 0.00 5.18
2567 2597 2.472695 ACAAGAACATAGAAGGCGCA 57.527 45.000 10.83 0.00 0.00 6.09
2568 2598 3.831715 AAACAAGAACATAGAAGGCGC 57.168 42.857 0.00 0.00 0.00 6.53
2569 2599 5.613358 AGAAAACAAGAACATAGAAGGCG 57.387 39.130 0.00 0.00 0.00 5.52
2578 2608 7.881142 TGAAGAAACAGAAGAAAACAAGAACA 58.119 30.769 0.00 0.00 0.00 3.18
2624 2661 3.610040 AGTAACATTGATCGGCTCACA 57.390 42.857 0.00 0.00 32.17 3.58
2666 2927 9.139174 ACACAAAAGAAACAGAAATTGTACTTG 57.861 29.630 0.00 0.00 39.73 3.16
2689 2950 2.099756 GGCATGGAAATAGCTTGGACAC 59.900 50.000 0.00 0.00 0.00 3.67
2702 2963 2.566724 GTTTTGAGAATGGGGCATGGAA 59.433 45.455 0.00 0.00 0.00 3.53
2715 2976 4.458642 TCGATCAATGGCAATGTTTTGAGA 59.541 37.500 1.93 0.00 34.60 3.27
2716 2977 4.560035 GTCGATCAATGGCAATGTTTTGAG 59.440 41.667 1.93 0.00 34.60 3.02
2717 2978 4.218200 AGTCGATCAATGGCAATGTTTTGA 59.782 37.500 1.93 2.63 34.60 2.69
2718 2979 4.325204 CAGTCGATCAATGGCAATGTTTTG 59.675 41.667 1.93 0.00 35.85 2.44
2754 3016 2.280628 GGCCGTCTGTAGAAGATTTGG 58.719 52.381 0.00 0.00 37.23 3.28
2890 3152 1.136305 CAAAACGCCCTCCTCGATCTA 59.864 52.381 0.00 0.00 0.00 1.98
2983 3245 8.191446 TGGTGATCGAAAACAAGTATTTTTGAA 58.809 29.630 5.30 0.00 42.51 2.69
2984 3246 7.708051 TGGTGATCGAAAACAAGTATTTTTGA 58.292 30.769 0.00 3.94 43.09 2.69
3123 3389 4.832590 ACCACGCTGTATACTAGTGATC 57.167 45.455 19.85 0.00 35.03 2.92
3125 3391 4.036027 GCTTACCACGCTGTATACTAGTGA 59.964 45.833 19.85 0.00 35.03 3.41
3126 3392 4.201980 TGCTTACCACGCTGTATACTAGTG 60.202 45.833 5.39 10.78 0.00 2.74
3160 3428 0.911769 ATGGGCTAGCAGCAGTACAA 59.088 50.000 18.24 0.00 44.75 2.41
3179 3459 6.877322 GTGAGAGCTAACCATTACTTAAACCA 59.123 38.462 0.00 0.00 0.00 3.67
3180 3460 6.877322 TGTGAGAGCTAACCATTACTTAAACC 59.123 38.462 0.00 0.00 0.00 3.27
3181 3461 7.817962 TCTGTGAGAGCTAACCATTACTTAAAC 59.182 37.037 0.00 0.00 0.00 2.01
3182 3462 7.903145 TCTGTGAGAGCTAACCATTACTTAAA 58.097 34.615 0.00 0.00 0.00 1.52
3183 3463 7.476540 TCTGTGAGAGCTAACCATTACTTAA 57.523 36.000 0.00 0.00 0.00 1.85
3184 3464 7.661536 ATCTGTGAGAGCTAACCATTACTTA 57.338 36.000 0.00 0.00 0.00 2.24
3185 3465 6.552445 ATCTGTGAGAGCTAACCATTACTT 57.448 37.500 0.00 0.00 0.00 2.24
3186 3466 6.552445 AATCTGTGAGAGCTAACCATTACT 57.448 37.500 0.00 0.00 0.00 2.24
3187 3467 7.493367 ACTAATCTGTGAGAGCTAACCATTAC 58.507 38.462 0.00 0.00 0.00 1.89
3188 3468 7.661536 ACTAATCTGTGAGAGCTAACCATTA 57.338 36.000 0.00 0.00 0.00 1.90
3189 3469 6.552445 ACTAATCTGTGAGAGCTAACCATT 57.448 37.500 0.00 0.00 0.00 3.16
3190 3470 6.552445 AACTAATCTGTGAGAGCTAACCAT 57.448 37.500 0.00 0.00 0.00 3.55
3203 3483 5.227908 CACCGTCACAGTAAACTAATCTGT 58.772 41.667 0.00 0.00 42.14 3.41
3270 3550 3.585862 GTCTAGAACCTGCAACGAATCA 58.414 45.455 0.00 0.00 0.00 2.57
3414 3695 9.170734 GAAGTAAATAAAAACGGAGGGAGTAAT 57.829 33.333 0.00 0.00 0.00 1.89
3484 3785 7.747888 TGACTCGGTATTGTGATTGTTAATTG 58.252 34.615 0.00 0.00 0.00 2.32
3493 3794 5.607939 TGGTATTGACTCGGTATTGTGAT 57.392 39.130 0.00 0.00 0.00 3.06
3494 3795 5.607939 ATGGTATTGACTCGGTATTGTGA 57.392 39.130 0.00 0.00 0.00 3.58
3562 3863 7.799914 ACCGAAAACGATCTAAACATTTACAAC 59.200 33.333 0.00 0.00 0.00 3.32
3680 3981 7.974504 ACTTCTAGAGATGGTAAGGTTTTTCA 58.025 34.615 0.00 0.00 0.00 2.69
3687 3988 6.568869 CAGTCAACTTCTAGAGATGGTAAGG 58.431 44.000 0.00 0.00 0.00 2.69
3688 3989 6.039616 GCAGTCAACTTCTAGAGATGGTAAG 58.960 44.000 0.00 0.00 0.00 2.34
3701 4002 6.017934 TCTGATAAACAAGTGCAGTCAACTTC 60.018 38.462 0.00 0.00 0.00 3.01
3734 4035 7.123547 CAGTAAATCAGAGAGGTCCTAGAAAGT 59.876 40.741 0.00 0.00 0.00 2.66
3744 4045 5.753721 AAGAAGCAGTAAATCAGAGAGGT 57.246 39.130 0.00 0.00 0.00 3.85
3759 4060 0.248990 CGCTGCACCAAAAAGAAGCA 60.249 50.000 0.00 0.00 0.00 3.91
3760 4061 0.249031 ACGCTGCACCAAAAAGAAGC 60.249 50.000 0.00 0.00 0.00 3.86
3770 4071 2.315901 GTGTTTTATGAACGCTGCACC 58.684 47.619 0.00 0.00 0.00 5.01
3771 4072 2.315901 GGTGTTTTATGAACGCTGCAC 58.684 47.619 0.00 0.00 0.00 4.57
3791 4092 7.678194 TTTGTTCTTGCACTTTTCTATTTCG 57.322 32.000 0.00 0.00 0.00 3.46
3803 4104 7.009540 GCATACATTCCTATTTTGTTCTTGCAC 59.990 37.037 0.00 0.00 0.00 4.57
3908 4211 8.560576 AATTAATCGACGAGGCAAATATTTTG 57.439 30.769 3.01 0.00 0.00 2.44
3913 4216 8.651391 TTCTTAATTAATCGACGAGGCAAATA 57.349 30.769 3.01 0.00 0.00 1.40
3963 4266 2.100252 TCGATTTTCGCTCGGTATTCCT 59.900 45.455 0.00 0.00 40.21 3.36
3968 4271 4.862350 TGATTATCGATTTTCGCTCGGTA 58.138 39.130 1.71 0.00 40.21 4.02
3974 4277 6.649436 TCATTGTCTGATTATCGATTTTCGC 58.351 36.000 1.71 0.00 40.21 4.70
4021 4324 1.514678 GCATGTGCGGTTGTGGAGAA 61.515 55.000 0.00 0.00 0.00 2.87
4164 4467 1.537348 CGACTTGTCCTCGTGGTTTGA 60.537 52.381 2.99 0.00 34.23 2.69
4193 4496 3.727726 TGCACTATCAATGTATGACCGG 58.272 45.455 0.00 0.00 41.93 5.28
4234 4537 0.464452 GCCATGTTCGCTACCCTACT 59.536 55.000 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.