Multiple sequence alignment - TraesCS2B01G415300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G415300 chr2B 100.000 5259 0 0 1 5259 593662547 593657289 0.000000e+00 9712.0
1 TraesCS2B01G415300 chr2B 95.276 254 11 1 1 253 475125137 475124884 8.200000e-108 401.0
2 TraesCS2B01G415300 chr2B 95.951 247 8 2 1 246 452910426 452910181 2.950000e-107 399.0
3 TraesCS2B01G415300 chr2D 95.036 4432 137 39 288 4677 506151569 506147179 0.000000e+00 6889.0
4 TraesCS2B01G415300 chr2D 88.493 617 19 19 4679 5259 506147106 506146506 0.000000e+00 699.0
5 TraesCS2B01G415300 chr2D 96.341 246 9 0 1 246 571067410 571067165 6.340000e-109 405.0
6 TraesCS2B01G415300 chr2A 92.819 4540 205 66 488 4957 650633440 650628952 0.000000e+00 6466.0
7 TraesCS2B01G415300 chr2A 89.756 205 12 5 288 491 650633996 650633800 2.430000e-63 254.0
8 TraesCS2B01G415300 chr4B 96.356 247 8 1 1 246 665294068 665293822 6.340000e-109 405.0
9 TraesCS2B01G415300 chr3B 95.951 247 9 1 1 246 824304804 824305050 2.950000e-107 399.0
10 TraesCS2B01G415300 chr3B 94.510 255 11 3 1 255 780864694 780864945 1.780000e-104 390.0
11 TraesCS2B01G415300 chr6B 94.882 254 11 2 1 254 339351331 339351080 3.820000e-106 396.0
12 TraesCS2B01G415300 chrUn 93.870 261 16 0 1 261 50438087 50438347 1.370000e-105 394.0
13 TraesCS2B01G415300 chrUn 93.870 261 16 0 1 261 263185544 263185284 1.370000e-105 394.0
14 TraesCS2B01G415300 chr6D 83.456 272 42 3 3331 3599 339972907 339973178 3.140000e-62 250.0
15 TraesCS2B01G415300 chr3D 86.000 100 14 0 1290 1389 604565904 604565805 2.000000e-19 108.0
16 TraesCS2B01G415300 chr3A 86.000 100 14 0 1290 1389 734443575 734443476 2.000000e-19 108.0
17 TraesCS2B01G415300 chr5B 85.106 94 14 0 1291 1384 136631204 136631111 4.330000e-16 97.1
18 TraesCS2B01G415300 chr5A 85.106 94 14 0 1291 1384 137282407 137282314 4.330000e-16 97.1
19 TraesCS2B01G415300 chr5D 84.043 94 15 0 1291 1384 123888203 123888110 2.020000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G415300 chr2B 593657289 593662547 5258 True 9712 9712 100.0000 1 5259 1 chr2B.!!$R3 5258
1 TraesCS2B01G415300 chr2D 506146506 506151569 5063 True 3794 6889 91.7645 288 5259 2 chr2D.!!$R2 4971
2 TraesCS2B01G415300 chr2A 650628952 650633996 5044 True 3360 6466 91.2875 288 4957 2 chr2A.!!$R1 4669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
102 103 0.108585 TCTTTTCTTCGGTGGCTGCT 59.891 50.000 0.0 0.0 0.00 4.24 F
103 104 0.239347 CTTTTCTTCGGTGGCTGCTG 59.761 55.000 0.0 0.0 0.00 4.41 F
142 143 0.319211 TGACGGGCGTTAGTGTCAAG 60.319 55.000 0.0 0.0 38.32 3.02 F
146 147 0.320421 GGGCGTTAGTGTCAAGCTCA 60.320 55.000 0.0 0.0 0.00 4.26 F
281 282 0.396695 CTGACCGTAGAGCCCCCTAA 60.397 60.000 0.0 0.0 0.00 2.69 F
1109 1498 0.452585 GAAGAGTTCGAGGAGGACGG 59.547 60.000 0.0 0.0 0.00 4.79 F
1445 1834 1.127567 TGCCAGCCACTCTGTACCTT 61.128 55.000 0.0 0.0 41.25 3.50 F
2736 3145 1.993370 GTGCTAGTTGCTAACCTGTCG 59.007 52.381 0.0 0.0 43.37 4.35 F
3788 4218 1.569653 CGTAAGGGAAAGGGAGGAGT 58.430 55.000 0.0 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1109 1498 2.184579 CCGCCTCCTCTTCGAACC 59.815 66.667 0.00 0.00 0.00 3.62 R
1685 2080 4.461081 TCAATGAAAATTCCTGGTTACCCG 59.539 41.667 0.00 0.00 0.00 5.28 R
2202 2611 4.812476 TTCGCTGATCCGCCGGTG 62.812 66.667 8.42 8.42 0.00 4.94 R
2213 2622 7.775397 ATCCCAAAATCAATTTATTTCGCTG 57.225 32.000 0.00 0.00 0.00 5.18 R
2290 2699 5.455392 CAACTTCAAGGTCAAGCACATAAG 58.545 41.667 0.00 0.00 0.00 1.73 R
2919 3330 3.867600 GCATTCTGAGGACTTGAAGCTGA 60.868 47.826 0.00 0.00 0.00 4.26 R
3345 3775 0.389426 CATGCCTGCAAAAGAGCACC 60.389 55.000 0.00 0.00 40.11 5.01 R
4070 4500 0.037232 CTTCCGGAACTGGTCACTCC 60.037 60.000 14.35 0.00 0.00 3.85 R
4772 5298 0.179127 GCGAGCTGTCAGACATGCTA 60.179 55.000 20.79 0.00 34.43 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.534729 CCTTAAAGGTCCGCAAAGCT 58.465 50.000 0.00 0.00 0.00 3.74
31 32 1.200020 CCTTAAAGGTCCGCAAAGCTG 59.800 52.381 0.00 0.00 0.00 4.24
32 33 0.596082 TTAAAGGTCCGCAAAGCTGC 59.404 50.000 0.00 0.00 45.75 5.25
48 49 1.077123 CTGCATATCAGCGATGGAGC 58.923 55.000 0.00 0.53 36.19 4.70
49 50 0.321034 TGCATATCAGCGATGGAGCC 60.321 55.000 0.00 0.00 38.01 4.70
50 51 1.357258 GCATATCAGCGATGGAGCCG 61.357 60.000 0.00 0.00 38.01 5.52
58 59 4.194720 GATGGAGCCGCGTCGAGT 62.195 66.667 4.92 0.00 0.00 4.18
59 60 3.701604 GATGGAGCCGCGTCGAGTT 62.702 63.158 4.92 0.00 0.00 3.01
60 61 3.701604 ATGGAGCCGCGTCGAGTTC 62.702 63.158 4.92 0.00 0.00 3.01
66 67 4.394078 CGCGTCGAGTTCGGGTGA 62.394 66.667 0.00 0.00 40.29 4.02
67 68 2.504244 GCGTCGAGTTCGGGTGAG 60.504 66.667 0.00 0.00 40.29 3.51
68 69 2.178521 CGTCGAGTTCGGGTGAGG 59.821 66.667 1.26 0.00 40.29 3.86
69 70 2.330372 CGTCGAGTTCGGGTGAGGA 61.330 63.158 1.26 0.00 40.29 3.71
70 71 1.507174 GTCGAGTTCGGGTGAGGAG 59.493 63.158 1.26 0.00 40.29 3.69
71 72 1.677966 TCGAGTTCGGGTGAGGAGG 60.678 63.158 1.26 0.00 40.29 4.30
72 73 1.977544 CGAGTTCGGGTGAGGAGGT 60.978 63.158 0.00 0.00 35.37 3.85
73 74 1.592223 GAGTTCGGGTGAGGAGGTG 59.408 63.158 0.00 0.00 0.00 4.00
74 75 0.898789 GAGTTCGGGTGAGGAGGTGA 60.899 60.000 0.00 0.00 0.00 4.02
75 76 0.252284 AGTTCGGGTGAGGAGGTGAT 60.252 55.000 0.00 0.00 0.00 3.06
76 77 0.175989 GTTCGGGTGAGGAGGTGATC 59.824 60.000 0.00 0.00 0.00 2.92
86 87 2.990066 GGAGGTGATCCGTCATTCTT 57.010 50.000 0.00 0.00 38.67 2.52
87 88 3.268023 GGAGGTGATCCGTCATTCTTT 57.732 47.619 0.00 0.00 38.67 2.52
88 89 3.610911 GGAGGTGATCCGTCATTCTTTT 58.389 45.455 0.00 0.00 38.67 2.27
89 90 3.623510 GGAGGTGATCCGTCATTCTTTTC 59.376 47.826 0.00 0.00 38.67 2.29
90 91 4.508662 GAGGTGATCCGTCATTCTTTTCT 58.491 43.478 0.00 0.00 36.60 2.52
91 92 4.911390 AGGTGATCCGTCATTCTTTTCTT 58.089 39.130 0.00 0.00 36.60 2.52
92 93 4.938226 AGGTGATCCGTCATTCTTTTCTTC 59.062 41.667 0.00 0.00 36.60 2.87
93 94 4.201724 GGTGATCCGTCATTCTTTTCTTCG 60.202 45.833 0.00 0.00 36.60 3.79
94 95 3.932710 TGATCCGTCATTCTTTTCTTCGG 59.067 43.478 0.00 0.00 38.16 4.30
95 96 3.396260 TCCGTCATTCTTTTCTTCGGT 57.604 42.857 0.00 0.00 38.04 4.69
96 97 3.064207 TCCGTCATTCTTTTCTTCGGTG 58.936 45.455 0.00 0.00 38.04 4.94
97 98 2.159627 CCGTCATTCTTTTCTTCGGTGG 59.840 50.000 0.00 0.00 33.20 4.61
98 99 2.412847 CGTCATTCTTTTCTTCGGTGGC 60.413 50.000 0.00 0.00 0.00 5.01
99 100 2.814336 GTCATTCTTTTCTTCGGTGGCT 59.186 45.455 0.00 0.00 0.00 4.75
100 101 2.813754 TCATTCTTTTCTTCGGTGGCTG 59.186 45.455 0.00 0.00 0.00 4.85
101 102 0.951558 TTCTTTTCTTCGGTGGCTGC 59.048 50.000 0.00 0.00 0.00 5.25
102 103 0.108585 TCTTTTCTTCGGTGGCTGCT 59.891 50.000 0.00 0.00 0.00 4.24
103 104 0.239347 CTTTTCTTCGGTGGCTGCTG 59.761 55.000 0.00 0.00 0.00 4.41
104 105 0.465460 TTTTCTTCGGTGGCTGCTGT 60.465 50.000 0.00 0.00 0.00 4.40
105 106 1.165907 TTTCTTCGGTGGCTGCTGTG 61.166 55.000 0.00 0.00 0.00 3.66
106 107 3.052082 CTTCGGTGGCTGCTGTGG 61.052 66.667 0.00 0.00 0.00 4.17
107 108 3.832237 CTTCGGTGGCTGCTGTGGT 62.832 63.158 0.00 0.00 0.00 4.16
108 109 4.624364 TCGGTGGCTGCTGTGGTG 62.624 66.667 0.00 0.00 0.00 4.17
110 111 4.586235 GGTGGCTGCTGTGGTGGT 62.586 66.667 0.00 0.00 0.00 4.16
111 112 3.289834 GTGGCTGCTGTGGTGGTG 61.290 66.667 0.00 0.00 0.00 4.17
129 130 4.760047 CCGGAGGCAAGTGACGGG 62.760 72.222 0.00 0.00 46.14 5.28
132 133 4.681978 GAGGCAAGTGACGGGCGT 62.682 66.667 0.00 0.00 34.32 5.68
133 134 4.250305 AGGCAAGTGACGGGCGTT 62.250 61.111 0.00 0.00 34.32 4.84
134 135 2.357760 GGCAAGTGACGGGCGTTA 60.358 61.111 0.00 0.00 0.00 3.18
135 136 2.388232 GGCAAGTGACGGGCGTTAG 61.388 63.158 0.00 0.00 0.00 2.34
136 137 1.666872 GCAAGTGACGGGCGTTAGT 60.667 57.895 0.00 0.00 0.00 2.24
137 138 1.897398 GCAAGTGACGGGCGTTAGTG 61.897 60.000 0.00 0.00 0.00 2.74
138 139 0.599204 CAAGTGACGGGCGTTAGTGT 60.599 55.000 0.00 0.00 0.00 3.55
139 140 0.319297 AAGTGACGGGCGTTAGTGTC 60.319 55.000 0.00 0.00 0.00 3.67
140 141 1.007038 GTGACGGGCGTTAGTGTCA 60.007 57.895 0.00 0.00 38.91 3.58
141 142 0.598158 GTGACGGGCGTTAGTGTCAA 60.598 55.000 0.00 0.00 42.43 3.18
142 143 0.319211 TGACGGGCGTTAGTGTCAAG 60.319 55.000 0.00 0.00 38.32 3.02
143 144 1.623973 GACGGGCGTTAGTGTCAAGC 61.624 60.000 0.00 0.00 0.00 4.01
144 145 1.374252 CGGGCGTTAGTGTCAAGCT 60.374 57.895 0.00 0.00 0.00 3.74
145 146 1.352156 CGGGCGTTAGTGTCAAGCTC 61.352 60.000 0.00 0.00 0.00 4.09
146 147 0.320421 GGGCGTTAGTGTCAAGCTCA 60.320 55.000 0.00 0.00 0.00 4.26
147 148 1.071605 GGCGTTAGTGTCAAGCTCAG 58.928 55.000 0.00 0.00 0.00 3.35
148 149 1.336887 GGCGTTAGTGTCAAGCTCAGA 60.337 52.381 0.00 0.00 0.00 3.27
149 150 1.989165 GCGTTAGTGTCAAGCTCAGAG 59.011 52.381 0.00 0.00 0.00 3.35
150 151 2.351835 GCGTTAGTGTCAAGCTCAGAGA 60.352 50.000 0.00 0.00 0.00 3.10
151 152 3.674682 GCGTTAGTGTCAAGCTCAGAGAT 60.675 47.826 0.00 0.00 0.00 2.75
152 153 3.856521 CGTTAGTGTCAAGCTCAGAGATG 59.143 47.826 0.00 0.00 0.00 2.90
153 154 4.617067 CGTTAGTGTCAAGCTCAGAGATGT 60.617 45.833 0.00 0.00 0.00 3.06
154 155 5.233988 GTTAGTGTCAAGCTCAGAGATGTT 58.766 41.667 0.00 0.00 0.00 2.71
155 156 3.924144 AGTGTCAAGCTCAGAGATGTTC 58.076 45.455 0.00 0.00 0.00 3.18
156 157 3.577848 AGTGTCAAGCTCAGAGATGTTCT 59.422 43.478 0.00 0.00 36.25 3.01
169 170 7.126726 CAGAGATGTTCTGTTACCTTTTCAG 57.873 40.000 0.00 0.00 46.77 3.02
170 171 6.708054 CAGAGATGTTCTGTTACCTTTTCAGT 59.292 38.462 0.00 0.00 46.77 3.41
171 172 7.227512 CAGAGATGTTCTGTTACCTTTTCAGTT 59.772 37.037 0.00 0.00 46.77 3.16
172 173 7.775561 AGAGATGTTCTGTTACCTTTTCAGTTT 59.224 33.333 0.00 0.00 33.93 2.66
173 174 8.293699 AGATGTTCTGTTACCTTTTCAGTTTT 57.706 30.769 0.00 0.00 0.00 2.43
174 175 8.190784 AGATGTTCTGTTACCTTTTCAGTTTTG 58.809 33.333 0.00 0.00 0.00 2.44
175 176 7.222000 TGTTCTGTTACCTTTTCAGTTTTGT 57.778 32.000 0.00 0.00 0.00 2.83
176 177 7.309920 TGTTCTGTTACCTTTTCAGTTTTGTC 58.690 34.615 0.00 0.00 0.00 3.18
177 178 7.040340 TGTTCTGTTACCTTTTCAGTTTTGTCA 60.040 33.333 0.00 0.00 0.00 3.58
178 179 7.639113 TCTGTTACCTTTTCAGTTTTGTCAT 57.361 32.000 0.00 0.00 0.00 3.06
179 180 7.479980 TCTGTTACCTTTTCAGTTTTGTCATG 58.520 34.615 0.00 0.00 0.00 3.07
180 181 7.122055 TCTGTTACCTTTTCAGTTTTGTCATGT 59.878 33.333 0.00 0.00 0.00 3.21
181 182 7.254852 TGTTACCTTTTCAGTTTTGTCATGTC 58.745 34.615 0.00 0.00 0.00 3.06
182 183 4.920376 ACCTTTTCAGTTTTGTCATGTCG 58.080 39.130 0.00 0.00 0.00 4.35
183 184 4.202010 ACCTTTTCAGTTTTGTCATGTCGG 60.202 41.667 0.00 0.00 0.00 4.79
184 185 4.202010 CCTTTTCAGTTTTGTCATGTCGGT 60.202 41.667 0.00 0.00 0.00 4.69
185 186 4.974368 TTTCAGTTTTGTCATGTCGGTT 57.026 36.364 0.00 0.00 0.00 4.44
186 187 4.545823 TTCAGTTTTGTCATGTCGGTTC 57.454 40.909 0.00 0.00 0.00 3.62
187 188 3.804036 TCAGTTTTGTCATGTCGGTTCT 58.196 40.909 0.00 0.00 0.00 3.01
188 189 4.196193 TCAGTTTTGTCATGTCGGTTCTT 58.804 39.130 0.00 0.00 0.00 2.52
189 190 5.361427 TCAGTTTTGTCATGTCGGTTCTTA 58.639 37.500 0.00 0.00 0.00 2.10
190 191 5.235616 TCAGTTTTGTCATGTCGGTTCTTAC 59.764 40.000 0.00 0.00 0.00 2.34
191 192 4.210537 AGTTTTGTCATGTCGGTTCTTACG 59.789 41.667 0.00 0.00 0.00 3.18
192 193 3.374220 TTGTCATGTCGGTTCTTACGT 57.626 42.857 0.00 0.00 0.00 3.57
193 194 2.668250 TGTCATGTCGGTTCTTACGTG 58.332 47.619 0.00 0.00 34.57 4.49
194 195 2.293955 TGTCATGTCGGTTCTTACGTGA 59.706 45.455 0.00 0.00 38.87 4.35
195 196 2.937591 TCATGTCGGTTCTTACGTGAC 58.062 47.619 0.00 0.00 36.86 3.67
196 197 2.555325 TCATGTCGGTTCTTACGTGACT 59.445 45.455 0.00 0.00 36.86 3.41
197 198 3.005050 TCATGTCGGTTCTTACGTGACTT 59.995 43.478 0.00 0.00 36.86 3.01
198 199 2.734670 TGTCGGTTCTTACGTGACTTG 58.265 47.619 0.00 0.00 33.76 3.16
199 200 2.099592 TGTCGGTTCTTACGTGACTTGT 59.900 45.455 0.00 0.00 33.76 3.16
200 201 3.314913 TGTCGGTTCTTACGTGACTTGTA 59.685 43.478 0.00 0.00 33.76 2.41
201 202 3.665871 GTCGGTTCTTACGTGACTTGTAC 59.334 47.826 0.00 0.00 31.41 2.90
202 203 3.565482 TCGGTTCTTACGTGACTTGTACT 59.435 43.478 0.00 0.00 0.00 2.73
203 204 4.036734 TCGGTTCTTACGTGACTTGTACTT 59.963 41.667 0.00 0.00 0.00 2.24
204 205 4.741676 CGGTTCTTACGTGACTTGTACTTT 59.258 41.667 0.00 0.00 0.00 2.66
205 206 5.332055 CGGTTCTTACGTGACTTGTACTTTG 60.332 44.000 0.00 0.00 0.00 2.77
206 207 5.521372 GGTTCTTACGTGACTTGTACTTTGT 59.479 40.000 0.00 0.00 0.00 2.83
207 208 6.036408 GGTTCTTACGTGACTTGTACTTTGTT 59.964 38.462 0.00 0.00 0.00 2.83
208 209 7.413328 GGTTCTTACGTGACTTGTACTTTGTTT 60.413 37.037 0.00 0.00 0.00 2.83
209 210 7.599630 TCTTACGTGACTTGTACTTTGTTTT 57.400 32.000 0.00 0.00 0.00 2.43
210 211 8.031848 TCTTACGTGACTTGTACTTTGTTTTT 57.968 30.769 0.00 0.00 0.00 1.94
237 238 8.988064 ATGATATGAATGAGACACGTATTACC 57.012 34.615 0.00 0.00 0.00 2.85
238 239 7.947282 TGATATGAATGAGACACGTATTACCA 58.053 34.615 0.00 0.00 0.00 3.25
239 240 8.585018 TGATATGAATGAGACACGTATTACCAT 58.415 33.333 0.00 0.00 0.00 3.55
240 241 8.763049 ATATGAATGAGACACGTATTACCATG 57.237 34.615 0.00 0.00 0.00 3.66
241 242 6.215495 TGAATGAGACACGTATTACCATGA 57.785 37.500 0.00 0.00 0.00 3.07
242 243 6.635755 TGAATGAGACACGTATTACCATGAA 58.364 36.000 0.00 0.00 0.00 2.57
243 244 7.100409 TGAATGAGACACGTATTACCATGAAA 58.900 34.615 0.00 0.00 0.00 2.69
244 245 7.604545 TGAATGAGACACGTATTACCATGAAAA 59.395 33.333 0.00 0.00 0.00 2.29
245 246 7.915293 ATGAGACACGTATTACCATGAAAAA 57.085 32.000 0.00 0.00 0.00 1.94
246 247 7.359262 TGAGACACGTATTACCATGAAAAAG 57.641 36.000 0.00 0.00 0.00 2.27
247 248 7.156000 TGAGACACGTATTACCATGAAAAAGA 58.844 34.615 0.00 0.00 0.00 2.52
248 249 7.330946 TGAGACACGTATTACCATGAAAAAGAG 59.669 37.037 0.00 0.00 0.00 2.85
249 250 7.383687 AGACACGTATTACCATGAAAAAGAGA 58.616 34.615 0.00 0.00 0.00 3.10
250 251 7.876068 AGACACGTATTACCATGAAAAAGAGAA 59.124 33.333 0.00 0.00 0.00 2.87
251 252 8.385898 ACACGTATTACCATGAAAAAGAGAAA 57.614 30.769 0.00 0.00 0.00 2.52
252 253 8.504005 ACACGTATTACCATGAAAAAGAGAAAG 58.496 33.333 0.00 0.00 0.00 2.62
253 254 8.717821 CACGTATTACCATGAAAAAGAGAAAGA 58.282 33.333 0.00 0.00 0.00 2.52
254 255 8.936864 ACGTATTACCATGAAAAAGAGAAAGAG 58.063 33.333 0.00 0.00 0.00 2.85
255 256 9.151471 CGTATTACCATGAAAAAGAGAAAGAGA 57.849 33.333 0.00 0.00 0.00 3.10
259 260 7.282332 ACCATGAAAAAGAGAAAGAGAAAGG 57.718 36.000 0.00 0.00 0.00 3.11
260 261 7.062957 ACCATGAAAAAGAGAAAGAGAAAGGA 58.937 34.615 0.00 0.00 0.00 3.36
261 262 7.561356 ACCATGAAAAAGAGAAAGAGAAAGGAA 59.439 33.333 0.00 0.00 0.00 3.36
262 263 7.864882 CCATGAAAAAGAGAAAGAGAAAGGAAC 59.135 37.037 0.00 0.00 0.00 3.62
264 265 7.989826 TGAAAAAGAGAAAGAGAAAGGAACTG 58.010 34.615 0.00 0.00 40.86 3.16
265 266 7.829211 TGAAAAAGAGAAAGAGAAAGGAACTGA 59.171 33.333 0.00 0.00 40.86 3.41
266 267 7.561021 AAAAGAGAAAGAGAAAGGAACTGAC 57.439 36.000 0.00 0.00 40.86 3.51
267 268 5.222079 AGAGAAAGAGAAAGGAACTGACC 57.778 43.478 0.00 0.00 40.86 4.02
268 269 3.991121 GAGAAAGAGAAAGGAACTGACCG 59.009 47.826 0.00 0.00 40.86 4.79
269 270 3.388350 AGAAAGAGAAAGGAACTGACCGT 59.612 43.478 0.00 0.00 40.86 4.83
270 271 4.587684 AGAAAGAGAAAGGAACTGACCGTA 59.412 41.667 0.00 0.00 40.86 4.02
271 272 4.522722 AAGAGAAAGGAACTGACCGTAG 57.477 45.455 0.00 0.00 40.86 3.51
272 273 3.764218 AGAGAAAGGAACTGACCGTAGA 58.236 45.455 0.00 0.00 40.86 2.59
273 274 3.759618 AGAGAAAGGAACTGACCGTAGAG 59.240 47.826 0.00 0.00 40.86 2.43
274 275 2.231721 AGAAAGGAACTGACCGTAGAGC 59.768 50.000 0.00 0.00 40.86 4.09
275 276 0.896226 AAGGAACTGACCGTAGAGCC 59.104 55.000 0.00 0.00 40.86 4.70
276 277 0.971447 AGGAACTGACCGTAGAGCCC 60.971 60.000 0.00 0.00 37.18 5.19
277 278 1.516423 GAACTGACCGTAGAGCCCC 59.484 63.158 0.00 0.00 0.00 5.80
278 279 1.957765 GAACTGACCGTAGAGCCCCC 61.958 65.000 0.00 0.00 0.00 5.40
279 280 2.042843 CTGACCGTAGAGCCCCCT 60.043 66.667 0.00 0.00 0.00 4.79
280 281 1.229359 CTGACCGTAGAGCCCCCTA 59.771 63.158 0.00 0.00 0.00 3.53
281 282 0.396695 CTGACCGTAGAGCCCCCTAA 60.397 60.000 0.00 0.00 0.00 2.69
282 283 0.685458 TGACCGTAGAGCCCCCTAAC 60.685 60.000 0.00 0.00 0.00 2.34
283 284 1.382283 ACCGTAGAGCCCCCTAACC 60.382 63.158 0.00 0.00 0.00 2.85
284 285 1.382146 CCGTAGAGCCCCCTAACCA 60.382 63.158 0.00 0.00 0.00 3.67
285 286 1.683418 CCGTAGAGCCCCCTAACCAC 61.683 65.000 0.00 0.00 0.00 4.16
286 287 1.683418 CGTAGAGCCCCCTAACCACC 61.683 65.000 0.00 0.00 0.00 4.61
287 288 0.619543 GTAGAGCCCCCTAACCACCA 60.620 60.000 0.00 0.00 0.00 4.17
288 289 0.619543 TAGAGCCCCCTAACCACCAC 60.620 60.000 0.00 0.00 0.00 4.16
289 290 3.325201 GAGCCCCCTAACCACCACG 62.325 68.421 0.00 0.00 0.00 4.94
290 291 4.419921 GCCCCCTAACCACCACGG 62.420 72.222 0.00 0.00 42.50 4.94
333 338 2.556287 GAACGAAGGCTGCAACGG 59.444 61.111 0.50 0.00 0.00 4.44
364 369 2.961768 CACCAAACCGGCACCATC 59.038 61.111 0.00 0.00 39.03 3.51
497 867 1.007038 GCACGTGGTAAGTCGGTCA 60.007 57.895 18.88 0.00 0.00 4.02
542 912 2.668632 CCGCCCAGGCTGTAAAGA 59.331 61.111 14.43 0.00 39.32 2.52
625 998 0.542232 ACTCCGCTCCACTAACCAGT 60.542 55.000 0.00 0.00 34.42 4.00
718 1091 1.268032 CCAAAGATAATCGCGTGCCAC 60.268 52.381 5.77 0.00 0.00 5.01
753 1128 3.479269 CGAAAGCGACGACAGGCC 61.479 66.667 0.00 0.00 40.82 5.19
793 1168 1.488527 GTAATCACGAGCCGCTAAGG 58.511 55.000 0.00 0.00 44.97 2.69
833 1208 4.773149 GGTAATCAGATTAGATCCCTCGGT 59.227 45.833 2.83 0.00 0.00 4.69
860 1235 9.485206 TTTGGATCAAAACAGAAGTACTACTAC 57.515 33.333 0.00 0.00 29.89 2.73
861 1236 8.418597 TGGATCAAAACAGAAGTACTACTACT 57.581 34.615 0.00 0.00 34.38 2.57
1109 1498 0.452585 GAAGAGTTCGAGGAGGACGG 59.547 60.000 0.00 0.00 0.00 4.79
1167 1556 2.164663 GCCGTCGACGATGATGCAA 61.165 57.895 37.65 0.00 43.02 4.08
1445 1834 1.127567 TGCCAGCCACTCTGTACCTT 61.128 55.000 0.00 0.00 41.25 3.50
1717 2113 9.753674 ACCAGGAATTTTCATTGAGATACTTTA 57.246 29.630 0.00 0.00 0.00 1.85
1729 2125 9.678941 CATTGAGATACTTTAGCACGATAAGTA 57.321 33.333 0.00 0.00 38.36 2.24
1773 2176 6.913873 TTCAAGCGGAACAAGTATATTACC 57.086 37.500 0.00 0.00 0.00 2.85
1860 2265 3.770625 GGAAGGCTCCTGAGTAAGC 57.229 57.895 0.00 0.00 38.88 3.09
1943 2348 3.487372 TCAGAGATGATACAGGGTACGG 58.513 50.000 0.00 0.00 0.00 4.02
1945 2350 3.889538 CAGAGATGATACAGGGTACGGAA 59.110 47.826 0.00 0.00 0.00 4.30
2034 2439 3.321968 GGTGCCTTTTGAATCAGGAGTTT 59.678 43.478 0.00 0.00 30.81 2.66
2202 2611 2.440539 ACACGATTCTGAGGACACAC 57.559 50.000 0.00 0.00 0.00 3.82
2213 2622 2.813908 GACACACACCGGCGGATC 60.814 66.667 35.78 15.20 0.00 3.36
2290 2699 2.557317 TGGATTTCGTAGCCGGATTTC 58.443 47.619 5.05 0.00 33.95 2.17
2369 2778 3.882444 CAGCTCAATGGGAATCTTCTCA 58.118 45.455 0.00 0.00 42.82 3.27
2610 3019 7.176690 TGCTTCCTAGTCCCTTAAAAAGAAATG 59.823 37.037 0.00 0.00 0.00 2.32
2736 3145 1.993370 GTGCTAGTTGCTAACCTGTCG 59.007 52.381 0.00 0.00 43.37 4.35
2895 3306 4.166144 ACTTAAGGTATGGCCAGCTGTAAT 59.834 41.667 13.05 5.65 40.61 1.89
2896 3307 3.669939 AAGGTATGGCCAGCTGTAATT 57.330 42.857 13.05 0.00 40.61 1.40
2905 3316 9.981114 GTATGGCCAGCTGTAATTTAATAAATT 57.019 29.630 13.05 14.46 43.19 1.82
2930 3341 7.166691 AGCAATTGAAATATCAGCTTCAAGT 57.833 32.000 10.34 1.82 42.96 3.16
2945 3356 4.094146 GCTTCAAGTCCTCAGAATGCTTAC 59.906 45.833 0.00 0.00 34.76 2.34
2948 3359 5.240891 TCAAGTCCTCAGAATGCTTACTTG 58.759 41.667 0.00 0.00 43.50 3.16
2954 3365 7.561722 AGTCCTCAGAATGCTTACTTGTATCTA 59.438 37.037 0.00 0.00 34.76 1.98
3014 3425 4.699257 GCAGAGAATGGTCAAGAAATCTGT 59.301 41.667 0.00 0.00 36.24 3.41
3062 3473 2.484264 GGTTCCGGATGAAGTTGACTTG 59.516 50.000 4.15 0.00 36.11 3.16
3101 3512 5.489792 TGATAAAGGTGCTGAGAACTTCT 57.510 39.130 0.00 0.00 0.00 2.85
3232 3644 3.971245 AGATCAACACTCAGGAAGGAC 57.029 47.619 0.00 0.00 0.00 3.85
3233 3645 3.242867 AGATCAACACTCAGGAAGGACA 58.757 45.455 0.00 0.00 0.00 4.02
3244 3657 7.050377 CACTCAGGAAGGACAATACACATTAT 58.950 38.462 0.00 0.00 0.00 1.28
3276 3689 9.362539 AGCAATAGCATGAAACTAAAAATGAAG 57.637 29.630 0.00 0.00 45.49 3.02
3277 3690 9.357652 GCAATAGCATGAAACTAAAAATGAAGA 57.642 29.630 0.00 0.00 41.58 2.87
3282 3695 9.852091 AGCATGAAACTAAAAATGAAGAGATTC 57.148 29.630 0.00 0.00 0.00 2.52
3283 3696 9.630098 GCATGAAACTAAAAATGAAGAGATTCA 57.370 29.630 0.00 0.00 35.15 2.57
3296 3709 6.003326 TGAAGAGATTCATTTGTGGCTTGTA 58.997 36.000 0.00 0.00 0.00 2.41
3327 3757 7.837863 TGGTACACAAACCATTTTTCTTGTAA 58.162 30.769 0.00 0.00 44.68 2.41
3345 3775 8.196802 TCTTGTAAATCATTTCGTGACCTATG 57.803 34.615 0.00 0.00 40.28 2.23
3551 3981 6.142139 TGAAAACTACAACAAGATGAATGCG 58.858 36.000 0.00 0.00 0.00 4.73
3788 4218 1.569653 CGTAAGGGAAAGGGAGGAGT 58.430 55.000 0.00 0.00 0.00 3.85
3789 4219 1.907255 CGTAAGGGAAAGGGAGGAGTT 59.093 52.381 0.00 0.00 0.00 3.01
3794 4224 2.318207 AGGGAAAGGGAGGAGTTAGCTA 59.682 50.000 0.00 0.00 0.00 3.32
3855 4285 2.248248 TGACCAAGACGAACCTCAGAT 58.752 47.619 0.00 0.00 0.00 2.90
4070 4500 2.153817 CGTCACAATGATCCGAATAGCG 59.846 50.000 0.00 0.00 40.47 4.26
4089 4519 0.037232 GGAGTGACCAGTTCCGGAAG 60.037 60.000 19.50 8.93 38.79 3.46
4099 4529 2.162408 CAGTTCCGGAAGAGAATTTGGC 59.838 50.000 19.50 1.08 0.00 4.52
4101 4531 2.556622 GTTCCGGAAGAGAATTTGGCAA 59.443 45.455 19.50 0.00 0.00 4.52
4102 4532 3.085952 TCCGGAAGAGAATTTGGCAAT 57.914 42.857 0.00 0.00 0.00 3.56
4105 4535 3.316308 CCGGAAGAGAATTTGGCAATAGG 59.684 47.826 0.00 0.00 0.00 2.57
4110 4540 4.589908 AGAGAATTTGGCAATAGGAACGT 58.410 39.130 0.00 0.00 0.00 3.99
4114 4544 2.570415 TTGGCAATAGGAACGTGGAA 57.430 45.000 0.00 0.00 0.00 3.53
4267 4697 7.236432 AGACAAGCTTGGGTATGATATGATAGT 59.764 37.037 29.18 2.67 0.00 2.12
4376 4809 2.660236 GTGTGAGTAGAAACGGTTAGCG 59.340 50.000 1.14 1.14 0.00 4.26
4379 4812 4.171754 GTGAGTAGAAACGGTTAGCGAAT 58.828 43.478 11.70 0.00 0.00 3.34
4497 4941 4.913335 AGTCACAGTGAACTTCGACTAA 57.087 40.909 4.32 0.00 34.76 2.24
4509 4953 8.805688 GTGAACTTCGACTAAATTATGTACCTC 58.194 37.037 0.00 0.00 0.00 3.85
4578 5022 6.699575 AGTTATTGTGGAATGTTATCAGCC 57.300 37.500 0.00 0.00 0.00 4.85
4603 5047 8.641541 CCAATGGCAGTATATATTCCAACTTTT 58.358 33.333 0.00 0.00 0.00 2.27
4619 5063 3.509442 ACTTTTCAAGGGGATGCATTCA 58.491 40.909 7.43 0.00 0.00 2.57
4706 5221 0.107263 TCAGTGCAGCTGTGGAAACA 60.107 50.000 16.64 0.00 45.23 2.83
4708 5223 2.153645 CAGTGCAGCTGTGGAAACATA 58.846 47.619 16.64 0.00 46.14 2.29
4709 5224 2.095567 CAGTGCAGCTGTGGAAACATAC 60.096 50.000 16.64 0.00 46.14 2.39
4711 5226 2.095567 GTGCAGCTGTGGAAACATACTG 60.096 50.000 16.64 5.22 46.14 2.74
4717 5232 6.093495 GCAGCTGTGGAAACATACTGTATTTA 59.907 38.462 16.64 0.00 46.14 1.40
4718 5233 7.201732 GCAGCTGTGGAAACATACTGTATTTAT 60.202 37.037 16.64 0.00 46.14 1.40
4753 5268 0.179018 GATGCATTCCCCCGTTAGCT 60.179 55.000 0.00 0.00 0.00 3.32
4757 5272 1.379527 CATTCCCCCGTTAGCTGAAC 58.620 55.000 0.00 0.00 34.41 3.18
4770 5296 3.238232 CTGAACAAGCTAGCAGCCA 57.762 52.632 18.83 9.56 43.77 4.75
4771 5297 1.747709 CTGAACAAGCTAGCAGCCAT 58.252 50.000 18.83 0.00 43.77 4.40
4772 5298 2.089980 CTGAACAAGCTAGCAGCCATT 58.910 47.619 18.83 3.43 43.77 3.16
4814 5340 0.948678 TACTGCGCCCAACAGAAAAC 59.051 50.000 4.18 0.00 38.55 2.43
5039 5582 2.125753 GTCGAGCTGCTCCTGGTG 60.126 66.667 22.97 9.39 0.00 4.17
5045 5588 4.463879 CTGCTCCTGGTGGCGAGG 62.464 72.222 0.00 0.00 0.00 4.63
5047 5590 3.706373 GCTCCTGGTGGCGAGGAA 61.706 66.667 1.80 0.00 37.88 3.36
5052 5595 1.078848 CTGGTGGCGAGGAAGGAAG 60.079 63.158 0.00 0.00 0.00 3.46
5151 5697 1.173913 GTGGTGGTAATTGCAGGTCC 58.826 55.000 0.00 0.00 0.00 4.46
5153 5699 1.145945 TGGTGGTAATTGCAGGTCCAA 59.854 47.619 0.00 0.00 0.00 3.53
5182 5728 0.460987 CTCCGCAGAGTCCATGTTCC 60.461 60.000 0.00 0.00 35.21 3.62
5183 5729 0.904865 TCCGCAGAGTCCATGTTCCT 60.905 55.000 0.00 0.00 0.00 3.36
5184 5730 0.460987 CCGCAGAGTCCATGTTCCTC 60.461 60.000 0.00 0.00 0.00 3.71
5185 5731 0.534412 CGCAGAGTCCATGTTCCTCT 59.466 55.000 0.00 0.00 36.00 3.69
5186 5732 1.470632 CGCAGAGTCCATGTTCCTCTC 60.471 57.143 3.73 0.00 33.38 3.20
5187 5733 1.830477 GCAGAGTCCATGTTCCTCTCT 59.170 52.381 3.73 0.00 33.38 3.10
5188 5734 3.523606 CAGAGTCCATGTTCCTCTCTG 57.476 52.381 0.00 0.00 43.47 3.35
5190 5736 2.183679 GAGTCCATGTTCCTCTCTGGT 58.816 52.381 0.00 0.00 37.07 4.00
5191 5737 1.905215 AGTCCATGTTCCTCTCTGGTG 59.095 52.381 0.00 0.00 37.07 4.17
5197 5765 6.042093 GTCCATGTTCCTCTCTGGTGATAATA 59.958 42.308 0.00 0.00 37.07 0.98
5238 5811 2.886523 TGTTGGTGCTTTTCTGATGAGG 59.113 45.455 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.200020 CAGCTTTGCGGACCTTTAAGG 59.800 52.381 9.81 9.81 42.49 2.69
12 13 1.401539 GCAGCTTTGCGGACCTTTAAG 60.402 52.381 0.00 0.00 0.00 1.85
13 14 0.596082 GCAGCTTTGCGGACCTTTAA 59.404 50.000 0.00 0.00 0.00 1.52
14 15 0.536233 TGCAGCTTTGCGGACCTTTA 60.536 50.000 0.00 0.00 37.69 1.85
15 16 1.181098 ATGCAGCTTTGCGGACCTTT 61.181 50.000 0.00 0.00 37.69 3.11
16 17 0.322456 TATGCAGCTTTGCGGACCTT 60.322 50.000 0.00 0.00 37.69 3.50
17 18 0.107017 ATATGCAGCTTTGCGGACCT 60.107 50.000 0.00 0.00 37.69 3.85
18 19 0.308993 GATATGCAGCTTTGCGGACC 59.691 55.000 0.00 0.00 37.69 4.46
19 20 1.003116 CTGATATGCAGCTTTGCGGAC 60.003 52.381 0.00 0.00 37.90 4.79
20 21 1.302366 CTGATATGCAGCTTTGCGGA 58.698 50.000 0.00 0.00 37.90 5.54
21 22 3.839654 CTGATATGCAGCTTTGCGG 57.160 52.632 0.00 0.00 37.90 5.69
30 31 0.321034 GGCTCCATCGCTGATATGCA 60.321 55.000 0.00 0.00 0.00 3.96
31 32 1.357258 CGGCTCCATCGCTGATATGC 61.357 60.000 0.00 0.00 38.57 3.14
32 33 2.746997 CGGCTCCATCGCTGATATG 58.253 57.895 0.00 0.00 38.57 1.78
41 42 3.701604 AACTCGACGCGGCTCCATC 62.702 63.158 11.76 0.00 0.00 3.51
42 43 3.701604 GAACTCGACGCGGCTCCAT 62.702 63.158 11.76 0.00 0.00 3.41
43 44 4.415332 GAACTCGACGCGGCTCCA 62.415 66.667 11.76 0.00 0.00 3.86
49 50 4.394078 TCACCCGAACTCGACGCG 62.394 66.667 3.53 3.53 43.02 6.01
50 51 2.504244 CTCACCCGAACTCGACGC 60.504 66.667 0.00 0.00 43.02 5.19
51 52 2.178521 CCTCACCCGAACTCGACG 59.821 66.667 0.00 0.00 43.02 5.12
52 53 1.507174 CTCCTCACCCGAACTCGAC 59.493 63.158 0.00 0.00 43.02 4.20
53 54 1.677966 CCTCCTCACCCGAACTCGA 60.678 63.158 0.00 0.00 43.02 4.04
54 55 1.977544 ACCTCCTCACCCGAACTCG 60.978 63.158 0.00 0.00 39.44 4.18
55 56 0.898789 TCACCTCCTCACCCGAACTC 60.899 60.000 0.00 0.00 0.00 3.01
56 57 0.252284 ATCACCTCCTCACCCGAACT 60.252 55.000 0.00 0.00 0.00 3.01
57 58 0.175989 GATCACCTCCTCACCCGAAC 59.824 60.000 0.00 0.00 0.00 3.95
58 59 0.976073 GGATCACCTCCTCACCCGAA 60.976 60.000 0.00 0.00 41.29 4.30
59 60 1.381327 GGATCACCTCCTCACCCGA 60.381 63.158 0.00 0.00 41.29 5.14
60 61 2.786495 CGGATCACCTCCTCACCCG 61.786 68.421 0.00 0.00 42.47 5.28
61 62 1.677637 GACGGATCACCTCCTCACCC 61.678 65.000 0.00 0.00 42.47 4.61
62 63 0.970937 TGACGGATCACCTCCTCACC 60.971 60.000 0.00 0.00 42.47 4.02
63 64 1.115467 ATGACGGATCACCTCCTCAC 58.885 55.000 0.00 0.00 42.47 3.51
64 65 1.757118 GAATGACGGATCACCTCCTCA 59.243 52.381 0.00 0.00 42.47 3.86
65 66 2.035632 AGAATGACGGATCACCTCCTC 58.964 52.381 0.00 0.00 42.47 3.71
66 67 2.166907 AGAATGACGGATCACCTCCT 57.833 50.000 0.00 0.00 42.47 3.69
67 68 2.990066 AAGAATGACGGATCACCTCC 57.010 50.000 0.00 0.00 37.79 4.30
68 69 4.508662 AGAAAAGAATGACGGATCACCTC 58.491 43.478 0.00 0.00 37.79 3.85
69 70 4.559862 AGAAAAGAATGACGGATCACCT 57.440 40.909 0.00 0.00 37.79 4.00
70 71 4.201724 CGAAGAAAAGAATGACGGATCACC 60.202 45.833 0.00 0.00 37.79 4.02
71 72 4.201724 CCGAAGAAAAGAATGACGGATCAC 60.202 45.833 0.00 0.00 41.09 3.06
72 73 3.932710 CCGAAGAAAAGAATGACGGATCA 59.067 43.478 0.00 0.00 41.09 2.92
73 74 3.933332 ACCGAAGAAAAGAATGACGGATC 59.067 43.478 0.00 0.00 41.09 3.36
74 75 3.684788 CACCGAAGAAAAGAATGACGGAT 59.315 43.478 0.00 0.00 41.09 4.18
75 76 3.064207 CACCGAAGAAAAGAATGACGGA 58.936 45.455 0.00 0.00 41.09 4.69
76 77 2.159627 CCACCGAAGAAAAGAATGACGG 59.840 50.000 0.00 0.00 43.61 4.79
77 78 2.412847 GCCACCGAAGAAAAGAATGACG 60.413 50.000 0.00 0.00 0.00 4.35
78 79 2.814336 AGCCACCGAAGAAAAGAATGAC 59.186 45.455 0.00 0.00 0.00 3.06
79 80 2.813754 CAGCCACCGAAGAAAAGAATGA 59.186 45.455 0.00 0.00 0.00 2.57
80 81 2.669391 GCAGCCACCGAAGAAAAGAATG 60.669 50.000 0.00 0.00 0.00 2.67
81 82 1.541588 GCAGCCACCGAAGAAAAGAAT 59.458 47.619 0.00 0.00 0.00 2.40
82 83 0.951558 GCAGCCACCGAAGAAAAGAA 59.048 50.000 0.00 0.00 0.00 2.52
83 84 0.108585 AGCAGCCACCGAAGAAAAGA 59.891 50.000 0.00 0.00 0.00 2.52
84 85 0.239347 CAGCAGCCACCGAAGAAAAG 59.761 55.000 0.00 0.00 0.00 2.27
85 86 0.465460 ACAGCAGCCACCGAAGAAAA 60.465 50.000 0.00 0.00 0.00 2.29
86 87 1.148273 ACAGCAGCCACCGAAGAAA 59.852 52.632 0.00 0.00 0.00 2.52
87 88 1.597854 CACAGCAGCCACCGAAGAA 60.598 57.895 0.00 0.00 0.00 2.52
88 89 2.031012 CACAGCAGCCACCGAAGA 59.969 61.111 0.00 0.00 0.00 2.87
89 90 3.052082 CCACAGCAGCCACCGAAG 61.052 66.667 0.00 0.00 0.00 3.79
90 91 3.872603 ACCACAGCAGCCACCGAA 61.873 61.111 0.00 0.00 0.00 4.30
91 92 4.624364 CACCACAGCAGCCACCGA 62.624 66.667 0.00 0.00 0.00 4.69
93 94 4.586235 ACCACCACAGCAGCCACC 62.586 66.667 0.00 0.00 0.00 4.61
94 95 3.289834 CACCACCACAGCAGCCAC 61.290 66.667 0.00 0.00 0.00 5.01
101 102 4.704833 CCTCCGGCACCACCACAG 62.705 72.222 0.00 0.00 39.03 3.66
112 113 4.760047 CCCGTCACTTGCCTCCGG 62.760 72.222 0.00 0.00 38.39 5.14
115 116 2.775032 TAACGCCCGTCACTTGCCTC 62.775 60.000 0.00 0.00 0.00 4.70
116 117 2.781595 CTAACGCCCGTCACTTGCCT 62.782 60.000 0.00 0.00 0.00 4.75
117 118 2.357760 TAACGCCCGTCACTTGCC 60.358 61.111 0.00 0.00 0.00 4.52
118 119 1.666872 ACTAACGCCCGTCACTTGC 60.667 57.895 0.00 0.00 0.00 4.01
119 120 0.599204 ACACTAACGCCCGTCACTTG 60.599 55.000 0.00 0.00 0.00 3.16
120 121 0.319297 GACACTAACGCCCGTCACTT 60.319 55.000 0.00 0.00 0.00 3.16
121 122 1.288127 GACACTAACGCCCGTCACT 59.712 57.895 0.00 0.00 0.00 3.41
122 123 0.598158 TTGACACTAACGCCCGTCAC 60.598 55.000 0.00 0.00 38.07 3.67
123 124 0.319211 CTTGACACTAACGCCCGTCA 60.319 55.000 0.00 0.00 36.63 4.35
124 125 1.623973 GCTTGACACTAACGCCCGTC 61.624 60.000 0.00 0.00 0.00 4.79
125 126 1.666872 GCTTGACACTAACGCCCGT 60.667 57.895 0.00 0.00 0.00 5.28
126 127 1.352156 GAGCTTGACACTAACGCCCG 61.352 60.000 0.00 0.00 0.00 6.13
127 128 0.320421 TGAGCTTGACACTAACGCCC 60.320 55.000 0.00 0.00 0.00 6.13
128 129 1.071605 CTGAGCTTGACACTAACGCC 58.928 55.000 0.00 0.00 0.00 5.68
129 130 1.989165 CTCTGAGCTTGACACTAACGC 59.011 52.381 0.00 0.00 0.00 4.84
130 131 3.560902 TCTCTGAGCTTGACACTAACG 57.439 47.619 0.00 0.00 0.00 3.18
131 132 4.815269 ACATCTCTGAGCTTGACACTAAC 58.185 43.478 12.47 0.00 0.00 2.34
132 133 5.244851 AGAACATCTCTGAGCTTGACACTAA 59.755 40.000 12.47 0.00 31.12 2.24
133 134 4.769488 AGAACATCTCTGAGCTTGACACTA 59.231 41.667 12.47 0.00 31.12 2.74
134 135 3.577848 AGAACATCTCTGAGCTTGACACT 59.422 43.478 12.47 6.99 31.12 3.55
135 136 3.924144 AGAACATCTCTGAGCTTGACAC 58.076 45.455 12.47 5.44 31.12 3.67
146 147 6.831976 ACTGAAAAGGTAACAGAACATCTCT 58.168 36.000 0.00 0.00 41.41 3.10
147 148 7.497925 AACTGAAAAGGTAACAGAACATCTC 57.502 36.000 0.00 0.00 41.41 2.75
148 149 7.881775 AAACTGAAAAGGTAACAGAACATCT 57.118 32.000 0.00 0.00 41.41 2.90
149 150 7.973944 ACAAAACTGAAAAGGTAACAGAACATC 59.026 33.333 0.00 0.00 41.41 3.06
150 151 7.836842 ACAAAACTGAAAAGGTAACAGAACAT 58.163 30.769 0.00 0.00 41.41 2.71
151 152 7.040340 TGACAAAACTGAAAAGGTAACAGAACA 60.040 33.333 0.00 0.00 41.41 3.18
152 153 7.309920 TGACAAAACTGAAAAGGTAACAGAAC 58.690 34.615 0.00 0.00 41.41 3.01
153 154 7.455641 TGACAAAACTGAAAAGGTAACAGAA 57.544 32.000 0.00 0.00 41.41 3.02
154 155 7.122055 ACATGACAAAACTGAAAAGGTAACAGA 59.878 33.333 0.00 0.00 41.41 3.41
155 156 7.257722 ACATGACAAAACTGAAAAGGTAACAG 58.742 34.615 0.00 0.00 41.41 3.16
156 157 7.164230 ACATGACAAAACTGAAAAGGTAACA 57.836 32.000 0.00 0.00 41.41 2.41
157 158 6.413818 CGACATGACAAAACTGAAAAGGTAAC 59.586 38.462 0.00 0.00 0.00 2.50
158 159 6.459024 CCGACATGACAAAACTGAAAAGGTAA 60.459 38.462 0.00 0.00 0.00 2.85
159 160 5.008217 CCGACATGACAAAACTGAAAAGGTA 59.992 40.000 0.00 0.00 0.00 3.08
160 161 4.202010 CCGACATGACAAAACTGAAAAGGT 60.202 41.667 0.00 0.00 0.00 3.50
161 162 4.202010 ACCGACATGACAAAACTGAAAAGG 60.202 41.667 0.00 0.00 0.00 3.11
162 163 4.920376 ACCGACATGACAAAACTGAAAAG 58.080 39.130 0.00 0.00 0.00 2.27
163 164 4.974368 ACCGACATGACAAAACTGAAAA 57.026 36.364 0.00 0.00 0.00 2.29
164 165 4.638421 AGAACCGACATGACAAAACTGAAA 59.362 37.500 0.00 0.00 0.00 2.69
165 166 4.196193 AGAACCGACATGACAAAACTGAA 58.804 39.130 0.00 0.00 0.00 3.02
166 167 3.804036 AGAACCGACATGACAAAACTGA 58.196 40.909 0.00 0.00 0.00 3.41
167 168 4.552166 AAGAACCGACATGACAAAACTG 57.448 40.909 0.00 0.00 0.00 3.16
168 169 4.210537 CGTAAGAACCGACATGACAAAACT 59.789 41.667 0.00 0.00 43.02 2.66
169 170 4.025480 ACGTAAGAACCGACATGACAAAAC 60.025 41.667 0.00 0.00 43.62 2.43
170 171 4.025563 CACGTAAGAACCGACATGACAAAA 60.026 41.667 0.00 0.00 43.62 2.44
171 172 3.491639 CACGTAAGAACCGACATGACAAA 59.508 43.478 0.00 0.00 43.62 2.83
172 173 3.054166 CACGTAAGAACCGACATGACAA 58.946 45.455 0.00 0.00 43.62 3.18
173 174 2.293955 TCACGTAAGAACCGACATGACA 59.706 45.455 0.00 0.00 43.62 3.58
174 175 2.660236 GTCACGTAAGAACCGACATGAC 59.340 50.000 0.00 0.00 43.62 3.06
175 176 2.555325 AGTCACGTAAGAACCGACATGA 59.445 45.455 0.00 0.00 43.62 3.07
176 177 2.942710 AGTCACGTAAGAACCGACATG 58.057 47.619 0.00 0.00 43.62 3.21
177 178 3.243636 ACAAGTCACGTAAGAACCGACAT 60.244 43.478 0.00 0.00 43.62 3.06
178 179 2.099592 ACAAGTCACGTAAGAACCGACA 59.900 45.455 0.00 0.00 43.62 4.35
179 180 2.735823 ACAAGTCACGTAAGAACCGAC 58.264 47.619 0.00 0.00 43.62 4.79
180 181 3.565482 AGTACAAGTCACGTAAGAACCGA 59.435 43.478 0.00 0.00 43.62 4.69
181 182 3.893720 AGTACAAGTCACGTAAGAACCG 58.106 45.455 0.00 0.00 43.62 4.44
182 183 5.521372 ACAAAGTACAAGTCACGTAAGAACC 59.479 40.000 0.00 0.00 43.62 3.62
183 184 6.579491 ACAAAGTACAAGTCACGTAAGAAC 57.421 37.500 0.00 0.00 43.62 3.01
184 185 7.599630 AAACAAAGTACAAGTCACGTAAGAA 57.400 32.000 0.00 0.00 43.62 2.52
185 186 7.599630 AAAACAAAGTACAAGTCACGTAAGA 57.400 32.000 0.00 0.00 43.62 2.10
212 213 8.585018 TGGTAATACGTGTCTCATTCATATCAT 58.415 33.333 0.00 0.00 0.00 2.45
213 214 7.947282 TGGTAATACGTGTCTCATTCATATCA 58.053 34.615 0.00 0.00 0.00 2.15
214 215 8.864024 CATGGTAATACGTGTCTCATTCATATC 58.136 37.037 0.00 0.00 0.00 1.63
215 216 8.585018 TCATGGTAATACGTGTCTCATTCATAT 58.415 33.333 0.00 0.00 0.00 1.78
216 217 7.947282 TCATGGTAATACGTGTCTCATTCATA 58.053 34.615 0.00 0.00 0.00 2.15
217 218 6.816136 TCATGGTAATACGTGTCTCATTCAT 58.184 36.000 0.00 0.00 0.00 2.57
218 219 6.215495 TCATGGTAATACGTGTCTCATTCA 57.785 37.500 0.00 0.00 0.00 2.57
219 220 7.534085 TTTCATGGTAATACGTGTCTCATTC 57.466 36.000 0.00 0.00 0.00 2.67
220 221 7.915293 TTTTCATGGTAATACGTGTCTCATT 57.085 32.000 0.00 0.00 0.00 2.57
221 222 7.822334 TCTTTTTCATGGTAATACGTGTCTCAT 59.178 33.333 0.00 0.00 0.00 2.90
222 223 7.156000 TCTTTTTCATGGTAATACGTGTCTCA 58.844 34.615 0.00 0.00 0.00 3.27
223 224 7.544566 TCTCTTTTTCATGGTAATACGTGTCTC 59.455 37.037 0.00 0.00 0.00 3.36
224 225 7.383687 TCTCTTTTTCATGGTAATACGTGTCT 58.616 34.615 0.00 0.00 0.00 3.41
225 226 7.591006 TCTCTTTTTCATGGTAATACGTGTC 57.409 36.000 0.00 0.00 0.00 3.67
226 227 7.972832 TTCTCTTTTTCATGGTAATACGTGT 57.027 32.000 0.00 0.00 0.00 4.49
227 228 8.717821 TCTTTCTCTTTTTCATGGTAATACGTG 58.282 33.333 0.00 0.00 0.00 4.49
228 229 8.842358 TCTTTCTCTTTTTCATGGTAATACGT 57.158 30.769 0.00 0.00 0.00 3.57
229 230 9.151471 TCTCTTTCTCTTTTTCATGGTAATACG 57.849 33.333 0.00 0.00 0.00 3.06
233 234 8.850156 CCTTTCTCTTTCTCTTTTTCATGGTAA 58.150 33.333 0.00 0.00 0.00 2.85
234 235 8.217799 TCCTTTCTCTTTCTCTTTTTCATGGTA 58.782 33.333 0.00 0.00 0.00 3.25
235 236 7.062957 TCCTTTCTCTTTCTCTTTTTCATGGT 58.937 34.615 0.00 0.00 0.00 3.55
236 237 7.516198 TCCTTTCTCTTTCTCTTTTTCATGG 57.484 36.000 0.00 0.00 0.00 3.66
237 238 8.628280 AGTTCCTTTCTCTTTCTCTTTTTCATG 58.372 33.333 0.00 0.00 0.00 3.07
238 239 8.628280 CAGTTCCTTTCTCTTTCTCTTTTTCAT 58.372 33.333 0.00 0.00 0.00 2.57
239 240 7.829211 TCAGTTCCTTTCTCTTTCTCTTTTTCA 59.171 33.333 0.00 0.00 0.00 2.69
240 241 8.126074 GTCAGTTCCTTTCTCTTTCTCTTTTTC 58.874 37.037 0.00 0.00 0.00 2.29
241 242 7.067615 GGTCAGTTCCTTTCTCTTTCTCTTTTT 59.932 37.037 0.00 0.00 0.00 1.94
242 243 6.544197 GGTCAGTTCCTTTCTCTTTCTCTTTT 59.456 38.462 0.00 0.00 0.00 2.27
243 244 6.058833 GGTCAGTTCCTTTCTCTTTCTCTTT 58.941 40.000 0.00 0.00 0.00 2.52
244 245 5.616270 GGTCAGTTCCTTTCTCTTTCTCTT 58.384 41.667 0.00 0.00 0.00 2.85
245 246 4.262249 CGGTCAGTTCCTTTCTCTTTCTCT 60.262 45.833 0.00 0.00 0.00 3.10
246 247 3.991121 CGGTCAGTTCCTTTCTCTTTCTC 59.009 47.826 0.00 0.00 0.00 2.87
247 248 3.388350 ACGGTCAGTTCCTTTCTCTTTCT 59.612 43.478 0.00 0.00 0.00 2.52
248 249 3.729966 ACGGTCAGTTCCTTTCTCTTTC 58.270 45.455 0.00 0.00 0.00 2.62
249 250 3.840124 ACGGTCAGTTCCTTTCTCTTT 57.160 42.857 0.00 0.00 0.00 2.52
250 251 4.150359 TCTACGGTCAGTTCCTTTCTCTT 58.850 43.478 0.00 0.00 0.00 2.85
251 252 3.759618 CTCTACGGTCAGTTCCTTTCTCT 59.240 47.826 0.00 0.00 0.00 3.10
252 253 3.673866 GCTCTACGGTCAGTTCCTTTCTC 60.674 52.174 0.00 0.00 0.00 2.87
253 254 2.231721 GCTCTACGGTCAGTTCCTTTCT 59.768 50.000 0.00 0.00 0.00 2.52
254 255 2.608268 GCTCTACGGTCAGTTCCTTTC 58.392 52.381 0.00 0.00 0.00 2.62
255 256 1.275573 GGCTCTACGGTCAGTTCCTTT 59.724 52.381 0.00 0.00 0.00 3.11
256 257 0.896226 GGCTCTACGGTCAGTTCCTT 59.104 55.000 0.00 0.00 0.00 3.36
257 258 0.971447 GGGCTCTACGGTCAGTTCCT 60.971 60.000 0.00 0.00 0.00 3.36
258 259 1.516423 GGGCTCTACGGTCAGTTCC 59.484 63.158 0.00 0.00 0.00 3.62
259 260 1.516423 GGGGCTCTACGGTCAGTTC 59.484 63.158 0.00 0.00 0.00 3.01
260 261 1.988406 GGGGGCTCTACGGTCAGTT 60.988 63.158 0.00 0.00 0.00 3.16
261 262 1.578215 TAGGGGGCTCTACGGTCAGT 61.578 60.000 0.00 0.00 0.00 3.41
262 263 0.396695 TTAGGGGGCTCTACGGTCAG 60.397 60.000 0.00 0.00 0.00 3.51
263 264 0.685458 GTTAGGGGGCTCTACGGTCA 60.685 60.000 0.00 0.00 0.00 4.02
264 265 1.398174 GGTTAGGGGGCTCTACGGTC 61.398 65.000 0.00 0.00 0.00 4.79
265 266 1.382283 GGTTAGGGGGCTCTACGGT 60.382 63.158 0.00 0.00 0.00 4.83
266 267 1.382146 TGGTTAGGGGGCTCTACGG 60.382 63.158 0.00 0.00 0.00 4.02
267 268 1.683418 GGTGGTTAGGGGGCTCTACG 61.683 65.000 0.00 0.00 0.00 3.51
268 269 0.619543 TGGTGGTTAGGGGGCTCTAC 60.620 60.000 0.00 0.00 0.00 2.59
269 270 0.619543 GTGGTGGTTAGGGGGCTCTA 60.620 60.000 0.00 0.00 0.00 2.43
270 271 1.923909 GTGGTGGTTAGGGGGCTCT 60.924 63.158 0.00 0.00 0.00 4.09
271 272 2.675371 GTGGTGGTTAGGGGGCTC 59.325 66.667 0.00 0.00 0.00 4.70
272 273 3.327404 CGTGGTGGTTAGGGGGCT 61.327 66.667 0.00 0.00 0.00 5.19
273 274 4.419921 CCGTGGTGGTTAGGGGGC 62.420 72.222 0.00 0.00 0.00 5.80
282 283 2.660802 GGAGGTGTACCGTGGTGG 59.339 66.667 0.72 0.00 46.41 4.61
283 284 2.260434 CGGAGGTGTACCGTGGTG 59.740 66.667 0.72 0.00 44.57 4.17
289 290 2.976356 GGTGGTCGGAGGTGTACC 59.024 66.667 0.00 0.00 0.00 3.34
290 291 2.570181 CGGTGGTCGGAGGTGTAC 59.430 66.667 0.00 0.00 34.75 2.90
291 292 3.376078 GCGGTGGTCGGAGGTGTA 61.376 66.667 0.00 0.00 39.69 2.90
293 294 4.082523 ATGCGGTGGTCGGAGGTG 62.083 66.667 0.00 0.00 43.73 4.00
294 295 4.082523 CATGCGGTGGTCGGAGGT 62.083 66.667 0.00 0.00 43.73 3.85
338 343 3.423154 GGTTTGGTGCCGAGCGAG 61.423 66.667 0.00 0.00 0.00 5.03
625 998 2.285083 AGCATTAGTTAAATCGCGGCA 58.715 42.857 6.13 0.00 31.15 5.69
833 1208 8.974060 AGTAGTACTTCTGTTTTGATCCAAAA 57.026 30.769 0.00 1.19 40.41 2.44
859 1234 5.174037 TGCTGCCCAGTTTTTATAGTAGT 57.826 39.130 0.00 0.00 0.00 2.73
860 1235 6.322491 GTTTGCTGCCCAGTTTTTATAGTAG 58.678 40.000 0.00 0.00 0.00 2.57
861 1236 5.106475 CGTTTGCTGCCCAGTTTTTATAGTA 60.106 40.000 0.00 0.00 0.00 1.82
1109 1498 2.184579 CCGCCTCCTCTTCGAACC 59.815 66.667 0.00 0.00 0.00 3.62
1445 1834 8.988064 TTAATACTGCAACAAAGAAACAAACA 57.012 26.923 0.00 0.00 0.00 2.83
1473 1865 5.032863 CGATAAAAGGAAATTCAGCAGCAG 58.967 41.667 0.00 0.00 0.00 4.24
1577 1972 5.941948 AAAAAGATACACGGTCCAGAAAG 57.058 39.130 0.00 0.00 0.00 2.62
1685 2080 4.461081 TCAATGAAAATTCCTGGTTACCCG 59.539 41.667 0.00 0.00 0.00 5.28
2202 2611 4.812476 TTCGCTGATCCGCCGGTG 62.812 66.667 8.42 8.42 0.00 4.94
2213 2622 7.775397 ATCCCAAAATCAATTTATTTCGCTG 57.225 32.000 0.00 0.00 0.00 5.18
2290 2699 5.455392 CAACTTCAAGGTCAAGCACATAAG 58.545 41.667 0.00 0.00 0.00 1.73
2369 2778 9.125026 CAACCTAATCCAAAACATAAGCTAGAT 57.875 33.333 0.00 0.00 0.00 1.98
2610 3019 5.183904 AGAAAACATACAATCTGAGGCAACC 59.816 40.000 0.00 0.00 37.17 3.77
2736 3145 4.034048 CACTGCACGGGAAAATATGACTAC 59.966 45.833 0.00 0.00 0.00 2.73
2905 3316 8.284945 ACTTGAAGCTGATATTTCAATTGCTA 57.715 30.769 0.00 0.00 41.10 3.49
2919 3330 3.867600 GCATTCTGAGGACTTGAAGCTGA 60.868 47.826 0.00 0.00 0.00 4.26
2930 3341 6.798427 AGATACAAGTAAGCATTCTGAGGA 57.202 37.500 0.00 0.00 0.00 3.71
3014 3425 4.141287 CACTGTTTAATTGGTCCCTGACA 58.859 43.478 0.00 0.00 33.68 3.58
3062 3473 4.982701 AACCCAGCCAGGCAGTGC 62.983 66.667 15.80 6.55 35.39 4.40
3101 3512 7.723324 AGTAAAAGAGAGTTAGTGTTACTGCA 58.277 34.615 0.00 0.00 31.06 4.41
3232 3644 8.961092 GCTATTGCTCAAACATAATGTGTATTG 58.039 33.333 0.00 0.00 36.72 1.90
3233 3645 8.685427 TGCTATTGCTCAAACATAATGTGTATT 58.315 29.630 0.00 0.00 39.15 1.89
3244 3657 5.710513 AGTTTCATGCTATTGCTCAAACA 57.289 34.783 16.70 0.00 40.48 2.83
3276 3689 4.439289 GCCTACAAGCCACAAATGAATCTC 60.439 45.833 0.00 0.00 0.00 2.75
3277 3690 3.445096 GCCTACAAGCCACAAATGAATCT 59.555 43.478 0.00 0.00 0.00 2.40
3278 3691 3.193267 TGCCTACAAGCCACAAATGAATC 59.807 43.478 0.00 0.00 0.00 2.52
3279 3692 3.164268 TGCCTACAAGCCACAAATGAAT 58.836 40.909 0.00 0.00 0.00 2.57
3280 3693 2.591923 TGCCTACAAGCCACAAATGAA 58.408 42.857 0.00 0.00 0.00 2.57
3282 3695 3.255725 CATTGCCTACAAGCCACAAATG 58.744 45.455 0.00 0.00 39.69 2.32
3283 3696 2.234414 CCATTGCCTACAAGCCACAAAT 59.766 45.455 0.00 0.00 39.69 2.32
3284 3697 1.617850 CCATTGCCTACAAGCCACAAA 59.382 47.619 0.00 0.00 39.69 2.83
3285 3698 1.255882 CCATTGCCTACAAGCCACAA 58.744 50.000 0.00 0.00 39.69 3.33
3296 3709 2.373335 TGGTTTGTGTACCATTGCCT 57.627 45.000 0.00 0.00 43.14 4.75
3327 3757 3.627577 GCACCATAGGTCACGAAATGATT 59.372 43.478 0.00 0.00 40.28 2.57
3345 3775 0.389426 CATGCCTGCAAAAGAGCACC 60.389 55.000 0.00 0.00 40.11 5.01
3788 4218 4.694760 ATGTCATGGATGCTGTAGCTAA 57.305 40.909 5.38 0.00 42.66 3.09
3789 4219 4.383173 CAATGTCATGGATGCTGTAGCTA 58.617 43.478 5.38 0.00 42.66 3.32
3794 4224 1.749063 CTGCAATGTCATGGATGCTGT 59.251 47.619 8.94 0.00 39.49 4.40
4070 4500 0.037232 CTTCCGGAACTGGTCACTCC 60.037 60.000 14.35 0.00 0.00 3.85
4077 4507 2.749621 CCAAATTCTCTTCCGGAACTGG 59.250 50.000 14.35 3.89 0.00 4.00
4089 4519 4.438744 CCACGTTCCTATTGCCAAATTCTC 60.439 45.833 0.00 0.00 0.00 2.87
4099 4529 2.403252 AGCCTTCCACGTTCCTATTG 57.597 50.000 0.00 0.00 0.00 1.90
4101 4531 1.628846 ACAAGCCTTCCACGTTCCTAT 59.371 47.619 0.00 0.00 0.00 2.57
4102 4532 1.053424 ACAAGCCTTCCACGTTCCTA 58.947 50.000 0.00 0.00 0.00 2.94
4105 4535 0.234884 CGAACAAGCCTTCCACGTTC 59.765 55.000 0.00 0.00 34.10 3.95
4110 4540 0.756294 TCTGTCGAACAAGCCTTCCA 59.244 50.000 0.00 0.00 0.00 3.53
4114 4544 4.273148 ACTAAATCTGTCGAACAAGCCT 57.727 40.909 0.00 0.00 0.00 4.58
4333 4766 0.831307 ACTAGAGGAACGGCCAATCC 59.169 55.000 14.65 14.65 40.02 3.01
4376 4809 8.494016 AATCTGCAGTACCTACAAACTAATTC 57.506 34.615 14.67 0.00 0.00 2.17
4379 4812 7.446769 TGAAATCTGCAGTACCTACAAACTAA 58.553 34.615 14.67 0.00 0.00 2.24
4424 4864 3.696281 TCTTTCACACGTCGTCAGTTA 57.304 42.857 0.00 0.00 0.00 2.24
4425 4865 2.572191 TCTTTCACACGTCGTCAGTT 57.428 45.000 0.00 0.00 0.00 3.16
4426 4866 2.794910 CAATCTTTCACACGTCGTCAGT 59.205 45.455 0.00 0.00 0.00 3.41
4427 4867 2.410262 GCAATCTTTCACACGTCGTCAG 60.410 50.000 0.00 0.00 0.00 3.51
4428 4868 1.525197 GCAATCTTTCACACGTCGTCA 59.475 47.619 0.00 0.00 0.00 4.35
4432 4873 3.228749 CACATGCAATCTTTCACACGTC 58.771 45.455 0.00 0.00 0.00 4.34
4497 4941 9.331282 GATCACTAGCTTTTGAGGTACATAATT 57.669 33.333 0.00 0.00 0.00 1.40
4509 4953 2.421424 GTGCAGGGATCACTAGCTTTTG 59.579 50.000 16.81 0.00 0.00 2.44
4558 5002 6.040729 CCATTGGCTGATAACATTCCACAATA 59.959 38.462 0.00 0.00 31.66 1.90
4578 5022 9.683069 GAAAAGTTGGAATATATACTGCCATTG 57.317 33.333 0.00 0.00 0.00 2.82
4598 5042 3.509442 TGAATGCATCCCCTTGAAAAGT 58.491 40.909 0.00 0.00 44.25 2.66
4599 5043 3.512724 ACTGAATGCATCCCCTTGAAAAG 59.487 43.478 0.00 0.00 45.69 2.27
4603 5047 4.209538 CAATACTGAATGCATCCCCTTGA 58.790 43.478 0.00 0.00 0.00 3.02
4717 5232 9.374838 GGAATGCATCTGTCTTGAAAAATAAAT 57.625 29.630 0.00 0.00 0.00 1.40
4718 5233 7.818930 GGGAATGCATCTGTCTTGAAAAATAAA 59.181 33.333 0.00 0.00 0.00 1.40
4727 5242 1.396653 GGGGGAATGCATCTGTCTTG 58.603 55.000 0.00 0.00 0.00 3.02
4753 5268 2.205022 AATGGCTGCTAGCTTGTTCA 57.795 45.000 17.23 11.33 41.99 3.18
4757 5272 1.671979 TGCTAATGGCTGCTAGCTTG 58.328 50.000 17.23 9.97 41.99 4.01
4767 5293 1.332997 GCTGTCAGACATGCTAATGGC 59.667 52.381 2.97 0.00 42.82 4.40
4768 5294 2.871022 GAGCTGTCAGACATGCTAATGG 59.129 50.000 20.79 3.37 38.19 3.16
4769 5295 2.538861 CGAGCTGTCAGACATGCTAATG 59.461 50.000 20.79 13.25 34.43 1.90
4770 5296 2.819115 CGAGCTGTCAGACATGCTAAT 58.181 47.619 20.79 6.32 34.43 1.73
4771 5297 1.737029 GCGAGCTGTCAGACATGCTAA 60.737 52.381 20.79 0.00 34.43 3.09
4772 5298 0.179127 GCGAGCTGTCAGACATGCTA 60.179 55.000 20.79 0.00 34.43 3.49
4814 5340 1.504912 ACTGGACCTGGATGAGATGG 58.495 55.000 0.00 0.00 0.00 3.51
5039 5582 2.736826 CCCTCCTTCCTTCCTCGCC 61.737 68.421 0.00 0.00 0.00 5.54
5044 5587 0.326713 AGCTACCCCTCCTTCCTTCC 60.327 60.000 0.00 0.00 0.00 3.46
5045 5588 0.833949 CAGCTACCCCTCCTTCCTTC 59.166 60.000 0.00 0.00 0.00 3.46
5046 5589 0.417841 TCAGCTACCCCTCCTTCCTT 59.582 55.000 0.00 0.00 0.00 3.36
5047 5590 0.417841 TTCAGCTACCCCTCCTTCCT 59.582 55.000 0.00 0.00 0.00 3.36
5052 5595 2.431419 GAGTAACTTCAGCTACCCCTCC 59.569 54.545 0.00 0.00 0.00 4.30
5151 5697 0.671781 CTGCGGAGAGGTTGGACTTG 60.672 60.000 0.00 0.00 0.00 3.16
5153 5699 1.228894 TCTGCGGAGAGGTTGGACT 60.229 57.895 0.98 0.00 0.00 3.85
5188 5734 6.017109 AGCACATCGAAAATGGTATTATCACC 60.017 38.462 0.00 0.00 39.20 4.02
5190 5736 6.513230 GCAGCACATCGAAAATGGTATTATCA 60.513 38.462 0.00 0.00 0.00 2.15
5191 5737 5.853282 GCAGCACATCGAAAATGGTATTATC 59.147 40.000 0.00 0.00 0.00 1.75
5197 5765 1.538047 AGCAGCACATCGAAAATGGT 58.462 45.000 0.00 0.00 0.00 3.55
5238 5811 1.325338 CACACAAAGCAAAGCAACAGC 59.675 47.619 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.