Multiple sequence alignment - TraesCS2B01G415000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G415000 chr2B 100.000 3125 0 0 1 3125 593019167 593016043 0.000000e+00 5771.0
1 TraesCS2B01G415000 chr2D 89.583 2544 146 56 662 3125 505842155 505839651 0.000000e+00 3120.0
2 TraesCS2B01G415000 chr2A 87.601 2218 111 74 659 2780 650260656 650258507 0.000000e+00 2422.0
3 TraesCS2B01G415000 chr2A 98.496 665 10 0 1 665 599160804 599161468 0.000000e+00 1173.0
4 TraesCS2B01G415000 chr2A 85.944 249 19 7 2882 3125 650258470 650258233 5.170000e-63 252.0
5 TraesCS2B01G415000 chr5B 98.496 665 10 0 1 665 54499631 54498967 0.000000e+00 1173.0
6 TraesCS2B01G415000 chr7B 98.206 669 12 0 1 669 252281274 252280606 0.000000e+00 1170.0
7 TraesCS2B01G415000 chr7B 98.494 664 9 1 1 664 584809908 584810570 0.000000e+00 1170.0
8 TraesCS2B01G415000 chr4A 98.492 663 10 0 1 663 60732928 60732266 0.000000e+00 1170.0
9 TraesCS2B01G415000 chr6B 98.489 662 10 0 1 662 544568951 544569612 0.000000e+00 1168.0
10 TraesCS2B01G415000 chr1B 98.489 662 10 0 1 662 198579496 198578835 0.000000e+00 1168.0
11 TraesCS2B01G415000 chr3B 98.341 663 11 0 1 663 274894063 274894725 0.000000e+00 1164.0
12 TraesCS2B01G415000 chr5A 98.195 665 12 0 1 665 44125377 44126041 0.000000e+00 1162.0
13 TraesCS2B01G415000 chr6A 73.600 375 68 23 1002 1365 480310349 480310703 7.080000e-22 115.0
14 TraesCS2B01G415000 chr6D 82.353 102 18 0 1264 1365 340212627 340212728 4.290000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G415000 chr2B 593016043 593019167 3124 True 5771 5771 100.0000 1 3125 1 chr2B.!!$R1 3124
1 TraesCS2B01G415000 chr2D 505839651 505842155 2504 True 3120 3120 89.5830 662 3125 1 chr2D.!!$R1 2463
2 TraesCS2B01G415000 chr2A 650258233 650260656 2423 True 1337 2422 86.7725 659 3125 2 chr2A.!!$R1 2466
3 TraesCS2B01G415000 chr2A 599160804 599161468 664 False 1173 1173 98.4960 1 665 1 chr2A.!!$F1 664
4 TraesCS2B01G415000 chr5B 54498967 54499631 664 True 1173 1173 98.4960 1 665 1 chr5B.!!$R1 664
5 TraesCS2B01G415000 chr7B 252280606 252281274 668 True 1170 1170 98.2060 1 669 1 chr7B.!!$R1 668
6 TraesCS2B01G415000 chr7B 584809908 584810570 662 False 1170 1170 98.4940 1 664 1 chr7B.!!$F1 663
7 TraesCS2B01G415000 chr4A 60732266 60732928 662 True 1170 1170 98.4920 1 663 1 chr4A.!!$R1 662
8 TraesCS2B01G415000 chr6B 544568951 544569612 661 False 1168 1168 98.4890 1 662 1 chr6B.!!$F1 661
9 TraesCS2B01G415000 chr1B 198578835 198579496 661 True 1168 1168 98.4890 1 662 1 chr1B.!!$R1 661
10 TraesCS2B01G415000 chr3B 274894063 274894725 662 False 1164 1164 98.3410 1 663 1 chr3B.!!$F1 662
11 TraesCS2B01G415000 chr5A 44125377 44126041 664 False 1162 1162 98.1950 1 665 1 chr5A.!!$F1 664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.111061 TTGCAGTGAACCTGGATGCT 59.889 50.0 0.00 0.00 41.58 3.79 F
893 914 0.620030 ACCATATGCCACTGTGAGCA 59.380 50.0 20.68 20.68 44.45 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1616 1641 1.347817 GAAGTGCGCGTCTCCTTCTG 61.348 60.0 8.43 0.0 32.49 3.02 R
2834 3005 0.034574 TGTGAGTGTGGGTGCAGTTT 60.035 50.0 0.00 0.0 0.00 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 0.111061 TTGCAGTGAACCTGGATGCT 59.889 50.000 0.00 0.00 41.58 3.79
118 119 1.133513 TGGTGTGCTTGATTGGGTTCT 60.134 47.619 0.00 0.00 0.00 3.01
205 206 1.544825 CCCTCGAGGAGCAAGGACAA 61.545 60.000 33.39 0.00 38.24 3.18
213 214 0.886563 GAGCAAGGACAATGCAAGCT 59.113 50.000 0.00 0.00 46.22 3.74
228 229 3.721706 GCTGCAGCAGGGGGTAGT 61.722 66.667 33.36 0.00 41.59 2.73
549 550 8.755018 CGGTGAAATTTCCTAATATTTGATTGC 58.245 33.333 15.48 0.00 0.00 3.56
786 791 2.399217 CGTGCGTACGCGGTAGTA 59.601 61.111 32.65 13.62 45.93 1.82
893 914 0.620030 ACCATATGCCACTGTGAGCA 59.380 50.000 20.68 20.68 44.45 4.26
1515 1540 2.747686 GTCCAAGAAGGCCACGGA 59.252 61.111 5.01 0.00 37.29 4.69
1616 1641 0.598419 GTTGACAAAGCCAGCAAGCC 60.598 55.000 0.00 0.00 0.00 4.35
1623 1648 2.034687 GCCAGCAAGCCAGAAGGA 59.965 61.111 0.00 0.00 36.89 3.36
1710 1735 2.482333 CGCGAAGACCGAGGAGGAT 61.482 63.158 0.00 0.00 45.00 3.24
1716 1744 4.616373 GCGAAGACCGAGGAGGATAATAAG 60.616 50.000 0.00 0.00 45.00 1.73
2130 2203 2.049526 TGGCGCGTGTAGTGACAG 60.050 61.111 8.43 0.00 44.78 3.51
2177 2274 6.681777 ACAATGTAGATTGCTTCCAAGAAAC 58.318 36.000 12.27 0.00 42.54 2.78
2211 2316 4.441634 GGCTGATAACACGAATCTACCTGT 60.442 45.833 0.00 0.00 0.00 4.00
2259 2370 3.980646 TTTCGTTTGAATGTCCACTGG 57.019 42.857 0.00 0.00 33.20 4.00
2268 2379 2.591715 GTCCACTGGCACGCACTT 60.592 61.111 0.00 0.00 0.00 3.16
2297 2409 4.562963 GCTACCAGTACTACTGCCACTTTT 60.563 45.833 10.36 0.00 44.63 2.27
2298 2410 4.432980 ACCAGTACTACTGCCACTTTTT 57.567 40.909 10.36 0.00 44.63 1.94
2350 2466 1.771073 TTTTGCGACACGTCTGGCAG 61.771 55.000 8.58 8.58 36.66 4.85
2573 2707 0.988832 GTTATGGGTGTGGTGGAGGA 59.011 55.000 0.00 0.00 0.00 3.71
2583 2717 4.035102 GTGGAGGAGGTGGGTGCC 62.035 72.222 0.00 0.00 0.00 5.01
2645 2787 0.820226 CGAGAGGAACCTGCTGATGA 59.180 55.000 0.00 0.00 0.00 2.92
2708 2856 4.767409 GGAAATGCCAAGACTTTAACTCCT 59.233 41.667 0.00 0.00 36.34 3.69
2733 2881 1.668151 GCAAAGCTTCCGTCTCCGT 60.668 57.895 0.00 0.00 0.00 4.69
2789 2937 4.386245 GCTTGACGCCTACTCGAG 57.614 61.111 11.84 11.84 0.00 4.04
2802 2973 4.886247 CTACTCGAGTAGGAGTTTCAGG 57.114 50.000 35.19 14.05 44.65 3.86
2803 2974 3.436577 ACTCGAGTAGGAGTTTCAGGA 57.563 47.619 18.46 0.00 44.65 3.86
2807 2978 3.757493 TCGAGTAGGAGTTTCAGGAGTTC 59.243 47.826 0.00 0.00 0.00 3.01
2811 2982 6.441088 AGTAGGAGTTTCAGGAGTTCAATT 57.559 37.500 0.00 0.00 0.00 2.32
2812 2983 6.234177 AGTAGGAGTTTCAGGAGTTCAATTG 58.766 40.000 0.00 0.00 0.00 2.32
2813 2984 5.053978 AGGAGTTTCAGGAGTTCAATTGT 57.946 39.130 5.13 0.00 0.00 2.71
2814 2985 4.823989 AGGAGTTTCAGGAGTTCAATTGTG 59.176 41.667 5.13 0.00 0.00 3.33
2815 2986 4.540824 GAGTTTCAGGAGTTCAATTGTGC 58.459 43.478 5.13 0.00 0.00 4.57
2816 2987 3.953612 AGTTTCAGGAGTTCAATTGTGCA 59.046 39.130 5.13 0.00 0.00 4.57
2817 2988 4.037208 AGTTTCAGGAGTTCAATTGTGCAG 59.963 41.667 5.13 0.00 0.00 4.41
2818 2989 3.490439 TCAGGAGTTCAATTGTGCAGA 57.510 42.857 5.13 0.00 0.00 4.26
2819 2990 4.025040 TCAGGAGTTCAATTGTGCAGAT 57.975 40.909 5.13 0.00 0.00 2.90
2820 2991 5.164620 TCAGGAGTTCAATTGTGCAGATA 57.835 39.130 5.13 0.00 0.00 1.98
2821 2992 5.748402 TCAGGAGTTCAATTGTGCAGATAT 58.252 37.500 5.13 0.00 0.00 1.63
2822 2993 6.888105 TCAGGAGTTCAATTGTGCAGATATA 58.112 36.000 5.13 0.00 0.00 0.86
2823 2994 7.337938 TCAGGAGTTCAATTGTGCAGATATAA 58.662 34.615 5.13 0.00 0.00 0.98
2824 2995 7.828717 TCAGGAGTTCAATTGTGCAGATATAAA 59.171 33.333 5.13 0.00 0.00 1.40
2825 2996 8.627403 CAGGAGTTCAATTGTGCAGATATAAAT 58.373 33.333 5.13 0.00 0.00 1.40
2826 2997 8.627403 AGGAGTTCAATTGTGCAGATATAAATG 58.373 33.333 5.13 0.00 0.00 2.32
2827 2998 7.864379 GGAGTTCAATTGTGCAGATATAAATGG 59.136 37.037 5.13 0.00 0.00 3.16
2828 2999 8.297470 AGTTCAATTGTGCAGATATAAATGGT 57.703 30.769 5.13 0.00 0.00 3.55
2829 3000 8.408601 AGTTCAATTGTGCAGATATAAATGGTC 58.591 33.333 5.13 0.00 0.00 4.02
2830 3001 7.275888 TCAATTGTGCAGATATAAATGGTCC 57.724 36.000 5.13 0.00 0.00 4.46
2831 3002 5.947228 ATTGTGCAGATATAAATGGTCCG 57.053 39.130 0.00 0.00 0.00 4.79
2832 3003 4.415881 TGTGCAGATATAAATGGTCCGT 57.584 40.909 0.00 0.00 0.00 4.69
2833 3004 4.126437 TGTGCAGATATAAATGGTCCGTG 58.874 43.478 0.00 0.00 0.00 4.94
2834 3005 4.141824 TGTGCAGATATAAATGGTCCGTGA 60.142 41.667 0.00 0.00 0.00 4.35
2835 3006 4.814234 GTGCAGATATAAATGGTCCGTGAA 59.186 41.667 0.00 0.00 0.00 3.18
2836 3007 5.295787 GTGCAGATATAAATGGTCCGTGAAA 59.704 40.000 0.00 0.00 0.00 2.69
2837 3008 5.295787 TGCAGATATAAATGGTCCGTGAAAC 59.704 40.000 0.00 0.00 0.00 2.78
2854 3025 0.748005 AACTGCACCCACACTCACAC 60.748 55.000 0.00 0.00 0.00 3.82
2856 3027 0.464373 CTGCACCCACACTCACACTT 60.464 55.000 0.00 0.00 0.00 3.16
2857 3028 0.463654 TGCACCCACACTCACACTTC 60.464 55.000 0.00 0.00 0.00 3.01
2868 3047 2.301296 ACTCACACTTCTGATGGTCAGG 59.699 50.000 7.08 0.00 44.39 3.86
2877 3056 5.426833 ACTTCTGATGGTCAGGTAAAGCTAT 59.573 40.000 7.08 0.00 44.39 2.97
2878 3057 6.611642 ACTTCTGATGGTCAGGTAAAGCTATA 59.388 38.462 7.08 0.00 44.39 1.31
2880 3059 5.011125 TCTGATGGTCAGGTAAAGCTATAGC 59.989 44.000 17.33 17.33 44.39 2.97
2911 3105 0.110104 AGCCCTGCCTTATCTGCATC 59.890 55.000 0.00 0.00 38.22 3.91
2916 3110 0.394192 TGCCTTATCTGCATCGGGAG 59.606 55.000 0.00 0.00 32.85 4.30
2932 3126 2.814097 CGGGAGGAATGGTTCTTGTTGT 60.814 50.000 0.00 0.00 0.00 3.32
2935 3129 4.262036 GGGAGGAATGGTTCTTGTTGTTTC 60.262 45.833 0.00 0.00 0.00 2.78
2946 3140 1.313772 TGTTGTTTCATCACGTGGGG 58.686 50.000 17.00 8.39 0.00 4.96
2977 3175 0.670854 GGACACGGAGAGAACAAGCC 60.671 60.000 0.00 0.00 0.00 4.35
2982 3180 1.446272 GGAGAGAACAAGCCCGTCG 60.446 63.158 0.00 0.00 0.00 5.12
2983 3181 1.446272 GAGAGAACAAGCCCGTCGG 60.446 63.158 3.60 3.60 0.00 4.79
3035 3238 4.752879 CAACGCCGGTCCGTCCAT 62.753 66.667 11.06 0.00 41.16 3.41
3036 3239 4.446413 AACGCCGGTCCGTCCATC 62.446 66.667 11.06 0.00 41.16 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.820519 GATCCACAAATCAGGCTTGCA 59.179 47.619 0.00 0.00 0.00 4.08
118 119 1.064463 GGAGGCCACATTCTTCCATGA 60.064 52.381 5.01 0.00 0.00 3.07
213 214 2.757145 TACCACTACCCCCTGCTGCA 62.757 60.000 0.88 0.88 0.00 4.41
228 229 0.647738 ATCCCTCCCCACATCTACCA 59.352 55.000 0.00 0.00 0.00 3.25
549 550 4.636206 GGGGTGCTCTAATTAGAAACACAG 59.364 45.833 30.48 16.58 39.42 3.66
613 614 7.709182 GCCACGGGCTCTTTAAAATTTATAATT 59.291 33.333 7.58 0.00 46.69 1.40
772 777 0.650512 TGTAGTACTACCGCGTACGC 59.349 55.000 29.83 29.83 43.42 4.42
782 787 6.929475 TGCGTCGCATGTACATGTAGTACTA 61.929 44.000 31.10 13.86 42.84 1.82
786 791 1.135228 TGCGTCGCATGTACATGTAGT 60.135 47.619 31.10 0.00 40.80 2.73
893 914 0.673985 TATATCGCAGAACGCTGGCT 59.326 50.000 0.00 0.00 43.58 4.75
901 922 1.508632 GCGGCCTTTATATCGCAGAA 58.491 50.000 0.00 0.00 46.33 3.02
1498 1523 1.376037 CTCCGTGGCCTTCTTGGAC 60.376 63.158 3.32 0.00 46.75 4.02
1616 1641 1.347817 GAAGTGCGCGTCTCCTTCTG 61.348 60.000 8.43 0.00 32.49 3.02
1684 1709 4.856607 GGTCTTCGCGCTCCGGAG 62.857 72.222 27.83 27.83 44.20 4.63
1710 1735 6.590292 CGTCTTCTTTGCTCTTGGACTTATTA 59.410 38.462 0.00 0.00 0.00 0.98
1716 1744 2.734079 CTCGTCTTCTTTGCTCTTGGAC 59.266 50.000 0.00 0.00 0.00 4.02
1980 2023 4.082523 AGGATGGCGTCGTGGTGG 62.083 66.667 0.30 0.00 0.00 4.61
2211 2316 1.144708 TGCTGGATGAACAAGGGACAA 59.855 47.619 0.00 0.00 0.00 3.18
2285 2396 5.689383 CTAGAAAGCAAAAAGTGGCAGTA 57.311 39.130 0.00 0.00 0.00 2.74
2350 2466 1.079057 GCTCTCACGGGGTTCTTCC 60.079 63.158 0.00 0.00 0.00 3.46
2708 2856 2.258013 CGGAAGCTTTGCGGTGGAA 61.258 57.895 0.00 0.00 41.03 3.53
2781 2929 4.515361 TCCTGAAACTCCTACTCGAGTAG 58.485 47.826 35.62 35.62 42.35 2.57
2784 2932 3.349022 ACTCCTGAAACTCCTACTCGAG 58.651 50.000 11.84 11.84 35.88 4.04
2785 2933 3.436577 ACTCCTGAAACTCCTACTCGA 57.563 47.619 0.00 0.00 0.00 4.04
2786 2934 3.506455 TGAACTCCTGAAACTCCTACTCG 59.494 47.826 0.00 0.00 0.00 4.18
2787 2935 5.470047 TTGAACTCCTGAAACTCCTACTC 57.530 43.478 0.00 0.00 0.00 2.59
2789 2937 5.998363 ACAATTGAACTCCTGAAACTCCTAC 59.002 40.000 13.59 0.00 0.00 3.18
2795 2966 4.036734 TCTGCACAATTGAACTCCTGAAAC 59.963 41.667 13.59 0.00 0.00 2.78
2802 2973 8.408601 ACCATTTATATCTGCACAATTGAACTC 58.591 33.333 13.59 0.00 0.00 3.01
2803 2974 8.297470 ACCATTTATATCTGCACAATTGAACT 57.703 30.769 13.59 0.00 0.00 3.01
2807 2978 6.144854 CGGACCATTTATATCTGCACAATTG 58.855 40.000 3.24 3.24 0.00 2.32
2811 2982 4.126437 CACGGACCATTTATATCTGCACA 58.874 43.478 0.00 0.00 0.00 4.57
2812 2983 4.377021 TCACGGACCATTTATATCTGCAC 58.623 43.478 0.00 0.00 0.00 4.57
2813 2984 4.681074 TCACGGACCATTTATATCTGCA 57.319 40.909 0.00 0.00 0.00 4.41
2814 2985 5.527582 AGTTTCACGGACCATTTATATCTGC 59.472 40.000 0.00 0.00 0.00 4.26
2815 2986 6.511767 GCAGTTTCACGGACCATTTATATCTG 60.512 42.308 0.00 0.00 0.00 2.90
2816 2987 5.527582 GCAGTTTCACGGACCATTTATATCT 59.472 40.000 0.00 0.00 0.00 1.98
2817 2988 5.295787 TGCAGTTTCACGGACCATTTATATC 59.704 40.000 0.00 0.00 0.00 1.63
2818 2989 5.065988 GTGCAGTTTCACGGACCATTTATAT 59.934 40.000 0.00 0.00 0.00 0.86
2819 2990 4.393680 GTGCAGTTTCACGGACCATTTATA 59.606 41.667 0.00 0.00 0.00 0.98
2820 2991 3.190535 GTGCAGTTTCACGGACCATTTAT 59.809 43.478 0.00 0.00 0.00 1.40
2821 2992 2.550606 GTGCAGTTTCACGGACCATTTA 59.449 45.455 0.00 0.00 0.00 1.40
2822 2993 1.336755 GTGCAGTTTCACGGACCATTT 59.663 47.619 0.00 0.00 0.00 2.32
2823 2994 0.951558 GTGCAGTTTCACGGACCATT 59.048 50.000 0.00 0.00 0.00 3.16
2824 2995 0.889186 GGTGCAGTTTCACGGACCAT 60.889 55.000 0.00 0.00 37.83 3.55
2825 2996 1.525077 GGTGCAGTTTCACGGACCA 60.525 57.895 0.00 0.00 37.83 4.02
2826 2997 2.258726 GGGTGCAGTTTCACGGACC 61.259 63.158 0.00 0.00 37.83 4.46
2827 2998 1.525077 TGGGTGCAGTTTCACGGAC 60.525 57.895 0.00 0.00 37.83 4.79
2828 2999 1.525077 GTGGGTGCAGTTTCACGGA 60.525 57.895 0.00 0.00 37.83 4.69
2829 3000 1.821759 TGTGGGTGCAGTTTCACGG 60.822 57.895 0.00 0.00 37.83 4.94
2830 3001 1.095228 AGTGTGGGTGCAGTTTCACG 61.095 55.000 0.00 0.00 37.83 4.35
2831 3002 0.663153 GAGTGTGGGTGCAGTTTCAC 59.337 55.000 0.00 0.00 36.28 3.18
2832 3003 0.254462 TGAGTGTGGGTGCAGTTTCA 59.746 50.000 0.00 0.00 0.00 2.69
2833 3004 0.663153 GTGAGTGTGGGTGCAGTTTC 59.337 55.000 0.00 0.00 0.00 2.78
2834 3005 0.034574 TGTGAGTGTGGGTGCAGTTT 60.035 50.000 0.00 0.00 0.00 2.66
2835 3006 0.748005 GTGTGAGTGTGGGTGCAGTT 60.748 55.000 0.00 0.00 0.00 3.16
2836 3007 1.153168 GTGTGAGTGTGGGTGCAGT 60.153 57.895 0.00 0.00 0.00 4.40
2837 3008 0.464373 AAGTGTGAGTGTGGGTGCAG 60.464 55.000 0.00 0.00 0.00 4.41
2854 3025 8.215891 GCTATAGCTTTACCTGACCATCAGAAG 61.216 44.444 17.75 4.74 41.50 2.85
2856 3027 5.011125 GCTATAGCTTTACCTGACCATCAGA 59.989 44.000 17.75 0.00 41.50 3.27
2857 3028 5.233988 GCTATAGCTTTACCTGACCATCAG 58.766 45.833 17.75 0.00 40.00 2.90
2911 3105 1.812571 CAACAAGAACCATTCCTCCCG 59.187 52.381 0.00 0.00 0.00 5.14
2916 3110 5.691754 GTGATGAAACAACAAGAACCATTCC 59.308 40.000 0.00 0.00 0.00 3.01
2932 3126 1.074072 CCACCCCCACGTGATGAAA 59.926 57.895 19.30 0.00 35.68 2.69
2935 3129 2.046314 GACCACCCCCACGTGATG 60.046 66.667 19.30 7.64 35.68 3.07
2946 3140 2.813908 GTGTCCGCATCGACCACC 60.814 66.667 0.00 0.00 31.35 4.61
2987 3185 3.350909 TTCGATCCCGTGGCTCGTG 62.351 63.158 13.37 0.00 37.94 4.35
2988 3186 3.064987 CTTCGATCCCGTGGCTCGT 62.065 63.158 13.37 0.00 37.94 4.18
2989 3187 2.278857 CTTCGATCCCGTGGCTCG 60.279 66.667 9.12 9.12 37.05 5.03
2990 3188 1.066587 CTCTTCGATCCCGTGGCTC 59.933 63.158 0.00 0.00 37.05 4.70
2991 3189 0.970937 TTCTCTTCGATCCCGTGGCT 60.971 55.000 0.00 0.00 37.05 4.75
2992 3190 0.528684 CTTCTCTTCGATCCCGTGGC 60.529 60.000 0.00 0.00 37.05 5.01
2993 3191 1.066303 CTCTTCTCTTCGATCCCGTGG 59.934 57.143 0.00 0.00 37.05 4.94
3030 3233 2.046285 CGGCCCAAACTGGATGGAC 61.046 63.158 0.00 0.00 40.96 4.02
3034 3237 2.355115 GGACGGCCCAAACTGGAT 59.645 61.111 0.00 0.00 40.96 3.41
3078 3281 3.807538 GGCACATCAGCTGCGGTG 61.808 66.667 24.63 24.63 35.31 4.94
3079 3282 4.334118 TGGCACATCAGCTGCGGT 62.334 61.111 9.47 6.55 35.31 5.68
3080 3283 3.506096 CTGGCACATCAGCTGCGG 61.506 66.667 9.47 5.83 38.20 5.69
3081 3284 1.020861 TAACTGGCACATCAGCTGCG 61.021 55.000 9.47 5.02 38.20 5.18
3082 3285 0.731417 CTAACTGGCACATCAGCTGC 59.269 55.000 9.47 0.00 38.20 5.25
3083 3286 2.105006 ACTAACTGGCACATCAGCTG 57.895 50.000 7.63 7.63 38.20 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.