Multiple sequence alignment - TraesCS2B01G416200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G416200 chr2B 100.000 6419 0 0 1 6419 594853217 594846799 0.000000e+00 11854
1 TraesCS2B01G416200 chr2B 94.531 128 7 0 4121 4248 674786714 674786841 1.410000e-46 198
2 TraesCS2B01G416200 chr2B 92.481 133 6 2 4511 4642 576683056 576683185 3.060000e-43 187
3 TraesCS2B01G416200 chr2B 94.845 97 3 2 4762 4857 254692309 254692214 4.010000e-32 150
4 TraesCS2B01G416200 chr2D 96.063 2489 76 9 1643 4127 506796949 506794479 0.000000e+00 4034
5 TraesCS2B01G416200 chr2D 94.602 1556 50 14 4890 6419 506794112 506792565 0.000000e+00 2377
6 TraesCS2B01G416200 chr2D 93.697 825 30 7 816 1634 506797856 506797048 0.000000e+00 1216
7 TraesCS2B01G416200 chr2D 91.922 817 48 14 8 812 587276129 587275319 0.000000e+00 1127
8 TraesCS2B01G416200 chr2D 96.957 230 6 1 4293 4522 506794505 506794277 1.010000e-102 385
9 TraesCS2B01G416200 chr2D 97.101 69 2 0 4637 4705 506794280 506794212 4.070000e-22 117
10 TraesCS2B01G416200 chr2D 96.610 59 2 0 4716 4774 506794229 506794171 1.470000e-16 99
11 TraesCS2B01G416200 chr2A 92.650 1551 70 11 4890 6419 651611353 651609826 0.000000e+00 2193
12 TraesCS2B01G416200 chr2A 96.560 1192 41 0 2936 4127 651612910 651611719 0.000000e+00 1975
13 TraesCS2B01G416200 chr2A 94.154 1300 53 10 1642 2937 651614294 651613014 0.000000e+00 1958
14 TraesCS2B01G416200 chr2A 93.917 822 35 7 816 1634 651615221 651614412 0.000000e+00 1227
15 TraesCS2B01G416200 chr2A 98.206 223 4 0 4300 4522 651611739 651611517 2.170000e-104 390
16 TraesCS2B01G416200 chr2A 95.683 139 4 2 4637 4774 651611520 651611383 8.380000e-54 222
17 TraesCS2B01G416200 chr2A 93.846 130 8 0 4120 4249 560773408 560773537 5.080000e-46 196
18 TraesCS2B01G416200 chr2A 93.182 132 6 1 4517 4648 242680576 242680448 2.360000e-44 191
19 TraesCS2B01G416200 chr2A 97.647 85 2 0 4771 4855 360776472 360776556 5.190000e-31 147
20 TraesCS2B01G416200 chr2A 90.244 82 6 2 4248 4329 333765913 333765834 8.800000e-19 106
21 TraesCS2B01G416200 chr5D 93.742 815 39 11 8 814 433995208 433994398 0.000000e+00 1212
22 TraesCS2B01G416200 chr5D 93.233 133 4 2 4509 4639 30459060 30459189 2.360000e-44 191
23 TraesCS2B01G416200 chr5D 92.857 98 4 3 4767 4862 453867863 453867959 8.680000e-29 139
24 TraesCS2B01G416200 chr7D 93.253 830 33 14 8 817 625618705 625619531 0.000000e+00 1201
25 TraesCS2B01G416200 chr7D 91.331 819 49 16 18 817 182033786 182034601 0.000000e+00 1099
26 TraesCS2B01G416200 chr7D 93.893 131 5 1 4511 4641 321955176 321955049 1.830000e-45 195
27 TraesCS2B01G416200 chr7D 93.939 99 4 2 4760 4857 310968206 310968303 1.440000e-31 148
28 TraesCS2B01G416200 chr1B 92.317 820 41 9 8 809 462801588 462800773 0.000000e+00 1146
29 TraesCS2B01G416200 chr1B 92.063 189 9 2 4129 4311 26635735 26635547 1.780000e-65 261
30 TraesCS2B01G416200 chr1B 93.056 72 4 1 4248 4319 502938432 502938362 3.170000e-18 104
31 TraesCS2B01G416200 chr5B 92.222 810 49 10 13 815 434912847 434912045 0.000000e+00 1134
32 TraesCS2B01G416200 chr5B 95.238 126 6 0 4123 4248 138783248 138783123 3.920000e-47 200
33 TraesCS2B01G416200 chr5B 90.972 144 7 4 4497 4638 55460276 55460137 8.500000e-44 189
34 TraesCS2B01G416200 chr4A 91.596 821 47 15 9 809 140850237 140849419 0.000000e+00 1114
35 TraesCS2B01G416200 chr4A 90.909 77 5 1 4248 4322 737767916 737767840 1.140000e-17 102
36 TraesCS2B01G416200 chr1A 91.119 822 50 15 8 809 566579916 566580734 0.000000e+00 1092
37 TraesCS2B01G416200 chr3A 91.572 795 52 13 31 816 517937942 517937154 0.000000e+00 1083
38 TraesCS2B01G416200 chr3A 91.262 103 5 4 4765 4865 600920358 600920458 3.120000e-28 137
39 TraesCS2B01G416200 chr7B 88.757 169 11 1 4136 4304 552123324 552123164 3.920000e-47 200
40 TraesCS2B01G416200 chr7B 93.333 135 7 2 4116 4248 115544686 115544820 1.410000e-46 198
41 TraesCS2B01G416200 chr7B 93.750 96 4 2 4761 4855 100745830 100745924 6.710000e-30 143
42 TraesCS2B01G416200 chr7B 94.286 70 4 0 4248 4317 304123052 304122983 2.450000e-19 108
43 TraesCS2B01G416200 chr5A 93.382 136 8 1 4114 4248 516973242 516973377 3.920000e-47 200
44 TraesCS2B01G416200 chr5A 93.243 74 4 1 4248 4320 387346217 387346290 2.450000e-19 108
45 TraesCS2B01G416200 chr3B 96.694 121 1 1 4518 4638 475816888 475817005 1.410000e-46 198
46 TraesCS2B01G416200 chr3B 93.798 129 4 3 4513 4640 3262062 3262187 2.360000e-44 191
47 TraesCS2B01G416200 chr4D 93.284 134 8 1 4115 4248 220343372 220343240 5.080000e-46 196
48 TraesCS2B01G416200 chr4B 93.233 133 8 1 4117 4248 293231875 293231743 1.830000e-45 195
49 TraesCS2B01G416200 chr4B 94.444 126 4 1 4516 4641 23382140 23382018 2.360000e-44 191
50 TraesCS2B01G416200 chr4B 93.750 96 2 4 4771 4863 30370062 30369968 2.410000e-29 141
51 TraesCS2B01G416200 chr4B 94.286 70 3 1 4248 4316 148994206 148994137 8.800000e-19 106
52 TraesCS2B01G416200 chr6D 91.729 133 8 1 4515 4647 136474718 136474589 1.420000e-41 182
53 TraesCS2B01G416200 chr1D 94.737 95 4 1 4770 4863 9228742 9228648 5.190000e-31 147
54 TraesCS2B01G416200 chr6A 93.814 97 3 3 4761 4854 548412800 548412704 6.710000e-30 143
55 TraesCS2B01G416200 chr7A 90.123 81 6 2 4248 4326 398458939 398458859 3.170000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G416200 chr2B 594846799 594853217 6418 True 11854.000000 11854 100.000000 1 6419 1 chr2B.!!$R2 6418
1 TraesCS2B01G416200 chr2D 506792565 506797856 5291 True 1371.333333 4034 95.838333 816 6419 6 chr2D.!!$R2 5603
2 TraesCS2B01G416200 chr2D 587275319 587276129 810 True 1127.000000 1127 91.922000 8 812 1 chr2D.!!$R1 804
3 TraesCS2B01G416200 chr2A 651609826 651615221 5395 True 1327.500000 2193 95.195000 816 6419 6 chr2A.!!$R3 5603
4 TraesCS2B01G416200 chr5D 433994398 433995208 810 True 1212.000000 1212 93.742000 8 814 1 chr5D.!!$R1 806
5 TraesCS2B01G416200 chr7D 625618705 625619531 826 False 1201.000000 1201 93.253000 8 817 1 chr7D.!!$F3 809
6 TraesCS2B01G416200 chr7D 182033786 182034601 815 False 1099.000000 1099 91.331000 18 817 1 chr7D.!!$F1 799
7 TraesCS2B01G416200 chr1B 462800773 462801588 815 True 1146.000000 1146 92.317000 8 809 1 chr1B.!!$R2 801
8 TraesCS2B01G416200 chr5B 434912045 434912847 802 True 1134.000000 1134 92.222000 13 815 1 chr5B.!!$R3 802
9 TraesCS2B01G416200 chr4A 140849419 140850237 818 True 1114.000000 1114 91.596000 9 809 1 chr4A.!!$R1 800
10 TraesCS2B01G416200 chr1A 566579916 566580734 818 False 1092.000000 1092 91.119000 8 809 1 chr1A.!!$F1 801
11 TraesCS2B01G416200 chr3A 517937154 517937942 788 True 1083.000000 1083 91.572000 31 816 1 chr3A.!!$R1 785

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
694 768 0.541863 CCTCTTCGGCCAATGGTAGT 59.458 55.000 2.24 0.00 0.00 2.73 F
1752 1945 1.203287 GTTGCCCTTCCTCTTGCATTC 59.797 52.381 0.00 0.00 33.08 2.67 F
2361 2558 0.464036 GTACCTGCATCGGATCACCA 59.536 55.000 0.00 0.00 35.59 4.17 F
4132 4437 0.100503 CGTTGAATGGGGAATTCCGC 59.899 55.000 29.66 29.66 43.61 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2344 2541 0.107456 GATGGTGATCCGATGCAGGT 59.893 55.0 0.00 0.00 36.3 4.00 R
3540 3845 0.320771 CCGATTGAGCCTTATCCCCG 60.321 60.0 0.00 0.00 0.0 5.73 R
4200 4505 0.109735 GGCTGAGCTTTTACGTTGGC 60.110 55.0 3.72 0.00 0.0 4.52 R
5583 5943 0.108804 CACGTGTAGGTACCCAGCAG 60.109 60.0 8.74 0.17 0.0 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 77 1.204786 TGGCGGGAGAAAATGGAGGA 61.205 55.000 0.00 0.00 0.00 3.71
77 128 7.762159 GGCAAATAAATGACGGGAAAGAAAATA 59.238 33.333 0.00 0.00 0.00 1.40
78 129 9.145865 GCAAATAAATGACGGGAAAGAAAATAA 57.854 29.630 0.00 0.00 0.00 1.40
157 221 4.407365 GGAGAAAATGGAGGGAAAGAACA 58.593 43.478 0.00 0.00 0.00 3.18
187 251 9.996554 GGAAAGAAAATGGAGGATAAAAGAAAA 57.003 29.630 0.00 0.00 0.00 2.29
694 768 0.541863 CCTCTTCGGCCAATGGTAGT 59.458 55.000 2.24 0.00 0.00 2.73
834 911 6.020041 GTCCATATAAGAGAACCGACGTTTTC 60.020 42.308 0.00 0.00 34.15 2.29
838 915 6.796705 ATAAGAGAACCGACGTTTTCATTT 57.203 33.333 8.63 5.48 35.94 2.32
839 916 5.494632 AAGAGAACCGACGTTTTCATTTT 57.505 34.783 8.63 0.00 35.94 1.82
840 917 5.091910 AGAGAACCGACGTTTTCATTTTC 57.908 39.130 8.63 0.00 35.94 2.29
841 918 4.573201 AGAGAACCGACGTTTTCATTTTCA 59.427 37.500 8.63 0.00 35.94 2.69
842 919 5.238650 AGAGAACCGACGTTTTCATTTTCAT 59.761 36.000 8.63 0.00 35.94 2.57
843 920 5.827666 AGAACCGACGTTTTCATTTTCATT 58.172 33.333 8.63 0.00 30.30 2.57
844 921 6.961576 AGAACCGACGTTTTCATTTTCATTA 58.038 32.000 8.63 0.00 30.30 1.90
924 1001 2.107950 TCGTACAAGCCTTTGGATGG 57.892 50.000 0.00 0.00 38.66 3.51
986 1063 4.025401 GGCACGGGCACGAAACAG 62.025 66.667 19.19 0.00 44.60 3.16
1352 1434 6.480320 ACATCGCATCTTCCTTTGTACTAATC 59.520 38.462 0.00 0.00 0.00 1.75
1392 1474 5.125417 TGTGGGAAGAAACAACTGAAGAAAG 59.875 40.000 0.00 0.00 0.00 2.62
1422 1504 6.743575 AATGGTGTTTAGATGCTAGTGTTC 57.256 37.500 0.00 0.00 0.00 3.18
1455 1538 5.479375 ACACATTCTTCAGCAGATGGAAATT 59.521 36.000 0.00 0.00 0.00 1.82
1458 1541 3.273434 TCTTCAGCAGATGGAAATTCGG 58.727 45.455 0.00 0.00 0.00 4.30
1492 1575 2.039418 TGTGCTGTTCAGTGGAGTACT 58.961 47.619 0.00 0.00 41.36 2.73
1499 1582 5.201713 TGTTCAGTGGAGTACTTGAGAAG 57.798 43.478 0.00 0.00 37.60 2.85
1513 1596 4.081752 ACTTGAGAAGGACAGCAGATAGTG 60.082 45.833 0.00 0.00 0.00 2.74
1540 1623 7.665690 TCAATTGAGCCTCTAGATTCATCTAC 58.334 38.462 3.38 0.00 38.32 2.59
1613 1696 3.117888 TGGAGCCCCAAATTCTAGATGTC 60.118 47.826 0.00 0.00 40.09 3.06
1634 1717 7.311092 TGTCAGAACTTGAAACCCTATTAGA 57.689 36.000 0.00 0.00 37.61 2.10
1635 1718 7.741785 TGTCAGAACTTGAAACCCTATTAGAA 58.258 34.615 0.00 0.00 37.61 2.10
1636 1719 7.878127 TGTCAGAACTTGAAACCCTATTAGAAG 59.122 37.037 0.00 0.00 37.61 2.85
1637 1720 7.878644 GTCAGAACTTGAAACCCTATTAGAAGT 59.121 37.037 0.00 0.00 37.61 3.01
1638 1721 8.095169 TCAGAACTTGAAACCCTATTAGAAGTC 58.905 37.037 0.00 0.00 31.34 3.01
1639 1722 7.878127 CAGAACTTGAAACCCTATTAGAAGTCA 59.122 37.037 0.00 0.00 0.00 3.41
1640 1723 8.437575 AGAACTTGAAACCCTATTAGAAGTCAA 58.562 33.333 0.00 0.00 0.00 3.18
1752 1945 1.203287 GTTGCCCTTCCTCTTGCATTC 59.797 52.381 0.00 0.00 33.08 2.67
1760 1953 2.554142 TCCTCTTGCATTCGTGCATAG 58.446 47.619 3.73 5.34 44.94 2.23
1801 1994 2.348666 ACTCGTATCAACAGCGAAATGC 59.651 45.455 0.00 0.00 46.98 3.56
1890 2087 9.545611 CCACTTTGCATTCTTTTATTTATTTGC 57.454 29.630 0.00 0.00 0.00 3.68
1915 2112 7.499895 GCTATCTACTTTACTACTCTGGTGACT 59.500 40.741 0.00 0.00 0.00 3.41
2030 2227 6.437928 TGCAAAACTTTCTACTTGCTACATG 58.562 36.000 7.12 0.00 43.59 3.21
2039 2236 5.793817 TCTACTTGCTACATGCTTGAAAGA 58.206 37.500 6.60 0.00 43.37 2.52
2061 2258 6.741109 AGAAAAACGGTTATTGTTAAGTGGG 58.259 36.000 0.00 0.00 0.00 4.61
2092 2289 6.548993 GGATTTAAAAGCATGAATCTCCTCCT 59.451 38.462 0.00 0.00 0.00 3.69
2155 2352 6.816640 TGTAGTCATTCTCAAAAACCTATCCG 59.183 38.462 0.00 0.00 0.00 4.18
2344 2541 3.437213 TGAGGACGAAAGGGAAGATGTA 58.563 45.455 0.00 0.00 0.00 2.29
2361 2558 0.464036 GTACCTGCATCGGATCACCA 59.536 55.000 0.00 0.00 35.59 4.17
2362 2559 1.070758 GTACCTGCATCGGATCACCAT 59.929 52.381 0.00 0.00 35.59 3.55
2447 2644 2.955660 ACGGTTTCTTTTTGGAGATGCA 59.044 40.909 0.00 0.00 0.00 3.96
2512 2709 3.556999 TGGAAAAATGGAAAGTCACGGA 58.443 40.909 0.00 0.00 0.00 4.69
2694 2891 6.828785 ACTTTTCACAGGTAACAAGATTGTCT 59.171 34.615 0.00 0.00 41.31 3.41
2700 2897 3.000727 GGTAACAAGATTGTCTGTCCCG 58.999 50.000 0.00 0.00 41.31 5.14
2747 2944 8.021396 GCCATATTTTCTTTATCGACATTACCC 58.979 37.037 0.00 0.00 0.00 3.69
2771 2968 7.202093 CCCTGATGAATTTCTATGTACACCCTA 60.202 40.741 0.00 0.00 0.00 3.53
2779 2976 9.561069 AATTTCTATGTACACCCTAACATGATC 57.439 33.333 0.00 0.00 36.96 2.92
2813 3010 7.335673 TCAACACTCTCAGTTTTATGACAACAA 59.664 33.333 0.00 0.00 0.00 2.83
2814 3011 7.624360 ACACTCTCAGTTTTATGACAACAAA 57.376 32.000 0.00 0.00 0.00 2.83
2828 3025 6.164408 TGACAACAAACAGTAATATGCTCG 57.836 37.500 0.00 0.00 0.00 5.03
2829 3026 4.969816 ACAACAAACAGTAATATGCTCGC 58.030 39.130 0.00 0.00 0.00 5.03
2830 3027 4.454161 ACAACAAACAGTAATATGCTCGCA 59.546 37.500 0.00 0.00 0.00 5.10
2831 3028 4.864916 ACAAACAGTAATATGCTCGCAG 57.135 40.909 0.00 0.00 0.00 5.18
2832 3029 3.063997 ACAAACAGTAATATGCTCGCAGC 59.936 43.478 0.00 1.70 42.82 5.25
2919 3116 4.567159 GGAACAGTAAGAAATGCTCCTACG 59.433 45.833 0.00 0.00 30.53 3.51
2984 3289 9.855361 CTAGATAATCTAGCAACGAACATTTTG 57.145 33.333 0.00 0.00 39.88 2.44
3001 3306 6.158598 ACATTTTGCTGTCGCTTTTGATAAT 58.841 32.000 0.00 0.00 36.97 1.28
3037 3342 8.909708 TCACCTTGCAGAATAAATTTTATTCG 57.090 30.769 25.31 21.75 38.56 3.34
3061 3366 3.447586 TCAGTCAGCATAGTTGTACCTCC 59.552 47.826 0.00 0.00 0.00 4.30
3081 3386 4.643463 TCCGTGACTGGCAAAATTAGTTA 58.357 39.130 0.00 0.00 0.00 2.24
3123 3428 7.891561 AGCAAAATTAGTTGGCAATACTGTTA 58.108 30.769 1.92 0.00 0.00 2.41
3130 3435 5.238583 AGTTGGCAATACTGTTACTGACTC 58.761 41.667 1.92 0.00 0.00 3.36
3134 3439 6.941857 TGGCAATACTGTTACTGACTCAATA 58.058 36.000 0.00 0.00 0.00 1.90
3252 3557 4.385405 GCACACTCAGCGGGCTCT 62.385 66.667 0.00 0.00 0.00 4.09
3296 3601 6.588719 AGCAGCATTGAAAAAGGTAATACA 57.411 33.333 0.00 0.00 0.00 2.29
3372 3677 8.100791 AGATGTTAGCACCTGATTACAAGTTAA 58.899 33.333 0.00 0.00 0.00 2.01
3540 3845 0.674895 ACCGCCAGATGCTCTTTGAC 60.675 55.000 0.00 0.00 38.05 3.18
3672 3977 5.303078 ACAGCTCTATTATGAGACGGAATGT 59.697 40.000 0.00 0.00 36.23 2.71
3690 3995 6.202954 CGGAATGTTCTATTATGGGTGAAGTC 59.797 42.308 0.00 0.00 0.00 3.01
3749 4054 4.390264 AGTACAGAAGCAAGGGAAGAAAC 58.610 43.478 0.00 0.00 0.00 2.78
3786 4091 5.250543 TGAGGAACCTATTTTGGACTCATCA 59.749 40.000 0.00 0.00 34.06 3.07
3787 4092 5.749462 AGGAACCTATTTTGGACTCATCAG 58.251 41.667 0.00 0.00 0.00 2.90
3948 4253 1.021390 CACCTTACCTGCTGGCTTCG 61.021 60.000 9.95 0.00 36.63 3.79
3960 4265 1.532868 CTGGCTTCGGACAAAGAAGTG 59.467 52.381 7.63 0.00 44.97 3.16
4125 4430 2.370519 TCTTGTTCTCGTTGAATGGGGA 59.629 45.455 0.00 0.00 36.99 4.81
4126 4431 2.940994 TGTTCTCGTTGAATGGGGAA 57.059 45.000 0.00 0.00 36.99 3.97
4127 4432 3.433306 TGTTCTCGTTGAATGGGGAAT 57.567 42.857 0.00 0.00 36.99 3.01
4128 4433 3.761897 TGTTCTCGTTGAATGGGGAATT 58.238 40.909 0.00 0.00 36.99 2.17
4129 4434 3.756434 TGTTCTCGTTGAATGGGGAATTC 59.244 43.478 0.00 0.00 44.37 2.17
4130 4435 2.999331 TCTCGTTGAATGGGGAATTCC 58.001 47.619 16.74 16.74 43.61 3.01
4131 4436 1.670811 CTCGTTGAATGGGGAATTCCG 59.329 52.381 18.30 3.67 43.61 4.30
4132 4437 0.100503 CGTTGAATGGGGAATTCCGC 59.899 55.000 29.66 29.66 43.61 5.54
4139 4444 3.821306 GGGGAATTCCGCCTATGTT 57.179 52.632 27.01 0.00 43.94 2.71
4140 4445 1.318576 GGGGAATTCCGCCTATGTTG 58.681 55.000 27.01 0.00 43.94 3.33
4141 4446 1.409661 GGGGAATTCCGCCTATGTTGT 60.410 52.381 27.01 0.00 43.94 3.32
4142 4447 1.947456 GGGAATTCCGCCTATGTTGTC 59.053 52.381 18.30 0.00 36.71 3.18
4143 4448 2.421529 GGGAATTCCGCCTATGTTGTCT 60.422 50.000 18.30 0.00 36.71 3.41
4144 4449 2.872858 GGAATTCCGCCTATGTTGTCTC 59.127 50.000 9.17 0.00 0.00 3.36
4145 4450 3.531538 GAATTCCGCCTATGTTGTCTCA 58.468 45.455 0.00 0.00 0.00 3.27
4146 4451 3.627395 ATTCCGCCTATGTTGTCTCAA 57.373 42.857 0.00 0.00 0.00 3.02
4147 4452 2.380084 TCCGCCTATGTTGTCTCAAC 57.620 50.000 5.78 5.78 0.00 3.18
4148 4453 1.621317 TCCGCCTATGTTGTCTCAACA 59.379 47.619 15.83 15.83 34.31 3.33
4149 4454 1.732259 CCGCCTATGTTGTCTCAACAC 59.268 52.381 15.82 4.68 34.35 3.32
4150 4455 2.412870 CGCCTATGTTGTCTCAACACA 58.587 47.619 15.82 5.57 34.35 3.72
4151 4456 2.413112 CGCCTATGTTGTCTCAACACAG 59.587 50.000 15.82 13.91 34.35 3.66
4152 4457 2.160417 GCCTATGTTGTCTCAACACAGC 59.840 50.000 15.82 14.40 34.35 4.40
4153 4458 2.744202 CCTATGTTGTCTCAACACAGCC 59.256 50.000 15.82 0.00 34.35 4.85
4154 4459 1.229428 ATGTTGTCTCAACACAGCCG 58.771 50.000 15.82 0.00 34.35 5.52
4155 4460 0.813610 TGTTGTCTCAACACAGCCGG 60.814 55.000 10.63 0.00 34.35 6.13
4156 4461 0.814010 GTTGTCTCAACACAGCCGGT 60.814 55.000 1.90 0.00 34.35 5.28
4157 4462 0.531974 TTGTCTCAACACAGCCGGTC 60.532 55.000 1.90 0.00 34.35 4.79
4158 4463 1.668151 GTCTCAACACAGCCGGTCC 60.668 63.158 1.90 0.00 0.00 4.46
4159 4464 2.358737 CTCAACACAGCCGGTCCC 60.359 66.667 1.90 0.00 0.00 4.46
4160 4465 3.164977 TCAACACAGCCGGTCCCA 61.165 61.111 1.90 0.00 0.00 4.37
4161 4466 2.203280 CAACACAGCCGGTCCCAA 60.203 61.111 1.90 0.00 0.00 4.12
4162 4467 2.113139 AACACAGCCGGTCCCAAG 59.887 61.111 1.90 0.00 0.00 3.61
4163 4468 2.752807 AACACAGCCGGTCCCAAGT 61.753 57.895 1.90 0.00 0.00 3.16
4164 4469 2.358737 CACAGCCGGTCCCAAGTC 60.359 66.667 1.90 0.00 0.00 3.01
4165 4470 3.637273 ACAGCCGGTCCCAAGTCC 61.637 66.667 1.90 0.00 0.00 3.85
4166 4471 4.760047 CAGCCGGTCCCAAGTCCG 62.760 72.222 1.90 0.00 43.32 4.79
4175 4480 2.379288 CCCAAGTCCGGGTAAAGGA 58.621 57.895 0.00 0.00 41.83 3.36
4176 4481 0.252197 CCCAAGTCCGGGTAAAGGAG 59.748 60.000 0.00 0.00 41.83 3.69
4177 4482 0.252197 CCAAGTCCGGGTAAAGGAGG 59.748 60.000 0.00 0.00 38.65 4.30
4178 4483 1.272807 CAAGTCCGGGTAAAGGAGGA 58.727 55.000 0.00 0.00 38.65 3.71
4179 4484 1.207329 CAAGTCCGGGTAAAGGAGGAG 59.793 57.143 0.00 0.00 38.65 3.69
4180 4485 0.325390 AGTCCGGGTAAAGGAGGAGG 60.325 60.000 0.00 0.00 38.65 4.30
4181 4486 1.002533 TCCGGGTAAAGGAGGAGGG 59.997 63.158 0.00 0.00 33.19 4.30
4182 4487 1.306739 CCGGGTAAAGGAGGAGGGT 60.307 63.158 0.00 0.00 0.00 4.34
4183 4488 0.912968 CCGGGTAAAGGAGGAGGGTT 60.913 60.000 0.00 0.00 0.00 4.11
4184 4489 0.252197 CGGGTAAAGGAGGAGGGTTG 59.748 60.000 0.00 0.00 0.00 3.77
4185 4490 1.369403 GGGTAAAGGAGGAGGGTTGT 58.631 55.000 0.00 0.00 0.00 3.32
4186 4491 1.004394 GGGTAAAGGAGGAGGGTTGTG 59.996 57.143 0.00 0.00 0.00 3.33
4187 4492 1.982958 GGTAAAGGAGGAGGGTTGTGA 59.017 52.381 0.00 0.00 0.00 3.58
4188 4493 2.576648 GGTAAAGGAGGAGGGTTGTGAT 59.423 50.000 0.00 0.00 0.00 3.06
4189 4494 3.778629 GGTAAAGGAGGAGGGTTGTGATA 59.221 47.826 0.00 0.00 0.00 2.15
4190 4495 4.141688 GGTAAAGGAGGAGGGTTGTGATAG 60.142 50.000 0.00 0.00 0.00 2.08
4191 4496 2.182516 AGGAGGAGGGTTGTGATAGG 57.817 55.000 0.00 0.00 0.00 2.57
4192 4497 0.470341 GGAGGAGGGTTGTGATAGGC 59.530 60.000 0.00 0.00 0.00 3.93
4193 4498 1.501582 GAGGAGGGTTGTGATAGGCT 58.498 55.000 0.00 0.00 0.00 4.58
4194 4499 1.840635 GAGGAGGGTTGTGATAGGCTT 59.159 52.381 0.00 0.00 0.00 4.35
4195 4500 2.239907 GAGGAGGGTTGTGATAGGCTTT 59.760 50.000 0.00 0.00 0.00 3.51
4196 4501 2.649816 AGGAGGGTTGTGATAGGCTTTT 59.350 45.455 0.00 0.00 0.00 2.27
4197 4502 3.017442 GGAGGGTTGTGATAGGCTTTTC 58.983 50.000 0.00 0.00 0.00 2.29
4198 4503 2.678336 GAGGGTTGTGATAGGCTTTTCG 59.322 50.000 0.00 0.00 0.00 3.46
4199 4504 2.304761 AGGGTTGTGATAGGCTTTTCGA 59.695 45.455 0.00 0.00 0.00 3.71
4200 4505 2.678336 GGGTTGTGATAGGCTTTTCGAG 59.322 50.000 0.00 0.00 0.00 4.04
4210 4515 2.673976 GCTTTTCGAGCCAACGTAAA 57.326 45.000 0.00 0.00 46.01 2.01
4211 4516 2.989641 GCTTTTCGAGCCAACGTAAAA 58.010 42.857 0.00 0.00 46.01 1.52
4212 4517 2.971261 GCTTTTCGAGCCAACGTAAAAG 59.029 45.455 11.36 11.36 46.01 2.27
4213 4518 2.673976 TTTCGAGCCAACGTAAAAGC 57.326 45.000 0.00 0.00 34.70 3.51
4214 4519 1.873698 TTCGAGCCAACGTAAAAGCT 58.126 45.000 0.00 0.00 38.56 3.74
4215 4520 1.425412 TCGAGCCAACGTAAAAGCTC 58.575 50.000 15.27 15.27 46.54 4.09
4218 4523 0.875059 AGCCAACGTAAAAGCTCAGC 59.125 50.000 0.00 0.00 0.00 4.26
4219 4524 0.109735 GCCAACGTAAAAGCTCAGCC 60.110 55.000 0.00 0.00 0.00 4.85
4220 4525 1.234821 CCAACGTAAAAGCTCAGCCA 58.765 50.000 0.00 0.00 0.00 4.75
4221 4526 1.069227 CCAACGTAAAAGCTCAGCCAC 60.069 52.381 0.00 0.00 0.00 5.01
4222 4527 1.873591 CAACGTAAAAGCTCAGCCACT 59.126 47.619 0.00 0.00 0.00 4.00
4223 4528 1.797025 ACGTAAAAGCTCAGCCACTC 58.203 50.000 0.00 0.00 0.00 3.51
4224 4529 1.344763 ACGTAAAAGCTCAGCCACTCT 59.655 47.619 0.00 0.00 0.00 3.24
4225 4530 2.224305 ACGTAAAAGCTCAGCCACTCTT 60.224 45.455 0.00 0.00 0.00 2.85
4226 4531 3.006537 ACGTAAAAGCTCAGCCACTCTTA 59.993 43.478 0.00 0.00 0.00 2.10
4227 4532 4.184629 CGTAAAAGCTCAGCCACTCTTAT 58.815 43.478 0.00 0.00 0.00 1.73
4228 4533 4.033358 CGTAAAAGCTCAGCCACTCTTATG 59.967 45.833 0.00 0.00 0.00 1.90
4229 4534 2.706339 AAGCTCAGCCACTCTTATGG 57.294 50.000 0.00 0.00 43.26 2.74
4230 4535 1.871418 AGCTCAGCCACTCTTATGGA 58.129 50.000 0.00 0.00 43.02 3.41
4231 4536 1.761784 AGCTCAGCCACTCTTATGGAG 59.238 52.381 0.00 0.00 43.02 3.86
4232 4537 1.759445 GCTCAGCCACTCTTATGGAGA 59.241 52.381 0.00 0.00 44.45 3.71
4233 4538 2.368221 GCTCAGCCACTCTTATGGAGAT 59.632 50.000 0.00 0.00 44.45 2.75
4234 4539 3.803021 GCTCAGCCACTCTTATGGAGATG 60.803 52.174 0.00 0.00 44.45 2.90
4235 4540 3.640498 CTCAGCCACTCTTATGGAGATGA 59.360 47.826 0.00 0.00 44.45 2.92
4236 4541 4.033009 TCAGCCACTCTTATGGAGATGAA 58.967 43.478 0.00 0.00 44.45 2.57
4237 4542 4.471025 TCAGCCACTCTTATGGAGATGAAA 59.529 41.667 0.00 0.00 44.45 2.69
4238 4543 4.574013 CAGCCACTCTTATGGAGATGAAAC 59.426 45.833 0.00 0.00 44.45 2.78
4239 4544 3.879892 GCCACTCTTATGGAGATGAAACC 59.120 47.826 0.00 0.00 44.45 3.27
4240 4545 4.455606 CCACTCTTATGGAGATGAAACCC 58.544 47.826 4.83 0.00 44.45 4.11
4241 4546 4.080356 CCACTCTTATGGAGATGAAACCCA 60.080 45.833 4.83 0.00 44.45 4.51
4242 4547 5.500234 CACTCTTATGGAGATGAAACCCAA 58.500 41.667 4.83 0.00 44.45 4.12
4243 4548 5.945784 CACTCTTATGGAGATGAAACCCAAA 59.054 40.000 4.83 0.00 44.45 3.28
4244 4549 6.434028 CACTCTTATGGAGATGAAACCCAAAA 59.566 38.462 4.83 0.00 44.45 2.44
4245 4550 6.660949 ACTCTTATGGAGATGAAACCCAAAAG 59.339 38.462 4.83 0.00 44.45 2.27
4246 4551 6.789268 TCTTATGGAGATGAAACCCAAAAGA 58.211 36.000 0.00 0.00 33.15 2.52
4247 4552 7.413446 TCTTATGGAGATGAAACCCAAAAGAT 58.587 34.615 0.00 0.00 33.15 2.40
4248 4553 7.557719 TCTTATGGAGATGAAACCCAAAAGATC 59.442 37.037 0.00 0.00 33.15 2.75
4249 4554 4.996793 TGGAGATGAAACCCAAAAGATCA 58.003 39.130 0.00 0.00 0.00 2.92
4250 4555 4.766891 TGGAGATGAAACCCAAAAGATCAC 59.233 41.667 0.00 0.00 0.00 3.06
4251 4556 4.158579 GGAGATGAAACCCAAAAGATCACC 59.841 45.833 0.00 0.00 0.00 4.02
4252 4557 5.003096 AGATGAAACCCAAAAGATCACCT 57.997 39.130 0.00 0.00 0.00 4.00
4253 4558 5.012893 AGATGAAACCCAAAAGATCACCTC 58.987 41.667 0.00 0.00 0.00 3.85
4254 4559 4.453480 TGAAACCCAAAAGATCACCTCT 57.547 40.909 0.00 0.00 34.96 3.69
4255 4560 5.576563 TGAAACCCAAAAGATCACCTCTA 57.423 39.130 0.00 0.00 32.41 2.43
4256 4561 5.560724 TGAAACCCAAAAGATCACCTCTAG 58.439 41.667 0.00 0.00 32.41 2.43
4257 4562 3.636153 ACCCAAAAGATCACCTCTAGC 57.364 47.619 0.00 0.00 32.41 3.42
4258 4563 2.239907 ACCCAAAAGATCACCTCTAGCC 59.760 50.000 0.00 0.00 32.41 3.93
4259 4564 2.507471 CCCAAAAGATCACCTCTAGCCT 59.493 50.000 0.00 0.00 32.41 4.58
4260 4565 3.711704 CCCAAAAGATCACCTCTAGCCTA 59.288 47.826 0.00 0.00 32.41 3.93
4261 4566 4.443598 CCCAAAAGATCACCTCTAGCCTAC 60.444 50.000 0.00 0.00 32.41 3.18
4262 4567 4.443598 CCAAAAGATCACCTCTAGCCTACC 60.444 50.000 0.00 0.00 32.41 3.18
4263 4568 2.687003 AGATCACCTCTAGCCTACCC 57.313 55.000 0.00 0.00 30.26 3.69
4264 4569 1.148236 AGATCACCTCTAGCCTACCCC 59.852 57.143 0.00 0.00 30.26 4.95
4265 4570 0.941963 ATCACCTCTAGCCTACCCCA 59.058 55.000 0.00 0.00 0.00 4.96
4266 4571 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12
4267 4572 0.831307 CACCTCTAGCCTACCCCAAC 59.169 60.000 0.00 0.00 0.00 3.77
4268 4573 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16
4269 4574 1.080666 ACCTCTAGCCTACCCCAACTT 59.919 52.381 0.00 0.00 0.00 2.66
4270 4575 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
4271 4576 2.188817 CTCTAGCCTACCCCAACTTGT 58.811 52.381 0.00 0.00 0.00 3.16
4272 4577 2.572104 CTCTAGCCTACCCCAACTTGTT 59.428 50.000 0.00 0.00 0.00 2.83
4273 4578 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
4274 4579 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
4284 4589 3.177997 CAACTTGTTTGGGACCAAAGG 57.822 47.619 16.33 11.81 45.16 3.11
4285 4590 1.119684 ACTTGTTTGGGACCAAAGGC 58.880 50.000 16.33 7.06 45.16 4.35
4286 4591 1.342975 ACTTGTTTGGGACCAAAGGCT 60.343 47.619 16.33 0.00 45.16 4.58
4287 4592 1.762370 CTTGTTTGGGACCAAAGGCTT 59.238 47.619 16.33 0.00 45.16 4.35
4288 4593 1.872773 TGTTTGGGACCAAAGGCTTT 58.127 45.000 16.33 6.68 45.16 3.51
4289 4594 1.484240 TGTTTGGGACCAAAGGCTTTG 59.516 47.619 28.79 28.79 45.16 2.77
4290 4595 1.484653 GTTTGGGACCAAAGGCTTTGT 59.515 47.619 31.68 22.03 45.16 2.83
4291 4596 1.872773 TTGGGACCAAAGGCTTTGTT 58.127 45.000 31.68 22.65 38.98 2.83
4292 4597 1.118838 TGGGACCAAAGGCTTTGTTG 58.881 50.000 31.68 22.18 38.98 3.33
4293 4598 1.119684 GGGACCAAAGGCTTTGTTGT 58.880 50.000 31.68 24.78 38.98 3.32
4294 4599 1.484653 GGGACCAAAGGCTTTGTTGTT 59.515 47.619 31.68 16.91 38.98 2.83
4295 4600 2.549926 GGACCAAAGGCTTTGTTGTTG 58.450 47.619 31.68 20.95 38.98 3.33
4296 4601 2.093711 GGACCAAAGGCTTTGTTGTTGT 60.094 45.455 31.68 23.54 38.98 3.32
4297 4602 3.595173 GACCAAAGGCTTTGTTGTTGTT 58.405 40.909 31.68 11.74 38.98 2.83
4298 4603 3.333804 ACCAAAGGCTTTGTTGTTGTTG 58.666 40.909 31.68 19.13 38.98 3.33
4299 4604 3.244387 ACCAAAGGCTTTGTTGTTGTTGT 60.244 39.130 31.68 19.69 38.98 3.32
4300 4605 3.750652 CCAAAGGCTTTGTTGTTGTTGTT 59.249 39.130 31.68 0.00 38.98 2.83
4301 4606 4.378253 CCAAAGGCTTTGTTGTTGTTGTTG 60.378 41.667 31.68 13.01 38.98 3.33
4302 4607 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
4303 4608 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
4304 4609 3.993736 AGGCTTTGTTGTTGTTGTTGTTC 59.006 39.130 0.00 0.00 0.00 3.18
4305 4610 3.993736 GGCTTTGTTGTTGTTGTTGTTCT 59.006 39.130 0.00 0.00 0.00 3.01
4306 4611 4.091365 GGCTTTGTTGTTGTTGTTGTTCTC 59.909 41.667 0.00 0.00 0.00 2.87
4307 4612 4.201485 GCTTTGTTGTTGTTGTTGTTCTCG 60.201 41.667 0.00 0.00 0.00 4.04
4308 4613 4.491234 TTGTTGTTGTTGTTGTTCTCGT 57.509 36.364 0.00 0.00 0.00 4.18
4309 4614 4.491234 TGTTGTTGTTGTTGTTCTCGTT 57.509 36.364 0.00 0.00 0.00 3.85
4310 4615 4.222886 TGTTGTTGTTGTTGTTCTCGTTG 58.777 39.130 0.00 0.00 0.00 4.10
4311 4616 4.023963 TGTTGTTGTTGTTGTTCTCGTTGA 60.024 37.500 0.00 0.00 0.00 3.18
4312 4617 4.750952 TGTTGTTGTTGTTCTCGTTGAA 57.249 36.364 0.00 0.00 0.00 2.69
4313 4618 5.303747 TGTTGTTGTTGTTCTCGTTGAAT 57.696 34.783 0.00 0.00 36.99 2.57
4314 4619 5.092105 TGTTGTTGTTGTTCTCGTTGAATG 58.908 37.500 0.00 0.00 36.99 2.67
4315 4620 4.285807 TGTTGTTGTTCTCGTTGAATGG 57.714 40.909 0.00 0.00 36.99 3.16
4316 4621 3.066064 TGTTGTTGTTCTCGTTGAATGGG 59.934 43.478 0.00 0.00 36.99 4.00
4317 4622 3.201353 TGTTGTTCTCGTTGAATGGGA 57.799 42.857 0.00 0.00 36.99 4.37
4436 4741 4.030216 AGGCTAGAGAGAAGGAAAAGGAG 58.970 47.826 0.00 0.00 0.00 3.69
4524 4829 9.672673 ATGACTGCATGTATATTTTATACTCCC 57.327 33.333 0.00 0.00 32.31 4.30
4525 4830 8.880244 TGACTGCATGTATATTTTATACTCCCT 58.120 33.333 0.00 0.00 0.00 4.20
4526 4831 9.372369 GACTGCATGTATATTTTATACTCCCTC 57.628 37.037 0.00 0.00 0.00 4.30
4527 4832 8.322091 ACTGCATGTATATTTTATACTCCCTCC 58.678 37.037 0.00 0.00 0.00 4.30
4528 4833 7.327975 TGCATGTATATTTTATACTCCCTCCG 58.672 38.462 0.00 0.00 0.00 4.63
4529 4834 7.038587 TGCATGTATATTTTATACTCCCTCCGT 60.039 37.037 0.00 0.00 0.00 4.69
4530 4835 7.491696 GCATGTATATTTTATACTCCCTCCGTC 59.508 40.741 0.00 0.00 0.00 4.79
4531 4836 7.472334 TGTATATTTTATACTCCCTCCGTCC 57.528 40.000 6.32 0.00 0.00 4.79
4532 4837 5.656213 ATATTTTATACTCCCTCCGTCCG 57.344 43.478 0.00 0.00 0.00 4.79
4533 4838 1.696063 TTTATACTCCCTCCGTCCGG 58.304 55.000 0.00 0.00 0.00 5.14
4534 4839 0.846015 TTATACTCCCTCCGTCCGGA 59.154 55.000 0.00 0.00 42.90 5.14
4535 4840 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
4536 4841 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
4537 4842 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
4538 4843 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
4539 4844 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4540 4845 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4541 4846 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4542 4847 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4543 4848 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4544 4849 2.354403 CCTCCGTCCGGAAATACTTGTT 60.354 50.000 5.23 0.00 44.66 2.83
4545 4850 2.671396 CTCCGTCCGGAAATACTTGTTG 59.329 50.000 5.23 0.00 44.66 3.33
4546 4851 1.735571 CCGTCCGGAAATACTTGTTGG 59.264 52.381 5.23 0.00 37.50 3.77
4547 4852 2.613474 CCGTCCGGAAATACTTGTTGGA 60.613 50.000 5.23 0.00 37.50 3.53
4548 4853 2.671396 CGTCCGGAAATACTTGTTGGAG 59.329 50.000 5.23 0.00 0.00 3.86
4549 4854 3.007635 GTCCGGAAATACTTGTTGGAGG 58.992 50.000 5.23 0.00 0.00 4.30
4550 4855 2.907696 TCCGGAAATACTTGTTGGAGGA 59.092 45.455 0.00 0.00 0.00 3.71
4551 4856 3.328343 TCCGGAAATACTTGTTGGAGGAA 59.672 43.478 0.00 0.00 0.00 3.36
4552 4857 4.018779 TCCGGAAATACTTGTTGGAGGAAT 60.019 41.667 0.00 0.00 0.00 3.01
4553 4858 4.096382 CCGGAAATACTTGTTGGAGGAATG 59.904 45.833 0.00 0.00 0.00 2.67
4554 4859 4.438744 CGGAAATACTTGTTGGAGGAATGC 60.439 45.833 0.00 0.00 0.00 3.56
4555 4860 4.462483 GGAAATACTTGTTGGAGGAATGCA 59.538 41.667 0.00 0.00 0.00 3.96
4556 4861 5.127682 GGAAATACTTGTTGGAGGAATGCAT 59.872 40.000 0.00 0.00 0.00 3.96
4557 4862 6.321181 GGAAATACTTGTTGGAGGAATGCATA 59.679 38.462 0.00 0.00 0.00 3.14
4558 4863 7.147915 GGAAATACTTGTTGGAGGAATGCATAA 60.148 37.037 0.00 0.00 0.00 1.90
4559 4864 7.716799 AATACTTGTTGGAGGAATGCATAAA 57.283 32.000 0.00 0.00 0.00 1.40
4560 4865 7.716799 ATACTTGTTGGAGGAATGCATAAAA 57.283 32.000 0.00 0.00 0.00 1.52
4561 4866 6.418057 ACTTGTTGGAGGAATGCATAAAAA 57.582 33.333 0.00 0.00 0.00 1.94
4562 4867 7.008021 ACTTGTTGGAGGAATGCATAAAAAT 57.992 32.000 0.00 0.00 0.00 1.82
4563 4868 6.875195 ACTTGTTGGAGGAATGCATAAAAATG 59.125 34.615 0.00 0.00 0.00 2.32
4564 4869 5.732633 TGTTGGAGGAATGCATAAAAATGG 58.267 37.500 0.00 0.00 0.00 3.16
4565 4870 5.483231 TGTTGGAGGAATGCATAAAAATGGA 59.517 36.000 0.00 0.00 0.00 3.41
4566 4871 6.156602 TGTTGGAGGAATGCATAAAAATGGAT 59.843 34.615 0.00 0.00 33.93 3.41
4567 4872 6.164417 TGGAGGAATGCATAAAAATGGATG 57.836 37.500 0.00 0.00 32.82 3.51
4568 4873 5.662208 TGGAGGAATGCATAAAAATGGATGT 59.338 36.000 0.00 0.00 32.82 3.06
4569 4874 6.838090 TGGAGGAATGCATAAAAATGGATGTA 59.162 34.615 0.00 0.00 32.82 2.29
4570 4875 7.510001 TGGAGGAATGCATAAAAATGGATGTAT 59.490 33.333 0.00 0.00 32.82 2.29
4571 4876 8.031277 GGAGGAATGCATAAAAATGGATGTATC 58.969 37.037 0.00 0.00 32.82 2.24
4572 4877 8.716674 AGGAATGCATAAAAATGGATGTATCT 57.283 30.769 0.00 0.00 32.82 1.98
4573 4878 9.812347 AGGAATGCATAAAAATGGATGTATCTA 57.188 29.630 0.00 0.00 32.82 1.98
4578 4883 9.851686 TGCATAAAAATGGATGTATCTAGAACT 57.148 29.630 0.00 0.00 0.00 3.01
4605 4910 8.423906 AAATACGTCTAGATACATCCATTCCT 57.576 34.615 0.00 0.00 0.00 3.36
4606 4911 5.968528 ACGTCTAGATACATCCATTCCTC 57.031 43.478 0.00 0.00 0.00 3.71
4607 4912 4.767928 ACGTCTAGATACATCCATTCCTCC 59.232 45.833 0.00 0.00 0.00 4.30
4608 4913 4.142578 CGTCTAGATACATCCATTCCTCCG 60.143 50.000 0.00 0.00 0.00 4.63
4609 4914 5.010933 GTCTAGATACATCCATTCCTCCGA 58.989 45.833 0.00 0.00 0.00 4.55
4610 4915 5.010933 TCTAGATACATCCATTCCTCCGAC 58.989 45.833 0.00 0.00 0.00 4.79
4611 4916 2.558795 AGATACATCCATTCCTCCGACG 59.441 50.000 0.00 0.00 0.00 5.12
4612 4917 2.061509 TACATCCATTCCTCCGACGA 57.938 50.000 0.00 0.00 0.00 4.20
4613 4918 0.460311 ACATCCATTCCTCCGACGAC 59.540 55.000 0.00 0.00 0.00 4.34
4614 4919 0.459899 CATCCATTCCTCCGACGACA 59.540 55.000 0.00 0.00 0.00 4.35
4615 4920 1.134818 CATCCATTCCTCCGACGACAA 60.135 52.381 0.00 0.00 0.00 3.18
4616 4921 0.530744 TCCATTCCTCCGACGACAAG 59.469 55.000 0.00 0.00 0.00 3.16
4617 4922 0.246635 CCATTCCTCCGACGACAAGT 59.753 55.000 0.00 0.00 0.00 3.16
4618 4923 1.475280 CCATTCCTCCGACGACAAGTA 59.525 52.381 0.00 0.00 0.00 2.24
4619 4924 2.100916 CCATTCCTCCGACGACAAGTAT 59.899 50.000 0.00 0.00 0.00 2.12
4620 4925 3.430374 CCATTCCTCCGACGACAAGTATT 60.430 47.826 0.00 0.00 0.00 1.89
4621 4926 3.947910 TTCCTCCGACGACAAGTATTT 57.052 42.857 0.00 0.00 0.00 1.40
4622 4927 3.498927 TCCTCCGACGACAAGTATTTC 57.501 47.619 0.00 0.00 0.00 2.17
4623 4928 2.165030 TCCTCCGACGACAAGTATTTCC 59.835 50.000 0.00 0.00 0.00 3.13
4624 4929 2.182825 CTCCGACGACAAGTATTTCCG 58.817 52.381 0.00 0.00 0.00 4.30
4625 4930 1.135315 TCCGACGACAAGTATTTCCGG 60.135 52.381 0.00 0.00 36.80 5.14
4626 4931 1.135315 CCGACGACAAGTATTTCCGGA 60.135 52.381 0.00 0.00 37.40 5.14
4627 4932 1.916000 CGACGACAAGTATTTCCGGAC 59.084 52.381 1.83 0.00 0.00 4.79
4628 4933 1.916000 GACGACAAGTATTTCCGGACG 59.084 52.381 1.83 3.25 0.00 4.79
4629 4934 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
4630 4935 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
4631 4936 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
4632 4937 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4633 4938 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4634 4939 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
4635 4940 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
4666 4971 2.855963 GCACATGAATGCAATGCACTAC 59.144 45.455 11.23 5.62 45.39 2.73
4774 5080 4.789784 TGCTGGCGTTTAATTTGTTACTC 58.210 39.130 0.00 0.00 0.00 2.59
4775 5081 4.163552 GCTGGCGTTTAATTTGTTACTCC 58.836 43.478 0.00 0.00 0.00 3.85
4776 5082 4.729595 CTGGCGTTTAATTTGTTACTCCC 58.270 43.478 0.00 0.00 0.00 4.30
4777 5083 4.400120 TGGCGTTTAATTTGTTACTCCCT 58.600 39.130 0.00 0.00 0.00 4.20
4778 5084 4.456566 TGGCGTTTAATTTGTTACTCCCTC 59.543 41.667 0.00 0.00 0.00 4.30
4779 5085 4.142534 GGCGTTTAATTTGTTACTCCCTCC 60.143 45.833 0.00 0.00 0.00 4.30
4780 5086 4.436451 GCGTTTAATTTGTTACTCCCTCCG 60.436 45.833 0.00 0.00 0.00 4.63
4781 5087 4.692155 CGTTTAATTTGTTACTCCCTCCGT 59.308 41.667 0.00 0.00 0.00 4.69
4782 5088 5.163923 CGTTTAATTTGTTACTCCCTCCGTC 60.164 44.000 0.00 0.00 0.00 4.79
4783 5089 3.345508 AATTTGTTACTCCCTCCGTCC 57.654 47.619 0.00 0.00 0.00 4.79
4784 5090 0.978907 TTTGTTACTCCCTCCGTCCC 59.021 55.000 0.00 0.00 0.00 4.46
4785 5091 0.178926 TTGTTACTCCCTCCGTCCCA 60.179 55.000 0.00 0.00 0.00 4.37
4786 5092 0.178926 TGTTACTCCCTCCGTCCCAA 60.179 55.000 0.00 0.00 0.00 4.12
4787 5093 0.978907 GTTACTCCCTCCGTCCCAAA 59.021 55.000 0.00 0.00 0.00 3.28
4788 5094 1.348696 GTTACTCCCTCCGTCCCAAAA 59.651 52.381 0.00 0.00 0.00 2.44
4789 5095 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
4790 5096 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
4791 5097 2.488836 ACTCCCTCCGTCCCAAAATAT 58.511 47.619 0.00 0.00 0.00 1.28
4792 5098 3.660959 ACTCCCTCCGTCCCAAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
4793 5099 4.042174 ACTCCCTCCGTCCCAAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
4794 5100 4.102681 ACTCCCTCCGTCCCAAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
4795 5101 4.300345 TCCCTCCGTCCCAAAATATAAGA 58.700 43.478 0.00 0.00 0.00 2.10
4796 5102 4.722781 TCCCTCCGTCCCAAAATATAAGAA 59.277 41.667 0.00 0.00 0.00 2.52
4797 5103 4.820173 CCCTCCGTCCCAAAATATAAGAAC 59.180 45.833 0.00 0.00 0.00 3.01
4798 5104 4.510340 CCTCCGTCCCAAAATATAAGAACG 59.490 45.833 0.00 0.00 0.00 3.95
4799 5105 5.088680 TCCGTCCCAAAATATAAGAACGT 57.911 39.130 0.00 0.00 0.00 3.99
4800 5106 5.490159 TCCGTCCCAAAATATAAGAACGTT 58.510 37.500 0.00 0.00 0.00 3.99
4801 5107 5.939296 TCCGTCCCAAAATATAAGAACGTTT 59.061 36.000 0.46 0.00 0.00 3.60
4802 5108 6.430616 TCCGTCCCAAAATATAAGAACGTTTT 59.569 34.615 0.46 0.00 0.00 2.43
4803 5109 7.040548 TCCGTCCCAAAATATAAGAACGTTTTT 60.041 33.333 9.22 9.22 0.00 1.94
4804 5110 8.235905 CCGTCCCAAAATATAAGAACGTTTTTA 58.764 33.333 13.02 13.02 0.00 1.52
4805 5111 9.609950 CGTCCCAAAATATAAGAACGTTTTTAA 57.390 29.630 14.41 5.85 0.00 1.52
4841 5147 9.326413 AGTGTAAAATCGTTCTTATATTCTGGG 57.674 33.333 0.00 0.00 0.00 4.45
4842 5148 9.321562 GTGTAAAATCGTTCTTATATTCTGGGA 57.678 33.333 0.00 0.00 0.00 4.37
4843 5149 9.321562 TGTAAAATCGTTCTTATATTCTGGGAC 57.678 33.333 0.00 0.00 0.00 4.46
4844 5150 9.321562 GTAAAATCGTTCTTATATTCTGGGACA 57.678 33.333 0.00 0.00 0.00 4.02
4907 5238 7.847096 TGGTGAGTATGTTTTTGATCTAGCTA 58.153 34.615 0.00 0.00 0.00 3.32
5058 5389 0.538057 CCCAGGCTGTTGCTCTTTCA 60.538 55.000 14.43 0.00 39.59 2.69
5067 5398 2.034939 TGTTGCTCTTTCAATGCAGGTG 59.965 45.455 0.00 0.00 38.01 4.00
5107 5438 5.126061 CCATCTTAGGCTTAGCACATGTTTT 59.874 40.000 6.53 0.00 0.00 2.43
5109 5440 4.458989 TCTTAGGCTTAGCACATGTTTTGG 59.541 41.667 6.53 0.00 0.00 3.28
5137 5469 3.554324 CCACACCGCACACATACTTATAC 59.446 47.826 0.00 0.00 0.00 1.47
5140 5472 4.081309 ACACCGCACACATACTTATACCTT 60.081 41.667 0.00 0.00 0.00 3.50
5226 5560 2.742372 GCGGAAAGAAGGCTCGCA 60.742 61.111 10.62 0.00 44.87 5.10
5494 5840 1.305381 AACTAGTCCGGAGCTGGCT 60.305 57.895 3.06 0.00 0.00 4.75
5495 5841 0.905337 AACTAGTCCGGAGCTGGCTT 60.905 55.000 3.06 2.52 0.00 4.35
5536 5883 3.215151 TGTTTTTACGCCATCTGAACCA 58.785 40.909 0.00 0.00 0.00 3.67
5566 5926 1.852157 AGGTCACATGCCAAGGGGA 60.852 57.895 0.00 0.00 35.59 4.81
5567 5927 1.379044 GGTCACATGCCAAGGGGAG 60.379 63.158 0.00 0.00 35.59 4.30
5568 5928 1.380302 GTCACATGCCAAGGGGAGT 59.620 57.895 0.00 0.00 35.59 3.85
5569 5929 0.251341 GTCACATGCCAAGGGGAGTT 60.251 55.000 0.00 0.00 35.59 3.01
5570 5930 0.482446 TCACATGCCAAGGGGAGTTT 59.518 50.000 0.00 0.00 35.59 2.66
5583 5943 1.368850 GAGTTTGTTCGTGCGTGGC 60.369 57.895 0.00 0.00 0.00 5.01
5623 5983 0.038343 GCTTTTGCCGAAATGCCAGA 60.038 50.000 0.00 0.00 36.62 3.86
5815 6177 2.335712 AAAAGGCGTGGCTAGCAGC 61.336 57.895 18.24 17.67 41.46 5.25
5835 6197 2.978452 GATCCATGGTGTCCTCGGCG 62.978 65.000 12.58 0.00 0.00 6.46
5882 6244 1.712018 CTCTCCGTGTGCATGCATGG 61.712 60.000 25.64 24.19 44.70 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.331478 TTTTATTTCCTGCCGACCGTA 57.669 42.857 0.00 0.00 0.00 4.02
1 2 2.188062 TTTTATTTCCTGCCGACCGT 57.812 45.000 0.00 0.00 0.00 4.83
5 6 1.403679 CGCCATTTTATTTCCTGCCGA 59.596 47.619 0.00 0.00 0.00 5.54
6 7 1.535860 CCGCCATTTTATTTCCTGCCG 60.536 52.381 0.00 0.00 0.00 5.69
40 77 5.351189 GTCATTTATTTGCCGCCATTCTTTT 59.649 36.000 0.00 0.00 0.00 2.27
77 128 0.539438 TGCCGCCATTTTCTCCTGTT 60.539 50.000 0.00 0.00 0.00 3.16
78 129 0.539438 TTGCCGCCATTTTCTCCTGT 60.539 50.000 0.00 0.00 0.00 4.00
157 221 3.518992 TCCTCCATTTTCTTTCCCGTT 57.481 42.857 0.00 0.00 0.00 4.44
627 701 2.144078 TCCCTCTTCGGCCAACACA 61.144 57.895 2.24 0.00 0.00 3.72
834 911 8.464404 TCAGCCTTCTCAAAGATAATGAAAATG 58.536 33.333 0.00 0.00 34.14 2.32
838 915 6.715280 AGTCAGCCTTCTCAAAGATAATGAA 58.285 36.000 0.00 0.00 34.14 2.57
839 916 6.305272 AGTCAGCCTTCTCAAAGATAATGA 57.695 37.500 0.00 0.00 34.14 2.57
840 917 7.271511 ACTAGTCAGCCTTCTCAAAGATAATG 58.728 38.462 0.00 0.00 34.14 1.90
841 918 7.430760 ACTAGTCAGCCTTCTCAAAGATAAT 57.569 36.000 0.00 0.00 34.14 1.28
842 919 6.859112 ACTAGTCAGCCTTCTCAAAGATAA 57.141 37.500 0.00 0.00 34.14 1.75
843 920 6.634805 CAACTAGTCAGCCTTCTCAAAGATA 58.365 40.000 0.00 0.00 34.14 1.98
844 921 5.486526 CAACTAGTCAGCCTTCTCAAAGAT 58.513 41.667 0.00 0.00 34.14 2.40
924 1001 1.534595 GGATCCGCTTCATCAATCAGC 59.465 52.381 0.00 0.00 0.00 4.26
985 1062 2.191375 CATGGCTGTGGATCCGCT 59.809 61.111 25.23 2.33 0.00 5.52
986 1063 2.903855 CCATGGCTGTGGATCCGC 60.904 66.667 18.84 18.84 42.02 5.54
1352 1434 2.288702 CCCACATCAATCTAGAGGCTCG 60.289 54.545 9.22 0.00 0.00 5.03
1392 1474 6.743575 AGCATCTAAACACCATTTACACTC 57.256 37.500 0.00 0.00 0.00 3.51
1422 1504 5.121105 TGCTGAAGAATGTGTCCTATGATG 58.879 41.667 0.00 0.00 0.00 3.07
1455 1538 1.257750 ACATACAGCTGCAGGTCCGA 61.258 55.000 17.16 4.30 0.00 4.55
1458 1541 0.392193 AGCACATACAGCTGCAGGTC 60.392 55.000 17.16 2.64 41.61 3.85
1492 1575 4.089361 TCACTATCTGCTGTCCTTCTCAA 58.911 43.478 0.00 0.00 0.00 3.02
1499 1582 5.363101 TCAATTGATCACTATCTGCTGTCC 58.637 41.667 3.38 0.00 32.93 4.02
1513 1596 7.388437 AGATGAATCTAGAGGCTCAATTGATC 58.612 38.462 18.26 18.94 34.85 2.92
1540 1623 5.878406 ATTCCTAGGTACCACTGAATGAG 57.122 43.478 15.94 0.00 0.00 2.90
1613 1696 7.878127 TGACTTCTAATAGGGTTTCAAGTTCTG 59.122 37.037 0.00 0.00 0.00 3.02
1637 1720 4.468713 TCCATGTCAAGTTTGTGGATTGA 58.531 39.130 0.00 0.00 34.23 2.57
1638 1721 4.852134 TCCATGTCAAGTTTGTGGATTG 57.148 40.909 0.00 0.00 34.23 2.67
1639 1722 5.867903 TTTCCATGTCAAGTTTGTGGATT 57.132 34.783 4.21 0.00 38.64 3.01
1640 1723 5.867903 TTTTCCATGTCAAGTTTGTGGAT 57.132 34.783 4.21 0.00 38.64 3.41
1752 1945 2.549926 TGTGGATGTAAGCTATGCACG 58.450 47.619 13.02 0.00 46.07 5.34
1760 1953 0.657840 GACGCCATGTGGATGTAAGC 59.342 55.000 2.55 0.00 37.39 3.09
1801 1994 8.142994 ACATGAACAGTGTACTTTTTAGTGAG 57.857 34.615 0.00 0.00 0.00 3.51
1889 2086 7.499895 AGTCACCAGAGTAGTAAAGTAGATAGC 59.500 40.741 0.00 0.00 0.00 2.97
1890 2087 8.967664 AGTCACCAGAGTAGTAAAGTAGATAG 57.032 38.462 0.00 0.00 0.00 2.08
1938 2135 7.635089 GCCCCAAGATCTAAACTAGTGATTACA 60.635 40.741 0.00 0.00 0.00 2.41
1946 2143 7.410120 AAAATTGCCCCAAGATCTAAACTAG 57.590 36.000 0.00 0.00 0.00 2.57
1980 2177 4.978083 ATCTTCGCAGCATCAAGAATTT 57.022 36.364 3.20 0.00 30.07 1.82
1981 2178 4.397103 TGAATCTTCGCAGCATCAAGAATT 59.603 37.500 3.20 0.00 30.07 2.17
1983 2180 3.337358 TGAATCTTCGCAGCATCAAGAA 58.663 40.909 3.20 0.00 30.07 2.52
1995 2192 6.998258 AGAAAGTTTTGCATTGAATCTTCG 57.002 33.333 0.00 0.00 0.00 3.79
2030 2227 6.822073 ACAATAACCGTTTTTCTTTCAAGC 57.178 33.333 0.00 0.00 0.00 4.01
2039 2236 6.321945 AGTCCCACTTAACAATAACCGTTTTT 59.678 34.615 0.00 0.00 0.00 1.94
2061 2258 8.992835 AGATTCATGCTTTTAAATCCAAAGTC 57.007 30.769 0.00 0.00 34.27 3.01
2155 2352 8.119226 GTCAATAAGATGAGAAACATGTAGCAC 58.881 37.037 0.00 0.00 39.56 4.40
2278 2475 4.388773 TCCAAATCGTCAAACAGAGAATCG 59.611 41.667 0.00 0.00 42.67 3.34
2287 2484 6.255887 CACTAGATACCTCCAAATCGTCAAAC 59.744 42.308 0.00 0.00 0.00 2.93
2344 2541 0.107456 GATGGTGATCCGATGCAGGT 59.893 55.000 0.00 0.00 36.30 4.00
2361 2558 5.249393 TCTTCCTTGCCTTTAACTGAGAGAT 59.751 40.000 0.00 0.00 0.00 2.75
2362 2559 4.593206 TCTTCCTTGCCTTTAACTGAGAGA 59.407 41.667 0.00 0.00 0.00 3.10
2428 2625 6.095377 CAGTATGCATCTCCAAAAAGAAACC 58.905 40.000 0.19 0.00 0.00 3.27
2447 2644 7.502226 TGGTTCTTCATGTTCTTTGAACAGTAT 59.498 33.333 16.50 0.37 36.50 2.12
2512 2709 8.319146 TCATCTTCATGCACATATGATGTAGAT 58.681 33.333 10.38 12.97 42.70 1.98
2694 2891 2.172505 AGCATGGACAATATTCGGGACA 59.827 45.455 0.00 0.00 0.00 4.02
2700 2897 5.067674 TGGCTAACAAGCATGGACAATATTC 59.932 40.000 0.00 0.00 36.33 1.75
2747 2944 9.046296 GTTAGGGTGTACATAGAAATTCATCAG 57.954 37.037 0.00 0.00 0.00 2.90
2771 2968 6.713903 AGAGTGTTGATGTTCTTGATCATGTT 59.286 34.615 8.33 0.00 29.96 2.71
2779 2976 5.998454 AACTGAGAGTGTTGATGTTCTTG 57.002 39.130 0.00 0.00 0.00 3.02
2824 3021 2.084681 GCAACAATGTGCTGCGAGC 61.085 57.895 0.00 1.70 41.51 5.03
2825 3022 1.443194 GGCAACAATGTGCTGCGAG 60.443 57.895 4.24 0.00 40.14 5.03
2826 3023 2.644418 GGCAACAATGTGCTGCGA 59.356 55.556 4.24 0.00 40.14 5.10
2827 3024 1.585267 TAGGGCAACAATGTGCTGCG 61.585 55.000 4.24 0.00 40.14 5.18
2828 3025 0.819582 ATAGGGCAACAATGTGCTGC 59.180 50.000 1.65 1.65 44.31 5.25
2829 3026 1.470285 GCATAGGGCAACAATGTGCTG 60.470 52.381 7.50 0.00 44.31 4.41
2830 3027 0.819582 GCATAGGGCAACAATGTGCT 59.180 50.000 7.50 0.00 44.31 4.40
2831 3028 3.350766 GCATAGGGCAACAATGTGC 57.649 52.632 0.00 0.00 43.97 4.57
2972 3277 1.753956 GCGACAGCAAAATGTTCGTT 58.246 45.000 0.00 0.00 44.35 3.85
2984 3289 4.913376 ACATGATTATCAAAAGCGACAGC 58.087 39.130 0.00 0.00 45.58 4.40
3037 3342 4.822026 AGGTACAACTATGCTGACTGAAC 58.178 43.478 0.00 0.00 0.00 3.18
3061 3366 5.856126 TCTAACTAATTTTGCCAGTCACG 57.144 39.130 0.00 0.00 0.00 4.35
3252 3557 1.672363 TCGTTATAGCGGCGAAGAGAA 59.328 47.619 12.98 0.00 0.00 2.87
3296 3601 8.739972 CCCAAATAAACTTATGCTCTAAACTGT 58.260 33.333 0.00 0.00 0.00 3.55
3540 3845 0.320771 CCGATTGAGCCTTATCCCCG 60.321 60.000 0.00 0.00 0.00 5.73
3690 3995 4.022329 GTCACATTTTCCACAAGGGGTAAG 60.022 45.833 0.00 0.00 37.22 2.34
3749 4054 2.034687 CCTCAGGGGCCACACTTG 59.965 66.667 8.31 0.00 0.00 3.16
3786 4091 1.066605 GCCATTGCTTCATGCGAATCT 59.933 47.619 0.00 0.00 46.63 2.40
3787 4092 1.484356 GCCATTGCTTCATGCGAATC 58.516 50.000 0.00 0.00 46.63 2.52
3948 4253 6.202188 TGAACGTATTTCTCACTTCTTTGTCC 59.798 38.462 0.00 0.00 34.97 4.02
3960 4265 7.625553 CCATGAATCTTCTGAACGTATTTCTC 58.374 38.462 0.00 0.00 34.97 2.87
4125 4430 3.627395 TGAGACAACATAGGCGGAATT 57.373 42.857 0.00 0.00 0.00 2.17
4126 4431 3.270877 GTTGAGACAACATAGGCGGAAT 58.729 45.455 9.32 0.00 0.00 3.01
4127 4432 2.037902 TGTTGAGACAACATAGGCGGAA 59.962 45.455 12.32 0.00 31.49 4.30
4128 4433 1.621317 TGTTGAGACAACATAGGCGGA 59.379 47.619 12.32 0.00 31.49 5.54
4129 4434 1.732259 GTGTTGAGACAACATAGGCGG 59.268 52.381 17.91 0.00 37.57 6.13
4130 4435 2.412870 TGTGTTGAGACAACATAGGCG 58.587 47.619 17.91 0.00 37.57 5.52
4131 4436 2.160417 GCTGTGTTGAGACAACATAGGC 59.840 50.000 28.27 22.06 39.03 3.93
4132 4437 2.744202 GGCTGTGTTGAGACAACATAGG 59.256 50.000 28.27 18.48 39.03 2.57
4133 4438 2.413112 CGGCTGTGTTGAGACAACATAG 59.587 50.000 25.51 25.51 40.77 2.23
4134 4439 2.412870 CGGCTGTGTTGAGACAACATA 58.587 47.619 17.91 14.80 37.57 2.29
4135 4440 1.229428 CGGCTGTGTTGAGACAACAT 58.771 50.000 17.91 0.00 37.57 2.71
4136 4441 0.813610 CCGGCTGTGTTGAGACAACA 60.814 55.000 12.32 12.32 37.57 3.33
4137 4442 0.814010 ACCGGCTGTGTTGAGACAAC 60.814 55.000 0.00 7.55 37.57 3.32
4138 4443 0.531974 GACCGGCTGTGTTGAGACAA 60.532 55.000 0.00 0.00 37.57 3.18
4139 4444 1.069090 GACCGGCTGTGTTGAGACA 59.931 57.895 0.00 0.00 0.00 3.41
4140 4445 1.668151 GGACCGGCTGTGTTGAGAC 60.668 63.158 0.00 0.00 0.00 3.36
4141 4446 2.741092 GGACCGGCTGTGTTGAGA 59.259 61.111 0.00 0.00 0.00 3.27
4142 4447 2.358737 GGGACCGGCTGTGTTGAG 60.359 66.667 0.00 0.00 0.00 3.02
4143 4448 2.674563 CTTGGGACCGGCTGTGTTGA 62.675 60.000 0.00 0.00 0.00 3.18
4144 4449 2.203280 TTGGGACCGGCTGTGTTG 60.203 61.111 0.00 0.00 0.00 3.33
4145 4450 2.113139 CTTGGGACCGGCTGTGTT 59.887 61.111 0.00 0.00 0.00 3.32
4146 4451 3.168528 ACTTGGGACCGGCTGTGT 61.169 61.111 0.00 0.00 0.00 3.72
4147 4452 2.358737 GACTTGGGACCGGCTGTG 60.359 66.667 0.00 0.00 0.00 3.66
4148 4453 3.637273 GGACTTGGGACCGGCTGT 61.637 66.667 0.00 0.00 0.00 4.40
4149 4454 4.760047 CGGACTTGGGACCGGCTG 62.760 72.222 0.00 0.00 44.48 4.85
4158 4463 0.252197 CCTCCTTTACCCGGACTTGG 59.748 60.000 0.73 0.00 0.00 3.61
4159 4464 1.207329 CTCCTCCTTTACCCGGACTTG 59.793 57.143 0.73 0.00 0.00 3.16
4160 4465 1.569653 CTCCTCCTTTACCCGGACTT 58.430 55.000 0.73 0.00 0.00 3.01
4161 4466 0.325390 CCTCCTCCTTTACCCGGACT 60.325 60.000 0.73 0.00 0.00 3.85
4162 4467 1.335882 CCCTCCTCCTTTACCCGGAC 61.336 65.000 0.73 0.00 0.00 4.79
4163 4468 1.002533 CCCTCCTCCTTTACCCGGA 59.997 63.158 0.73 0.00 0.00 5.14
4164 4469 0.912968 AACCCTCCTCCTTTACCCGG 60.913 60.000 0.00 0.00 0.00 5.73
4165 4470 0.252197 CAACCCTCCTCCTTTACCCG 59.748 60.000 0.00 0.00 0.00 5.28
4166 4471 1.004394 CACAACCCTCCTCCTTTACCC 59.996 57.143 0.00 0.00 0.00 3.69
4167 4472 1.982958 TCACAACCCTCCTCCTTTACC 59.017 52.381 0.00 0.00 0.00 2.85
4168 4473 4.141688 CCTATCACAACCCTCCTCCTTTAC 60.142 50.000 0.00 0.00 0.00 2.01
4169 4474 4.037927 CCTATCACAACCCTCCTCCTTTA 58.962 47.826 0.00 0.00 0.00 1.85
4170 4475 2.846827 CCTATCACAACCCTCCTCCTTT 59.153 50.000 0.00 0.00 0.00 3.11
4171 4476 2.482494 CCTATCACAACCCTCCTCCTT 58.518 52.381 0.00 0.00 0.00 3.36
4172 4477 1.972207 GCCTATCACAACCCTCCTCCT 60.972 57.143 0.00 0.00 0.00 3.69
4173 4478 0.470341 GCCTATCACAACCCTCCTCC 59.530 60.000 0.00 0.00 0.00 4.30
4174 4479 1.501582 AGCCTATCACAACCCTCCTC 58.498 55.000 0.00 0.00 0.00 3.71
4175 4480 1.972588 AAGCCTATCACAACCCTCCT 58.027 50.000 0.00 0.00 0.00 3.69
4176 4481 2.808906 AAAGCCTATCACAACCCTCC 57.191 50.000 0.00 0.00 0.00 4.30
4177 4482 2.678336 CGAAAAGCCTATCACAACCCTC 59.322 50.000 0.00 0.00 0.00 4.30
4178 4483 2.304761 TCGAAAAGCCTATCACAACCCT 59.695 45.455 0.00 0.00 0.00 4.34
4179 4484 2.678336 CTCGAAAAGCCTATCACAACCC 59.322 50.000 0.00 0.00 0.00 4.11
4180 4485 2.096013 GCTCGAAAAGCCTATCACAACC 59.904 50.000 0.00 0.00 45.92 3.77
4181 4486 3.391227 GCTCGAAAAGCCTATCACAAC 57.609 47.619 0.00 0.00 45.92 3.32
4192 4497 2.971261 GCTTTTACGTTGGCTCGAAAAG 59.029 45.455 20.19 20.19 38.81 2.27
4193 4498 2.614983 AGCTTTTACGTTGGCTCGAAAA 59.385 40.909 0.00 0.00 34.70 2.29
4194 4499 2.215196 AGCTTTTACGTTGGCTCGAAA 58.785 42.857 0.00 0.00 34.70 3.46
4195 4500 1.796459 GAGCTTTTACGTTGGCTCGAA 59.204 47.619 13.05 0.00 41.03 3.71
4196 4501 1.425412 GAGCTTTTACGTTGGCTCGA 58.575 50.000 13.05 0.00 41.03 4.04
4197 4502 3.949313 GAGCTTTTACGTTGGCTCG 57.051 52.632 13.05 1.70 41.03 5.03
4199 4504 0.875059 GCTGAGCTTTTACGTTGGCT 59.125 50.000 0.00 0.00 37.77 4.75
4200 4505 0.109735 GGCTGAGCTTTTACGTTGGC 60.110 55.000 3.72 0.00 0.00 4.52
4201 4506 1.069227 GTGGCTGAGCTTTTACGTTGG 60.069 52.381 3.72 0.00 0.00 3.77
4202 4507 1.873591 AGTGGCTGAGCTTTTACGTTG 59.126 47.619 3.72 0.00 0.00 4.10
4203 4508 2.143925 GAGTGGCTGAGCTTTTACGTT 58.856 47.619 3.72 0.00 0.00 3.99
4204 4509 1.344763 AGAGTGGCTGAGCTTTTACGT 59.655 47.619 3.72 0.00 0.00 3.57
4205 4510 2.086054 AGAGTGGCTGAGCTTTTACG 57.914 50.000 3.72 0.00 0.00 3.18
4206 4511 4.333926 CCATAAGAGTGGCTGAGCTTTTAC 59.666 45.833 3.72 0.00 31.43 2.01
4207 4512 4.225042 TCCATAAGAGTGGCTGAGCTTTTA 59.775 41.667 3.72 0.00 39.19 1.52
4208 4513 3.009473 TCCATAAGAGTGGCTGAGCTTTT 59.991 43.478 3.72 0.00 39.19 2.27
4209 4514 2.573462 TCCATAAGAGTGGCTGAGCTTT 59.427 45.455 3.72 0.00 39.19 3.51
4210 4515 2.170187 CTCCATAAGAGTGGCTGAGCTT 59.830 50.000 3.72 0.00 39.19 3.74
4211 4516 1.761784 CTCCATAAGAGTGGCTGAGCT 59.238 52.381 3.72 0.00 39.19 4.09
4212 4517 1.759445 TCTCCATAAGAGTGGCTGAGC 59.241 52.381 0.00 0.00 43.71 4.26
4213 4518 3.640498 TCATCTCCATAAGAGTGGCTGAG 59.360 47.826 0.00 0.00 43.71 3.35
4214 4519 3.646534 TCATCTCCATAAGAGTGGCTGA 58.353 45.455 0.00 0.00 43.71 4.26
4215 4520 4.412796 TTCATCTCCATAAGAGTGGCTG 57.587 45.455 0.00 0.00 43.71 4.85
4216 4521 4.384647 GGTTTCATCTCCATAAGAGTGGCT 60.385 45.833 0.00 0.00 43.71 4.75
4217 4522 3.879892 GGTTTCATCTCCATAAGAGTGGC 59.120 47.826 0.00 0.00 43.71 5.01
4218 4523 4.080356 TGGGTTTCATCTCCATAAGAGTGG 60.080 45.833 0.00 0.00 43.71 4.00
4219 4524 5.102953 TGGGTTTCATCTCCATAAGAGTG 57.897 43.478 0.00 0.00 43.71 3.51
4220 4525 5.779241 TTGGGTTTCATCTCCATAAGAGT 57.221 39.130 0.00 0.00 43.71 3.24
4221 4526 6.886459 TCTTTTGGGTTTCATCTCCATAAGAG 59.114 38.462 9.33 0.00 40.80 2.85
4222 4527 6.789268 TCTTTTGGGTTTCATCTCCATAAGA 58.211 36.000 9.33 9.33 42.22 2.10
4223 4528 7.340232 TGATCTTTTGGGTTTCATCTCCATAAG 59.660 37.037 0.00 0.00 39.39 1.73
4224 4529 7.122650 GTGATCTTTTGGGTTTCATCTCCATAA 59.877 37.037 0.00 0.00 0.00 1.90
4225 4530 6.603201 GTGATCTTTTGGGTTTCATCTCCATA 59.397 38.462 0.00 0.00 0.00 2.74
4226 4531 5.420104 GTGATCTTTTGGGTTTCATCTCCAT 59.580 40.000 0.00 0.00 0.00 3.41
4227 4532 4.766891 GTGATCTTTTGGGTTTCATCTCCA 59.233 41.667 0.00 0.00 0.00 3.86
4228 4533 4.158579 GGTGATCTTTTGGGTTTCATCTCC 59.841 45.833 0.00 0.00 0.00 3.71
4229 4534 5.012893 AGGTGATCTTTTGGGTTTCATCTC 58.987 41.667 0.00 0.00 0.00 2.75
4230 4535 5.003096 AGGTGATCTTTTGGGTTTCATCT 57.997 39.130 0.00 0.00 0.00 2.90
4231 4536 5.012893 AGAGGTGATCTTTTGGGTTTCATC 58.987 41.667 0.00 0.00 32.99 2.92
4232 4537 5.003096 AGAGGTGATCTTTTGGGTTTCAT 57.997 39.130 0.00 0.00 32.99 2.57
4233 4538 4.453480 AGAGGTGATCTTTTGGGTTTCA 57.547 40.909 0.00 0.00 32.99 2.69
4234 4539 4.396478 GCTAGAGGTGATCTTTTGGGTTTC 59.604 45.833 0.00 0.00 39.64 2.78
4235 4540 4.336280 GCTAGAGGTGATCTTTTGGGTTT 58.664 43.478 0.00 0.00 39.64 3.27
4236 4541 3.308473 GGCTAGAGGTGATCTTTTGGGTT 60.308 47.826 0.00 0.00 39.64 4.11
4237 4542 2.239907 GGCTAGAGGTGATCTTTTGGGT 59.760 50.000 0.00 0.00 39.64 4.51
4238 4543 2.507471 AGGCTAGAGGTGATCTTTTGGG 59.493 50.000 0.00 0.00 39.64 4.12
4239 4544 3.922171 AGGCTAGAGGTGATCTTTTGG 57.078 47.619 0.00 0.00 39.64 3.28
4240 4545 4.443598 GGGTAGGCTAGAGGTGATCTTTTG 60.444 50.000 0.00 0.00 39.64 2.44
4241 4546 3.712218 GGGTAGGCTAGAGGTGATCTTTT 59.288 47.826 0.00 0.00 39.64 2.27
4242 4547 3.310193 GGGTAGGCTAGAGGTGATCTTT 58.690 50.000 0.00 0.00 39.64 2.52
4243 4548 2.426561 GGGGTAGGCTAGAGGTGATCTT 60.427 54.545 0.00 0.00 39.64 2.40
4244 4549 1.148236 GGGGTAGGCTAGAGGTGATCT 59.852 57.143 0.00 0.00 42.47 2.75
4245 4550 1.133136 TGGGGTAGGCTAGAGGTGATC 60.133 57.143 0.00 0.00 0.00 2.92
4246 4551 0.941963 TGGGGTAGGCTAGAGGTGAT 59.058 55.000 0.00 0.00 0.00 3.06
4247 4552 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.000 0.00 0.00 0.00 4.02
4248 4553 0.831307 GTTGGGGTAGGCTAGAGGTG 59.169 60.000 0.00 0.00 0.00 4.00
4249 4554 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85
4250 4555 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
4251 4556 2.188817 ACAAGTTGGGGTAGGCTAGAG 58.811 52.381 7.96 0.00 0.00 2.43
4252 4557 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
4253 4558 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
4254 4559 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
4255 4560 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
4264 4569 2.741553 GCCTTTGGTCCCAAACAAGTTG 60.742 50.000 7.40 0.00 40.51 3.16
4265 4570 1.484653 GCCTTTGGTCCCAAACAAGTT 59.515 47.619 7.40 0.00 40.51 2.66
4266 4571 1.119684 GCCTTTGGTCCCAAACAAGT 58.880 50.000 7.40 0.00 40.51 3.16
4267 4572 1.413118 AGCCTTTGGTCCCAAACAAG 58.587 50.000 7.40 0.00 40.51 3.16
4268 4573 1.872773 AAGCCTTTGGTCCCAAACAA 58.127 45.000 7.40 0.00 40.51 2.83
4269 4574 1.484240 CAAAGCCTTTGGTCCCAAACA 59.516 47.619 9.37 0.00 40.51 2.83
4270 4575 1.484653 ACAAAGCCTTTGGTCCCAAAC 59.515 47.619 20.55 0.00 44.81 2.93
4271 4576 1.872773 ACAAAGCCTTTGGTCCCAAA 58.127 45.000 20.55 10.87 44.81 3.28
4272 4577 1.484240 CAACAAAGCCTTTGGTCCCAA 59.516 47.619 20.55 0.00 44.81 4.12
4273 4578 1.118838 CAACAAAGCCTTTGGTCCCA 58.881 50.000 20.55 0.00 44.81 4.37
4274 4579 1.119684 ACAACAAAGCCTTTGGTCCC 58.880 50.000 20.55 0.00 44.81 4.46
4275 4580 2.093711 ACAACAACAAAGCCTTTGGTCC 60.094 45.455 20.55 0.00 44.81 4.46
4276 4581 3.245518 ACAACAACAAAGCCTTTGGTC 57.754 42.857 20.55 0.00 44.81 4.02
4277 4582 3.244387 ACAACAACAACAAAGCCTTTGGT 60.244 39.130 20.55 12.23 44.81 3.67
4278 4583 3.333804 ACAACAACAACAAAGCCTTTGG 58.666 40.909 20.55 6.98 44.81 3.28
4279 4584 4.213059 ACAACAACAACAACAAAGCCTTTG 59.787 37.500 15.47 15.47 45.95 2.77
4280 4585 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
4281 4586 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
4282 4587 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
4283 4588 3.993736 AGAACAACAACAACAACAAAGCC 59.006 39.130 0.00 0.00 0.00 4.35
4284 4589 4.201485 CGAGAACAACAACAACAACAAAGC 60.201 41.667 0.00 0.00 0.00 3.51
4285 4590 4.915085 ACGAGAACAACAACAACAACAAAG 59.085 37.500 0.00 0.00 0.00 2.77
4286 4591 4.861210 ACGAGAACAACAACAACAACAAA 58.139 34.783 0.00 0.00 0.00 2.83
4287 4592 4.491234 ACGAGAACAACAACAACAACAA 57.509 36.364 0.00 0.00 0.00 2.83
4288 4593 4.023963 TCAACGAGAACAACAACAACAACA 60.024 37.500 0.00 0.00 0.00 3.33
4289 4594 4.468643 TCAACGAGAACAACAACAACAAC 58.531 39.130 0.00 0.00 0.00 3.32
4290 4595 4.750952 TCAACGAGAACAACAACAACAA 57.249 36.364 0.00 0.00 0.00 2.83
4291 4596 4.750952 TTCAACGAGAACAACAACAACA 57.249 36.364 0.00 0.00 0.00 3.33
4292 4597 4.499040 CCATTCAACGAGAACAACAACAAC 59.501 41.667 0.00 0.00 39.49 3.32
4293 4598 4.439426 CCCATTCAACGAGAACAACAACAA 60.439 41.667 0.00 0.00 39.49 2.83
4294 4599 3.066064 CCCATTCAACGAGAACAACAACA 59.934 43.478 0.00 0.00 39.49 3.33
4295 4600 3.314080 TCCCATTCAACGAGAACAACAAC 59.686 43.478 0.00 0.00 39.49 3.32
4296 4601 3.546724 TCCCATTCAACGAGAACAACAA 58.453 40.909 0.00 0.00 39.49 2.83
4297 4602 3.201353 TCCCATTCAACGAGAACAACA 57.799 42.857 0.00 0.00 39.49 3.33
4298 4603 4.274950 TCTTTCCCATTCAACGAGAACAAC 59.725 41.667 0.00 0.00 39.49 3.32
4299 4604 4.456535 TCTTTCCCATTCAACGAGAACAA 58.543 39.130 0.00 0.00 39.49 2.83
4300 4605 4.079980 TCTTTCCCATTCAACGAGAACA 57.920 40.909 0.00 0.00 39.49 3.18
4301 4606 4.755123 TCTTCTTTCCCATTCAACGAGAAC 59.245 41.667 0.00 0.00 39.49 3.01
4302 4607 4.968259 TCTTCTTTCCCATTCAACGAGAA 58.032 39.130 0.00 0.00 41.28 2.87
4303 4608 4.617253 TCTTCTTTCCCATTCAACGAGA 57.383 40.909 0.00 0.00 0.00 4.04
4304 4609 4.095483 CCATCTTCTTTCCCATTCAACGAG 59.905 45.833 0.00 0.00 0.00 4.18
4305 4610 4.009675 CCATCTTCTTTCCCATTCAACGA 58.990 43.478 0.00 0.00 0.00 3.85
4306 4611 3.428045 GCCATCTTCTTTCCCATTCAACG 60.428 47.826 0.00 0.00 0.00 4.10
4307 4612 3.766051 AGCCATCTTCTTTCCCATTCAAC 59.234 43.478 0.00 0.00 0.00 3.18
4308 4613 3.765511 CAGCCATCTTCTTTCCCATTCAA 59.234 43.478 0.00 0.00 0.00 2.69
4309 4614 3.245371 ACAGCCATCTTCTTTCCCATTCA 60.245 43.478 0.00 0.00 0.00 2.57
4310 4615 3.129988 CACAGCCATCTTCTTTCCCATTC 59.870 47.826 0.00 0.00 0.00 2.67
4311 4616 3.094572 CACAGCCATCTTCTTTCCCATT 58.905 45.455 0.00 0.00 0.00 3.16
4312 4617 2.042162 ACACAGCCATCTTCTTTCCCAT 59.958 45.455 0.00 0.00 0.00 4.00
4313 4618 1.425066 ACACAGCCATCTTCTTTCCCA 59.575 47.619 0.00 0.00 0.00 4.37
4314 4619 2.206576 ACACAGCCATCTTCTTTCCC 57.793 50.000 0.00 0.00 0.00 3.97
4315 4620 5.904362 ATTTACACAGCCATCTTCTTTCC 57.096 39.130 0.00 0.00 0.00 3.13
4316 4621 6.913170 TCAATTTACACAGCCATCTTCTTTC 58.087 36.000 0.00 0.00 0.00 2.62
4317 4622 6.899393 TCAATTTACACAGCCATCTTCTTT 57.101 33.333 0.00 0.00 0.00 2.52
4436 4741 6.716934 ACCTTCTCTTTTTCCTTTTCCTTC 57.283 37.500 0.00 0.00 0.00 3.46
4514 4819 1.215173 TCCGGACGGAGGGAGTATAAA 59.785 52.381 9.76 0.00 39.76 1.40
4518 4823 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
4519 4824 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
4520 4825 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
4521 4826 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
4522 4827 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4523 4828 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4524 4829 2.667473 ACAAGTATTTCCGGACGGAG 57.333 50.000 13.64 3.15 46.06 4.63
4525 4830 2.613474 CCAACAAGTATTTCCGGACGGA 60.613 50.000 1.83 9.76 43.52 4.69
4526 4831 1.735571 CCAACAAGTATTTCCGGACGG 59.264 52.381 1.83 3.96 0.00 4.79
4527 4832 2.671396 CTCCAACAAGTATTTCCGGACG 59.329 50.000 1.83 0.00 0.00 4.79
4528 4833 3.007635 CCTCCAACAAGTATTTCCGGAC 58.992 50.000 1.83 0.00 0.00 4.79
4529 4834 2.907696 TCCTCCAACAAGTATTTCCGGA 59.092 45.455 0.00 0.00 0.00 5.14
4530 4835 3.343941 TCCTCCAACAAGTATTTCCGG 57.656 47.619 0.00 0.00 0.00 5.14
4531 4836 4.438744 GCATTCCTCCAACAAGTATTTCCG 60.439 45.833 0.00 0.00 0.00 4.30
4532 4837 4.462483 TGCATTCCTCCAACAAGTATTTCC 59.538 41.667 0.00 0.00 0.00 3.13
4533 4838 5.643379 TGCATTCCTCCAACAAGTATTTC 57.357 39.130 0.00 0.00 0.00 2.17
4534 4839 7.716799 TTATGCATTCCTCCAACAAGTATTT 57.283 32.000 3.54 0.00 0.00 1.40
4535 4840 7.716799 TTTATGCATTCCTCCAACAAGTATT 57.283 32.000 3.54 0.00 0.00 1.89
4536 4841 7.716799 TTTTATGCATTCCTCCAACAAGTAT 57.283 32.000 3.54 0.00 0.00 2.12
4537 4842 7.531857 TTTTTATGCATTCCTCCAACAAGTA 57.468 32.000 3.54 0.00 0.00 2.24
4538 4843 6.418057 TTTTTATGCATTCCTCCAACAAGT 57.582 33.333 3.54 0.00 0.00 3.16
4539 4844 6.314400 CCATTTTTATGCATTCCTCCAACAAG 59.686 38.462 3.54 0.00 0.00 3.16
4540 4845 6.013898 TCCATTTTTATGCATTCCTCCAACAA 60.014 34.615 3.54 0.00 0.00 2.83
4541 4846 5.483231 TCCATTTTTATGCATTCCTCCAACA 59.517 36.000 3.54 0.00 0.00 3.33
4542 4847 5.976458 TCCATTTTTATGCATTCCTCCAAC 58.024 37.500 3.54 0.00 0.00 3.77
4543 4848 6.156602 ACATCCATTTTTATGCATTCCTCCAA 59.843 34.615 3.54 0.00 0.00 3.53
4544 4849 5.662208 ACATCCATTTTTATGCATTCCTCCA 59.338 36.000 3.54 0.00 0.00 3.86
4545 4850 6.165700 ACATCCATTTTTATGCATTCCTCC 57.834 37.500 3.54 0.00 0.00 4.30
4546 4851 8.800332 AGATACATCCATTTTTATGCATTCCTC 58.200 33.333 3.54 0.00 0.00 3.71
4547 4852 8.716674 AGATACATCCATTTTTATGCATTCCT 57.283 30.769 3.54 0.00 0.00 3.36
4552 4857 9.851686 AGTTCTAGATACATCCATTTTTATGCA 57.148 29.630 0.00 0.00 0.00 3.96
4579 4884 8.871125 AGGAATGGATGTATCTAGACGTATTTT 58.129 33.333 0.00 0.00 0.00 1.82
4580 4885 8.423906 AGGAATGGATGTATCTAGACGTATTT 57.576 34.615 0.00 0.00 0.00 1.40
4581 4886 7.122948 GGAGGAATGGATGTATCTAGACGTATT 59.877 40.741 0.00 0.00 0.00 1.89
4582 4887 6.603997 GGAGGAATGGATGTATCTAGACGTAT 59.396 42.308 0.00 0.00 0.00 3.06
4583 4888 5.944599 GGAGGAATGGATGTATCTAGACGTA 59.055 44.000 0.00 0.00 0.00 3.57
4584 4889 4.767928 GGAGGAATGGATGTATCTAGACGT 59.232 45.833 0.00 0.00 0.00 4.34
4585 4890 4.142578 CGGAGGAATGGATGTATCTAGACG 60.143 50.000 0.00 0.00 0.00 4.18
4586 4891 5.010933 TCGGAGGAATGGATGTATCTAGAC 58.989 45.833 0.00 0.00 0.00 2.59
4587 4892 5.010933 GTCGGAGGAATGGATGTATCTAGA 58.989 45.833 0.00 0.00 0.00 2.43
4588 4893 4.142578 CGTCGGAGGAATGGATGTATCTAG 60.143 50.000 0.00 0.00 0.00 2.43
4589 4894 3.756963 CGTCGGAGGAATGGATGTATCTA 59.243 47.826 0.00 0.00 0.00 1.98
4590 4895 2.558795 CGTCGGAGGAATGGATGTATCT 59.441 50.000 0.00 0.00 0.00 1.98
4591 4896 2.557056 TCGTCGGAGGAATGGATGTATC 59.443 50.000 0.00 0.00 0.00 2.24
4592 4897 2.296471 GTCGTCGGAGGAATGGATGTAT 59.704 50.000 1.41 0.00 0.00 2.29
4593 4898 1.679680 GTCGTCGGAGGAATGGATGTA 59.320 52.381 1.41 0.00 0.00 2.29
4594 4899 0.460311 GTCGTCGGAGGAATGGATGT 59.540 55.000 1.41 0.00 0.00 3.06
4595 4900 0.459899 TGTCGTCGGAGGAATGGATG 59.540 55.000 1.41 0.00 0.00 3.51
4596 4901 1.137086 CTTGTCGTCGGAGGAATGGAT 59.863 52.381 1.41 0.00 0.00 3.41
4597 4902 0.530744 CTTGTCGTCGGAGGAATGGA 59.469 55.000 1.41 0.00 0.00 3.41
4598 4903 0.246635 ACTTGTCGTCGGAGGAATGG 59.753 55.000 1.41 0.00 0.00 3.16
4599 4904 2.933495 TACTTGTCGTCGGAGGAATG 57.067 50.000 1.41 0.00 0.00 2.67
4600 4905 4.430908 GAAATACTTGTCGTCGGAGGAAT 58.569 43.478 1.41 0.00 0.00 3.01
4601 4906 3.367703 GGAAATACTTGTCGTCGGAGGAA 60.368 47.826 1.41 0.00 0.00 3.36
4602 4907 2.165030 GGAAATACTTGTCGTCGGAGGA 59.835 50.000 0.00 0.00 0.00 3.71
4603 4908 2.537401 GGAAATACTTGTCGTCGGAGG 58.463 52.381 0.00 0.00 0.00 4.30
4604 4909 2.182825 CGGAAATACTTGTCGTCGGAG 58.817 52.381 0.00 0.00 0.00 4.63
4605 4910 1.135315 CCGGAAATACTTGTCGTCGGA 60.135 52.381 0.00 0.00 38.64 4.55
4606 4911 1.135315 TCCGGAAATACTTGTCGTCGG 60.135 52.381 0.00 0.00 37.82 4.79
4607 4912 1.916000 GTCCGGAAATACTTGTCGTCG 59.084 52.381 5.23 0.00 0.00 5.12
4608 4913 1.916000 CGTCCGGAAATACTTGTCGTC 59.084 52.381 5.23 0.00 0.00 4.20
4609 4914 1.403249 CCGTCCGGAAATACTTGTCGT 60.403 52.381 5.23 0.00 37.50 4.34
4610 4915 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
4611 4916 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4612 4917 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4613 4918 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4614 4919 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4615 4920 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4616 4921 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4617 4922 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
4618 4923 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
4619 4924 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
4620 4925 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
4621 4926 1.856539 AAGTACTCCCTCCGTCCGGA 61.857 60.000 0.00 0.00 42.90 5.14
4622 4927 1.379576 AAGTACTCCCTCCGTCCGG 60.380 63.158 0.00 0.00 0.00 5.14
4623 4928 1.664321 CCAAGTACTCCCTCCGTCCG 61.664 65.000 0.00 0.00 0.00 4.79
4624 4929 0.614134 ACCAAGTACTCCCTCCGTCC 60.614 60.000 0.00 0.00 0.00 4.79
4625 4930 1.067071 CAACCAAGTACTCCCTCCGTC 60.067 57.143 0.00 0.00 0.00 4.79
4626 4931 0.974383 CAACCAAGTACTCCCTCCGT 59.026 55.000 0.00 0.00 0.00 4.69
4627 4932 0.391263 GCAACCAAGTACTCCCTCCG 60.391 60.000 0.00 0.00 0.00 4.63
4628 4933 0.690762 TGCAACCAAGTACTCCCTCC 59.309 55.000 0.00 0.00 0.00 4.30
4629 4934 1.071699 TGTGCAACCAAGTACTCCCTC 59.928 52.381 0.00 0.00 34.36 4.30
4630 4935 1.136828 TGTGCAACCAAGTACTCCCT 58.863 50.000 0.00 0.00 34.36 4.20
4631 4936 1.812571 CATGTGCAACCAAGTACTCCC 59.187 52.381 0.00 0.00 34.36 4.30
4632 4937 2.778299 TCATGTGCAACCAAGTACTCC 58.222 47.619 0.00 0.00 34.36 3.85
4633 4938 4.726416 CATTCATGTGCAACCAAGTACTC 58.274 43.478 0.00 0.00 34.36 2.59
4634 4939 3.057315 GCATTCATGTGCAACCAAGTACT 60.057 43.478 3.55 0.00 44.43 2.73
4635 4940 3.244976 GCATTCATGTGCAACCAAGTAC 58.755 45.455 3.55 0.00 44.43 2.73
4660 4965 3.262420 CAACAGTATCACCAGGTAGTGC 58.738 50.000 0.00 0.00 37.68 4.40
4666 4971 2.783135 ACTTGCAACAGTATCACCAGG 58.217 47.619 0.00 0.00 0.00 4.45
4725 5031 1.768870 AGCACTATATTCGGGGCAACT 59.231 47.619 0.00 0.00 0.00 3.16
4774 5080 4.699925 TCTTATATTTTGGGACGGAGGG 57.300 45.455 0.00 0.00 0.00 4.30
4775 5081 4.510340 CGTTCTTATATTTTGGGACGGAGG 59.490 45.833 0.00 0.00 0.00 4.30
4776 5082 5.114081 ACGTTCTTATATTTTGGGACGGAG 58.886 41.667 0.00 0.00 0.00 4.63
4777 5083 5.088680 ACGTTCTTATATTTTGGGACGGA 57.911 39.130 0.00 0.00 0.00 4.69
4778 5084 5.806366 AACGTTCTTATATTTTGGGACGG 57.194 39.130 0.00 0.00 0.00 4.79
4779 5085 9.609950 TTAAAAACGTTCTTATATTTTGGGACG 57.390 29.630 0.00 0.00 0.00 4.79
4791 5097 9.480053 ACTATGCTAGTGTTAAAAACGTTCTTA 57.520 29.630 0.00 0.00 37.69 2.10
4792 5098 8.374327 ACTATGCTAGTGTTAAAAACGTTCTT 57.626 30.769 0.00 0.00 37.69 2.52
4793 5099 7.958053 ACTATGCTAGTGTTAAAAACGTTCT 57.042 32.000 0.00 0.00 37.69 3.01
4815 5121 9.326413 CCCAGAATATAAGAACGATTTTACACT 57.674 33.333 0.00 0.00 0.00 3.55
4816 5122 9.321562 TCCCAGAATATAAGAACGATTTTACAC 57.678 33.333 0.00 0.00 0.00 2.90
4817 5123 9.321562 GTCCCAGAATATAAGAACGATTTTACA 57.678 33.333 0.00 0.00 0.00 2.41
4818 5124 9.321562 TGTCCCAGAATATAAGAACGATTTTAC 57.678 33.333 0.00 0.00 0.00 2.01
4819 5125 9.542462 CTGTCCCAGAATATAAGAACGATTTTA 57.458 33.333 0.00 0.00 32.44 1.52
4820 5126 8.265055 TCTGTCCCAGAATATAAGAACGATTTT 58.735 33.333 0.00 0.00 37.57 1.82
4821 5127 7.792032 TCTGTCCCAGAATATAAGAACGATTT 58.208 34.615 0.00 0.00 37.57 2.17
4822 5128 7.361457 TCTGTCCCAGAATATAAGAACGATT 57.639 36.000 0.00 0.00 37.57 3.34
4823 5129 6.978674 TCTGTCCCAGAATATAAGAACGAT 57.021 37.500 0.00 0.00 37.57 3.73
4824 5130 6.785337 TTCTGTCCCAGAATATAAGAACGA 57.215 37.500 2.65 0.00 44.27 3.85
4835 5141 3.544698 AGTACTCCTTCTGTCCCAGAA 57.455 47.619 6.51 6.51 46.50 3.02
4836 5142 3.432378 GAAGTACTCCTTCTGTCCCAGA 58.568 50.000 0.00 0.00 45.19 3.86
4837 5143 3.878160 GAAGTACTCCTTCTGTCCCAG 57.122 52.381 0.00 0.00 45.19 4.45
4977 5308 2.524306 CCCATTTGGCCAACTGAAGTA 58.476 47.619 31.36 11.59 0.00 2.24
5058 5389 3.157087 CCCTTTAGAACACACCTGCATT 58.843 45.455 0.00 0.00 0.00 3.56
5067 5398 3.421844 AGATGGTTGCCCTTTAGAACAC 58.578 45.455 0.00 0.00 0.00 3.32
5109 5440 1.231221 TGTGTGCGGTGTGGAAATAC 58.769 50.000 0.00 0.00 0.00 1.89
5122 5454 9.326413 AGTAAATCAAGGTATAAGTATGTGTGC 57.674 33.333 0.00 0.00 0.00 4.57
5137 5469 5.648092 CCTCCTGGTTAACAGTAAATCAAGG 59.352 44.000 8.10 0.58 46.06 3.61
5140 5472 6.235664 GTTCCTCCTGGTTAACAGTAAATCA 58.764 40.000 8.10 0.00 46.06 2.57
5154 5488 2.711922 CCGGTCTCGTTCCTCCTGG 61.712 68.421 0.00 0.00 33.95 4.45
5226 5560 1.649664 CTGATTGAACTGCTAGCGCT 58.350 50.000 17.26 17.26 36.97 5.92
5494 5840 6.588719 ACATAAGCAAAAACTGGCAGATAA 57.411 33.333 23.66 0.00 0.00 1.75
5495 5841 6.588719 AACATAAGCAAAAACTGGCAGATA 57.411 33.333 23.66 0.00 0.00 1.98
5536 5883 3.306364 GCATGTGACCTCAGAACACTACT 60.306 47.826 0.00 0.00 35.83 2.57
5566 5926 1.817941 AGCCACGCACGAACAAACT 60.818 52.632 0.00 0.00 0.00 2.66
5567 5927 1.654137 CAGCCACGCACGAACAAAC 60.654 57.895 0.00 0.00 0.00 2.93
5568 5928 2.712539 CAGCCACGCACGAACAAA 59.287 55.556 0.00 0.00 0.00 2.83
5569 5929 3.947841 GCAGCCACGCACGAACAA 61.948 61.111 0.00 0.00 0.00 2.83
5570 5930 4.908687 AGCAGCCACGCACGAACA 62.909 61.111 0.00 0.00 0.00 3.18
5583 5943 0.108804 CACGTGTAGGTACCCAGCAG 60.109 60.000 8.74 0.17 0.00 4.24
5623 5983 1.671742 CTGCCTAGTGTGTTCGGGT 59.328 57.895 0.00 0.00 0.00 5.28
5789 6150 1.739049 CCACGCCTTTTGCTCCAAA 59.261 52.632 0.00 0.00 38.05 3.28
5794 6156 2.335712 GCTAGCCACGCCTTTTGCT 61.336 57.895 2.29 0.00 38.05 3.91
5810 6172 1.153289 GACACCATGGATCGCTGCT 60.153 57.895 21.47 0.00 0.00 4.24
5815 6177 1.068083 CCGAGGACACCATGGATCG 59.932 63.158 21.47 17.74 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.