Multiple sequence alignment - TraesCS2B01G416400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G416400 chr2B 100.000 3287 0 0 1 3287 595124454 595127740 0.000000e+00 6071.0
1 TraesCS2B01G416400 chr2B 100.000 133 0 0 3155 3287 24248958 24249090 2.530000e-61 246.0
2 TraesCS2B01G416400 chr2A 93.235 2025 83 23 708 2708 651801419 651803413 0.000000e+00 2931.0
3 TraesCS2B01G416400 chr2A 82.515 326 37 10 209 515 651801018 651801342 5.410000e-68 268.0
4 TraesCS2B01G416400 chr2A 89.205 176 19 0 507 682 753421738 753421563 1.540000e-53 220.0
5 TraesCS2B01G416400 chr2A 94.074 135 8 0 3025 3159 765825106 765825240 4.300000e-49 206.0
6 TraesCS2B01G416400 chr2D 91.604 2132 87 34 678 2779 507049155 507051224 0.000000e+00 2861.0
7 TraesCS2B01G416400 chr2D 90.643 171 14 2 517 687 154632404 154632572 3.300000e-55 226.0
8 TraesCS2B01G416400 chr2D 91.463 164 14 0 516 679 240791022 240791185 3.300000e-55 226.0
9 TraesCS2B01G416400 chr1B 95.082 244 9 2 2790 3031 36274402 36274644 6.660000e-102 381.0
10 TraesCS2B01G416400 chr1B 95.021 241 9 2 2793 3031 61990716 61990955 3.100000e-100 375.0
11 TraesCS2B01G416400 chr1B 99.248 133 1 0 3155 3287 672156604 672156736 1.180000e-59 241.0
12 TraesCS2B01G416400 chr1B 99.248 133 1 0 3155 3287 673998466 673998598 1.180000e-59 241.0
13 TraesCS2B01G416400 chr1B 97.778 135 3 0 3025 3159 673996520 673996654 1.970000e-57 233.0
14 TraesCS2B01G416400 chr7B 95.041 242 9 2 2792 3031 699151795 699152035 8.610000e-101 377.0
15 TraesCS2B01G416400 chr7B 94.606 241 12 1 2791 3031 564178166 564177927 4.010000e-99 372.0
16 TraesCS2B01G416400 chr7B 87.817 197 18 5 488 679 741942501 741942696 3.300000e-55 226.0
17 TraesCS2B01G416400 chr7B 87.310 197 19 5 488 679 741871504 741871699 1.540000e-53 220.0
18 TraesCS2B01G416400 chr7B 86.029 136 13 3 3025 3159 78061663 78061793 1.230000e-29 141.0
19 TraesCS2B01G416400 chr5B 95.021 241 9 2 2793 3031 864766 864527 3.100000e-100 375.0
20 TraesCS2B01G416400 chr5B 95.021 241 9 2 2793 3031 411933655 411933416 3.100000e-100 375.0
21 TraesCS2B01G416400 chr5B 100.000 133 0 0 3155 3287 686431729 686431861 2.530000e-61 246.0
22 TraesCS2B01G416400 chr5B 100.000 130 0 0 3158 3287 863947 863818 1.180000e-59 241.0
23 TraesCS2B01G416400 chr5B 96.296 135 5 0 3025 3159 115373211 115373345 4.270000e-54 222.0
24 TraesCS2B01G416400 chr5B 84.892 139 13 5 3026 3159 436620234 436620099 2.060000e-27 134.0
25 TraesCS2B01G416400 chr4B 95.021 241 9 2 2793 3031 28266972 28266733 3.100000e-100 375.0
26 TraesCS2B01G416400 chr4B 94.628 242 9 3 2793 3031 640828484 640828244 4.010000e-99 372.0
27 TraesCS2B01G416400 chr4B 94.606 241 10 2 2793 3031 672315503 672315264 1.440000e-98 370.0
28 TraesCS2B01G416400 chr4B 89.310 290 4 4 3025 3287 672314761 672314472 4.060000e-89 339.0
29 TraesCS2B01G416400 chr4B 100.000 132 0 0 3156 3287 89004214 89004083 9.110000e-61 244.0
30 TraesCS2B01G416400 chr4B 100.000 130 0 0 3158 3287 479218190 479218061 1.180000e-59 241.0
31 TraesCS2B01G416400 chr6B 99.248 133 1 0 3155 3287 693804043 693804175 1.180000e-59 241.0
32 TraesCS2B01G416400 chr4A 98.519 135 2 0 3025 3159 693425725 693425859 4.240000e-59 239.0
33 TraesCS2B01G416400 chr4A 100.000 29 0 0 517 545 66146186 66146158 2.000000e-03 54.7
34 TraesCS2B01G416400 chr3D 89.714 175 18 0 516 690 486424950 486424776 1.190000e-54 224.0
35 TraesCS2B01G416400 chr1D 88.950 181 18 2 499 679 450202037 450202215 4.270000e-54 222.0
36 TraesCS2B01G416400 chr3B 90.419 167 16 0 514 680 621525921 621525755 1.540000e-53 220.0
37 TraesCS2B01G416400 chr3B 95.556 135 6 0 3025 3159 64312133 64312267 1.990000e-52 217.0
38 TraesCS2B01G416400 chr4D 86.598 194 23 3 517 709 240930274 240930465 9.240000e-51 211.0
39 TraesCS2B01G416400 chr3A 90.370 135 10 3 3025 3159 81659629 81659760 1.210000e-39 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G416400 chr2B 595124454 595127740 3286 False 6071.0 6071 100.0000 1 3287 1 chr2B.!!$F2 3286
1 TraesCS2B01G416400 chr2A 651801018 651803413 2395 False 1599.5 2931 87.8750 209 2708 2 chr2A.!!$F2 2499
2 TraesCS2B01G416400 chr2D 507049155 507051224 2069 False 2861.0 2861 91.6040 678 2779 1 chr2D.!!$F3 2101
3 TraesCS2B01G416400 chr1B 673996520 673998598 2078 False 237.0 241 98.5130 3025 3287 2 chr1B.!!$F4 262
4 TraesCS2B01G416400 chr5B 863818 864766 948 True 308.0 375 97.5105 2793 3287 2 chr5B.!!$R3 494
5 TraesCS2B01G416400 chr4B 672314472 672315503 1031 True 354.5 370 91.9580 2793 3287 2 chr4B.!!$R5 494

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
62 63 0.035056 AGCTTACACATGGGAGGCAC 60.035 55.0 0.0 0.0 0.00 5.01 F
64 65 0.036388 CTTACACATGGGAGGCACGT 60.036 55.0 0.0 0.0 0.00 4.49 F
65 66 0.036765 TTACACATGGGAGGCACGTC 60.037 55.0 0.0 0.0 0.00 4.34 F
167 168 0.037447 GGGAAGCCTTTGCAGTCTCT 59.963 55.0 0.0 0.0 41.13 3.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1121 1177 0.827368 CTTGGTCTGGGAGAGGTAGC 59.173 60.000 0.00 0.0 0.00 3.58 R
1459 1515 1.207329 GTTGTACGGCTCCTCCTTGAT 59.793 52.381 0.00 0.0 0.00 2.57 R
1878 1934 1.819632 GTCCATGCCGGTGTCCATC 60.820 63.158 1.90 0.0 35.57 3.51 R
2738 2827 0.035152 CATCCAGTAGGCCAACAGCA 60.035 55.000 5.01 0.0 46.50 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.681705 GCACACACAACCATGATCG 57.318 52.632 0.00 0.00 0.00 3.69
19 20 0.874390 GCACACACAACCATGATCGT 59.126 50.000 0.00 0.00 0.00 3.73
20 21 1.135972 GCACACACAACCATGATCGTC 60.136 52.381 0.00 0.00 0.00 4.20
21 22 2.416747 CACACACAACCATGATCGTCT 58.583 47.619 0.00 0.00 0.00 4.18
22 23 2.158254 CACACACAACCATGATCGTCTG 59.842 50.000 0.00 0.00 0.00 3.51
23 24 1.129251 CACACAACCATGATCGTCTGC 59.871 52.381 0.00 0.00 0.00 4.26
24 25 0.371301 CACAACCATGATCGTCTGCG 59.629 55.000 0.00 0.00 39.92 5.18
25 26 0.740868 ACAACCATGATCGTCTGCGG 60.741 55.000 0.00 0.00 38.89 5.69
26 27 0.460109 CAACCATGATCGTCTGCGGA 60.460 55.000 0.00 0.00 38.89 5.54
27 28 0.249120 AACCATGATCGTCTGCGGAA 59.751 50.000 0.00 0.00 38.89 4.30
28 29 0.179100 ACCATGATCGTCTGCGGAAG 60.179 55.000 0.00 0.00 38.89 3.46
29 30 0.877649 CCATGATCGTCTGCGGAAGG 60.878 60.000 8.69 0.00 38.89 3.46
30 31 1.227380 ATGATCGTCTGCGGAAGGC 60.227 57.895 8.69 2.41 43.96 4.35
31 32 2.586357 GATCGTCTGCGGAAGGCC 60.586 66.667 8.69 0.00 42.61 5.19
42 43 3.398694 GGAAGGCCGAGGAAATACC 57.601 57.895 0.00 0.00 39.35 2.73
43 44 0.544697 GGAAGGCCGAGGAAATACCA 59.455 55.000 0.00 0.00 42.04 3.25
44 45 1.475213 GGAAGGCCGAGGAAATACCAG 60.475 57.143 0.00 0.00 42.04 4.00
45 46 0.107165 AAGGCCGAGGAAATACCAGC 60.107 55.000 0.00 0.00 42.04 4.85
46 47 0.983378 AGGCCGAGGAAATACCAGCT 60.983 55.000 0.00 0.00 42.04 4.24
47 48 0.107165 GGCCGAGGAAATACCAGCTT 60.107 55.000 0.00 0.00 42.04 3.74
48 49 1.140252 GGCCGAGGAAATACCAGCTTA 59.860 52.381 0.00 0.00 42.04 3.09
49 50 2.210961 GCCGAGGAAATACCAGCTTAC 58.789 52.381 0.00 0.00 42.04 2.34
50 51 2.419574 GCCGAGGAAATACCAGCTTACA 60.420 50.000 0.00 0.00 42.04 2.41
51 52 3.195661 CCGAGGAAATACCAGCTTACAC 58.804 50.000 0.00 0.00 42.04 2.90
52 53 3.369052 CCGAGGAAATACCAGCTTACACA 60.369 47.826 0.00 0.00 42.04 3.72
53 54 4.442706 CGAGGAAATACCAGCTTACACAT 58.557 43.478 0.00 0.00 42.04 3.21
54 55 4.271049 CGAGGAAATACCAGCTTACACATG 59.729 45.833 0.00 0.00 42.04 3.21
55 56 4.526970 AGGAAATACCAGCTTACACATGG 58.473 43.478 0.00 0.00 42.04 3.66
56 57 3.632145 GGAAATACCAGCTTACACATGGG 59.368 47.826 0.00 0.00 38.48 4.00
57 58 4.523083 GAAATACCAGCTTACACATGGGA 58.477 43.478 0.00 0.00 38.48 4.37
58 59 3.845781 ATACCAGCTTACACATGGGAG 57.154 47.619 0.00 0.00 38.48 4.30
59 60 0.620556 ACCAGCTTACACATGGGAGG 59.379 55.000 0.00 0.00 38.48 4.30
60 61 0.749454 CCAGCTTACACATGGGAGGC 60.749 60.000 0.00 2.44 0.00 4.70
61 62 0.035152 CAGCTTACACATGGGAGGCA 60.035 55.000 0.00 0.00 0.00 4.75
62 63 0.035056 AGCTTACACATGGGAGGCAC 60.035 55.000 0.00 0.00 0.00 5.01
63 64 1.369091 GCTTACACATGGGAGGCACG 61.369 60.000 0.00 0.00 0.00 5.34
64 65 0.036388 CTTACACATGGGAGGCACGT 60.036 55.000 0.00 0.00 0.00 4.49
65 66 0.036765 TTACACATGGGAGGCACGTC 60.037 55.000 0.00 0.00 0.00 4.34
66 67 1.895020 TACACATGGGAGGCACGTCC 61.895 60.000 0.00 0.63 35.64 4.79
67 68 2.927856 ACATGGGAGGCACGTCCA 60.928 61.111 11.23 1.36 38.52 4.02
68 69 2.350895 CATGGGAGGCACGTCCAA 59.649 61.111 11.23 0.15 38.55 3.53
69 70 1.303236 CATGGGAGGCACGTCCAAA 60.303 57.895 11.23 0.00 38.55 3.28
70 71 0.680921 CATGGGAGGCACGTCCAAAT 60.681 55.000 11.23 2.09 38.55 2.32
71 72 0.916086 ATGGGAGGCACGTCCAAATA 59.084 50.000 11.23 0.00 38.55 1.40
72 73 0.251916 TGGGAGGCACGTCCAAATAG 59.748 55.000 11.23 0.00 38.52 1.73
73 74 0.539986 GGGAGGCACGTCCAAATAGA 59.460 55.000 11.23 0.00 38.52 1.98
74 75 1.065709 GGGAGGCACGTCCAAATAGAA 60.066 52.381 11.23 0.00 38.52 2.10
75 76 2.617021 GGGAGGCACGTCCAAATAGAAA 60.617 50.000 11.23 0.00 38.52 2.52
76 77 2.418976 GGAGGCACGTCCAAATAGAAAC 59.581 50.000 4.53 0.00 36.51 2.78
77 78 3.335579 GAGGCACGTCCAAATAGAAACT 58.664 45.455 6.78 0.00 37.29 2.66
78 79 4.501071 GAGGCACGTCCAAATAGAAACTA 58.499 43.478 6.78 0.00 37.29 2.24
79 80 4.504858 AGGCACGTCCAAATAGAAACTAG 58.495 43.478 6.78 0.00 37.29 2.57
80 81 4.020485 AGGCACGTCCAAATAGAAACTAGT 60.020 41.667 6.78 0.00 37.29 2.57
81 82 5.186409 AGGCACGTCCAAATAGAAACTAGTA 59.814 40.000 0.00 0.00 37.29 1.82
82 83 5.870978 GGCACGTCCAAATAGAAACTAGTAA 59.129 40.000 0.00 0.00 34.01 2.24
83 84 6.537660 GGCACGTCCAAATAGAAACTAGTAAT 59.462 38.462 0.00 0.00 34.01 1.89
84 85 7.707893 GGCACGTCCAAATAGAAACTAGTAATA 59.292 37.037 0.00 0.00 34.01 0.98
85 86 8.538039 GCACGTCCAAATAGAAACTAGTAATAC 58.462 37.037 0.00 0.00 0.00 1.89
86 87 9.577110 CACGTCCAAATAGAAACTAGTAATACA 57.423 33.333 0.00 0.00 0.00 2.29
87 88 9.798994 ACGTCCAAATAGAAACTAGTAATACAG 57.201 33.333 0.00 0.00 0.00 2.74
107 108 6.391227 ACAGAAATAAAACTCAACACCAGG 57.609 37.500 0.00 0.00 0.00 4.45
108 109 5.891551 ACAGAAATAAAACTCAACACCAGGT 59.108 36.000 0.00 0.00 0.00 4.00
109 110 6.379988 ACAGAAATAAAACTCAACACCAGGTT 59.620 34.615 0.00 0.00 41.47 3.50
110 111 7.558444 ACAGAAATAAAACTCAACACCAGGTTA 59.442 33.333 0.00 0.00 37.72 2.85
111 112 8.076178 CAGAAATAAAACTCAACACCAGGTTAG 58.924 37.037 0.00 0.00 37.72 2.34
112 113 6.894339 AATAAAACTCAACACCAGGTTAGG 57.106 37.500 0.00 0.00 37.72 2.69
113 114 2.951229 AACTCAACACCAGGTTAGGG 57.049 50.000 0.00 0.00 37.72 3.53
114 115 2.112279 ACTCAACACCAGGTTAGGGA 57.888 50.000 0.00 0.00 37.72 4.20
115 116 2.414612 ACTCAACACCAGGTTAGGGAA 58.585 47.619 0.00 0.00 37.72 3.97
116 117 2.986728 ACTCAACACCAGGTTAGGGAAT 59.013 45.455 0.00 0.00 37.72 3.01
117 118 3.397955 ACTCAACACCAGGTTAGGGAATT 59.602 43.478 0.00 0.00 37.72 2.17
118 119 4.141018 ACTCAACACCAGGTTAGGGAATTT 60.141 41.667 0.00 0.00 37.72 1.82
119 120 4.810345 TCAACACCAGGTTAGGGAATTTT 58.190 39.130 0.00 0.00 37.72 1.82
120 121 5.954757 TCAACACCAGGTTAGGGAATTTTA 58.045 37.500 0.00 0.00 37.72 1.52
121 122 6.374588 TCAACACCAGGTTAGGGAATTTTAA 58.625 36.000 0.00 0.00 37.72 1.52
122 123 6.492087 TCAACACCAGGTTAGGGAATTTTAAG 59.508 38.462 0.00 0.00 37.72 1.85
123 124 6.208840 ACACCAGGTTAGGGAATTTTAAGA 57.791 37.500 0.00 0.00 0.00 2.10
124 125 6.800890 ACACCAGGTTAGGGAATTTTAAGAT 58.199 36.000 0.00 0.00 0.00 2.40
125 126 7.246027 ACACCAGGTTAGGGAATTTTAAGATT 58.754 34.615 0.00 0.00 0.00 2.40
126 127 7.733047 ACACCAGGTTAGGGAATTTTAAGATTT 59.267 33.333 0.00 0.00 0.00 2.17
127 128 8.034804 CACCAGGTTAGGGAATTTTAAGATTTG 58.965 37.037 0.00 0.00 0.00 2.32
128 129 7.953493 ACCAGGTTAGGGAATTTTAAGATTTGA 59.047 33.333 0.00 0.00 0.00 2.69
129 130 8.811994 CCAGGTTAGGGAATTTTAAGATTTGAA 58.188 33.333 0.00 0.00 0.00 2.69
130 131 9.639601 CAGGTTAGGGAATTTTAAGATTTGAAC 57.360 33.333 0.00 0.00 0.00 3.18
131 132 8.812972 AGGTTAGGGAATTTTAAGATTTGAACC 58.187 33.333 12.36 12.36 0.00 3.62
132 133 8.812972 GGTTAGGGAATTTTAAGATTTGAACCT 58.187 33.333 12.69 10.89 0.00 3.50
133 134 9.856488 GTTAGGGAATTTTAAGATTTGAACCTC 57.144 33.333 7.83 0.00 0.00 3.85
134 135 7.482169 AGGGAATTTTAAGATTTGAACCTCC 57.518 36.000 0.00 0.00 0.00 4.30
135 136 7.248976 AGGGAATTTTAAGATTTGAACCTCCT 58.751 34.615 0.00 0.00 0.00 3.69
136 137 8.398743 AGGGAATTTTAAGATTTGAACCTCCTA 58.601 33.333 0.00 0.00 0.00 2.94
137 138 9.031537 GGGAATTTTAAGATTTGAACCTCCTAA 57.968 33.333 0.00 0.00 0.00 2.69
146 147 9.539194 AAGATTTGAACCTCCTAAGAAATCATT 57.461 29.630 0.00 0.00 33.94 2.57
147 148 9.539194 AGATTTGAACCTCCTAAGAAATCATTT 57.461 29.630 0.00 0.00 33.94 2.32
148 149 9.578439 GATTTGAACCTCCTAAGAAATCATTTG 57.422 33.333 0.00 0.00 32.49 2.32
149 150 7.466746 TTGAACCTCCTAAGAAATCATTTGG 57.533 36.000 0.00 0.00 0.00 3.28
150 151 5.951747 TGAACCTCCTAAGAAATCATTTGGG 59.048 40.000 0.00 0.00 0.00 4.12
151 152 5.796502 ACCTCCTAAGAAATCATTTGGGA 57.203 39.130 0.00 0.00 33.57 4.37
152 153 6.152638 ACCTCCTAAGAAATCATTTGGGAA 57.847 37.500 0.00 0.00 34.15 3.97
153 154 6.190587 ACCTCCTAAGAAATCATTTGGGAAG 58.809 40.000 0.00 0.00 34.15 3.46
154 155 5.068329 CCTCCTAAGAAATCATTTGGGAAGC 59.932 44.000 0.00 0.00 34.15 3.86
155 156 4.956075 TCCTAAGAAATCATTTGGGAAGCC 59.044 41.667 0.00 0.00 31.92 4.35
156 157 4.958581 CCTAAGAAATCATTTGGGAAGCCT 59.041 41.667 0.00 0.00 0.00 4.58
157 158 5.423290 CCTAAGAAATCATTTGGGAAGCCTT 59.577 40.000 0.00 0.00 0.00 4.35
158 159 5.830799 AAGAAATCATTTGGGAAGCCTTT 57.169 34.783 0.00 0.00 0.00 3.11
159 160 5.156608 AGAAATCATTTGGGAAGCCTTTG 57.843 39.130 0.00 0.00 0.00 2.77
160 161 3.339253 AATCATTTGGGAAGCCTTTGC 57.661 42.857 0.00 0.00 37.95 3.68
161 162 1.714541 TCATTTGGGAAGCCTTTGCA 58.285 45.000 0.00 0.00 41.13 4.08
162 163 1.619827 TCATTTGGGAAGCCTTTGCAG 59.380 47.619 0.00 0.00 41.13 4.41
163 164 1.345415 CATTTGGGAAGCCTTTGCAGT 59.655 47.619 0.00 0.00 41.13 4.40
164 165 1.039856 TTTGGGAAGCCTTTGCAGTC 58.960 50.000 0.00 0.00 41.13 3.51
165 166 0.185901 TTGGGAAGCCTTTGCAGTCT 59.814 50.000 0.00 0.00 41.13 3.24
166 167 0.250901 TGGGAAGCCTTTGCAGTCTC 60.251 55.000 0.00 0.00 41.13 3.36
167 168 0.037447 GGGAAGCCTTTGCAGTCTCT 59.963 55.000 0.00 0.00 41.13 3.10
168 169 1.546548 GGGAAGCCTTTGCAGTCTCTT 60.547 52.381 0.00 0.00 41.13 2.85
169 170 1.538950 GGAAGCCTTTGCAGTCTCTTG 59.461 52.381 0.00 0.00 41.13 3.02
170 171 2.498167 GAAGCCTTTGCAGTCTCTTGA 58.502 47.619 0.00 0.00 41.13 3.02
171 172 2.181954 AGCCTTTGCAGTCTCTTGAG 57.818 50.000 0.00 0.00 41.13 3.02
172 173 1.163554 GCCTTTGCAGTCTCTTGAGG 58.836 55.000 0.00 0.00 37.47 3.86
173 174 1.271054 GCCTTTGCAGTCTCTTGAGGA 60.271 52.381 0.00 0.00 37.47 3.71
174 175 2.617532 GCCTTTGCAGTCTCTTGAGGAT 60.618 50.000 0.00 0.00 37.47 3.24
175 176 3.008330 CCTTTGCAGTCTCTTGAGGATG 58.992 50.000 0.00 0.00 0.00 3.51
176 177 2.105006 TTGCAGTCTCTTGAGGATGC 57.895 50.000 15.82 15.82 0.00 3.91
177 178 0.251354 TGCAGTCTCTTGAGGATGCC 59.749 55.000 18.23 0.00 32.77 4.40
178 179 0.463474 GCAGTCTCTTGAGGATGCCC 60.463 60.000 13.30 0.00 0.00 5.36
180 181 2.392662 CAGTCTCTTGAGGATGCCCTA 58.607 52.381 0.00 0.00 44.53 3.53
181 182 2.102252 CAGTCTCTTGAGGATGCCCTAC 59.898 54.545 0.00 0.00 44.53 3.18
182 183 2.111384 GTCTCTTGAGGATGCCCTACA 58.889 52.381 0.00 0.00 44.53 2.74
183 184 2.111384 TCTCTTGAGGATGCCCTACAC 58.889 52.381 0.00 0.00 44.53 2.90
184 185 1.833630 CTCTTGAGGATGCCCTACACA 59.166 52.381 0.00 0.00 44.53 3.72
185 186 2.237143 CTCTTGAGGATGCCCTACACAA 59.763 50.000 0.00 0.00 44.53 3.33
186 187 2.642311 TCTTGAGGATGCCCTACACAAA 59.358 45.455 0.00 0.00 44.53 2.83
187 188 3.266772 TCTTGAGGATGCCCTACACAAAT 59.733 43.478 0.00 0.00 44.53 2.32
188 189 3.737559 TGAGGATGCCCTACACAAATT 57.262 42.857 0.00 0.00 44.53 1.82
189 190 4.853468 TGAGGATGCCCTACACAAATTA 57.147 40.909 0.00 0.00 44.53 1.40
190 191 5.186256 TGAGGATGCCCTACACAAATTAA 57.814 39.130 0.00 0.00 44.53 1.40
191 192 5.765510 TGAGGATGCCCTACACAAATTAAT 58.234 37.500 0.00 0.00 44.53 1.40
192 193 6.905736 TGAGGATGCCCTACACAAATTAATA 58.094 36.000 0.00 0.00 44.53 0.98
193 194 6.770785 TGAGGATGCCCTACACAAATTAATAC 59.229 38.462 0.00 0.00 44.53 1.89
194 195 6.911308 AGGATGCCCTACACAAATTAATACT 58.089 36.000 0.00 0.00 42.15 2.12
195 196 7.354312 AGGATGCCCTACACAAATTAATACTT 58.646 34.615 0.00 0.00 42.15 2.24
196 197 8.499406 AGGATGCCCTACACAAATTAATACTTA 58.501 33.333 0.00 0.00 42.15 2.24
197 198 9.297037 GGATGCCCTACACAAATTAATACTTAT 57.703 33.333 0.00 0.00 0.00 1.73
277 278 2.949644 ACGCATTGCTCCTATTAAACCC 59.050 45.455 7.12 0.00 0.00 4.11
279 280 3.243068 CGCATTGCTCCTATTAAACCCAC 60.243 47.826 7.12 0.00 0.00 4.61
281 282 3.706600 TTGCTCCTATTAAACCCACGT 57.293 42.857 0.00 0.00 0.00 4.49
327 328 2.223971 ACGAGCAAATACCTATCCCACG 60.224 50.000 0.00 0.00 0.00 4.94
354 355 7.622893 AAAAAGAAGCAAATGCCTACAAAAA 57.377 28.000 0.94 0.00 43.38 1.94
355 356 6.849588 AAAGAAGCAAATGCCTACAAAAAG 57.150 33.333 0.94 0.00 43.38 2.27
356 357 5.535753 AGAAGCAAATGCCTACAAAAAGT 57.464 34.783 0.94 0.00 43.38 2.66
357 358 5.291971 AGAAGCAAATGCCTACAAAAAGTG 58.708 37.500 0.94 0.00 43.38 3.16
358 359 4.670896 AGCAAATGCCTACAAAAAGTGT 57.329 36.364 0.94 0.00 42.60 3.55
361 362 6.758254 AGCAAATGCCTACAAAAAGTGTTAT 58.242 32.000 0.94 0.00 41.03 1.89
362 363 7.891561 AGCAAATGCCTACAAAAAGTGTTATA 58.108 30.769 0.94 0.00 41.03 0.98
363 364 7.812669 AGCAAATGCCTACAAAAAGTGTTATAC 59.187 33.333 0.94 0.00 41.03 1.47
364 365 7.812669 GCAAATGCCTACAAAAAGTGTTATACT 59.187 33.333 0.00 0.00 37.03 2.12
393 411 0.318120 GGTGCATCCACAAAAGTGGG 59.682 55.000 14.13 1.22 43.88 4.61
409 427 6.590234 AAAGTGGGGTCATATTTCTTTGAC 57.410 37.500 0.00 0.00 41.19 3.18
412 430 7.027874 AGTGGGGTCATATTTCTTTGACTTA 57.972 36.000 3.39 0.00 41.55 2.24
426 444 5.932303 TCTTTGACTTAGGTGTATTGTCTGC 59.068 40.000 0.00 0.00 0.00 4.26
436 454 2.036604 TGTATTGTCTGCTCACCGTTCA 59.963 45.455 0.00 0.00 0.00 3.18
440 458 1.344438 TGTCTGCTCACCGTTCAGAAT 59.656 47.619 0.00 0.00 38.42 2.40
446 464 2.766313 CTCACCGTTCAGAATGTCCAA 58.234 47.619 1.60 0.00 37.40 3.53
457 475 7.323656 CGTTCAGAATGTCCAAAGTTTATTGAC 59.676 37.037 0.00 0.00 37.40 3.18
461 479 9.311916 CAGAATGTCCAAAGTTTATTGACAAAA 57.688 29.630 14.85 0.00 31.84 2.44
480 498 8.967218 TGACAAAATTCGAAAATCATCACTTTC 58.033 29.630 0.00 0.00 0.00 2.62
496 514 8.048514 TCATCACTTTCAGAAATCATATCCACA 58.951 33.333 0.00 0.00 0.00 4.17
500 518 6.604396 ACTTTCAGAAATCATATCCACATGCA 59.396 34.615 0.00 0.00 0.00 3.96
512 530 8.258708 TCATATCCACATGCAAAAATGAATGAA 58.741 29.630 3.84 0.00 0.00 2.57
515 533 6.957150 TCCACATGCAAAAATGAATGAAAAC 58.043 32.000 3.84 0.00 0.00 2.43
518 536 8.011106 CCACATGCAAAAATGAATGAAAACTAC 58.989 33.333 3.84 0.00 0.00 2.73
519 537 8.767085 CACATGCAAAAATGAATGAAAACTACT 58.233 29.630 3.84 0.00 0.00 2.57
521 539 7.945033 TGCAAAAATGAATGAAAACTACTCC 57.055 32.000 0.00 0.00 0.00 3.85
523 541 7.154656 GCAAAAATGAATGAAAACTACTCCCT 58.845 34.615 0.00 0.00 0.00 4.20
524 542 7.329471 GCAAAAATGAATGAAAACTACTCCCTC 59.671 37.037 0.00 0.00 0.00 4.30
525 543 7.468141 AAAATGAATGAAAACTACTCCCTCC 57.532 36.000 0.00 0.00 0.00 4.30
529 547 3.672767 TGAAAACTACTCCCTCCGTTC 57.327 47.619 0.00 0.00 0.00 3.95
530 548 2.301009 TGAAAACTACTCCCTCCGTTCC 59.699 50.000 0.00 0.00 0.00 3.62
531 549 2.322339 AAACTACTCCCTCCGTTCCT 57.678 50.000 0.00 0.00 0.00 3.36
532 550 3.463048 AAACTACTCCCTCCGTTCCTA 57.537 47.619 0.00 0.00 0.00 2.94
533 551 3.463048 AACTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
534 552 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
535 553 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
536 554 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
537 555 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
538 556 6.856757 ACTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
539 557 7.300658 ACTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
540 558 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
541 559 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
542 560 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
543 561 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
544 562 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
545 563 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
546 564 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
547 565 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
548 566 9.379791 CTCCGTTCCTAAATATAAGTCTTTGTT 57.620 33.333 0.00 0.00 0.00 2.83
549 567 9.158233 TCCGTTCCTAAATATAAGTCTTTGTTG 57.842 33.333 0.00 0.00 0.00 3.33
550 568 9.158233 CCGTTCCTAAATATAAGTCTTTGTTGA 57.842 33.333 0.00 0.00 0.00 3.18
566 584 9.346725 GTCTTTGTTGAGATTTCATTATGAACC 57.653 33.333 7.19 3.10 35.89 3.62
567 585 9.076781 TCTTTGTTGAGATTTCATTATGAACCA 57.923 29.630 7.19 1.49 35.89 3.67
568 586 9.132521 CTTTGTTGAGATTTCATTATGAACCAC 57.867 33.333 7.19 2.67 35.89 4.16
569 587 7.757941 TGTTGAGATTTCATTATGAACCACA 57.242 32.000 7.19 5.12 35.89 4.17
570 588 8.352137 TGTTGAGATTTCATTATGAACCACAT 57.648 30.769 7.19 0.00 35.89 3.21
571 589 9.460019 TGTTGAGATTTCATTATGAACCACATA 57.540 29.630 7.19 0.00 35.89 2.29
572 590 9.722056 GTTGAGATTTCATTATGAACCACATAC 57.278 33.333 7.19 0.00 40.62 2.39
573 591 8.141835 TGAGATTTCATTATGAACCACATACG 57.858 34.615 7.19 0.00 40.62 3.06
574 592 7.226523 TGAGATTTCATTATGAACCACATACGG 59.773 37.037 7.19 0.00 40.62 4.02
575 593 7.279615 AGATTTCATTATGAACCACATACGGA 58.720 34.615 7.19 0.00 40.62 4.69
576 594 7.939039 AGATTTCATTATGAACCACATACGGAT 59.061 33.333 7.19 0.00 40.62 4.18
577 595 6.859420 TTCATTATGAACCACATACGGATG 57.141 37.500 5.94 5.94 40.62 3.51
578 596 6.353323 TTCATTATGAACCACATACGGATGT 58.647 36.000 7.68 7.68 40.62 3.06
579 597 7.056844 TCATTATGAACCACATACGGATGTA 57.943 36.000 14.23 0.00 44.82 2.29
580 598 7.676004 TCATTATGAACCACATACGGATGTAT 58.324 34.615 14.23 5.54 44.82 2.29
581 599 8.808092 TCATTATGAACCACATACGGATGTATA 58.192 33.333 14.23 4.47 44.82 1.47
582 600 9.599866 CATTATGAACCACATACGGATGTATAT 57.400 33.333 14.23 1.68 44.82 0.86
585 603 8.589701 ATGAACCACATACGGATGTATATAGA 57.410 34.615 14.23 0.00 44.82 1.98
586 604 8.589701 TGAACCACATACGGATGTATATAGAT 57.410 34.615 14.23 0.00 44.82 1.98
587 605 9.689501 TGAACCACATACGGATGTATATAGATA 57.310 33.333 14.23 0.00 44.82 1.98
588 606 9.947669 GAACCACATACGGATGTATATAGATAC 57.052 37.037 14.23 0.35 44.82 2.24
620 638 9.520204 AAGTATGAATTCATTTATTTTGCTCCG 57.480 29.630 25.26 0.00 37.76 4.63
621 639 8.686334 AGTATGAATTCATTTATTTTGCTCCGT 58.314 29.630 25.26 0.00 37.76 4.69
622 640 9.944663 GTATGAATTCATTTATTTTGCTCCGTA 57.055 29.630 25.26 0.00 37.76 4.02
630 648 9.431887 TCATTTATTTTGCTCCGTATATAGTCC 57.568 33.333 0.00 0.00 0.00 3.85
631 649 9.214957 CATTTATTTTGCTCCGTATATAGTCCA 57.785 33.333 0.00 0.00 0.00 4.02
632 650 9.959721 ATTTATTTTGCTCCGTATATAGTCCAT 57.040 29.630 0.00 0.00 0.00 3.41
633 651 8.997621 TTATTTTGCTCCGTATATAGTCCATC 57.002 34.615 0.00 0.00 0.00 3.51
634 652 6.665992 TTTTGCTCCGTATATAGTCCATCT 57.334 37.500 0.00 0.00 0.00 2.90
635 653 7.770366 TTTTGCTCCGTATATAGTCCATCTA 57.230 36.000 0.00 0.00 0.00 1.98
636 654 7.392494 TTTGCTCCGTATATAGTCCATCTAG 57.608 40.000 0.00 0.00 31.67 2.43
637 655 6.063496 TGCTCCGTATATAGTCCATCTAGT 57.937 41.667 0.00 0.00 31.67 2.57
638 656 5.880887 TGCTCCGTATATAGTCCATCTAGTG 59.119 44.000 0.00 0.00 31.67 2.74
639 657 6.114089 GCTCCGTATATAGTCCATCTAGTGA 58.886 44.000 0.00 0.00 31.67 3.41
640 658 6.598457 GCTCCGTATATAGTCCATCTAGTGAA 59.402 42.308 0.00 0.00 31.67 3.18
641 659 7.120873 GCTCCGTATATAGTCCATCTAGTGAAA 59.879 40.741 0.00 0.00 31.67 2.69
642 660 9.179909 CTCCGTATATAGTCCATCTAGTGAAAT 57.820 37.037 0.00 0.00 31.67 2.17
643 661 9.175312 TCCGTATATAGTCCATCTAGTGAAATC 57.825 37.037 0.00 0.00 31.67 2.17
644 662 9.179909 CCGTATATAGTCCATCTAGTGAAATCT 57.820 37.037 0.00 0.00 31.67 2.40
652 670 8.043710 AGTCCATCTAGTGAAATCTTTACAAGG 58.956 37.037 0.00 0.00 0.00 3.61
653 671 8.041323 GTCCATCTAGTGAAATCTTTACAAGGA 58.959 37.037 0.00 0.00 0.00 3.36
654 672 8.041323 TCCATCTAGTGAAATCTTTACAAGGAC 58.959 37.037 0.00 0.00 0.00 3.85
655 673 8.043710 CCATCTAGTGAAATCTTTACAAGGACT 58.956 37.037 0.00 0.00 0.00 3.85
656 674 9.442047 CATCTAGTGAAATCTTTACAAGGACTT 57.558 33.333 0.00 0.00 0.00 3.01
658 676 9.924650 TCTAGTGAAATCTTTACAAGGACTTAC 57.075 33.333 0.00 0.00 0.00 2.34
659 677 9.706691 CTAGTGAAATCTTTACAAGGACTTACA 57.293 33.333 0.00 0.00 0.00 2.41
661 679 9.574516 AGTGAAATCTTTACAAGGACTTACATT 57.425 29.630 0.00 0.00 0.00 2.71
670 688 9.733219 TTTACAAGGACTTACATTTAAAAACGG 57.267 29.630 0.00 0.00 0.00 4.44
671 689 7.571080 ACAAGGACTTACATTTAAAAACGGA 57.429 32.000 0.00 0.00 0.00 4.69
672 690 7.645402 ACAAGGACTTACATTTAAAAACGGAG 58.355 34.615 0.00 0.00 0.00 4.63
673 691 6.812879 AGGACTTACATTTAAAAACGGAGG 57.187 37.500 0.00 0.00 0.00 4.30
674 692 5.708697 AGGACTTACATTTAAAAACGGAGGG 59.291 40.000 0.00 0.00 0.00 4.30
675 693 5.706833 GGACTTACATTTAAAAACGGAGGGA 59.293 40.000 0.00 0.00 0.00 4.20
676 694 6.128090 GGACTTACATTTAAAAACGGAGGGAG 60.128 42.308 0.00 0.00 0.00 4.30
690 708 3.010420 GGAGGGAGTATTTTGACAGTGC 58.990 50.000 0.00 0.00 0.00 4.40
705 723 9.545105 TTTTGACAGTGCTGAATGAATTTTAAT 57.455 25.926 6.17 0.00 0.00 1.40
742 786 0.037447 AGGCAGAAGCAAAGGTCTCC 59.963 55.000 0.00 0.00 44.61 3.71
745 789 1.948144 GCAGAAGCAAAGGTCTCCTCC 60.948 57.143 0.00 0.00 41.58 4.30
747 791 0.321996 GAAGCAAAGGTCTCCTCCGT 59.678 55.000 0.00 0.00 30.89 4.69
754 798 3.075641 GTCTCCTCCGTCACCCCC 61.076 72.222 0.00 0.00 0.00 5.40
755 799 3.596799 TCTCCTCCGTCACCCCCA 61.597 66.667 0.00 0.00 0.00 4.96
756 800 3.391382 CTCCTCCGTCACCCCCAC 61.391 72.222 0.00 0.00 0.00 4.61
831 875 4.531426 GCCCCACACCACACCCAA 62.531 66.667 0.00 0.00 0.00 4.12
832 876 2.520741 CCCCACACCACACCCAAC 60.521 66.667 0.00 0.00 0.00 3.77
833 877 2.520741 CCCACACCACACCCAACC 60.521 66.667 0.00 0.00 0.00 3.77
834 878 2.520741 CCACACCACACCCAACCC 60.521 66.667 0.00 0.00 0.00 4.11
835 879 2.904866 CACACCACACCCAACCCG 60.905 66.667 0.00 0.00 0.00 5.28
836 880 3.091190 ACACCACACCCAACCCGA 61.091 61.111 0.00 0.00 0.00 5.14
837 881 2.281484 CACCACACCCAACCCGAG 60.281 66.667 0.00 0.00 0.00 4.63
890 934 2.677875 GCCTGGCCTCAACCCAAG 60.678 66.667 7.66 0.00 30.66 3.61
891 935 2.846532 CCTGGCCTCAACCCAAGT 59.153 61.111 3.32 0.00 30.66 3.16
892 936 2.074967 CCTGGCCTCAACCCAAGTA 58.925 57.895 3.32 0.00 30.66 2.24
893 937 0.322546 CCTGGCCTCAACCCAAGTAC 60.323 60.000 3.32 0.00 30.66 2.73
895 939 1.063070 TGGCCTCAACCCAAGTACCA 61.063 55.000 3.32 0.00 0.00 3.25
896 940 0.111639 GGCCTCAACCCAAGTACCAA 59.888 55.000 0.00 0.00 0.00 3.67
897 941 1.244816 GCCTCAACCCAAGTACCAAC 58.755 55.000 0.00 0.00 0.00 3.77
898 942 1.905637 CCTCAACCCAAGTACCAACC 58.094 55.000 0.00 0.00 0.00 3.77
899 943 1.546998 CCTCAACCCAAGTACCAACCC 60.547 57.143 0.00 0.00 0.00 4.11
900 944 1.144093 CTCAACCCAAGTACCAACCCA 59.856 52.381 0.00 0.00 0.00 4.51
901 945 1.569548 TCAACCCAAGTACCAACCCAA 59.430 47.619 0.00 0.00 0.00 4.12
902 946 1.960689 CAACCCAAGTACCAACCCAAG 59.039 52.381 0.00 0.00 0.00 3.61
969 1018 2.372074 ACACCACACCACTCCCGTT 61.372 57.895 0.00 0.00 0.00 4.44
981 1030 2.670592 CCCGTTCCGTTTCCCCAC 60.671 66.667 0.00 0.00 0.00 4.61
1121 1177 3.040990 CGAGTACTCGCTCTACAACAG 57.959 52.381 30.44 2.09 46.50 3.16
1159 1215 0.109272 GGTCTGCGACGAGATCAACA 60.109 55.000 0.00 0.00 32.65 3.33
1216 1272 2.060980 GCCATGTCCTCCCTCGTCT 61.061 63.158 0.00 0.00 0.00 4.18
1237 1293 3.881019 AACCTCTCCCTCGCCGACA 62.881 63.158 0.00 0.00 0.00 4.35
1459 1515 1.758592 GCCACCTACACCAAGTCCA 59.241 57.895 0.00 0.00 0.00 4.02
1722 1778 1.817099 GGATCTGGGCAAGCTCACG 60.817 63.158 0.00 0.00 0.00 4.35
2090 2146 1.201647 CTCGCCTAAGTCCGACAAGAA 59.798 52.381 0.40 0.00 0.00 2.52
2151 2207 2.737180 CCCGCTGATACGCCTGAT 59.263 61.111 0.00 0.00 0.00 2.90
2329 2386 1.758783 GCACTCGTTTTGCTTTCCTG 58.241 50.000 0.00 0.00 37.00 3.86
2330 2387 1.065551 GCACTCGTTTTGCTTTCCTGT 59.934 47.619 0.00 0.00 37.00 4.00
2331 2388 2.719798 CACTCGTTTTGCTTTCCTGTG 58.280 47.619 0.00 0.00 0.00 3.66
2332 2389 1.676006 ACTCGTTTTGCTTTCCTGTGG 59.324 47.619 0.00 0.00 0.00 4.17
2333 2390 1.001378 CTCGTTTTGCTTTCCTGTGGG 60.001 52.381 0.00 0.00 0.00 4.61
2334 2391 0.597377 CGTTTTGCTTTCCTGTGGGC 60.597 55.000 0.00 0.00 0.00 5.36
2335 2392 0.597377 GTTTTGCTTTCCTGTGGGCG 60.597 55.000 0.00 0.00 0.00 6.13
2336 2393 2.362329 TTTTGCTTTCCTGTGGGCGC 62.362 55.000 0.00 0.00 0.00 6.53
2357 2414 2.283298 GAATGATGTGATGCACTCCGT 58.717 47.619 0.00 0.00 35.11 4.69
2398 2455 1.677576 GCCATTGAAATGCTCATCCGA 59.322 47.619 0.00 0.00 35.08 4.55
2401 2458 3.379372 CCATTGAAATGCTCATCCGAAGT 59.621 43.478 0.00 0.00 35.08 3.01
2444 2503 3.615155 TCATTTGGGCGATTGTGATACA 58.385 40.909 0.00 0.00 0.00 2.29
2462 2527 3.434940 ACATTCCCTGGTAGTTTCACC 57.565 47.619 0.00 0.00 39.20 4.02
2469 2534 0.250727 TGGTAGTTTCACCAGCTGCC 60.251 55.000 8.66 0.79 43.76 4.85
2475 2544 2.106511 AGTTTCACCAGCTGCCTAGAAA 59.893 45.455 8.66 11.86 0.00 2.52
2482 2551 5.602561 TCACCAGCTGCCTAGAAATCTATTA 59.397 40.000 8.66 0.00 0.00 0.98
2589 2662 7.651304 AGTTATCTTGCATTCTCGATGAAGTAG 59.349 37.037 0.00 0.00 38.03 2.57
2598 2671 4.486090 TCTCGATGAAGTAGCTTGTGAAC 58.514 43.478 0.00 0.00 0.00 3.18
2615 2691 7.095060 GCTTGTGAACAGAGATTTGATCTTACA 60.095 37.037 0.00 0.00 40.38 2.41
2639 2715 4.530094 TTAATCGATGCATTGGTTCGTC 57.470 40.909 15.93 0.00 34.60 4.20
2643 2719 1.656594 CGATGCATTGGTTCGTCGTAA 59.343 47.619 5.98 0.00 37.07 3.18
2718 2807 1.261354 CCGATTGATATGTGTGCCACG 59.739 52.381 0.00 0.00 37.14 4.94
2760 2849 1.078426 GTTGGCCTACTGGATGCGT 60.078 57.895 10.33 0.00 34.57 5.24
2763 2852 1.299926 GGCCTACTGGATGCGTACG 60.300 63.158 11.84 11.84 34.57 3.67
2768 2857 2.412455 CCTACTGGATGCGTACGTATCG 60.412 54.545 31.01 23.26 37.97 2.92
2769 2858 1.302366 ACTGGATGCGTACGTATCGA 58.698 50.000 31.01 27.80 37.97 3.59
2779 2868 3.661270 GCGTACGTATCGATGAAAGTACC 59.339 47.826 17.90 7.43 33.10 3.34
2780 2869 4.214437 CGTACGTATCGATGAAAGTACCC 58.786 47.826 8.54 0.00 33.10 3.69
2781 2870 3.722728 ACGTATCGATGAAAGTACCCC 57.277 47.619 8.54 0.00 0.00 4.95
2782 2871 3.294214 ACGTATCGATGAAAGTACCCCT 58.706 45.455 8.54 0.00 0.00 4.79
2783 2872 4.464008 ACGTATCGATGAAAGTACCCCTA 58.536 43.478 8.54 0.00 0.00 3.53
2784 2873 4.276926 ACGTATCGATGAAAGTACCCCTAC 59.723 45.833 8.54 0.00 0.00 3.18
2785 2874 4.276678 CGTATCGATGAAAGTACCCCTACA 59.723 45.833 8.54 0.00 0.00 2.74
2786 2875 5.221106 CGTATCGATGAAAGTACCCCTACAA 60.221 44.000 8.54 0.00 0.00 2.41
2787 2876 4.730949 TCGATGAAAGTACCCCTACAAG 57.269 45.455 0.00 0.00 0.00 3.16
2788 2877 3.118884 TCGATGAAAGTACCCCTACAAGC 60.119 47.826 0.00 0.00 0.00 4.01
2789 2878 2.754946 TGAAAGTACCCCTACAAGCG 57.245 50.000 0.00 0.00 0.00 4.68
2790 2879 1.972795 TGAAAGTACCCCTACAAGCGT 59.027 47.619 0.00 0.00 0.00 5.07
2791 2880 2.289195 TGAAAGTACCCCTACAAGCGTG 60.289 50.000 0.00 0.00 0.00 5.34
2931 3022 4.413800 GGGCGCGCGGTCAAAAAT 62.414 61.111 33.06 0.00 0.00 1.82
3015 3106 0.682855 CGCACTCTCTCCCTCTCCTT 60.683 60.000 0.00 0.00 0.00 3.36
3023 3114 2.000803 TCTCCCTCTCCTTGTCCTACA 58.999 52.381 0.00 0.00 0.00 2.74
3148 3768 1.377987 GAAGGTACCCAATGCGGCA 60.378 57.895 8.74 4.58 0.00 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.874390 ACGATCATGGTTGTGTGTGC 59.126 50.000 0.00 0.00 0.00 4.57
1 2 2.158254 CAGACGATCATGGTTGTGTGTG 59.842 50.000 14.11 3.11 0.00 3.82
2 3 2.416747 CAGACGATCATGGTTGTGTGT 58.583 47.619 14.11 0.00 0.00 3.72
3 4 1.129251 GCAGACGATCATGGTTGTGTG 59.871 52.381 17.31 17.31 31.69 3.82
4 5 1.442769 GCAGACGATCATGGTTGTGT 58.557 50.000 2.74 0.00 0.00 3.72
5 6 0.371301 CGCAGACGATCATGGTTGTG 59.629 55.000 2.74 0.00 43.93 3.33
6 7 0.740868 CCGCAGACGATCATGGTTGT 60.741 55.000 0.00 0.00 43.93 3.32
7 8 0.460109 TCCGCAGACGATCATGGTTG 60.460 55.000 0.00 0.00 43.93 3.77
8 9 0.249120 TTCCGCAGACGATCATGGTT 59.751 50.000 0.00 0.00 43.93 3.67
9 10 0.179100 CTTCCGCAGACGATCATGGT 60.179 55.000 0.00 0.00 43.93 3.55
10 11 0.877649 CCTTCCGCAGACGATCATGG 60.878 60.000 0.00 0.00 43.93 3.66
11 12 1.493950 GCCTTCCGCAGACGATCATG 61.494 60.000 0.00 0.00 43.93 3.07
12 13 1.227380 GCCTTCCGCAGACGATCAT 60.227 57.895 0.00 0.00 43.93 2.45
13 14 2.184322 GCCTTCCGCAGACGATCA 59.816 61.111 0.00 0.00 43.93 2.92
14 15 2.586357 GGCCTTCCGCAGACGATC 60.586 66.667 0.00 0.00 43.93 3.69
24 25 0.544697 TGGTATTTCCTCGGCCTTCC 59.455 55.000 0.00 0.00 37.07 3.46
25 26 1.954927 CTGGTATTTCCTCGGCCTTC 58.045 55.000 0.00 0.00 37.07 3.46
26 27 0.107165 GCTGGTATTTCCTCGGCCTT 60.107 55.000 0.00 0.00 37.07 4.35
27 28 0.983378 AGCTGGTATTTCCTCGGCCT 60.983 55.000 0.00 0.00 37.07 5.19
28 29 0.107165 AAGCTGGTATTTCCTCGGCC 60.107 55.000 0.00 0.00 37.07 6.13
29 30 2.210961 GTAAGCTGGTATTTCCTCGGC 58.789 52.381 0.00 0.00 37.07 5.54
30 31 3.195661 GTGTAAGCTGGTATTTCCTCGG 58.804 50.000 0.00 0.00 37.07 4.63
31 32 3.857052 TGTGTAAGCTGGTATTTCCTCG 58.143 45.455 0.00 0.00 37.07 4.63
32 33 4.576463 CCATGTGTAAGCTGGTATTTCCTC 59.424 45.833 0.00 0.00 37.07 3.71
33 34 4.526970 CCATGTGTAAGCTGGTATTTCCT 58.473 43.478 0.00 0.00 37.07 3.36
34 35 3.632145 CCCATGTGTAAGCTGGTATTTCC 59.368 47.826 0.00 0.00 0.00 3.13
35 36 4.523083 TCCCATGTGTAAGCTGGTATTTC 58.477 43.478 0.00 0.00 0.00 2.17
36 37 4.526970 CTCCCATGTGTAAGCTGGTATTT 58.473 43.478 0.00 0.00 0.00 1.40
37 38 3.117888 CCTCCCATGTGTAAGCTGGTATT 60.118 47.826 0.00 0.00 0.00 1.89
38 39 2.439507 CCTCCCATGTGTAAGCTGGTAT 59.560 50.000 0.00 0.00 0.00 2.73
39 40 1.837439 CCTCCCATGTGTAAGCTGGTA 59.163 52.381 0.00 0.00 0.00 3.25
40 41 0.620556 CCTCCCATGTGTAAGCTGGT 59.379 55.000 0.00 0.00 0.00 4.00
41 42 0.749454 GCCTCCCATGTGTAAGCTGG 60.749 60.000 0.00 0.00 0.00 4.85
42 43 0.035152 TGCCTCCCATGTGTAAGCTG 60.035 55.000 0.00 0.00 0.00 4.24
43 44 0.035056 GTGCCTCCCATGTGTAAGCT 60.035 55.000 0.00 0.00 0.00 3.74
44 45 1.369091 CGTGCCTCCCATGTGTAAGC 61.369 60.000 0.00 0.00 0.00 3.09
45 46 0.036388 ACGTGCCTCCCATGTGTAAG 60.036 55.000 0.00 0.00 42.01 2.34
46 47 0.036765 GACGTGCCTCCCATGTGTAA 60.037 55.000 0.00 0.00 43.58 2.41
47 48 1.594833 GACGTGCCTCCCATGTGTA 59.405 57.895 0.00 0.00 43.58 2.90
48 49 2.347490 GACGTGCCTCCCATGTGT 59.653 61.111 0.00 0.00 43.58 3.72
49 50 2.436646 GGACGTGCCTCCCATGTG 60.437 66.667 0.00 0.00 43.58 3.21
50 51 2.063015 TTTGGACGTGCCTCCCATGT 62.063 55.000 4.04 0.00 46.14 3.21
51 52 0.680921 ATTTGGACGTGCCTCCCATG 60.681 55.000 4.04 0.00 37.63 3.66
52 53 0.916086 TATTTGGACGTGCCTCCCAT 59.084 50.000 4.04 0.00 37.63 4.00
53 54 0.251916 CTATTTGGACGTGCCTCCCA 59.748 55.000 4.04 0.00 37.63 4.37
54 55 0.539986 TCTATTTGGACGTGCCTCCC 59.460 55.000 4.04 0.00 37.63 4.30
55 56 2.396590 TTCTATTTGGACGTGCCTCC 57.603 50.000 4.04 0.00 37.63 4.30
56 57 3.335579 AGTTTCTATTTGGACGTGCCTC 58.664 45.455 4.04 0.00 37.63 4.70
57 58 3.418684 AGTTTCTATTTGGACGTGCCT 57.581 42.857 4.04 0.00 37.63 4.75
58 59 4.251268 ACTAGTTTCTATTTGGACGTGCC 58.749 43.478 4.04 0.43 37.10 5.01
59 60 6.956299 TTACTAGTTTCTATTTGGACGTGC 57.044 37.500 0.00 0.00 0.00 5.34
60 61 9.577110 TGTATTACTAGTTTCTATTTGGACGTG 57.423 33.333 0.00 0.00 0.00 4.49
61 62 9.798994 CTGTATTACTAGTTTCTATTTGGACGT 57.201 33.333 0.00 0.00 0.00 4.34
81 82 8.576442 CCTGGTGTTGAGTTTTATTTCTGTATT 58.424 33.333 0.00 0.00 0.00 1.89
82 83 7.724061 ACCTGGTGTTGAGTTTTATTTCTGTAT 59.276 33.333 0.00 0.00 0.00 2.29
83 84 7.057894 ACCTGGTGTTGAGTTTTATTTCTGTA 58.942 34.615 0.00 0.00 0.00 2.74
84 85 5.891551 ACCTGGTGTTGAGTTTTATTTCTGT 59.108 36.000 0.00 0.00 0.00 3.41
85 86 6.391227 ACCTGGTGTTGAGTTTTATTTCTG 57.609 37.500 0.00 0.00 0.00 3.02
86 87 7.230712 CCTAACCTGGTGTTGAGTTTTATTTCT 59.769 37.037 0.00 0.00 37.83 2.52
87 88 7.368059 CCTAACCTGGTGTTGAGTTTTATTTC 58.632 38.462 0.00 0.00 37.83 2.17
88 89 6.266786 CCCTAACCTGGTGTTGAGTTTTATTT 59.733 38.462 0.00 0.00 37.83 1.40
89 90 5.773176 CCCTAACCTGGTGTTGAGTTTTATT 59.227 40.000 0.00 0.00 37.83 1.40
90 91 5.073965 TCCCTAACCTGGTGTTGAGTTTTAT 59.926 40.000 0.00 0.00 37.83 1.40
91 92 4.412858 TCCCTAACCTGGTGTTGAGTTTTA 59.587 41.667 0.00 0.00 37.83 1.52
92 93 3.203487 TCCCTAACCTGGTGTTGAGTTTT 59.797 43.478 0.00 0.00 37.83 2.43
93 94 2.781174 TCCCTAACCTGGTGTTGAGTTT 59.219 45.455 0.00 0.00 37.83 2.66
94 95 2.414612 TCCCTAACCTGGTGTTGAGTT 58.585 47.619 0.00 0.00 37.83 3.01
95 96 2.112279 TCCCTAACCTGGTGTTGAGT 57.888 50.000 0.00 0.00 37.83 3.41
96 97 3.721087 ATTCCCTAACCTGGTGTTGAG 57.279 47.619 0.00 0.00 37.83 3.02
97 98 4.463050 AAATTCCCTAACCTGGTGTTGA 57.537 40.909 0.00 0.00 37.83 3.18
98 99 6.492087 TCTTAAAATTCCCTAACCTGGTGTTG 59.508 38.462 0.00 0.00 37.83 3.33
99 100 6.616577 TCTTAAAATTCCCTAACCTGGTGTT 58.383 36.000 0.00 0.00 41.11 3.32
100 101 6.208840 TCTTAAAATTCCCTAACCTGGTGT 57.791 37.500 0.00 0.00 0.00 4.16
101 102 7.718334 AATCTTAAAATTCCCTAACCTGGTG 57.282 36.000 0.00 0.00 0.00 4.17
102 103 7.953493 TCAAATCTTAAAATTCCCTAACCTGGT 59.047 33.333 0.00 0.00 0.00 4.00
103 104 8.361169 TCAAATCTTAAAATTCCCTAACCTGG 57.639 34.615 0.00 0.00 0.00 4.45
104 105 9.639601 GTTCAAATCTTAAAATTCCCTAACCTG 57.360 33.333 0.00 0.00 0.00 4.00
105 106 8.812972 GGTTCAAATCTTAAAATTCCCTAACCT 58.187 33.333 0.00 0.00 0.00 3.50
106 107 8.812972 AGGTTCAAATCTTAAAATTCCCTAACC 58.187 33.333 0.00 0.00 0.00 2.85
107 108 9.856488 GAGGTTCAAATCTTAAAATTCCCTAAC 57.144 33.333 0.00 0.00 0.00 2.34
108 109 9.031537 GGAGGTTCAAATCTTAAAATTCCCTAA 57.968 33.333 0.00 0.00 0.00 2.69
109 110 8.398743 AGGAGGTTCAAATCTTAAAATTCCCTA 58.601 33.333 0.00 0.00 0.00 3.53
110 111 7.248976 AGGAGGTTCAAATCTTAAAATTCCCT 58.751 34.615 0.00 0.00 0.00 4.20
111 112 7.482169 AGGAGGTTCAAATCTTAAAATTCCC 57.518 36.000 0.00 0.00 0.00 3.97
120 121 9.539194 AATGATTTCTTAGGAGGTTCAAATCTT 57.461 29.630 0.00 0.00 33.34 2.40
121 122 9.539194 AAATGATTTCTTAGGAGGTTCAAATCT 57.461 29.630 0.00 0.00 33.34 2.40
122 123 9.578439 CAAATGATTTCTTAGGAGGTTCAAATC 57.422 33.333 0.00 0.00 32.96 2.17
123 124 8.534496 CCAAATGATTTCTTAGGAGGTTCAAAT 58.466 33.333 0.00 0.00 0.00 2.32
124 125 7.039082 CCCAAATGATTTCTTAGGAGGTTCAAA 60.039 37.037 0.00 0.00 0.00 2.69
125 126 6.437162 CCCAAATGATTTCTTAGGAGGTTCAA 59.563 38.462 0.00 0.00 0.00 2.69
126 127 5.951747 CCCAAATGATTTCTTAGGAGGTTCA 59.048 40.000 0.00 0.00 0.00 3.18
127 128 6.187682 TCCCAAATGATTTCTTAGGAGGTTC 58.812 40.000 0.00 0.00 0.00 3.62
128 129 6.152638 TCCCAAATGATTTCTTAGGAGGTT 57.847 37.500 0.00 0.00 0.00 3.50
129 130 5.796502 TCCCAAATGATTTCTTAGGAGGT 57.203 39.130 0.00 0.00 0.00 3.85
130 131 5.068329 GCTTCCCAAATGATTTCTTAGGAGG 59.932 44.000 0.00 0.00 0.00 4.30
131 132 5.068329 GGCTTCCCAAATGATTTCTTAGGAG 59.932 44.000 0.00 0.00 0.00 3.69
132 133 4.956075 GGCTTCCCAAATGATTTCTTAGGA 59.044 41.667 0.00 0.00 0.00 2.94
133 134 4.958581 AGGCTTCCCAAATGATTTCTTAGG 59.041 41.667 0.00 0.00 0.00 2.69
134 135 6.535963 AAGGCTTCCCAAATGATTTCTTAG 57.464 37.500 0.00 0.00 0.00 2.18
135 136 6.700352 CAAAGGCTTCCCAAATGATTTCTTA 58.300 36.000 0.00 0.00 0.00 2.10
136 137 5.554070 CAAAGGCTTCCCAAATGATTTCTT 58.446 37.500 0.00 0.00 0.00 2.52
137 138 4.564199 GCAAAGGCTTCCCAAATGATTTCT 60.564 41.667 0.00 0.00 36.96 2.52
138 139 3.686241 GCAAAGGCTTCCCAAATGATTTC 59.314 43.478 0.00 0.00 36.96 2.17
139 140 3.072768 TGCAAAGGCTTCCCAAATGATTT 59.927 39.130 0.00 0.00 41.91 2.17
140 141 2.638855 TGCAAAGGCTTCCCAAATGATT 59.361 40.909 0.00 0.00 41.91 2.57
141 142 2.235402 CTGCAAAGGCTTCCCAAATGAT 59.765 45.455 0.00 0.00 41.91 2.45
142 143 1.619827 CTGCAAAGGCTTCCCAAATGA 59.380 47.619 0.00 0.00 41.91 2.57
143 144 1.345415 ACTGCAAAGGCTTCCCAAATG 59.655 47.619 0.00 0.00 41.91 2.32
144 145 1.620323 GACTGCAAAGGCTTCCCAAAT 59.380 47.619 0.00 0.00 41.91 2.32
145 146 1.039856 GACTGCAAAGGCTTCCCAAA 58.960 50.000 0.00 0.00 41.91 3.28
146 147 0.185901 AGACTGCAAAGGCTTCCCAA 59.814 50.000 0.00 0.00 41.91 4.12
147 148 0.250901 GAGACTGCAAAGGCTTCCCA 60.251 55.000 0.00 0.00 41.91 4.37
148 149 0.037447 AGAGACTGCAAAGGCTTCCC 59.963 55.000 0.00 0.00 41.91 3.97
149 150 1.538950 CAAGAGACTGCAAAGGCTTCC 59.461 52.381 0.00 0.00 41.91 3.46
150 151 2.483491 CTCAAGAGACTGCAAAGGCTTC 59.517 50.000 0.00 0.00 41.91 3.86
151 152 2.502295 CTCAAGAGACTGCAAAGGCTT 58.498 47.619 0.00 0.00 41.91 4.35
152 153 1.271271 CCTCAAGAGACTGCAAAGGCT 60.271 52.381 0.00 0.00 41.91 4.58
153 154 1.163554 CCTCAAGAGACTGCAAAGGC 58.836 55.000 0.00 0.00 41.68 4.35
154 155 2.847327 TCCTCAAGAGACTGCAAAGG 57.153 50.000 0.00 0.00 0.00 3.11
155 156 2.419324 GCATCCTCAAGAGACTGCAAAG 59.581 50.000 14.72 0.00 36.40 2.77
156 157 2.430465 GCATCCTCAAGAGACTGCAAA 58.570 47.619 14.72 0.00 36.40 3.68
157 158 1.339438 GGCATCCTCAAGAGACTGCAA 60.339 52.381 18.73 0.00 37.37 4.08
158 159 0.251354 GGCATCCTCAAGAGACTGCA 59.749 55.000 18.73 0.00 37.37 4.41
159 160 0.463474 GGGCATCCTCAAGAGACTGC 60.463 60.000 12.50 12.50 35.97 4.40
160 161 1.202330 AGGGCATCCTCAAGAGACTG 58.798 55.000 0.00 0.00 39.80 3.51
161 162 2.292521 TGTAGGGCATCCTCAAGAGACT 60.293 50.000 0.00 0.00 43.66 3.24
162 163 2.111384 TGTAGGGCATCCTCAAGAGAC 58.889 52.381 0.00 0.00 43.66 3.36
163 164 2.111384 GTGTAGGGCATCCTCAAGAGA 58.889 52.381 0.00 0.00 43.66 3.10
164 165 1.833630 TGTGTAGGGCATCCTCAAGAG 59.166 52.381 0.00 0.00 43.66 2.85
165 166 1.951209 TGTGTAGGGCATCCTCAAGA 58.049 50.000 0.00 0.00 43.66 3.02
166 167 2.787473 TTGTGTAGGGCATCCTCAAG 57.213 50.000 0.00 0.00 43.66 3.02
167 168 3.737559 ATTTGTGTAGGGCATCCTCAA 57.262 42.857 0.00 0.00 43.66 3.02
168 169 3.737559 AATTTGTGTAGGGCATCCTCA 57.262 42.857 0.00 0.00 43.66 3.86
169 170 6.998673 AGTATTAATTTGTGTAGGGCATCCTC 59.001 38.462 0.00 0.00 43.66 3.71
170 171 6.911308 AGTATTAATTTGTGTAGGGCATCCT 58.089 36.000 0.00 0.00 46.96 3.24
171 172 7.582667 AAGTATTAATTTGTGTAGGGCATCC 57.417 36.000 0.00 0.00 0.00 3.51
253 254 4.275936 GGTTTAATAGGAGCAATGCGTGAT 59.724 41.667 0.00 0.00 0.00 3.06
256 257 2.949644 GGGTTTAATAGGAGCAATGCGT 59.050 45.455 0.00 0.00 0.00 5.24
258 259 3.243068 CGTGGGTTTAATAGGAGCAATGC 60.243 47.826 0.00 0.00 0.00 3.56
263 264 6.094193 AGTATACGTGGGTTTAATAGGAGC 57.906 41.667 0.00 0.00 0.00 4.70
270 271 6.243811 CTTGCAAAGTATACGTGGGTTTAA 57.756 37.500 0.00 0.00 39.70 1.52
301 302 5.364446 TGGGATAGGTATTTGCTCGTTCTAA 59.636 40.000 0.00 0.00 0.00 2.10
308 309 3.746045 TCGTGGGATAGGTATTTGCTC 57.254 47.619 0.00 0.00 0.00 4.26
335 336 5.049828 ACACTTTTTGTAGGCATTTGCTTC 58.950 37.500 2.12 0.00 37.74 3.86
336 337 5.022282 ACACTTTTTGTAGGCATTTGCTT 57.978 34.783 2.12 0.00 37.74 3.91
354 355 9.681062 ATGCACCAAAATAGTAAGTATAACACT 57.319 29.630 0.00 0.00 40.05 3.55
355 356 9.931210 GATGCACCAAAATAGTAAGTATAACAC 57.069 33.333 0.00 0.00 0.00 3.32
356 357 9.116067 GGATGCACCAAAATAGTAAGTATAACA 57.884 33.333 0.00 0.00 38.79 2.41
357 358 9.116067 TGGATGCACCAAAATAGTAAGTATAAC 57.884 33.333 5.65 0.00 46.75 1.89
393 411 7.923414 ACACCTAAGTCAAAGAAATATGACC 57.077 36.000 2.52 0.00 45.55 4.02
409 427 4.184629 GGTGAGCAGACAATACACCTAAG 58.815 47.826 0.00 0.00 44.91 2.18
412 430 1.066858 CGGTGAGCAGACAATACACCT 60.067 52.381 0.00 0.00 45.78 4.00
426 444 2.455674 TGGACATTCTGAACGGTGAG 57.544 50.000 0.00 0.00 0.00 3.51
440 458 8.191446 TCGAATTTTGTCAATAAACTTTGGACA 58.809 29.630 0.00 0.00 0.00 4.02
457 475 9.184062 TCTGAAAGTGATGATTTTCGAATTTTG 57.816 29.630 0.00 0.00 36.36 2.44
461 479 9.565213 GATTTCTGAAAGTGATGATTTTCGAAT 57.435 29.630 8.95 0.00 36.36 3.34
462 480 8.567104 TGATTTCTGAAAGTGATGATTTTCGAA 58.433 29.630 8.95 0.00 36.36 3.71
475 493 6.604396 TGCATGTGGATATGATTTCTGAAAGT 59.396 34.615 8.95 0.64 33.76 2.66
480 498 8.547894 CATTTTTGCATGTGGATATGATTTCTG 58.452 33.333 0.00 0.00 0.00 3.02
496 514 7.603784 GGGAGTAGTTTTCATTCATTTTTGCAT 59.396 33.333 0.00 0.00 0.00 3.96
500 518 7.309194 CGGAGGGAGTAGTTTTCATTCATTTTT 60.309 37.037 0.00 0.00 0.00 1.94
512 530 2.322339 AGGAACGGAGGGAGTAGTTT 57.678 50.000 0.00 0.00 0.00 2.66
515 533 7.450944 ACTTATATTTAGGAACGGAGGGAGTAG 59.549 40.741 0.00 0.00 0.00 2.57
518 536 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
519 537 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
521 539 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
523 541 9.158233 CAACAAAGACTTATATTTAGGAACGGA 57.842 33.333 0.00 0.00 0.00 4.69
524 542 9.158233 TCAACAAAGACTTATATTTAGGAACGG 57.842 33.333 0.00 0.00 0.00 4.44
540 558 9.346725 GGTTCATAATGAAATCTCAACAAAGAC 57.653 33.333 0.00 0.00 38.22 3.01
541 559 9.076781 TGGTTCATAATGAAATCTCAACAAAGA 57.923 29.630 0.00 0.00 38.22 2.52
542 560 9.132521 GTGGTTCATAATGAAATCTCAACAAAG 57.867 33.333 0.00 0.00 38.22 2.77
543 561 8.637099 TGTGGTTCATAATGAAATCTCAACAAA 58.363 29.630 0.00 0.00 38.22 2.83
544 562 8.175925 TGTGGTTCATAATGAAATCTCAACAA 57.824 30.769 0.00 0.00 38.22 2.83
545 563 7.757941 TGTGGTTCATAATGAAATCTCAACA 57.242 32.000 0.00 0.00 38.22 3.33
546 564 9.722056 GTATGTGGTTCATAATGAAATCTCAAC 57.278 33.333 0.00 0.00 38.22 3.18
547 565 8.611757 CGTATGTGGTTCATAATGAAATCTCAA 58.388 33.333 0.00 0.00 38.22 3.02
548 566 7.226523 CCGTATGTGGTTCATAATGAAATCTCA 59.773 37.037 0.00 0.00 38.22 3.27
549 567 7.441157 TCCGTATGTGGTTCATAATGAAATCTC 59.559 37.037 0.00 0.00 38.22 2.75
550 568 7.279615 TCCGTATGTGGTTCATAATGAAATCT 58.720 34.615 0.00 0.00 38.22 2.40
551 569 7.490962 TCCGTATGTGGTTCATAATGAAATC 57.509 36.000 0.00 0.00 38.22 2.17
552 570 7.502226 ACATCCGTATGTGGTTCATAATGAAAT 59.498 33.333 0.00 0.00 44.79 2.17
553 571 6.826231 ACATCCGTATGTGGTTCATAATGAAA 59.174 34.615 0.00 0.00 44.79 2.69
554 572 6.353323 ACATCCGTATGTGGTTCATAATGAA 58.647 36.000 0.00 0.00 44.79 2.57
555 573 5.924356 ACATCCGTATGTGGTTCATAATGA 58.076 37.500 0.00 0.00 44.79 2.57
556 574 7.905604 ATACATCCGTATGTGGTTCATAATG 57.094 36.000 3.56 0.00 45.99 1.90
559 577 9.689501 TCTATATACATCCGTATGTGGTTCATA 57.310 33.333 3.56 0.00 45.99 2.15
560 578 8.589701 TCTATATACATCCGTATGTGGTTCAT 57.410 34.615 3.56 0.00 45.99 2.57
561 579 8.589701 ATCTATATACATCCGTATGTGGTTCA 57.410 34.615 3.56 0.00 45.99 3.18
562 580 9.947669 GTATCTATATACATCCGTATGTGGTTC 57.052 37.037 3.56 0.00 45.99 3.62
563 581 9.470399 TGTATCTATATACATCCGTATGTGGTT 57.530 33.333 3.56 0.00 45.99 3.67
594 612 9.520204 CGGAGCAAAATAAATGAATTCATACTT 57.480 29.630 21.00 14.66 35.10 2.24
595 613 8.686334 ACGGAGCAAAATAAATGAATTCATACT 58.314 29.630 21.00 13.54 35.10 2.12
596 614 8.856490 ACGGAGCAAAATAAATGAATTCATAC 57.144 30.769 21.00 4.44 35.10 2.39
604 622 9.431887 GGACTATATACGGAGCAAAATAAATGA 57.568 33.333 0.00 0.00 0.00 2.57
605 623 9.214957 TGGACTATATACGGAGCAAAATAAATG 57.785 33.333 0.00 0.00 0.00 2.32
606 624 9.959721 ATGGACTATATACGGAGCAAAATAAAT 57.040 29.630 0.00 0.00 0.00 1.40
607 625 9.431887 GATGGACTATATACGGAGCAAAATAAA 57.568 33.333 0.00 0.00 0.00 1.40
608 626 8.812972 AGATGGACTATATACGGAGCAAAATAA 58.187 33.333 0.00 0.00 0.00 1.40
609 627 8.362464 AGATGGACTATATACGGAGCAAAATA 57.638 34.615 0.00 0.00 0.00 1.40
610 628 7.246171 AGATGGACTATATACGGAGCAAAAT 57.754 36.000 0.00 0.00 0.00 1.82
611 629 6.665992 AGATGGACTATATACGGAGCAAAA 57.334 37.500 0.00 0.00 0.00 2.44
612 630 6.946583 ACTAGATGGACTATATACGGAGCAAA 59.053 38.462 0.00 0.00 0.00 3.68
613 631 6.374613 CACTAGATGGACTATATACGGAGCAA 59.625 42.308 0.00 0.00 0.00 3.91
614 632 5.880887 CACTAGATGGACTATATACGGAGCA 59.119 44.000 0.00 0.00 0.00 4.26
615 633 6.114089 TCACTAGATGGACTATATACGGAGC 58.886 44.000 0.00 0.00 0.00 4.70
616 634 8.563123 TTTCACTAGATGGACTATATACGGAG 57.437 38.462 0.00 0.00 0.00 4.63
617 635 9.175312 GATTTCACTAGATGGACTATATACGGA 57.825 37.037 0.00 0.00 0.00 4.69
618 636 9.179909 AGATTTCACTAGATGGACTATATACGG 57.820 37.037 0.00 0.00 0.00 4.02
644 662 9.733219 CCGTTTTTAAATGTAAGTCCTTGTAAA 57.267 29.630 0.00 0.00 0.00 2.01
645 663 9.118300 TCCGTTTTTAAATGTAAGTCCTTGTAA 57.882 29.630 0.00 0.00 0.00 2.41
646 664 8.674263 TCCGTTTTTAAATGTAAGTCCTTGTA 57.326 30.769 0.00 0.00 0.00 2.41
647 665 7.255346 CCTCCGTTTTTAAATGTAAGTCCTTGT 60.255 37.037 0.00 0.00 0.00 3.16
648 666 7.081976 CCTCCGTTTTTAAATGTAAGTCCTTG 58.918 38.462 0.00 0.00 0.00 3.61
649 667 6.208007 CCCTCCGTTTTTAAATGTAAGTCCTT 59.792 38.462 0.00 0.00 0.00 3.36
650 668 5.708697 CCCTCCGTTTTTAAATGTAAGTCCT 59.291 40.000 0.00 0.00 0.00 3.85
651 669 5.706833 TCCCTCCGTTTTTAAATGTAAGTCC 59.293 40.000 0.00 0.00 0.00 3.85
652 670 6.429078 ACTCCCTCCGTTTTTAAATGTAAGTC 59.571 38.462 0.00 0.00 0.00 3.01
653 671 6.301486 ACTCCCTCCGTTTTTAAATGTAAGT 58.699 36.000 0.00 0.00 0.00 2.24
654 672 6.812879 ACTCCCTCCGTTTTTAAATGTAAG 57.187 37.500 0.00 0.00 0.00 2.34
655 673 8.866970 AATACTCCCTCCGTTTTTAAATGTAA 57.133 30.769 0.00 0.00 0.00 2.41
656 674 8.866970 AAATACTCCCTCCGTTTTTAAATGTA 57.133 30.769 0.00 0.00 0.00 2.29
657 675 7.770366 AAATACTCCCTCCGTTTTTAAATGT 57.230 32.000 0.00 0.00 0.00 2.71
658 676 8.301002 TCAAAATACTCCCTCCGTTTTTAAATG 58.699 33.333 0.00 0.00 0.00 2.32
659 677 8.301720 GTCAAAATACTCCCTCCGTTTTTAAAT 58.698 33.333 0.00 0.00 0.00 1.40
660 678 7.284944 TGTCAAAATACTCCCTCCGTTTTTAAA 59.715 33.333 0.00 0.00 0.00 1.52
661 679 6.771749 TGTCAAAATACTCCCTCCGTTTTTAA 59.228 34.615 0.00 0.00 0.00 1.52
662 680 6.297582 TGTCAAAATACTCCCTCCGTTTTTA 58.702 36.000 0.00 0.00 0.00 1.52
663 681 5.134661 TGTCAAAATACTCCCTCCGTTTTT 58.865 37.500 0.00 0.00 0.00 1.94
664 682 4.721132 TGTCAAAATACTCCCTCCGTTTT 58.279 39.130 0.00 0.00 0.00 2.43
665 683 4.202430 ACTGTCAAAATACTCCCTCCGTTT 60.202 41.667 0.00 0.00 0.00 3.60
666 684 3.326880 ACTGTCAAAATACTCCCTCCGTT 59.673 43.478 0.00 0.00 0.00 4.44
667 685 2.904434 ACTGTCAAAATACTCCCTCCGT 59.096 45.455 0.00 0.00 0.00 4.69
668 686 3.262420 CACTGTCAAAATACTCCCTCCG 58.738 50.000 0.00 0.00 0.00 4.63
669 687 3.010420 GCACTGTCAAAATACTCCCTCC 58.990 50.000 0.00 0.00 0.00 4.30
670 688 3.686726 CAGCACTGTCAAAATACTCCCTC 59.313 47.826 0.00 0.00 0.00 4.30
671 689 3.327757 TCAGCACTGTCAAAATACTCCCT 59.672 43.478 0.00 0.00 0.00 4.20
672 690 3.674997 TCAGCACTGTCAAAATACTCCC 58.325 45.455 0.00 0.00 0.00 4.30
673 691 5.412594 TCATTCAGCACTGTCAAAATACTCC 59.587 40.000 0.00 0.00 0.00 3.85
674 692 6.486253 TCATTCAGCACTGTCAAAATACTC 57.514 37.500 0.00 0.00 0.00 2.59
675 693 6.882610 TTCATTCAGCACTGTCAAAATACT 57.117 33.333 0.00 0.00 0.00 2.12
676 694 8.524870 AAATTCATTCAGCACTGTCAAAATAC 57.475 30.769 0.00 0.00 0.00 1.89
690 708 7.012327 TGGCCTCGTCTATTAAAATTCATTCAG 59.988 37.037 3.32 0.00 0.00 3.02
705 723 1.757118 CCTCAAGATTGGCCTCGTCTA 59.243 52.381 3.32 0.00 0.00 2.59
754 798 0.172578 TGATCTTCTACGGTGCGGTG 59.827 55.000 0.00 0.00 0.00 4.94
755 799 1.067212 GATGATCTTCTACGGTGCGGT 59.933 52.381 1.42 0.00 0.00 5.68
756 800 1.067060 TGATGATCTTCTACGGTGCGG 59.933 52.381 9.75 0.00 0.00 5.69
757 801 2.120232 GTGATGATCTTCTACGGTGCG 58.880 52.381 9.75 0.00 0.00 5.34
758 802 3.119291 CTGTGATGATCTTCTACGGTGC 58.881 50.000 9.75 0.00 0.00 5.01
764 808 5.068855 CCTTGAGAGCTGTGATGATCTTCTA 59.931 44.000 9.75 0.00 32.38 2.10
831 875 0.252558 ACCATGGTTAGGTCTCGGGT 60.253 55.000 13.00 0.00 32.90 5.28
832 876 2.604118 ACCATGGTTAGGTCTCGGG 58.396 57.895 13.00 0.00 32.90 5.14
890 934 0.535553 TTGGCGTCTTGGGTTGGTAC 60.536 55.000 0.00 0.00 0.00 3.34
891 935 0.183014 TTTGGCGTCTTGGGTTGGTA 59.817 50.000 0.00 0.00 0.00 3.25
892 936 0.684805 TTTTGGCGTCTTGGGTTGGT 60.685 50.000 0.00 0.00 0.00 3.67
893 937 0.461961 TTTTTGGCGTCTTGGGTTGG 59.538 50.000 0.00 0.00 0.00 3.77
895 939 0.462375 GGTTTTTGGCGTCTTGGGTT 59.538 50.000 0.00 0.00 0.00 4.11
896 940 1.396607 GGGTTTTTGGCGTCTTGGGT 61.397 55.000 0.00 0.00 0.00 4.51
897 941 1.365999 GGGTTTTTGGCGTCTTGGG 59.634 57.895 0.00 0.00 0.00 4.12
898 942 0.249280 GTGGGTTTTTGGCGTCTTGG 60.249 55.000 0.00 0.00 0.00 3.61
899 943 0.593773 CGTGGGTTTTTGGCGTCTTG 60.594 55.000 0.00 0.00 0.00 3.02
900 944 1.731093 CGTGGGTTTTTGGCGTCTT 59.269 52.632 0.00 0.00 0.00 3.01
901 945 2.841160 GCGTGGGTTTTTGGCGTCT 61.841 57.895 0.00 0.00 0.00 4.18
902 946 2.354188 GCGTGGGTTTTTGGCGTC 60.354 61.111 0.00 0.00 0.00 5.19
969 1018 2.773053 TGGTGGTGGGGAAACGGA 60.773 61.111 0.00 0.00 0.00 4.69
1069 1125 2.699954 GAGGATGTCCGTGATGTTGTT 58.300 47.619 0.00 0.00 42.08 2.83
1121 1177 0.827368 CTTGGTCTGGGAGAGGTAGC 59.173 60.000 0.00 0.00 0.00 3.58
1216 1272 2.683933 GGCGAGGGAGAGGTTGGA 60.684 66.667 0.00 0.00 0.00 3.53
1459 1515 1.207329 GTTGTACGGCTCCTCCTTGAT 59.793 52.381 0.00 0.00 0.00 2.57
1878 1934 1.819632 GTCCATGCCGGTGTCCATC 60.820 63.158 1.90 0.00 35.57 3.51
2080 2136 2.867975 GTTTCGGTTTCTTCTTGTCGGA 59.132 45.455 0.00 0.00 0.00 4.55
2090 2146 1.329599 GCGACTTGTGTTTCGGTTTCT 59.670 47.619 0.00 0.00 35.73 2.52
2136 2192 0.729478 CCGTATCAGGCGTATCAGCG 60.729 60.000 0.00 0.00 38.18 5.18
2275 2331 1.942776 TGGGCAGATCAGAAGAGTGA 58.057 50.000 0.00 0.00 0.00 3.41
2281 2337 2.783135 GAACACTTGGGCAGATCAGAA 58.217 47.619 0.00 0.00 0.00 3.02
2319 2376 3.294493 GCGCCCACAGGAAAGCAA 61.294 61.111 0.00 0.00 33.47 3.91
2322 2379 2.040544 ATTCGCGCCCACAGGAAAG 61.041 57.895 0.00 0.00 33.47 2.62
2329 2386 1.439353 ATCACATCATTCGCGCCCAC 61.439 55.000 0.00 0.00 0.00 4.61
2330 2387 1.153188 ATCACATCATTCGCGCCCA 60.153 52.632 0.00 0.00 0.00 5.36
2331 2388 1.280746 CATCACATCATTCGCGCCC 59.719 57.895 0.00 0.00 0.00 6.13
2332 2389 1.369689 GCATCACATCATTCGCGCC 60.370 57.895 0.00 0.00 0.00 6.53
2333 2390 0.927083 GTGCATCACATCATTCGCGC 60.927 55.000 0.00 0.00 34.08 6.86
2334 2391 0.654160 AGTGCATCACATCATTCGCG 59.346 50.000 0.00 0.00 36.74 5.87
2335 2392 1.003116 GGAGTGCATCACATCATTCGC 60.003 52.381 0.00 0.00 36.74 4.70
2336 2393 1.259770 CGGAGTGCATCACATCATTCG 59.740 52.381 0.00 0.00 36.74 3.34
2337 2394 2.283298 ACGGAGTGCATCACATCATTC 58.717 47.619 0.00 0.00 42.51 2.67
2338 2395 2.408271 ACGGAGTGCATCACATCATT 57.592 45.000 0.00 0.00 42.51 2.57
2357 2414 0.934496 CACGAACTCGCAACCAAGAA 59.066 50.000 0.00 0.00 44.43 2.52
2398 2455 4.887655 CCAACCAGGAAGAAGTAACAACTT 59.112 41.667 0.00 0.00 41.22 2.66
2401 2458 4.781775 TCCAACCAGGAAGAAGTAACAA 57.218 40.909 0.00 0.00 45.65 2.83
2462 2527 8.341173 CAAACTTAATAGATTTCTAGGCAGCTG 58.659 37.037 10.11 10.11 0.00 4.24
2482 2551 5.376854 ACGAGCATAGCAAAATCAAACTT 57.623 34.783 0.00 0.00 0.00 2.66
2589 2662 5.876612 AGATCAAATCTCTGTTCACAAGC 57.123 39.130 0.00 0.00 33.42 4.01
2615 2691 5.890334 ACGAACCAATGCATCGATTAATTT 58.110 33.333 13.21 0.00 39.73 1.82
2623 2699 1.273688 TACGACGAACCAATGCATCG 58.726 50.000 0.00 1.63 42.05 3.84
2639 2715 5.625721 TGTGCAAAAACGGTGATATTTTACG 59.374 36.000 0.00 0.00 0.00 3.18
2643 2719 8.594881 TTTAATGTGCAAAAACGGTGATATTT 57.405 26.923 0.00 0.00 0.00 1.40
2687 2776 4.214119 ACATATCAATCGGTAGTGCAATGC 59.786 41.667 0.00 0.00 0.00 3.56
2696 2785 3.828875 TGGCACACATATCAATCGGTA 57.171 42.857 0.00 0.00 0.00 4.02
2729 2818 1.679898 GCCAACAGCACTACTCCCT 59.320 57.895 0.00 0.00 42.97 4.20
2731 2820 0.902531 TAGGCCAACAGCACTACTCC 59.097 55.000 5.01 0.00 46.50 3.85
2733 2822 1.645710 AGTAGGCCAACAGCACTACT 58.354 50.000 5.01 0.00 44.24 2.57
2734 2823 1.676014 CCAGTAGGCCAACAGCACTAC 60.676 57.143 5.01 0.00 46.50 2.73
2735 2824 0.613260 CCAGTAGGCCAACAGCACTA 59.387 55.000 5.01 0.00 46.50 2.74
2736 2825 1.127567 TCCAGTAGGCCAACAGCACT 61.128 55.000 5.01 0.00 46.50 4.40
2737 2826 0.035056 ATCCAGTAGGCCAACAGCAC 60.035 55.000 5.01 0.00 46.50 4.40
2738 2827 0.035152 CATCCAGTAGGCCAACAGCA 60.035 55.000 5.01 0.00 46.50 4.41
2739 2828 1.379642 GCATCCAGTAGGCCAACAGC 61.380 60.000 5.01 0.00 42.60 4.40
2743 2832 0.177141 GTACGCATCCAGTAGGCCAA 59.823 55.000 5.01 0.00 33.74 4.52
2760 2849 4.464008 AGGGGTACTTTCATCGATACGTA 58.536 43.478 0.00 0.00 0.00 3.57
2763 2852 5.779529 TGTAGGGGTACTTTCATCGATAC 57.220 43.478 0.00 0.00 0.00 2.24
2768 2857 3.195661 CGCTTGTAGGGGTACTTTCATC 58.804 50.000 0.00 0.00 0.00 2.92
2769 2858 2.570302 ACGCTTGTAGGGGTACTTTCAT 59.430 45.455 0.00 0.00 31.71 2.57
2779 2868 0.176680 ATGCTCTCACGCTTGTAGGG 59.823 55.000 0.00 0.00 0.00 3.53
2780 2869 1.135915 AGATGCTCTCACGCTTGTAGG 59.864 52.381 0.00 0.00 0.00 3.18
2781 2870 2.458951 GAGATGCTCTCACGCTTGTAG 58.541 52.381 7.93 0.00 42.90 2.74
2782 2871 1.135139 GGAGATGCTCTCACGCTTGTA 59.865 52.381 13.06 0.00 45.12 2.41
2783 2872 0.108424 GGAGATGCTCTCACGCTTGT 60.108 55.000 13.06 0.00 45.12 3.16
2784 2873 0.108472 TGGAGATGCTCTCACGCTTG 60.108 55.000 13.06 0.00 45.12 4.01
2785 2874 0.610174 TTGGAGATGCTCTCACGCTT 59.390 50.000 13.06 0.00 45.12 4.68
2786 2875 0.108424 GTTGGAGATGCTCTCACGCT 60.108 55.000 13.06 0.00 45.12 5.07
2787 2876 0.390340 TGTTGGAGATGCTCTCACGC 60.390 55.000 13.06 5.09 45.12 5.34
2788 2877 1.638133 CTGTTGGAGATGCTCTCACG 58.362 55.000 13.06 0.00 45.12 4.35
2789 2878 1.367659 GCTGTTGGAGATGCTCTCAC 58.632 55.000 13.06 6.26 45.12 3.51
2790 2879 0.251354 GGCTGTTGGAGATGCTCTCA 59.749 55.000 13.06 0.00 45.12 3.27
2791 2880 0.809241 CGGCTGTTGGAGATGCTCTC 60.809 60.000 5.01 5.01 42.66 3.20
3015 3106 3.687102 CGGCGGTGGTGTAGGACA 61.687 66.667 0.00 0.00 0.00 4.02
3148 3768 2.987547 TTCGTCCTCTTCGCCCGT 60.988 61.111 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.