Multiple sequence alignment - TraesCS2B01G416500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G416500 chr2B 100.000 3434 0 0 1 3434 595371197 595367764 0.000000e+00 6342
1 TraesCS2B01G416500 chr2B 73.802 981 226 25 1401 2364 595578428 595579394 3.260000e-95 359
2 TraesCS2B01G416500 chr2A 92.470 2789 157 23 5 2777 651823431 651820680 0.000000e+00 3938
3 TraesCS2B01G416500 chr2A 75.080 939 202 28 1401 2320 651916171 651917096 3.190000e-110 409
4 TraesCS2B01G416500 chr2A 91.250 80 4 3 2777 2853 651820515 651820436 4.690000e-19 106
5 TraesCS2B01G416500 chr2D 93.555 2467 115 25 150 2610 507217534 507215106 0.000000e+00 3635
6 TraesCS2B01G416500 chr2D 88.734 719 63 11 2649 3351 507215109 507214393 0.000000e+00 863
7 TraesCS2B01G416500 chr2D 74.419 989 224 25 1401 2373 507259182 507260157 6.910000e-107 398
8 TraesCS2B01G416500 chr2D 79.581 191 29 6 395 583 10901078 10900896 1.000000e-25 128
9 TraesCS2B01G416500 chr4D 83.765 425 57 12 2936 3351 309927622 309927201 3.210000e-105 392
10 TraesCS2B01G416500 chr4D 91.176 102 9 0 3330 3431 120490115 120490014 4.620000e-29 139
11 TraesCS2B01G416500 chr5D 83.123 397 57 9 2964 3351 63264393 63263998 1.520000e-93 353
12 TraesCS2B01G416500 chr5D 81.301 369 55 13 2990 3348 158242770 158243134 1.560000e-73 287
13 TraesCS2B01G416500 chr5D 97.619 84 2 0 3348 3431 462537244 462537161 9.930000e-31 145
14 TraesCS2B01G416500 chr5D 96.512 86 3 0 3348 3433 118255916 118256001 3.570000e-30 143
15 TraesCS2B01G416500 chr7A 84.282 369 47 11 2990 3348 609170894 609171261 1.960000e-92 350
16 TraesCS2B01G416500 chr7A 82.143 420 62 11 2943 3351 36322015 36321598 7.050000e-92 348
17 TraesCS2B01G416500 chr3B 81.690 426 63 14 2937 3351 41476341 41475920 1.180000e-89 340
18 TraesCS2B01G416500 chr3B 83.200 125 21 0 424 548 789613008 789613132 7.790000e-22 115
19 TraesCS2B01G416500 chr4B 82.097 391 55 14 2972 3351 659621366 659620980 1.540000e-83 320
20 TraesCS2B01G416500 chr6D 80.841 428 61 17 2937 3349 262748153 262748574 1.990000e-82 316
21 TraesCS2B01G416500 chr7D 97.619 84 2 0 3349 3432 354139058 354139141 9.930000e-31 145
22 TraesCS2B01G416500 chr7D 97.590 83 2 0 3349 3431 531227437 531227519 3.570000e-30 143
23 TraesCS2B01G416500 chr7D 96.512 86 2 1 3348 3432 279102934 279102849 1.280000e-29 141
24 TraesCS2B01G416500 chr7D 96.471 85 3 0 3348 3432 494370773 494370857 1.280000e-29 141
25 TraesCS2B01G416500 chr3A 97.619 84 2 0 3349 3432 442612414 442612331 9.930000e-31 145
26 TraesCS2B01G416500 chr1D 96.471 85 3 0 3348 3432 96453372 96453288 1.280000e-29 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G416500 chr2B 595367764 595371197 3433 True 6342 6342 100.0000 1 3434 1 chr2B.!!$R1 3433
1 TraesCS2B01G416500 chr2B 595578428 595579394 966 False 359 359 73.8020 1401 2364 1 chr2B.!!$F1 963
2 TraesCS2B01G416500 chr2A 651820436 651823431 2995 True 2022 3938 91.8600 5 2853 2 chr2A.!!$R1 2848
3 TraesCS2B01G416500 chr2A 651916171 651917096 925 False 409 409 75.0800 1401 2320 1 chr2A.!!$F1 919
4 TraesCS2B01G416500 chr2D 507214393 507217534 3141 True 2249 3635 91.1445 150 3351 2 chr2D.!!$R2 3201
5 TraesCS2B01G416500 chr2D 507259182 507260157 975 False 398 398 74.4190 1401 2373 1 chr2D.!!$F1 972

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
862 879 0.030603 AATCCCCACTCCTCTCTCCC 60.031 60.0 0.0 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2645 2668 1.282447 TGTACACCGTGCCCCATAAAT 59.718 47.619 0.0 0.0 0.0 1.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.143969 CGATGGGCGTCGTTCTAACC 61.144 60.000 3.16 0.00 36.88 2.85
54 55 3.376859 TGCTGTCGGGCACATTATAAAAG 59.623 43.478 0.00 0.00 37.29 2.27
56 57 3.616219 TGTCGGGCACATTATAAAAGCT 58.384 40.909 6.98 0.00 0.00 3.74
57 58 3.376859 TGTCGGGCACATTATAAAAGCTG 59.623 43.478 0.00 0.00 0.00 4.24
66 67 7.331687 GGCACATTATAAAAGCTGACATGTTTT 59.668 33.333 0.00 0.00 0.00 2.43
67 68 8.164153 GCACATTATAAAAGCTGACATGTTTTG 58.836 33.333 0.00 0.00 0.00 2.44
68 69 9.195411 CACATTATAAAAGCTGACATGTTTTGT 57.805 29.630 0.00 0.00 42.79 2.83
79 80 6.680378 GCTGACATGTTTTGTAGGTTCAAACT 60.680 38.462 0.00 0.00 39.18 2.66
80 81 6.791303 TGACATGTTTTGTAGGTTCAAACTC 58.209 36.000 0.00 0.00 39.18 3.01
81 82 5.816919 ACATGTTTTGTAGGTTCAAACTCG 58.183 37.500 0.00 0.00 36.57 4.18
95 96 6.292542 GGTTCAAACTCGTTTTCAGTAGTACC 60.293 42.308 0.00 0.00 0.00 3.34
96 97 5.291971 TCAAACTCGTTTTCAGTAGTACCC 58.708 41.667 0.00 0.00 0.00 3.69
106 107 3.499338 TCAGTAGTACCCGAACCTGAAA 58.501 45.455 0.00 0.00 0.00 2.69
120 121 1.544759 CCTGAAACCCGCCATATACCC 60.545 57.143 0.00 0.00 0.00 3.69
129 130 2.225491 CCGCCATATACCCGTCAAAATG 59.775 50.000 0.00 0.00 0.00 2.32
133 134 4.059511 CCATATACCCGTCAAAATGCGTA 58.940 43.478 0.00 0.00 0.00 4.42
161 162 5.522315 TCCACCCATACACCAAATTCTAA 57.478 39.130 0.00 0.00 0.00 2.10
183 184 3.133691 CCATTCACTGATCCATACACGG 58.866 50.000 0.00 0.00 0.00 4.94
188 189 2.028125 CTGATCCATACACGGCCGGT 62.028 60.000 31.76 25.27 0.00 5.28
190 191 2.710724 GATCCATACACGGCCGGTCC 62.711 65.000 31.76 2.02 0.00 4.46
225 227 0.557729 CCCCTAGCCCCAAATCACAT 59.442 55.000 0.00 0.00 0.00 3.21
232 234 1.382522 CCCCAAATCACATGACCTCG 58.617 55.000 0.00 0.00 0.00 4.63
244 246 0.039764 TGACCTCGAGTCCTCCACAT 59.960 55.000 12.31 0.00 45.68 3.21
257 259 2.202797 CACATCCCTCGCTCGGTG 60.203 66.667 0.00 0.00 0.00 4.94
262 264 3.382832 CCCTCGCTCGGTGAACCT 61.383 66.667 0.00 0.00 0.00 3.50
263 265 2.182030 CCTCGCTCGGTGAACCTC 59.818 66.667 0.00 0.00 0.00 3.85
271 273 2.492484 GCTCGGTGAACCTCTCTCTTAA 59.508 50.000 0.00 0.00 0.00 1.85
274 276 4.341487 TCGGTGAACCTCTCTCTTAATCA 58.659 43.478 0.00 0.00 0.00 2.57
280 282 7.415877 GGTGAACCTCTCTCTTAATCACTACTC 60.416 44.444 0.00 0.00 36.74 2.59
293 295 1.813178 CACTACTCGCTCCTCAAGTCA 59.187 52.381 0.00 0.00 0.00 3.41
302 304 0.904865 TCCTCAAGTCACTCCCGCAT 60.905 55.000 0.00 0.00 0.00 4.73
306 308 0.172578 CAAGTCACTCCCGCATACGA 59.827 55.000 0.00 0.00 43.93 3.43
309 311 0.102481 GTCACTCCCGCATACGACAT 59.898 55.000 0.00 0.00 43.93 3.06
341 349 5.045505 CCTAAACCTAGAGCTTTTCCTCCTT 60.046 44.000 0.00 0.00 32.17 3.36
348 356 0.250770 GCTTTTCCTCCTTCCACCGT 60.251 55.000 0.00 0.00 0.00 4.83
349 357 1.818131 GCTTTTCCTCCTTCCACCGTT 60.818 52.381 0.00 0.00 0.00 4.44
353 361 1.073199 CCTCCTTCCACCGTTGCTT 59.927 57.895 0.00 0.00 0.00 3.91
410 418 2.035066 GGCATGTTTTCACTGACTGCTT 59.965 45.455 0.00 0.00 0.00 3.91
468 477 2.300723 GGGTTTAAAGGACGGGCAAAAT 59.699 45.455 0.00 0.00 0.00 1.82
483 492 0.324275 AAAATACTGGCCCCGTGCAT 60.324 50.000 0.00 0.00 43.89 3.96
487 496 1.554583 TACTGGCCCCGTGCATGTTA 61.555 55.000 0.00 0.00 43.89 2.41
489 498 1.000270 TGGCCCCGTGCATGTTAAT 60.000 52.632 0.00 0.00 43.89 1.40
490 499 0.613292 TGGCCCCGTGCATGTTAATT 60.613 50.000 0.00 0.00 43.89 1.40
493 502 1.203523 GCCCCGTGCATGTTAATTGAA 59.796 47.619 4.96 0.00 40.77 2.69
494 503 2.353208 GCCCCGTGCATGTTAATTGAAA 60.353 45.455 4.96 0.00 40.77 2.69
496 505 2.914214 CCCGTGCATGTTAATTGAAACG 59.086 45.455 4.96 0.00 31.76 3.60
498 507 3.365465 CCGTGCATGTTAATTGAAACGGA 60.365 43.478 19.87 0.00 43.15 4.69
518 527 2.994578 GAGACGGGCTTGTAGTTTTCTC 59.005 50.000 0.00 0.00 0.00 2.87
527 536 1.000060 TGTAGTTTTCTCGTGGGGACG 60.000 52.381 0.00 0.00 0.00 4.79
547 556 0.817634 GGTTTGGGCAAGCAAAACCC 60.818 55.000 21.60 10.49 44.63 4.11
551 560 3.485764 GGGCAAGCAAAACCCAAAA 57.514 47.368 0.00 0.00 43.64 2.44
553 562 1.308047 GGCAAGCAAAACCCAAAAGG 58.692 50.000 0.00 0.00 43.78 3.11
554 563 1.308047 GCAAGCAAAACCCAAAAGGG 58.692 50.000 0.00 0.00 41.63 3.95
555 564 1.134250 GCAAGCAAAACCCAAAAGGGA 60.134 47.619 7.71 0.00 41.63 4.20
556 565 2.560504 CAAGCAAAACCCAAAAGGGAC 58.439 47.619 7.71 0.00 41.63 4.46
558 567 0.249699 GCAAAACCCAAAAGGGACGG 60.250 55.000 7.71 0.00 41.63 4.79
559 568 0.391228 CAAAACCCAAAAGGGACGGG 59.609 55.000 7.71 0.00 46.22 5.28
562 571 4.611119 CCCAAAAGGGACGGGTTT 57.389 55.556 0.00 0.00 40.01 3.27
563 572 2.829094 CCCAAAAGGGACGGGTTTT 58.171 52.632 0.00 0.00 40.01 2.43
564 573 0.391228 CCCAAAAGGGACGGGTTTTG 59.609 55.000 0.00 0.00 41.39 2.44
565 574 0.249699 CCAAAAGGGACGGGTTTTGC 60.250 55.000 2.66 0.00 40.71 3.68
566 575 0.750249 CAAAAGGGACGGGTTTTGCT 59.250 50.000 0.00 0.00 36.97 3.91
643 656 3.013921 GTTCGCCAGATAACATTTCCCA 58.986 45.455 0.00 0.00 0.00 4.37
700 715 4.279671 AGTCTACCTGAAGTCTCAAGTGTG 59.720 45.833 0.00 0.00 28.94 3.82
751 766 3.886505 TGAACAACCTTAACCGAAAGCAT 59.113 39.130 0.00 0.00 0.00 3.79
759 774 1.039856 AACCGAAAGCATGGCAAGTT 58.960 45.000 0.00 0.00 0.00 2.66
782 797 1.556911 CTGCCACTACTCCCAATCTGT 59.443 52.381 0.00 0.00 0.00 3.41
800 815 1.621814 TGTACTACTTCCCCAGCACAC 59.378 52.381 0.00 0.00 0.00 3.82
859 876 0.327000 CCCAATCCCCACTCCTCTCT 60.327 60.000 0.00 0.00 0.00 3.10
862 879 0.030603 AATCCCCACTCCTCTCTCCC 60.031 60.000 0.00 0.00 0.00 4.30
863 880 1.967343 ATCCCCACTCCTCTCTCCCC 61.967 65.000 0.00 0.00 0.00 4.81
910 927 4.729918 CTGGTGCTGGTGGCCCTC 62.730 72.222 0.00 0.00 40.92 4.30
912 929 4.416738 GGTGCTGGTGGCCCTCTC 62.417 72.222 0.00 0.00 40.92 3.20
913 930 4.416738 GTGCTGGTGGCCCTCTCC 62.417 72.222 0.00 0.00 40.92 3.71
1011 1028 3.174987 CCCACCATGGCCGGGATA 61.175 66.667 28.84 0.00 43.21 2.59
1113 1130 0.898789 TCCTCCTCTTCGTCGCCTTT 60.899 55.000 0.00 0.00 0.00 3.11
1120 1137 2.820767 CTTCGTCGCCTTTCGCTCCT 62.821 60.000 0.00 0.00 38.27 3.69
1317 1334 2.669240 GTTTGCCCCTACCTCGCT 59.331 61.111 0.00 0.00 0.00 4.93
2160 2180 1.831106 CAGTACCACTGGTATCTGCCA 59.169 52.381 11.24 0.00 42.35 4.92
2568 2591 4.753516 TGACTGTGGTTGTATATGGGAG 57.246 45.455 0.00 0.00 0.00 4.30
2635 2658 6.282199 AGTGTACGAAATTGTGGAGTCTAT 57.718 37.500 0.00 0.00 0.00 1.98
2636 2659 6.698380 AGTGTACGAAATTGTGGAGTCTATT 58.302 36.000 0.00 0.00 0.00 1.73
2637 2660 7.833786 AGTGTACGAAATTGTGGAGTCTATTA 58.166 34.615 0.00 0.00 0.00 0.98
2638 2661 7.974501 AGTGTACGAAATTGTGGAGTCTATTAG 59.025 37.037 0.00 0.00 0.00 1.73
2639 2662 7.758528 GTGTACGAAATTGTGGAGTCTATTAGT 59.241 37.037 0.00 0.00 0.00 2.24
2640 2663 7.972277 TGTACGAAATTGTGGAGTCTATTAGTC 59.028 37.037 0.00 0.00 0.00 2.59
2641 2664 6.338937 ACGAAATTGTGGAGTCTATTAGTCC 58.661 40.000 0.00 0.00 46.69 3.85
2642 2665 6.154706 ACGAAATTGTGGAGTCTATTAGTCCT 59.845 38.462 0.00 0.00 46.65 3.85
2643 2666 7.042335 CGAAATTGTGGAGTCTATTAGTCCTT 58.958 38.462 0.00 0.00 46.65 3.36
2644 2667 7.549488 CGAAATTGTGGAGTCTATTAGTCCTTT 59.451 37.037 0.00 0.00 46.65 3.11
2645 2668 9.886132 GAAATTGTGGAGTCTATTAGTCCTTTA 57.114 33.333 0.00 0.00 46.65 1.85
2695 2718 1.588674 CAACACGGTTTGACAGGCTA 58.411 50.000 0.00 0.00 0.00 3.93
2710 2733 6.413892 TGACAGGCTACATCAAATGTGATAA 58.586 36.000 0.00 0.00 42.88 1.75
2726 2749 5.116180 TGTGATAATCCTCGGTCAATTGTC 58.884 41.667 5.13 0.00 0.00 3.18
2837 3026 1.094073 GTACTCCTACGGCTGCTCGA 61.094 60.000 15.53 0.00 0.00 4.04
2871 3060 9.363401 CATATGATACTATCTTTATACCGGGGA 57.637 37.037 6.32 0.00 0.00 4.81
2895 3084 2.351738 CGGTGACTTGGCCTGATTTTTC 60.352 50.000 3.32 0.00 0.00 2.29
2896 3085 2.029020 GGTGACTTGGCCTGATTTTTCC 60.029 50.000 3.32 0.00 0.00 3.13
2898 3087 3.057245 GTGACTTGGCCTGATTTTTCCTC 60.057 47.826 3.32 0.00 0.00 3.71
2908 3098 6.127083 GGCCTGATTTTTCCTCCAAATGATAA 60.127 38.462 0.00 0.00 0.00 1.75
2923 3113 7.068103 TCCAAATGATAAGTGTCACAAGTTTGT 59.932 33.333 5.62 0.00 43.36 2.83
2930 3120 5.490139 AGTGTCACAAGTTTGTCATGAAG 57.510 39.130 5.62 0.00 39.91 3.02
2941 3131 2.861274 TGTCATGAAGCAACATGGTCA 58.139 42.857 18.27 15.25 45.10 4.02
2942 3132 2.553602 TGTCATGAAGCAACATGGTCAC 59.446 45.455 18.27 12.10 45.10 3.67
2943 3133 1.805943 TCATGAAGCAACATGGTCACG 59.194 47.619 18.27 0.00 45.10 4.35
2944 3134 1.805943 CATGAAGCAACATGGTCACGA 59.194 47.619 13.06 0.00 42.45 4.35
2945 3135 1.960417 TGAAGCAACATGGTCACGAA 58.040 45.000 0.00 0.00 0.00 3.85
2946 3136 1.872952 TGAAGCAACATGGTCACGAAG 59.127 47.619 0.00 0.00 0.00 3.79
2948 3138 0.534877 AGCAACATGGTCACGAAGCA 60.535 50.000 0.00 0.00 40.26 3.91
2949 3139 0.310543 GCAACATGGTCACGAAGCAA 59.689 50.000 0.00 0.00 39.21 3.91
2952 3142 1.896220 ACATGGTCACGAAGCAACAT 58.104 45.000 0.00 0.00 39.21 2.71
2953 3143 1.536766 ACATGGTCACGAAGCAACATG 59.463 47.619 0.00 0.00 39.21 3.21
2954 3144 1.135603 CATGGTCACGAAGCAACATGG 60.136 52.381 0.00 0.00 39.21 3.66
2957 3147 0.517316 GTCACGAAGCAACATGGTCC 59.483 55.000 0.00 0.00 0.00 4.46
2958 3148 0.107643 TCACGAAGCAACATGGTCCA 59.892 50.000 0.00 0.00 0.00 4.02
2959 3149 0.950836 CACGAAGCAACATGGTCCAA 59.049 50.000 0.00 0.00 0.00 3.53
2960 3150 1.541147 CACGAAGCAACATGGTCCAAT 59.459 47.619 0.00 0.00 0.00 3.16
2961 3151 1.541147 ACGAAGCAACATGGTCCAATG 59.459 47.619 0.00 0.00 0.00 2.82
2962 3152 1.811965 CGAAGCAACATGGTCCAATGA 59.188 47.619 0.00 0.00 0.00 2.57
2963 3153 2.414559 CGAAGCAACATGGTCCAATGAC 60.415 50.000 0.00 0.00 40.98 3.06
3097 3298 7.170828 TCCGTTGTAATCATTAAATCCATCTCG 59.829 37.037 0.00 0.00 0.00 4.04
3114 3315 4.238761 TCTCGACGTGATCTTCAAAACT 57.761 40.909 0.00 0.00 0.00 2.66
3141 3342 7.818493 ATCTCGTATTGATATGTTTCGATGG 57.182 36.000 0.00 0.00 0.00 3.51
3142 3343 6.745116 TCTCGTATTGATATGTTTCGATGGT 58.255 36.000 0.00 0.00 0.00 3.55
3176 3378 9.205719 TCCAAAAATTGTCATGATGTTACATTG 57.794 29.630 0.00 0.00 0.00 2.82
3185 3387 8.574737 TGTCATGATGTTACATTGAAATTGACA 58.425 29.630 0.00 15.08 0.00 3.58
3294 3498 9.339850 TCATGAAAATTTATTAATTGGCCATGG 57.660 29.630 6.09 7.63 36.91 3.66
3305 3509 1.544724 TGGCCATGGCAAGTTTAGTC 58.455 50.000 36.56 17.09 44.11 2.59
3314 3518 6.127366 CCATGGCAAGTTTAGTCATTAACCAT 60.127 38.462 0.00 0.00 34.60 3.55
3372 3576 1.734163 GTGGAAACGACACCTATGGG 58.266 55.000 0.00 0.00 38.88 4.00
3373 3577 1.276989 GTGGAAACGACACCTATGGGA 59.723 52.381 0.25 0.00 36.25 4.37
3374 3578 2.093128 GTGGAAACGACACCTATGGGAT 60.093 50.000 0.25 0.00 36.25 3.85
3375 3579 2.169769 TGGAAACGACACCTATGGGATC 59.830 50.000 0.25 0.00 36.25 3.36
3376 3580 2.169769 GGAAACGACACCTATGGGATCA 59.830 50.000 0.25 0.00 36.25 2.92
3377 3581 2.981859 AACGACACCTATGGGATCAC 57.018 50.000 0.25 0.00 36.25 3.06
3378 3582 0.744874 ACGACACCTATGGGATCACG 59.255 55.000 0.25 4.78 36.25 4.35
3379 3583 1.029681 CGACACCTATGGGATCACGA 58.970 55.000 0.25 0.00 36.25 4.35
3380 3584 1.001268 CGACACCTATGGGATCACGAG 60.001 57.143 0.25 0.00 36.25 4.18
3381 3585 1.341531 GACACCTATGGGATCACGAGG 59.658 57.143 13.04 13.04 36.13 4.63
3382 3586 1.063190 ACACCTATGGGATCACGAGGA 60.063 52.381 19.92 0.00 34.84 3.71
3383 3587 2.251818 CACCTATGGGATCACGAGGAT 58.748 52.381 19.92 4.41 39.53 3.24
3384 3588 3.181422 ACACCTATGGGATCACGAGGATA 60.181 47.826 19.92 0.00 36.00 2.59
3385 3589 3.193691 CACCTATGGGATCACGAGGATAC 59.806 52.174 19.92 0.00 36.00 2.24
3392 3596 4.769859 GGATCACGAGGATACCTTCTAC 57.230 50.000 0.00 0.00 36.00 2.59
3393 3597 3.188873 GGATCACGAGGATACCTTCTACG 59.811 52.174 0.00 0.00 36.00 3.51
3394 3598 2.569059 TCACGAGGATACCTTCTACGG 58.431 52.381 0.00 0.00 31.76 4.02
3395 3599 2.092753 TCACGAGGATACCTTCTACGGT 60.093 50.000 0.00 0.00 41.10 4.83
3396 3600 2.686915 CACGAGGATACCTTCTACGGTT 59.313 50.000 0.00 0.00 38.49 4.44
3397 3601 2.686915 ACGAGGATACCTTCTACGGTTG 59.313 50.000 0.00 0.00 38.49 3.77
3398 3602 2.034305 CGAGGATACCTTCTACGGTTGG 59.966 54.545 0.00 0.00 38.49 3.77
3399 3603 1.761198 AGGATACCTTCTACGGTTGGC 59.239 52.381 0.00 0.00 38.49 4.52
3400 3604 1.537562 GGATACCTTCTACGGTTGGCG 60.538 57.143 0.00 0.00 38.49 5.69
3401 3605 0.462789 ATACCTTCTACGGTTGGCGG 59.537 55.000 0.00 0.00 38.49 6.13
3402 3606 1.606885 TACCTTCTACGGTTGGCGGG 61.607 60.000 0.00 0.00 38.49 6.13
3403 3607 2.818274 CTTCTACGGTTGGCGGGC 60.818 66.667 0.00 0.00 0.00 6.13
3404 3608 4.745751 TTCTACGGTTGGCGGGCG 62.746 66.667 0.00 0.00 0.00 6.13
3419 3623 4.999939 GCGCGGGGTTGTGCAAAG 63.000 66.667 8.83 0.00 44.59 2.77
3420 3624 3.283684 CGCGGGGTTGTGCAAAGA 61.284 61.111 0.00 0.00 0.00 2.52
3421 3625 2.644992 GCGGGGTTGTGCAAAGAG 59.355 61.111 0.00 0.00 0.00 2.85
3422 3626 2.644992 CGGGGTTGTGCAAAGAGC 59.355 61.111 0.00 0.00 45.96 4.09
3432 3636 2.755929 GCAAAGAGCGGGTCTAGTG 58.244 57.895 10.52 12.38 32.65 2.74
3433 3637 0.741221 GCAAAGAGCGGGTCTAGTGG 60.741 60.000 10.52 2.02 32.65 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.894240 TTAGAACGACGCCCATCGCC 62.894 60.000 0.00 0.00 46.22 5.54
2 3 1.517694 TTAGAACGACGCCCATCGC 60.518 57.895 0.00 0.00 46.22 4.58
9 10 3.184003 GCGGGGTTAGAACGACGC 61.184 66.667 13.80 13.80 43.48 5.19
37 38 3.625764 GTCAGCTTTTATAATGTGCCCGA 59.374 43.478 0.00 0.00 0.00 5.14
38 39 3.376859 TGTCAGCTTTTATAATGTGCCCG 59.623 43.478 0.00 0.00 0.00 6.13
54 55 4.829064 TGAACCTACAAAACATGTCAGC 57.171 40.909 0.00 0.00 42.70 4.26
56 57 6.457663 CGAGTTTGAACCTACAAAACATGTCA 60.458 38.462 0.00 0.00 42.70 3.58
57 58 5.907391 CGAGTTTGAACCTACAAAACATGTC 59.093 40.000 0.00 0.00 42.70 3.06
66 67 5.180271 ACTGAAAACGAGTTTGAACCTACA 58.820 37.500 1.65 0.00 32.36 2.74
67 68 5.729974 ACTGAAAACGAGTTTGAACCTAC 57.270 39.130 1.65 0.00 32.36 3.18
68 69 6.576185 ACTACTGAAAACGAGTTTGAACCTA 58.424 36.000 1.65 0.00 32.36 3.08
69 70 5.425630 ACTACTGAAAACGAGTTTGAACCT 58.574 37.500 1.65 0.00 32.36 3.50
79 80 3.305335 GGTTCGGGTACTACTGAAAACGA 60.305 47.826 0.00 0.00 37.48 3.85
80 81 2.989166 GGTTCGGGTACTACTGAAAACG 59.011 50.000 0.00 0.00 37.48 3.60
81 82 3.992427 CAGGTTCGGGTACTACTGAAAAC 59.008 47.826 0.00 0.00 37.48 2.43
95 96 3.053896 GGCGGGTTTCAGGTTCGG 61.054 66.667 0.00 0.00 0.00 4.30
96 97 0.391927 TATGGCGGGTTTCAGGTTCG 60.392 55.000 0.00 0.00 0.00 3.95
106 107 1.049855 TTGACGGGTATATGGCGGGT 61.050 55.000 0.00 0.00 0.00 5.28
129 130 2.028476 TGTATGGGTGGATATGCTACGC 60.028 50.000 0.00 1.93 40.63 4.42
133 134 2.417652 TGGTGTATGGGTGGATATGCT 58.582 47.619 0.00 0.00 0.00 3.79
144 145 7.122650 AGTGAATGGTTAGAATTTGGTGTATGG 59.877 37.037 0.00 0.00 0.00 2.74
161 162 3.432186 CCGTGTATGGATCAGTGAATGGT 60.432 47.826 0.00 0.00 0.00 3.55
210 212 1.922447 AGGTCATGTGATTTGGGGCTA 59.078 47.619 0.00 0.00 0.00 3.93
225 227 0.039764 ATGTGGAGGACTCGAGGTCA 59.960 55.000 18.41 4.48 46.16 4.02
232 234 2.022240 GCGAGGGATGTGGAGGACTC 62.022 65.000 0.00 0.00 0.00 3.36
244 246 3.379445 GGTTCACCGAGCGAGGGA 61.379 66.667 5.52 0.00 35.02 4.20
257 259 6.721321 CGAGTAGTGATTAAGAGAGAGGTTC 58.279 44.000 0.00 0.00 0.00 3.62
262 264 4.817464 GGAGCGAGTAGTGATTAAGAGAGA 59.183 45.833 0.00 0.00 0.00 3.10
263 265 4.819630 AGGAGCGAGTAGTGATTAAGAGAG 59.180 45.833 0.00 0.00 0.00 3.20
271 273 2.685897 GACTTGAGGAGCGAGTAGTGAT 59.314 50.000 0.00 0.00 41.42 3.06
274 276 1.813786 GTGACTTGAGGAGCGAGTAGT 59.186 52.381 0.00 0.00 41.42 2.73
280 282 1.216710 GGGAGTGACTTGAGGAGCG 59.783 63.158 0.00 0.00 0.00 5.03
293 295 0.102481 GTGATGTCGTATGCGGGAGT 59.898 55.000 2.62 0.00 38.89 3.85
302 304 3.306225 GGTTTAGGTGGTGTGATGTCGTA 60.306 47.826 0.00 0.00 0.00 3.43
306 308 4.164981 TCTAGGTTTAGGTGGTGTGATGT 58.835 43.478 0.00 0.00 0.00 3.06
309 311 2.565834 GCTCTAGGTTTAGGTGGTGTGA 59.434 50.000 0.00 0.00 0.00 3.58
341 349 1.002624 GGGATCAAGCAACGGTGGA 60.003 57.895 0.90 0.00 0.00 4.02
348 356 2.097036 CTGCAAGATGGGATCAAGCAA 58.903 47.619 0.00 0.00 39.59 3.91
349 357 1.758936 CTGCAAGATGGGATCAAGCA 58.241 50.000 0.00 0.00 38.43 3.91
353 361 1.153107 CGGCTGCAAGATGGGATCA 60.153 57.895 0.50 0.00 34.07 2.92
376 384 1.140161 CATGCCTGGTTTGCATCGG 59.860 57.895 0.00 0.00 46.04 4.18
383 391 3.030291 TCAGTGAAAACATGCCTGGTTT 58.970 40.909 4.55 4.55 44.95 3.27
388 396 1.610522 GCAGTCAGTGAAAACATGCCT 59.389 47.619 0.00 0.00 0.00 4.75
390 398 3.047796 CAAGCAGTCAGTGAAAACATGC 58.952 45.455 0.00 0.98 0.00 4.06
454 463 1.834188 CCAGTATTTTGCCCGTCCTT 58.166 50.000 0.00 0.00 0.00 3.36
455 464 0.679960 GCCAGTATTTTGCCCGTCCT 60.680 55.000 0.00 0.00 0.00 3.85
468 477 1.554583 TAACATGCACGGGGCCAGTA 61.555 55.000 9.55 0.00 43.89 2.74
483 492 3.068560 CCCGTCTCCGTTTCAATTAACA 58.931 45.455 0.00 0.00 0.00 2.41
487 496 0.036306 AGCCCGTCTCCGTTTCAATT 59.964 50.000 0.00 0.00 0.00 2.32
489 498 0.882927 CAAGCCCGTCTCCGTTTCAA 60.883 55.000 0.00 0.00 0.00 2.69
490 499 1.301401 CAAGCCCGTCTCCGTTTCA 60.301 57.895 0.00 0.00 0.00 2.69
493 502 1.183676 ACTACAAGCCCGTCTCCGTT 61.184 55.000 0.00 0.00 0.00 4.44
494 503 1.183676 AACTACAAGCCCGTCTCCGT 61.184 55.000 0.00 0.00 0.00 4.69
496 505 2.074576 GAAAACTACAAGCCCGTCTCC 58.925 52.381 0.00 0.00 0.00 3.71
498 507 2.609737 CGAGAAAACTACAAGCCCGTCT 60.610 50.000 0.00 0.00 0.00 4.18
527 536 0.817634 GGTTTTGCTTGCCCAAACCC 60.818 55.000 18.39 2.72 34.68 4.11
547 556 0.750249 AGCAAAACCCGTCCCTTTTG 59.250 50.000 0.00 0.00 39.41 2.44
548 557 1.037493 GAGCAAAACCCGTCCCTTTT 58.963 50.000 0.00 0.00 0.00 2.27
549 558 1.170290 CGAGCAAAACCCGTCCCTTT 61.170 55.000 0.00 0.00 0.00 3.11
550 559 1.599797 CGAGCAAAACCCGTCCCTT 60.600 57.895 0.00 0.00 0.00 3.95
551 560 2.032071 CGAGCAAAACCCGTCCCT 59.968 61.111 0.00 0.00 0.00 4.20
553 562 1.895231 AACCGAGCAAAACCCGTCC 60.895 57.895 0.00 0.00 0.00 4.79
554 563 1.281656 CAACCGAGCAAAACCCGTC 59.718 57.895 0.00 0.00 0.00 4.79
555 564 2.841160 GCAACCGAGCAAAACCCGT 61.841 57.895 0.00 0.00 0.00 5.28
556 565 2.050442 GCAACCGAGCAAAACCCG 60.050 61.111 0.00 0.00 0.00 5.28
558 567 0.388520 GATGGCAACCGAGCAAAACC 60.389 55.000 0.00 0.00 35.83 3.27
559 568 0.598065 AGATGGCAACCGAGCAAAAC 59.402 50.000 0.00 0.00 35.83 2.43
560 569 1.000385 CAAGATGGCAACCGAGCAAAA 60.000 47.619 0.00 0.00 35.83 2.44
561 570 0.597568 CAAGATGGCAACCGAGCAAA 59.402 50.000 0.00 0.00 35.83 3.68
562 571 0.250684 TCAAGATGGCAACCGAGCAA 60.251 50.000 0.00 0.00 35.83 3.91
563 572 0.674581 CTCAAGATGGCAACCGAGCA 60.675 55.000 0.00 0.00 35.83 4.26
564 573 0.391661 TCTCAAGATGGCAACCGAGC 60.392 55.000 0.00 0.00 0.00 5.03
565 574 1.363744 GTCTCAAGATGGCAACCGAG 58.636 55.000 0.00 0.00 0.00 4.63
566 575 0.389817 CGTCTCAAGATGGCAACCGA 60.390 55.000 0.00 0.00 0.00 4.69
666 681 2.187163 GTAGACTCCGGCCAAGGC 59.813 66.667 2.24 1.52 41.06 4.35
710 725 1.377202 GCATTGCCACGGAAGGAGA 60.377 57.895 0.00 0.00 0.00 3.71
711 726 1.377725 AGCATTGCCACGGAAGGAG 60.378 57.895 4.70 0.00 0.00 3.69
759 774 2.111384 GATTGGGAGTAGTGGCAGAGA 58.889 52.381 0.00 0.00 0.00 3.10
782 797 1.272807 GGTGTGCTGGGGAAGTAGTA 58.727 55.000 0.00 0.00 0.00 1.82
913 930 2.262774 ATTTGAGGCGAGCTGGGAGG 62.263 60.000 0.00 0.00 0.00 4.30
1149 1166 0.390860 CGGAAGAGGAGATTGCGGAT 59.609 55.000 0.00 0.00 37.77 4.18
1150 1167 0.970937 ACGGAAGAGGAGATTGCGGA 60.971 55.000 4.70 0.00 44.52 5.54
2160 2180 1.543429 CCTTCTTGGCCGTCTTCAGTT 60.543 52.381 0.00 0.00 0.00 3.16
2608 2631 3.206964 TCCACAATTTCGTACACTTGCA 58.793 40.909 0.00 0.00 0.00 4.08
2618 2641 6.574350 AGGACTAATAGACTCCACAATTTCG 58.426 40.000 0.00 0.00 0.00 3.46
2635 2658 5.127491 CGTGCCCCATAAATAAAGGACTAA 58.873 41.667 0.00 0.00 0.00 2.24
2636 2659 4.445162 CCGTGCCCCATAAATAAAGGACTA 60.445 45.833 0.00 0.00 0.00 2.59
2637 2660 3.551846 CGTGCCCCATAAATAAAGGACT 58.448 45.455 0.00 0.00 0.00 3.85
2638 2661 2.621526 CCGTGCCCCATAAATAAAGGAC 59.378 50.000 0.00 0.00 0.00 3.85
2639 2662 2.242708 ACCGTGCCCCATAAATAAAGGA 59.757 45.455 0.00 0.00 0.00 3.36
2640 2663 2.360801 CACCGTGCCCCATAAATAAAGG 59.639 50.000 0.00 0.00 0.00 3.11
2641 2664 3.020984 ACACCGTGCCCCATAAATAAAG 58.979 45.455 0.00 0.00 0.00 1.85
2642 2665 3.088789 ACACCGTGCCCCATAAATAAA 57.911 42.857 0.00 0.00 0.00 1.40
2643 2666 2.810870 ACACCGTGCCCCATAAATAA 57.189 45.000 0.00 0.00 0.00 1.40
2644 2667 2.504585 TGTACACCGTGCCCCATAAATA 59.495 45.455 0.00 0.00 0.00 1.40
2645 2668 1.282447 TGTACACCGTGCCCCATAAAT 59.718 47.619 0.00 0.00 0.00 1.40
2695 2718 5.684704 ACCGAGGATTATCACATTTGATGT 58.315 37.500 4.56 0.00 42.79 3.06
2710 2733 5.066505 GCAAAATAGACAATTGACCGAGGAT 59.933 40.000 13.59 0.00 0.00 3.24
2726 2749 9.806203 TTTCATACTCCATTTGATGCAAAATAG 57.194 29.630 0.00 0.00 36.90 1.73
2871 3060 4.988598 CAGGCCAAGTCACCGCGT 62.989 66.667 5.01 0.00 0.00 6.01
2875 3064 2.029020 GGAAAAATCAGGCCAAGTCACC 60.029 50.000 5.01 0.00 0.00 4.02
2880 3069 2.528564 TGGAGGAAAAATCAGGCCAAG 58.471 47.619 5.01 0.00 0.00 3.61
2895 3084 5.707298 ACTTGTGACACTTATCATTTGGAGG 59.293 40.000 7.20 0.00 0.00 4.30
2896 3085 6.808008 ACTTGTGACACTTATCATTTGGAG 57.192 37.500 7.20 0.00 0.00 3.86
2898 3087 7.202526 ACAAACTTGTGACACTTATCATTTGG 58.797 34.615 7.20 0.00 40.49 3.28
2908 3098 4.201950 GCTTCATGACAAACTTGTGACACT 60.202 41.667 7.20 0.00 42.43 3.55
2923 3113 1.805943 CGTGACCATGTTGCTTCATGA 59.194 47.619 18.30 0.00 45.41 3.07
2930 3120 0.310543 TTGCTTCGTGACCATGTTGC 59.689 50.000 0.00 0.00 0.00 4.17
2941 3131 1.541147 CATTGGACCATGTTGCTTCGT 59.459 47.619 0.00 0.00 0.00 3.85
2942 3132 1.811965 TCATTGGACCATGTTGCTTCG 59.188 47.619 0.00 0.00 0.00 3.79
2943 3133 3.221964 GTCATTGGACCATGTTGCTTC 57.778 47.619 0.00 0.00 38.12 3.86
2995 3196 9.512435 AATCAAAAAGATTTCGATGATGTCATC 57.488 29.630 11.99 11.99 44.48 2.92
3077 3278 7.381408 TCACGTCGAGATGGATTTAATGATTAC 59.619 37.037 0.00 0.00 0.00 1.89
3091 3292 4.623167 AGTTTTGAAGATCACGTCGAGATG 59.377 41.667 10.00 0.00 0.00 2.90
3092 3293 4.810790 AGTTTTGAAGATCACGTCGAGAT 58.189 39.130 4.76 4.76 0.00 2.75
3093 3294 4.238761 AGTTTTGAAGATCACGTCGAGA 57.761 40.909 0.00 0.00 0.00 4.04
3097 3298 7.644551 ACGAGATATAGTTTTGAAGATCACGTC 59.355 37.037 0.00 0.00 36.39 4.34
3150 3351 9.205719 CAATGTAACATCATGACAATTTTTGGA 57.794 29.630 0.00 0.00 34.12 3.53
3273 3475 7.614974 ACTTGCCATGGCCAATTAATAAATTTT 59.385 29.630 33.44 2.98 41.09 1.82
3276 3478 6.251255 ACTTGCCATGGCCAATTAATAAAT 57.749 33.333 33.44 5.75 41.09 1.40
3294 3498 5.102313 GCCATGGTTAATGACTAAACTTGC 58.898 41.667 14.67 0.00 38.72 4.01
3305 3509 9.938670 CATGAATTAAATTTGCCATGGTTAATG 57.061 29.630 14.67 1.44 35.89 1.90
3314 3518 6.993308 CCATGATCCATGAATTAAATTTGCCA 59.007 34.615 8.38 0.00 43.81 4.92
3353 3557 1.276989 TCCCATAGGTGTCGTTTCCAC 59.723 52.381 0.00 0.00 0.00 4.02
3354 3558 1.646912 TCCCATAGGTGTCGTTTCCA 58.353 50.000 0.00 0.00 0.00 3.53
3355 3559 2.169769 TGATCCCATAGGTGTCGTTTCC 59.830 50.000 0.00 0.00 0.00 3.13
3356 3560 3.195661 GTGATCCCATAGGTGTCGTTTC 58.804 50.000 0.00 0.00 0.00 2.78
3357 3561 2.418197 CGTGATCCCATAGGTGTCGTTT 60.418 50.000 0.00 0.00 0.00 3.60
3358 3562 1.136305 CGTGATCCCATAGGTGTCGTT 59.864 52.381 0.00 0.00 0.00 3.85
3359 3563 0.744874 CGTGATCCCATAGGTGTCGT 59.255 55.000 0.00 0.00 0.00 4.34
3360 3564 1.001268 CTCGTGATCCCATAGGTGTCG 60.001 57.143 0.00 0.00 0.00 4.35
3361 3565 1.341531 CCTCGTGATCCCATAGGTGTC 59.658 57.143 0.00 0.00 0.00 3.67
3362 3566 1.063190 TCCTCGTGATCCCATAGGTGT 60.063 52.381 0.00 0.00 32.90 4.16
3363 3567 1.704641 TCCTCGTGATCCCATAGGTG 58.295 55.000 0.00 0.00 32.90 4.00
3364 3568 2.704190 ATCCTCGTGATCCCATAGGT 57.296 50.000 0.00 0.00 32.90 3.08
3365 3569 2.761208 GGTATCCTCGTGATCCCATAGG 59.239 54.545 0.00 0.00 34.76 2.57
3366 3570 3.702792 AGGTATCCTCGTGATCCCATAG 58.297 50.000 0.00 0.00 31.95 2.23
3367 3571 3.827817 AGGTATCCTCGTGATCCCATA 57.172 47.619 0.00 0.00 31.95 2.74
3368 3572 2.704190 AGGTATCCTCGTGATCCCAT 57.296 50.000 0.00 0.00 31.95 4.00
3369 3573 2.091278 AGAAGGTATCCTCGTGATCCCA 60.091 50.000 0.00 0.00 31.95 4.37
3370 3574 2.599677 AGAAGGTATCCTCGTGATCCC 58.400 52.381 0.00 0.00 34.76 3.85
3371 3575 3.188873 CGTAGAAGGTATCCTCGTGATCC 59.811 52.174 0.00 0.00 34.76 3.36
3372 3576 3.188873 CCGTAGAAGGTATCCTCGTGATC 59.811 52.174 0.00 0.00 34.76 2.92
3373 3577 3.147629 CCGTAGAAGGTATCCTCGTGAT 58.852 50.000 0.00 0.00 37.49 3.06
3374 3578 2.092753 ACCGTAGAAGGTATCCTCGTGA 60.093 50.000 0.00 0.00 43.89 4.35
3375 3579 2.295885 ACCGTAGAAGGTATCCTCGTG 58.704 52.381 0.00 0.00 43.89 4.35
3376 3580 2.686915 CAACCGTAGAAGGTATCCTCGT 59.313 50.000 0.00 0.00 45.21 4.18
3377 3581 2.034305 CCAACCGTAGAAGGTATCCTCG 59.966 54.545 0.00 0.00 45.21 4.63
3378 3582 2.223994 GCCAACCGTAGAAGGTATCCTC 60.224 54.545 0.00 0.00 45.21 3.71
3379 3583 1.761198 GCCAACCGTAGAAGGTATCCT 59.239 52.381 0.00 0.00 45.21 3.24
3380 3584 1.537562 CGCCAACCGTAGAAGGTATCC 60.538 57.143 0.00 0.00 45.21 2.59
3381 3585 1.537562 CCGCCAACCGTAGAAGGTATC 60.538 57.143 0.00 0.00 45.21 2.24
3382 3586 0.462789 CCGCCAACCGTAGAAGGTAT 59.537 55.000 0.00 0.00 45.21 2.73
3383 3587 1.606885 CCCGCCAACCGTAGAAGGTA 61.607 60.000 0.00 0.00 45.21 3.08
3385 3589 2.125269 CCCGCCAACCGTAGAAGG 60.125 66.667 0.00 0.00 34.38 3.46
3386 3590 2.818274 GCCCGCCAACCGTAGAAG 60.818 66.667 0.00 0.00 34.38 2.85
3387 3591 4.745751 CGCCCGCCAACCGTAGAA 62.746 66.667 0.00 0.00 34.38 2.10
3402 3606 4.999939 CTTTGCACAACCCCGCGC 63.000 66.667 0.00 0.00 0.00 6.86
3403 3607 3.254014 CTCTTTGCACAACCCCGCG 62.254 63.158 0.00 0.00 0.00 6.46
3404 3608 2.644992 CTCTTTGCACAACCCCGC 59.355 61.111 0.00 0.00 0.00 6.13
3405 3609 2.644992 GCTCTTTGCACAACCCCG 59.355 61.111 0.00 0.00 42.31 5.73
3406 3610 2.644992 CGCTCTTTGCACAACCCC 59.355 61.111 0.00 0.00 43.06 4.95
3407 3611 2.644992 CCGCTCTTTGCACAACCC 59.355 61.111 0.00 0.00 43.06 4.11
3408 3612 2.130073 GACCCGCTCTTTGCACAACC 62.130 60.000 0.00 0.00 43.06 3.77
3409 3613 1.166531 AGACCCGCTCTTTGCACAAC 61.167 55.000 0.00 0.00 43.06 3.32
3410 3614 0.394938 TAGACCCGCTCTTTGCACAA 59.605 50.000 0.00 0.00 43.06 3.33
3411 3615 0.037326 CTAGACCCGCTCTTTGCACA 60.037 55.000 0.00 0.00 43.06 4.57
3412 3616 0.037232 ACTAGACCCGCTCTTTGCAC 60.037 55.000 0.00 0.00 43.06 4.57
3413 3617 0.037326 CACTAGACCCGCTCTTTGCA 60.037 55.000 0.00 0.00 43.06 4.08
3414 3618 0.741221 CCACTAGACCCGCTCTTTGC 60.741 60.000 0.00 0.00 38.57 3.68
3415 3619 3.442996 CCACTAGACCCGCTCTTTG 57.557 57.895 0.00 0.00 0.00 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.