Multiple sequence alignment - TraesCS2B01G414800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G414800 chr2B 100.000 4210 0 0 1 4210 592801019 592805228 0.000000e+00 7775.0
1 TraesCS2B01G414800 chr2A 91.033 3803 201 60 127 3823 650242715 650246483 0.000000e+00 5005.0
2 TraesCS2B01G414800 chr2D 92.240 3621 142 45 228 3802 505813710 505817237 0.000000e+00 5001.0
3 TraesCS2B01G414800 chr2D 85.714 224 13 10 3 220 505813426 505813636 7.090000e-53 219.0
4 TraesCS2B01G414800 chr2D 94.505 91 5 0 4120 4210 505824050 505824140 1.580000e-29 141.0
5 TraesCS2B01G414800 chr3B 94.012 167 10 0 3952 4118 738296596 738296430 1.940000e-63 254.0
6 TraesCS2B01G414800 chr3B 90.854 164 11 3 3947 4109 65236330 65236490 2.550000e-52 217.0
7 TraesCS2B01G414800 chr3B 81.579 114 15 5 1048 1158 99500818 99500928 5.800000e-14 89.8
8 TraesCS2B01G414800 chr1B 90.419 167 16 0 3952 4118 553013629 553013463 1.970000e-53 220.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G414800 chr2B 592801019 592805228 4209 False 7775 7775 100.000 1 4210 1 chr2B.!!$F1 4209
1 TraesCS2B01G414800 chr2A 650242715 650246483 3768 False 5005 5005 91.033 127 3823 1 chr2A.!!$F1 3696
2 TraesCS2B01G414800 chr2D 505813426 505817237 3811 False 2610 5001 88.977 3 3802 2 chr2D.!!$F2 3799

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
746 840 0.036858 GAGTGCTGTCCCTTGACCTC 60.037 60.0 0.0 0.0 41.01 3.85 F
887 989 0.536460 TCCCTTTCAAGCCCACGAAC 60.536 55.0 0.0 0.0 0.00 3.95 F
1931 2061 0.759346 AGCTTTTCAGTCTCCGTGGT 59.241 50.0 0.0 0.0 0.00 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1771 1897 1.001974 CCGGGTCTGTGATTGACTTGA 59.998 52.381 0.0 0.0 35.04 3.02 R
2153 2288 1.880027 GGCCTGATGAAACAACTCGTT 59.120 47.619 0.0 0.0 40.50 3.85 R
3671 3847 0.296056 GGTAGTAGTCGTCGTCGTCG 59.704 60.000 5.5 5.5 38.33 5.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 5.684184 GCAAAAAGAGTTAAAAACGGTCGAT 59.316 36.000 0.00 0.00 36.23 3.59
32 33 5.840940 AAGAGTTAAAAACGGTCGATCAG 57.159 39.130 0.00 0.00 36.23 2.90
41 42 1.743958 ACGGTCGATCAGAAGTACAGG 59.256 52.381 0.00 0.00 0.00 4.00
48 49 3.181530 CGATCAGAAGTACAGGCAAAACG 60.182 47.826 0.00 0.00 0.00 3.60
49 50 3.188159 TCAGAAGTACAGGCAAAACGT 57.812 42.857 0.00 0.00 0.00 3.99
57 58 6.628919 AGTACAGGCAAAACGTAGAAAATT 57.371 33.333 0.00 0.00 0.00 1.82
61 62 7.688478 ACAGGCAAAACGTAGAAAATTAAAC 57.312 32.000 0.00 0.00 0.00 2.01
62 63 6.415573 ACAGGCAAAACGTAGAAAATTAAACG 59.584 34.615 0.00 0.00 40.99 3.60
63 64 6.633634 CAGGCAAAACGTAGAAAATTAAACGA 59.366 34.615 2.37 0.00 38.64 3.85
64 65 7.325097 CAGGCAAAACGTAGAAAATTAAACGAT 59.675 33.333 2.37 0.00 38.64 3.73
65 66 8.505625 AGGCAAAACGTAGAAAATTAAACGATA 58.494 29.630 2.37 0.00 38.64 2.92
66 67 8.569683 GGCAAAACGTAGAAAATTAAACGATAC 58.430 33.333 2.37 0.00 38.64 2.24
67 68 9.321590 GCAAAACGTAGAAAATTAAACGATACT 57.678 29.630 2.37 0.00 38.64 2.12
121 125 1.454111 GCTAGAGCGTGGAGGAGGA 60.454 63.158 0.00 0.00 0.00 3.71
122 126 1.452145 GCTAGAGCGTGGAGGAGGAG 61.452 65.000 0.00 0.00 0.00 3.69
123 127 0.821711 CTAGAGCGTGGAGGAGGAGG 60.822 65.000 0.00 0.00 0.00 4.30
124 128 2.285889 TAGAGCGTGGAGGAGGAGGG 62.286 65.000 0.00 0.00 0.00 4.30
125 129 4.787280 AGCGTGGAGGAGGAGGGG 62.787 72.222 0.00 0.00 0.00 4.79
163 170 2.036346 GCCAAATTGCAGACCAGTTTCT 59.964 45.455 0.00 0.00 31.83 2.52
169 176 1.419762 TGCAGACCAGTTTCTAGGCAA 59.580 47.619 0.00 0.00 0.00 4.52
175 182 5.241506 CAGACCAGTTTCTAGGCAAATTCAA 59.758 40.000 0.00 0.00 0.00 2.69
220 230 4.670227 AATTAACTGCTGCTTTCTCGAC 57.330 40.909 0.00 0.00 0.00 4.20
221 231 2.812358 TAACTGCTGCTTTCTCGACA 57.188 45.000 0.00 0.00 0.00 4.35
223 233 0.941463 ACTGCTGCTTTCTCGACACG 60.941 55.000 0.00 0.00 0.00 4.49
224 234 0.664466 CTGCTGCTTTCTCGACACGA 60.664 55.000 0.00 0.00 0.00 4.35
442 525 1.324740 ATGGGTACGCTCGCCTGTTA 61.325 55.000 11.59 0.00 0.00 2.41
445 528 0.801067 GGTACGCTCGCCTGTTAGTG 60.801 60.000 0.00 0.00 0.00 2.74
520 603 2.771089 GCCTTGGATCGCAGATATTCA 58.229 47.619 0.00 0.00 45.12 2.57
591 683 1.000521 TAGAAGGAAGGACGGGCGA 60.001 57.895 0.00 0.00 0.00 5.54
746 840 0.036858 GAGTGCTGTCCCTTGACCTC 60.037 60.000 0.00 0.00 41.01 3.85
798 900 6.763610 GCCGCTAAGAATCTATAAATAGGCAT 59.236 38.462 0.00 0.00 38.30 4.40
838 940 2.015726 ATCTCCCTCCCTCCCTCGT 61.016 63.158 0.00 0.00 0.00 4.18
873 975 2.646798 AGAAGCTTCACCAATCTCCCTT 59.353 45.455 27.57 0.00 0.00 3.95
874 976 3.075134 AGAAGCTTCACCAATCTCCCTTT 59.925 43.478 27.57 0.00 0.00 3.11
880 982 1.821136 CACCAATCTCCCTTTCAAGCC 59.179 52.381 0.00 0.00 0.00 4.35
883 985 1.821136 CAATCTCCCTTTCAAGCCCAC 59.179 52.381 0.00 0.00 0.00 4.61
887 989 0.536460 TCCCTTTCAAGCCCACGAAC 60.536 55.000 0.00 0.00 0.00 3.95
928 1035 2.617532 GCAGAACATTCTTGGCCTCTCT 60.618 50.000 3.32 0.00 34.74 3.10
929 1036 3.683802 CAGAACATTCTTGGCCTCTCTT 58.316 45.455 3.32 0.00 34.74 2.85
930 1037 3.688673 CAGAACATTCTTGGCCTCTCTTC 59.311 47.826 3.32 0.00 34.74 2.87
932 1039 4.042684 AGAACATTCTTGGCCTCTCTTCTT 59.957 41.667 3.32 0.00 32.55 2.52
933 1040 3.683802 ACATTCTTGGCCTCTCTTCTTG 58.316 45.455 3.32 0.00 0.00 3.02
945 1054 4.280677 CCTCTCTTCTTGTCTGTCTCTGTT 59.719 45.833 0.00 0.00 0.00 3.16
948 1057 5.360999 TCTCTTCTTGTCTGTCTCTGTTTCA 59.639 40.000 0.00 0.00 0.00 2.69
949 1058 5.352284 TCTTCTTGTCTGTCTCTGTTTCAC 58.648 41.667 0.00 0.00 0.00 3.18
954 1063 3.643320 TGTCTGTCTCTGTTTCACCTCAT 59.357 43.478 0.00 0.00 0.00 2.90
956 1065 3.259374 TCTGTCTCTGTTTCACCTCATCC 59.741 47.826 0.00 0.00 0.00 3.51
957 1066 2.972021 TGTCTCTGTTTCACCTCATCCA 59.028 45.455 0.00 0.00 0.00 3.41
958 1067 3.584406 TGTCTCTGTTTCACCTCATCCAT 59.416 43.478 0.00 0.00 0.00 3.41
959 1068 4.187694 GTCTCTGTTTCACCTCATCCATC 58.812 47.826 0.00 0.00 0.00 3.51
960 1069 3.118992 TCTCTGTTTCACCTCATCCATCG 60.119 47.826 0.00 0.00 0.00 3.84
961 1070 2.831526 TCTGTTTCACCTCATCCATCGA 59.168 45.455 0.00 0.00 0.00 3.59
962 1071 3.452264 TCTGTTTCACCTCATCCATCGAT 59.548 43.478 0.00 0.00 0.00 3.59
963 1072 3.797039 TGTTTCACCTCATCCATCGATC 58.203 45.455 0.00 0.00 0.00 3.69
964 1073 3.452264 TGTTTCACCTCATCCATCGATCT 59.548 43.478 0.00 0.00 0.00 2.75
965 1074 4.080919 TGTTTCACCTCATCCATCGATCTT 60.081 41.667 0.00 0.00 0.00 2.40
972 1081 5.184864 ACCTCATCCATCGATCTTTAGCTAG 59.815 44.000 0.00 0.00 0.00 3.42
974 1083 4.769488 TCATCCATCGATCTTTAGCTAGCT 59.231 41.667 23.12 23.12 0.00 3.32
977 1086 4.022762 TCCATCGATCTTTAGCTAGCTGAC 60.023 45.833 27.68 6.15 0.00 3.51
982 1091 3.101643 TCTTTAGCTAGCTGACCCTCA 57.898 47.619 27.68 1.70 0.00 3.86
983 1092 3.647636 TCTTTAGCTAGCTGACCCTCAT 58.352 45.455 27.68 0.00 0.00 2.90
985 1094 4.830046 TCTTTAGCTAGCTGACCCTCATAG 59.170 45.833 27.68 11.24 0.00 2.23
989 1098 2.243810 CTAGCTGACCCTCATAGACCC 58.756 57.143 0.00 0.00 0.00 4.46
1164 1273 1.424493 GCCTCGCCGAGAATCAAGTG 61.424 60.000 17.19 0.00 33.17 3.16
1400 1520 1.735920 GACAGGTGAGCTCAGCACG 60.736 63.158 38.89 31.63 46.03 5.34
1406 1526 2.666190 GAGCTCAGCACGCACCAA 60.666 61.111 9.40 0.00 0.00 3.67
1410 1530 2.124942 TCAGCACGCACCAACACA 60.125 55.556 0.00 0.00 0.00 3.72
1661 1783 4.443266 ACGCTCGCCTTCTGCCTC 62.443 66.667 0.00 0.00 36.24 4.70
1768 1894 2.725312 ATGTCCGCCTCTCGTGCAT 61.725 57.895 0.00 0.00 36.19 3.96
1771 1897 2.434884 CCGCCTCTCGTGCATGTT 60.435 61.111 5.68 0.00 36.19 2.71
1772 1898 2.456119 CCGCCTCTCGTGCATGTTC 61.456 63.158 5.68 0.00 36.19 3.18
1815 1941 5.941948 AAATCGGGTCAAAACTTAGACAG 57.058 39.130 0.00 0.00 36.50 3.51
1819 1945 3.120199 CGGGTCAAAACTTAGACAGCATG 60.120 47.826 0.00 0.00 46.00 4.06
1930 2060 1.151668 CAGCTTTTCAGTCTCCGTGG 58.848 55.000 0.00 0.00 0.00 4.94
1931 2061 0.759346 AGCTTTTCAGTCTCCGTGGT 59.241 50.000 0.00 0.00 0.00 4.16
1973 2105 5.014123 TGGATCCTAGTTCTTGGTTTCATGT 59.986 40.000 14.23 0.00 0.00 3.21
2035 2167 1.295423 GCAGCCGGTCTGGTCTTTA 59.705 57.895 22.05 0.00 43.06 1.85
2050 2182 6.094881 TCTGGTCTTTAGTGACTTTTTGGTTG 59.905 38.462 0.00 0.00 37.16 3.77
2131 2263 7.514721 TCAAAAGGAGTAAAGATACACAAGGT 58.485 34.615 0.00 0.00 34.29 3.50
2138 2273 8.028938 GGAGTAAAGATACACAAGGTAACGTAA 58.971 37.037 0.00 0.00 36.55 3.18
2471 2608 2.905807 CGAGATCTACGCGGGGTCC 61.906 68.421 12.47 2.46 38.09 4.46
2736 2873 2.227757 TTCATGGCCCGGTTCCTGA 61.228 57.895 0.00 4.61 0.00 3.86
2789 2926 2.967397 CTGTTCACGTCGGGGCTA 59.033 61.111 0.00 0.00 0.00 3.93
2955 3092 2.315386 GGGACGTCGTTTCACTGCC 61.315 63.158 9.92 0.00 0.00 4.85
3022 3159 4.738998 CATGGGGGTGGCGCTGAA 62.739 66.667 7.64 0.00 0.00 3.02
3068 3205 1.904865 CCAGCAGCAGAAGGCCAAA 60.905 57.895 5.01 0.00 46.50 3.28
3252 3395 1.060122 GTGAGCCGTACGTACATTTGC 59.940 52.381 24.50 19.10 0.00 3.68
3299 3442 2.990395 TGCATGGCATGGTGCGTT 60.990 55.556 27.48 0.00 46.21 4.84
3300 3443 2.262292 GCATGGCATGGTGCGTTT 59.738 55.556 27.48 0.00 46.21 3.60
3389 3556 4.776647 GTTGCAATGGCGCCCGAC 62.777 66.667 26.77 14.58 45.35 4.79
3538 3714 6.459066 AGATTGATGTTGTATATCACCCTCG 58.541 40.000 0.00 0.00 34.50 4.63
3570 3746 1.798283 TGTTGTACCACATACCGCAC 58.202 50.000 0.00 0.00 32.16 5.34
3650 3826 6.790285 TCCGGTATGAGTTGTTAAACTTTC 57.210 37.500 0.00 0.00 46.84 2.62
3668 3844 0.817654 TCTTGTCGTCCTCGCATGAT 59.182 50.000 0.00 0.00 36.96 2.45
3671 3847 0.179137 TGTCGTCCTCGCATGATGAC 60.179 55.000 0.00 10.84 45.05 3.06
3678 3854 1.524179 CTCGCATGATGACGACGACG 61.524 60.000 5.58 5.58 45.75 5.12
3681 3857 1.788621 GCATGATGACGACGACGACG 61.789 60.000 17.60 17.60 42.66 5.12
3726 3908 3.543680 TCTTCTTAAGCCGCAATAGCT 57.456 42.857 0.00 0.00 44.19 3.32
3823 4005 1.409064 TCATGTCTGGCGGATGTAGTC 59.591 52.381 0.00 0.00 0.00 2.59
3824 4006 0.385751 ATGTCTGGCGGATGTAGTCG 59.614 55.000 0.00 0.00 0.00 4.18
3825 4007 0.678684 TGTCTGGCGGATGTAGTCGA 60.679 55.000 0.00 0.00 0.00 4.20
3826 4008 0.454600 GTCTGGCGGATGTAGTCGAA 59.545 55.000 0.00 0.00 0.00 3.71
3827 4009 1.135199 GTCTGGCGGATGTAGTCGAAA 60.135 52.381 0.00 0.00 0.00 3.46
3828 4010 1.754803 TCTGGCGGATGTAGTCGAAAT 59.245 47.619 0.00 0.00 0.00 2.17
3829 4011 2.953648 TCTGGCGGATGTAGTCGAAATA 59.046 45.455 0.00 0.00 0.00 1.40
3830 4012 3.004419 TCTGGCGGATGTAGTCGAAATAG 59.996 47.826 0.00 0.00 0.00 1.73
3831 4013 2.035449 TGGCGGATGTAGTCGAAATAGG 59.965 50.000 0.00 0.00 0.00 2.57
3832 4014 2.609737 GGCGGATGTAGTCGAAATAGGG 60.610 54.545 0.00 0.00 0.00 3.53
3833 4015 2.673833 CGGATGTAGTCGAAATAGGGC 58.326 52.381 0.00 0.00 0.00 5.19
3834 4016 2.609737 CGGATGTAGTCGAAATAGGGCC 60.610 54.545 0.00 0.00 0.00 5.80
3835 4017 2.289506 GGATGTAGTCGAAATAGGGCCC 60.290 54.545 16.46 16.46 0.00 5.80
3836 4018 2.170012 TGTAGTCGAAATAGGGCCCT 57.830 50.000 31.35 31.35 0.00 5.19
3837 4019 3.317455 TGTAGTCGAAATAGGGCCCTA 57.683 47.619 33.76 33.76 0.00 3.53
3838 4020 3.853207 TGTAGTCGAAATAGGGCCCTAT 58.147 45.455 35.03 35.03 40.63 2.57
3839 4021 3.576982 TGTAGTCGAAATAGGGCCCTATG 59.423 47.826 39.46 28.08 39.03 2.23
3840 4022 1.978580 AGTCGAAATAGGGCCCTATGG 59.021 52.381 39.46 30.10 39.03 2.74
3841 4023 1.697982 GTCGAAATAGGGCCCTATGGT 59.302 52.381 39.46 30.59 39.03 3.55
3842 4024 2.901839 GTCGAAATAGGGCCCTATGGTA 59.098 50.000 39.46 24.03 39.03 3.25
3843 4025 3.518303 GTCGAAATAGGGCCCTATGGTAT 59.482 47.826 39.46 26.61 39.03 2.73
3844 4026 3.517901 TCGAAATAGGGCCCTATGGTATG 59.482 47.826 39.46 26.92 39.03 2.39
3845 4027 3.517901 CGAAATAGGGCCCTATGGTATGA 59.482 47.826 39.46 17.15 39.03 2.15
3846 4028 4.164221 CGAAATAGGGCCCTATGGTATGAT 59.836 45.833 39.46 22.35 39.03 2.45
3847 4029 5.685075 CGAAATAGGGCCCTATGGTATGATC 60.685 48.000 39.46 25.59 39.03 2.92
3848 4030 1.972588 AGGGCCCTATGGTATGATCC 58.027 55.000 27.42 0.00 0.00 3.36
3849 4031 0.919710 GGGCCCTATGGTATGATCCC 59.080 60.000 17.04 0.00 0.00 3.85
3850 4032 0.919710 GGCCCTATGGTATGATCCCC 59.080 60.000 0.00 0.00 0.00 4.81
3851 4033 1.558143 GGCCCTATGGTATGATCCCCT 60.558 57.143 0.00 0.00 0.00 4.79
3852 4034 1.840635 GCCCTATGGTATGATCCCCTC 59.159 57.143 0.00 0.00 0.00 4.30
3853 4035 2.830899 GCCCTATGGTATGATCCCCTCA 60.831 54.545 0.00 0.00 38.53 3.86
3854 4036 2.840651 CCCTATGGTATGATCCCCTCAC 59.159 54.545 0.00 0.00 36.48 3.51
3855 4037 3.504903 CCCTATGGTATGATCCCCTCACT 60.505 52.174 0.00 0.00 36.48 3.41
3856 4038 4.171234 CCTATGGTATGATCCCCTCACTT 58.829 47.826 0.00 0.00 36.48 3.16
3857 4039 4.223923 CCTATGGTATGATCCCCTCACTTC 59.776 50.000 0.00 0.00 36.48 3.01
3858 4040 3.421394 TGGTATGATCCCCTCACTTCT 57.579 47.619 0.00 0.00 36.48 2.85
3859 4041 3.736094 TGGTATGATCCCCTCACTTCTT 58.264 45.455 0.00 0.00 36.48 2.52
3860 4042 3.455910 TGGTATGATCCCCTCACTTCTTG 59.544 47.826 0.00 0.00 36.48 3.02
3861 4043 2.725221 ATGATCCCCTCACTTCTTGC 57.275 50.000 0.00 0.00 36.48 4.01
3862 4044 1.361204 TGATCCCCTCACTTCTTGCA 58.639 50.000 0.00 0.00 0.00 4.08
3863 4045 1.918262 TGATCCCCTCACTTCTTGCAT 59.082 47.619 0.00 0.00 0.00 3.96
3864 4046 2.295885 GATCCCCTCACTTCTTGCATG 58.704 52.381 0.00 0.00 0.00 4.06
3865 4047 1.067295 TCCCCTCACTTCTTGCATGT 58.933 50.000 0.00 0.00 0.00 3.21
3866 4048 1.003580 TCCCCTCACTTCTTGCATGTC 59.996 52.381 0.00 0.00 0.00 3.06
3867 4049 1.271543 CCCCTCACTTCTTGCATGTCA 60.272 52.381 0.00 0.00 0.00 3.58
3868 4050 2.619849 CCCCTCACTTCTTGCATGTCAT 60.620 50.000 0.00 0.00 0.00 3.06
3869 4051 3.087031 CCCTCACTTCTTGCATGTCATT 58.913 45.455 0.00 0.00 0.00 2.57
3870 4052 3.119602 CCCTCACTTCTTGCATGTCATTG 60.120 47.826 0.00 0.00 0.00 2.82
3871 4053 3.754850 CCTCACTTCTTGCATGTCATTGA 59.245 43.478 0.00 0.00 0.00 2.57
3872 4054 4.379186 CCTCACTTCTTGCATGTCATTGAC 60.379 45.833 9.93 9.93 0.00 3.18
3873 4055 4.136051 TCACTTCTTGCATGTCATTGACA 58.864 39.130 21.05 21.05 46.90 3.58
3874 4056 4.214758 TCACTTCTTGCATGTCATTGACAG 59.785 41.667 22.82 15.81 46.04 3.51
3875 4057 3.504906 ACTTCTTGCATGTCATTGACAGG 59.495 43.478 23.39 23.39 46.04 4.00
3876 4058 3.421919 TCTTGCATGTCATTGACAGGA 57.578 42.857 29.77 17.45 45.54 3.86
3877 4059 3.340928 TCTTGCATGTCATTGACAGGAG 58.659 45.455 29.77 20.25 45.54 3.69
3878 4060 3.008266 TCTTGCATGTCATTGACAGGAGA 59.992 43.478 29.77 21.86 45.54 3.71
3879 4061 3.421919 TGCATGTCATTGACAGGAGAA 57.578 42.857 29.77 14.52 45.54 2.87
3880 4062 3.753815 TGCATGTCATTGACAGGAGAAA 58.246 40.909 29.77 12.38 45.54 2.52
3881 4063 3.503363 TGCATGTCATTGACAGGAGAAAC 59.497 43.478 29.77 14.98 45.54 2.78
3882 4064 3.503363 GCATGTCATTGACAGGAGAAACA 59.497 43.478 29.77 3.82 45.54 2.83
3883 4065 4.379186 GCATGTCATTGACAGGAGAAACAG 60.379 45.833 29.77 10.59 45.54 3.16
3884 4066 4.687901 TGTCATTGACAGGAGAAACAGA 57.312 40.909 15.41 0.00 37.67 3.41
3885 4067 4.635223 TGTCATTGACAGGAGAAACAGAG 58.365 43.478 15.41 0.00 37.67 3.35
3886 4068 4.101585 TGTCATTGACAGGAGAAACAGAGT 59.898 41.667 15.41 0.00 37.67 3.24
3887 4069 4.450419 GTCATTGACAGGAGAAACAGAGTG 59.550 45.833 11.93 0.00 32.09 3.51
3888 4070 4.101585 TCATTGACAGGAGAAACAGAGTGT 59.898 41.667 0.00 0.00 0.00 3.55
3889 4071 3.459232 TGACAGGAGAAACAGAGTGTG 57.541 47.619 0.00 0.00 0.00 3.82
3890 4072 2.766263 TGACAGGAGAAACAGAGTGTGT 59.234 45.455 0.00 0.00 43.24 3.72
3902 4084 5.618056 ACAGAGTGTGTTGAATAGCATTG 57.382 39.130 0.00 0.00 34.94 2.82
3903 4085 5.308014 ACAGAGTGTGTTGAATAGCATTGA 58.692 37.500 0.00 0.00 34.94 2.57
3904 4086 5.180117 ACAGAGTGTGTTGAATAGCATTGAC 59.820 40.000 0.00 0.00 34.94 3.18
3905 4087 5.179929 CAGAGTGTGTTGAATAGCATTGACA 59.820 40.000 0.00 0.00 0.00 3.58
3906 4088 5.942236 AGAGTGTGTTGAATAGCATTGACAT 59.058 36.000 0.00 0.00 0.00 3.06
3907 4089 6.432162 AGAGTGTGTTGAATAGCATTGACATT 59.568 34.615 0.00 0.00 0.00 2.71
3908 4090 7.607607 AGAGTGTGTTGAATAGCATTGACATTA 59.392 33.333 0.00 0.00 0.00 1.90
3909 4091 7.755591 AGTGTGTTGAATAGCATTGACATTAG 58.244 34.615 0.00 0.00 0.00 1.73
3910 4092 7.607607 AGTGTGTTGAATAGCATTGACATTAGA 59.392 33.333 0.00 0.00 0.00 2.10
3911 4093 8.236586 GTGTGTTGAATAGCATTGACATTAGAA 58.763 33.333 0.00 0.00 0.00 2.10
3912 4094 8.453320 TGTGTTGAATAGCATTGACATTAGAAG 58.547 33.333 0.00 0.00 0.00 2.85
3913 4095 8.668353 GTGTTGAATAGCATTGACATTAGAAGA 58.332 33.333 0.00 0.00 0.00 2.87
3914 4096 9.230122 TGTTGAATAGCATTGACATTAGAAGAA 57.770 29.630 0.00 0.00 0.00 2.52
3942 4124 5.415415 TGTAACAAACAAAATGCATTGGC 57.585 34.783 13.82 0.00 36.27 4.52
3943 4125 4.877823 TGTAACAAACAAAATGCATTGGCA 59.122 33.333 13.82 0.00 45.08 4.92
3955 4137 2.739292 GCATTGGCATTAGCATCAGTG 58.261 47.619 0.00 0.00 44.61 3.66
3956 4138 2.359848 GCATTGGCATTAGCATCAGTGA 59.640 45.455 0.00 0.00 44.61 3.41
3957 4139 3.794475 GCATTGGCATTAGCATCAGTGAC 60.794 47.826 0.00 0.00 44.61 3.67
3958 4140 2.785540 TGGCATTAGCATCAGTGACA 57.214 45.000 0.00 0.00 44.61 3.58
3959 4141 2.635714 TGGCATTAGCATCAGTGACAG 58.364 47.619 0.00 0.00 44.61 3.51
3960 4142 2.236893 TGGCATTAGCATCAGTGACAGA 59.763 45.455 0.00 0.00 44.61 3.41
3961 4143 2.871022 GGCATTAGCATCAGTGACAGAG 59.129 50.000 0.00 0.00 44.61 3.35
3962 4144 2.287373 GCATTAGCATCAGTGACAGAGC 59.713 50.000 0.00 0.00 41.58 4.09
3963 4145 3.794717 CATTAGCATCAGTGACAGAGCT 58.205 45.455 13.53 13.53 36.20 4.09
3964 4146 4.738839 GCATTAGCATCAGTGACAGAGCTA 60.739 45.833 11.98 11.98 41.58 3.32
3965 4147 2.957491 AGCATCAGTGACAGAGCTAC 57.043 50.000 8.85 0.00 0.00 3.58
3966 4148 2.174360 AGCATCAGTGACAGAGCTACA 58.826 47.619 8.85 0.00 0.00 2.74
3967 4149 2.166050 AGCATCAGTGACAGAGCTACAG 59.834 50.000 8.85 0.00 0.00 2.74
3968 4150 2.094286 GCATCAGTGACAGAGCTACAGT 60.094 50.000 0.00 0.00 0.00 3.55
3969 4151 3.768406 CATCAGTGACAGAGCTACAGTC 58.232 50.000 0.00 5.89 35.92 3.51
3970 4152 2.863809 TCAGTGACAGAGCTACAGTCA 58.136 47.619 10.34 10.34 41.46 3.41
3971 4153 3.425659 TCAGTGACAGAGCTACAGTCAT 58.574 45.455 15.66 5.63 44.39 3.06
3972 4154 3.829026 TCAGTGACAGAGCTACAGTCATT 59.171 43.478 15.66 10.49 44.39 2.57
3973 4155 4.281941 TCAGTGACAGAGCTACAGTCATTT 59.718 41.667 15.66 7.40 44.39 2.32
3974 4156 4.388165 CAGTGACAGAGCTACAGTCATTTG 59.612 45.833 15.66 13.46 44.39 2.32
3975 4157 4.039730 AGTGACAGAGCTACAGTCATTTGT 59.960 41.667 15.66 2.84 44.39 2.83
3976 4158 4.151335 GTGACAGAGCTACAGTCATTTGTG 59.849 45.833 15.66 0.00 44.39 3.33
3977 4159 4.202253 TGACAGAGCTACAGTCATTTGTGT 60.202 41.667 10.34 0.00 39.46 3.72
3978 4160 4.060900 ACAGAGCTACAGTCATTTGTGTG 58.939 43.478 0.00 0.00 32.56 3.82
3979 4161 3.434641 CAGAGCTACAGTCATTTGTGTGG 59.565 47.826 0.00 0.00 32.56 4.17
3980 4162 2.744202 GAGCTACAGTCATTTGTGTGGG 59.256 50.000 0.00 0.00 32.56 4.61
3981 4163 1.200020 GCTACAGTCATTTGTGTGGGC 59.800 52.381 0.00 0.00 32.56 5.36
3982 4164 1.464608 CTACAGTCATTTGTGTGGGCG 59.535 52.381 0.00 0.00 32.56 6.13
3983 4165 1.172180 ACAGTCATTTGTGTGGGCGG 61.172 55.000 0.00 0.00 0.00 6.13
3984 4166 1.603455 AGTCATTTGTGTGGGCGGG 60.603 57.895 0.00 0.00 0.00 6.13
3985 4167 2.988684 TCATTTGTGTGGGCGGGC 60.989 61.111 0.00 0.00 0.00 6.13
3986 4168 4.067913 CATTTGTGTGGGCGGGCC 62.068 66.667 14.65 14.65 0.00 5.80
3987 4169 4.612279 ATTTGTGTGGGCGGGCCA 62.612 61.111 20.63 20.63 37.98 5.36
3988 4170 4.841617 TTTGTGTGGGCGGGCCAA 62.842 61.111 26.14 12.70 37.98 4.52
3989 4171 4.841617 TTGTGTGGGCGGGCCAAA 62.842 61.111 26.14 18.32 37.98 3.28
3990 4172 4.841617 TGTGTGGGCGGGCCAAAA 62.842 61.111 26.14 13.93 37.98 2.44
3991 4173 4.293648 GTGTGGGCGGGCCAAAAC 62.294 66.667 26.14 21.37 37.98 2.43
3996 4178 3.378602 GGCGGGCCAAAACGGATT 61.379 61.111 4.39 0.00 36.56 3.01
3997 4179 2.126110 GCGGGCCAAAACGGATTG 60.126 61.111 4.39 0.00 36.56 2.67
4009 4191 5.650543 CAAAACGGATTGGAATAAGAAGGG 58.349 41.667 0.00 0.00 0.00 3.95
4010 4192 2.932261 ACGGATTGGAATAAGAAGGGC 58.068 47.619 0.00 0.00 0.00 5.19
4011 4193 2.230660 CGGATTGGAATAAGAAGGGCC 58.769 52.381 0.00 0.00 0.00 5.80
4012 4194 2.422803 CGGATTGGAATAAGAAGGGCCA 60.423 50.000 6.18 0.00 0.00 5.36
4013 4195 3.751893 CGGATTGGAATAAGAAGGGCCAT 60.752 47.826 6.18 0.00 0.00 4.40
4014 4196 4.226384 GGATTGGAATAAGAAGGGCCATT 58.774 43.478 0.07 0.07 0.00 3.16
4015 4197 5.393866 GGATTGGAATAAGAAGGGCCATTA 58.606 41.667 0.73 1.96 0.00 1.90
4016 4198 5.838521 GGATTGGAATAAGAAGGGCCATTAA 59.161 40.000 0.73 0.00 0.00 1.40
4017 4199 6.326323 GGATTGGAATAAGAAGGGCCATTAAA 59.674 38.462 0.73 0.00 0.00 1.52
4018 4200 7.147567 GGATTGGAATAAGAAGGGCCATTAAAA 60.148 37.037 0.73 0.00 0.00 1.52
4019 4201 7.747809 TTGGAATAAGAAGGGCCATTAAAAT 57.252 32.000 0.73 0.00 0.00 1.82
4020 4202 7.747809 TGGAATAAGAAGGGCCATTAAAATT 57.252 32.000 0.73 2.67 0.00 1.82
4021 4203 8.156822 TGGAATAAGAAGGGCCATTAAAATTT 57.843 30.769 0.73 0.00 0.00 1.82
4022 4204 8.610369 TGGAATAAGAAGGGCCATTAAAATTTT 58.390 29.630 0.73 8.75 0.00 1.82
4023 4205 8.892723 GGAATAAGAAGGGCCATTAAAATTTTG 58.107 33.333 13.76 0.00 0.00 2.44
4024 4206 7.864108 ATAAGAAGGGCCATTAAAATTTTGC 57.136 32.000 13.76 7.93 0.00 3.68
4025 4207 5.503634 AGAAGGGCCATTAAAATTTTGCT 57.496 34.783 13.76 0.00 0.00 3.91
4026 4208 5.491070 AGAAGGGCCATTAAAATTTTGCTC 58.509 37.500 13.76 8.09 0.00 4.26
4027 4209 5.249163 AGAAGGGCCATTAAAATTTTGCTCT 59.751 36.000 13.76 10.25 0.00 4.09
4028 4210 5.503634 AGGGCCATTAAAATTTTGCTCTT 57.496 34.783 13.76 0.00 0.00 2.85
4029 4211 6.619329 AGGGCCATTAAAATTTTGCTCTTA 57.381 33.333 13.76 0.00 0.00 2.10
4030 4212 6.406370 AGGGCCATTAAAATTTTGCTCTTAC 58.594 36.000 13.76 0.09 0.00 2.34
4031 4213 6.013812 AGGGCCATTAAAATTTTGCTCTTACA 60.014 34.615 13.76 0.00 0.00 2.41
4032 4214 6.313658 GGGCCATTAAAATTTTGCTCTTACAG 59.686 38.462 13.76 0.00 0.00 2.74
4044 4226 3.198872 GCTCTTACAGCCAGATTGTACC 58.801 50.000 0.00 0.00 43.17 3.34
4045 4227 3.798202 CTCTTACAGCCAGATTGTACCC 58.202 50.000 0.00 0.00 31.17 3.69
4046 4228 3.450904 TCTTACAGCCAGATTGTACCCT 58.549 45.455 0.00 0.00 31.17 4.34
4047 4229 4.616553 TCTTACAGCCAGATTGTACCCTA 58.383 43.478 0.00 0.00 31.17 3.53
4048 4230 5.027460 TCTTACAGCCAGATTGTACCCTAA 58.973 41.667 0.00 0.00 31.17 2.69
4049 4231 5.665812 TCTTACAGCCAGATTGTACCCTAAT 59.334 40.000 0.00 0.00 31.17 1.73
4050 4232 4.423625 ACAGCCAGATTGTACCCTAATC 57.576 45.455 0.00 0.00 35.32 1.75
4051 4233 4.040755 ACAGCCAGATTGTACCCTAATCT 58.959 43.478 1.98 1.98 43.66 2.40
4052 4234 4.475016 ACAGCCAGATTGTACCCTAATCTT 59.525 41.667 4.59 0.00 41.60 2.40
4053 4235 4.818546 CAGCCAGATTGTACCCTAATCTTG 59.181 45.833 4.59 3.58 41.60 3.02
4054 4236 4.721776 AGCCAGATTGTACCCTAATCTTGA 59.278 41.667 8.75 0.00 41.60 3.02
4055 4237 4.816925 GCCAGATTGTACCCTAATCTTGAC 59.183 45.833 8.75 0.00 41.60 3.18
4056 4238 5.396884 GCCAGATTGTACCCTAATCTTGACT 60.397 44.000 8.75 0.00 41.60 3.41
4057 4239 6.051717 CCAGATTGTACCCTAATCTTGACTG 58.948 44.000 4.59 0.00 41.60 3.51
4058 4240 6.127054 CCAGATTGTACCCTAATCTTGACTGA 60.127 42.308 4.59 0.00 41.60 3.41
4059 4241 7.331026 CAGATTGTACCCTAATCTTGACTGAA 58.669 38.462 4.59 0.00 41.60 3.02
4060 4242 7.824289 CAGATTGTACCCTAATCTTGACTGAAA 59.176 37.037 4.59 0.00 41.60 2.69
4061 4243 8.552296 AGATTGTACCCTAATCTTGACTGAAAT 58.448 33.333 1.98 0.00 40.92 2.17
4062 4244 9.178758 GATTGTACCCTAATCTTGACTGAAATT 57.821 33.333 0.00 0.00 32.98 1.82
4063 4245 8.934023 TTGTACCCTAATCTTGACTGAAATTT 57.066 30.769 0.00 0.00 0.00 1.82
4064 4246 8.934023 TGTACCCTAATCTTGACTGAAATTTT 57.066 30.769 0.00 0.00 0.00 1.82
4065 4247 8.792633 TGTACCCTAATCTTGACTGAAATTTTG 58.207 33.333 0.00 0.00 0.00 2.44
4066 4248 7.839680 ACCCTAATCTTGACTGAAATTTTGT 57.160 32.000 0.00 0.00 0.00 2.83
4067 4249 7.661040 ACCCTAATCTTGACTGAAATTTTGTG 58.339 34.615 0.00 0.00 0.00 3.33
4068 4250 6.587608 CCCTAATCTTGACTGAAATTTTGTGC 59.412 38.462 0.00 0.00 0.00 4.57
4069 4251 6.306356 CCTAATCTTGACTGAAATTTTGTGCG 59.694 38.462 0.00 0.00 0.00 5.34
4070 4252 3.963665 TCTTGACTGAAATTTTGTGCGG 58.036 40.909 0.00 0.00 0.00 5.69
4071 4253 2.132740 TGACTGAAATTTTGTGCGGC 57.867 45.000 0.00 0.00 0.00 6.53
4072 4254 1.680735 TGACTGAAATTTTGTGCGGCT 59.319 42.857 0.00 0.00 0.00 5.52
4073 4255 2.053627 GACTGAAATTTTGTGCGGCTG 58.946 47.619 0.00 0.00 0.00 4.85
4074 4256 1.269726 ACTGAAATTTTGTGCGGCTGG 60.270 47.619 0.00 0.00 0.00 4.85
4075 4257 0.033228 TGAAATTTTGTGCGGCTGGG 59.967 50.000 0.00 0.00 0.00 4.45
4076 4258 1.291184 GAAATTTTGTGCGGCTGGGC 61.291 55.000 0.00 0.00 0.00 5.36
4077 4259 3.572196 AATTTTGTGCGGCTGGGCG 62.572 57.895 12.10 12.10 35.06 6.13
4097 4279 3.451894 CCATGGCCTGGTTTCGCC 61.452 66.667 3.32 0.00 45.92 5.54
4098 4280 3.451894 CATGGCCTGGTTTCGCCC 61.452 66.667 3.32 0.00 45.07 6.13
4099 4281 3.978193 ATGGCCTGGTTTCGCCCA 61.978 61.111 3.32 0.00 45.07 5.36
4105 4287 3.599285 CTGGTTTCGCCCAGCCGTA 62.599 63.158 3.20 0.00 45.19 4.02
4106 4288 2.818274 GGTTTCGCCCAGCCGTAG 60.818 66.667 0.00 0.00 0.00 3.51
4107 4289 3.497031 GTTTCGCCCAGCCGTAGC 61.497 66.667 0.00 0.00 40.32 3.58
4117 4299 2.202623 GCCGTAGCTCCGTCACTG 60.203 66.667 0.00 0.00 35.50 3.66
4118 4300 2.697761 GCCGTAGCTCCGTCACTGA 61.698 63.158 0.00 0.00 35.50 3.41
4119 4301 2.005960 GCCGTAGCTCCGTCACTGAT 62.006 60.000 0.00 0.00 35.50 2.90
4120 4302 0.456221 CCGTAGCTCCGTCACTGATT 59.544 55.000 0.00 0.00 0.00 2.57
4121 4303 1.674441 CCGTAGCTCCGTCACTGATTA 59.326 52.381 0.00 0.00 0.00 1.75
4122 4304 2.287069 CCGTAGCTCCGTCACTGATTAG 60.287 54.545 0.00 0.00 0.00 1.73
4123 4305 2.733517 GTAGCTCCGTCACTGATTAGC 58.266 52.381 0.00 0.00 0.00 3.09
4124 4306 1.186200 AGCTCCGTCACTGATTAGCA 58.814 50.000 10.91 0.00 32.42 3.49
4125 4307 1.134965 AGCTCCGTCACTGATTAGCAC 60.135 52.381 10.91 0.00 32.42 4.40
4126 4308 1.134965 GCTCCGTCACTGATTAGCACT 60.135 52.381 0.00 0.00 0.00 4.40
4127 4309 2.099263 GCTCCGTCACTGATTAGCACTA 59.901 50.000 0.00 0.00 0.00 2.74
4128 4310 3.428999 GCTCCGTCACTGATTAGCACTAA 60.429 47.826 0.00 0.00 0.00 2.24
4129 4311 4.744570 CTCCGTCACTGATTAGCACTAAA 58.255 43.478 0.00 0.00 0.00 1.85
4130 4312 5.142061 TCCGTCACTGATTAGCACTAAAA 57.858 39.130 0.00 0.00 0.00 1.52
4131 4313 5.543714 TCCGTCACTGATTAGCACTAAAAA 58.456 37.500 0.00 0.00 0.00 1.94
4132 4314 5.637810 TCCGTCACTGATTAGCACTAAAAAG 59.362 40.000 0.00 0.00 0.00 2.27
4133 4315 5.637810 CCGTCACTGATTAGCACTAAAAAGA 59.362 40.000 8.78 0.00 0.00 2.52
4134 4316 6.147164 CCGTCACTGATTAGCACTAAAAAGAA 59.853 38.462 8.78 0.00 0.00 2.52
4135 4317 7.307751 CCGTCACTGATTAGCACTAAAAAGAAA 60.308 37.037 8.78 0.00 0.00 2.52
4136 4318 7.530861 CGTCACTGATTAGCACTAAAAAGAAAC 59.469 37.037 8.78 6.21 0.00 2.78
4137 4319 8.342634 GTCACTGATTAGCACTAAAAAGAAACA 58.657 33.333 8.78 0.00 0.00 2.83
4138 4320 8.342634 TCACTGATTAGCACTAAAAAGAAACAC 58.657 33.333 8.78 0.00 0.00 3.32
4139 4321 7.591426 CACTGATTAGCACTAAAAAGAAACACC 59.409 37.037 8.78 0.00 0.00 4.16
4140 4322 7.284489 ACTGATTAGCACTAAAAAGAAACACCA 59.716 33.333 8.78 0.00 0.00 4.17
4141 4323 8.177119 TGATTAGCACTAAAAAGAAACACCAT 57.823 30.769 0.00 0.00 0.00 3.55
4142 4324 8.637986 TGATTAGCACTAAAAAGAAACACCATT 58.362 29.630 0.00 0.00 0.00 3.16
4143 4325 9.129209 GATTAGCACTAAAAAGAAACACCATTC 57.871 33.333 0.00 0.00 0.00 2.67
4144 4326 5.842907 AGCACTAAAAAGAAACACCATTCC 58.157 37.500 0.00 0.00 0.00 3.01
4145 4327 5.598417 AGCACTAAAAAGAAACACCATTCCT 59.402 36.000 0.00 0.00 0.00 3.36
4146 4328 5.691754 GCACTAAAAAGAAACACCATTCCTG 59.308 40.000 0.00 0.00 0.00 3.86
4147 4329 6.460953 GCACTAAAAAGAAACACCATTCCTGA 60.461 38.462 0.00 0.00 0.00 3.86
4148 4330 7.488322 CACTAAAAAGAAACACCATTCCTGAA 58.512 34.615 0.00 0.00 0.00 3.02
4149 4331 7.435192 CACTAAAAAGAAACACCATTCCTGAAC 59.565 37.037 0.00 0.00 0.00 3.18
4150 4332 6.544928 AAAAAGAAACACCATTCCTGAACT 57.455 33.333 0.00 0.00 0.00 3.01
4151 4333 5.520376 AAAGAAACACCATTCCTGAACTG 57.480 39.130 0.00 0.00 0.00 3.16
4152 4334 3.490348 AGAAACACCATTCCTGAACTGG 58.510 45.455 6.74 6.74 36.09 4.00
4153 4335 3.117512 AGAAACACCATTCCTGAACTGGT 60.118 43.478 7.67 7.67 44.02 4.00
4154 4336 4.104102 AGAAACACCATTCCTGAACTGGTA 59.896 41.667 11.22 0.00 41.30 3.25
4155 4337 4.447138 AACACCATTCCTGAACTGGTAA 57.553 40.909 11.22 0.00 41.30 2.85
4156 4338 4.657814 ACACCATTCCTGAACTGGTAAT 57.342 40.909 11.22 4.13 41.30 1.89
4157 4339 4.998051 ACACCATTCCTGAACTGGTAATT 58.002 39.130 11.22 0.00 41.30 1.40
4158 4340 5.393866 ACACCATTCCTGAACTGGTAATTT 58.606 37.500 11.22 0.00 41.30 1.82
4159 4341 5.838521 ACACCATTCCTGAACTGGTAATTTT 59.161 36.000 11.22 0.00 41.30 1.82
4160 4342 6.326323 ACACCATTCCTGAACTGGTAATTTTT 59.674 34.615 11.22 0.00 41.30 1.94
4181 4363 7.693969 TTTTTGTTGGTGGAAAACAATGAAT 57.306 28.000 2.86 0.00 44.57 2.57
4182 4364 8.792830 TTTTTGTTGGTGGAAAACAATGAATA 57.207 26.923 2.86 0.00 44.57 1.75
4183 4365 8.970859 TTTTGTTGGTGGAAAACAATGAATAT 57.029 26.923 2.86 0.00 44.57 1.28
4208 4390 7.734538 ATACAATTTTGCTAAACATACGCAC 57.265 32.000 0.00 0.00 32.71 5.34
4209 4391 4.920927 ACAATTTTGCTAAACATACGCACC 59.079 37.500 0.00 0.00 32.71 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.286558 CCGTTTTTAACTCTTTTTGCGACAA 59.713 36.000 0.00 0.00 0.00 3.18
1 2 4.794246 CCGTTTTTAACTCTTTTTGCGACA 59.206 37.500 0.00 0.00 0.00 4.35
21 22 1.743958 CCTGTACTTCTGATCGACCGT 59.256 52.381 0.00 0.00 0.00 4.83
29 30 3.188159 ACGTTTTGCCTGTACTTCTGA 57.812 42.857 0.00 0.00 0.00 3.27
32 33 5.662211 TTTCTACGTTTTGCCTGTACTTC 57.338 39.130 0.00 0.00 0.00 3.01
41 42 9.321590 AGTATCGTTTAATTTTCTACGTTTTGC 57.678 29.630 0.00 0.00 35.63 3.68
48 49 9.897349 CGGAGAAAGTATCGTTTAATTTTCTAC 57.103 33.333 0.00 0.00 35.64 2.59
49 50 9.643693 ACGGAGAAAGTATCGTTTAATTTTCTA 57.356 29.630 0.00 0.00 35.64 2.10
57 58 5.885230 TGAGACGGAGAAAGTATCGTTTA 57.115 39.130 0.00 0.00 35.91 2.01
103 107 1.452145 CTCCTCCTCCACGCTCTAGC 61.452 65.000 0.00 0.00 37.78 3.42
111 115 0.042881 AACTACCCCTCCTCCTCCAC 59.957 60.000 0.00 0.00 0.00 4.02
121 125 1.674817 CGCAACGATCAAACTACCCCT 60.675 52.381 0.00 0.00 0.00 4.79
122 126 0.725117 CGCAACGATCAAACTACCCC 59.275 55.000 0.00 0.00 0.00 4.95
123 127 0.725117 CCGCAACGATCAAACTACCC 59.275 55.000 0.00 0.00 0.00 3.69
124 128 0.096454 GCCGCAACGATCAAACTACC 59.904 55.000 0.00 0.00 0.00 3.18
125 129 0.096454 GGCCGCAACGATCAAACTAC 59.904 55.000 0.00 0.00 0.00 2.73
163 170 3.119029 GCTTGCAGGATTGAATTTGCCTA 60.119 43.478 0.00 2.15 35.75 3.93
169 176 4.020039 TGGAAATGCTTGCAGGATTGAATT 60.020 37.500 0.00 0.00 36.36 2.17
175 182 0.813184 CGTGGAAATGCTTGCAGGAT 59.187 50.000 0.00 0.00 40.13 3.24
245 321 3.112709 GCGGTTGGAGCTCGTGTC 61.113 66.667 7.83 0.00 0.00 3.67
428 511 1.153901 GCACTAACAGGCGAGCGTA 60.154 57.895 0.00 0.00 0.00 4.42
429 512 2.432628 GCACTAACAGGCGAGCGT 60.433 61.111 0.00 0.00 0.00 5.07
591 683 3.991924 ATGGCGACCTCTCAGGCCT 62.992 63.158 0.00 0.00 45.75 5.19
775 871 8.932945 TGATGCCTATTTATAGATTCTTAGCG 57.067 34.615 0.00 0.00 32.05 4.26
779 875 9.956640 CTCCTTGATGCCTATTTATAGATTCTT 57.043 33.333 0.00 0.00 32.05 2.52
780 876 8.046107 GCTCCTTGATGCCTATTTATAGATTCT 58.954 37.037 0.00 0.00 32.05 2.40
798 900 1.289160 ATGGGTAAGCTGCTCCTTGA 58.711 50.000 1.00 0.00 0.00 3.02
873 975 0.181587 TGAAGGTTCGTGGGCTTGAA 59.818 50.000 0.00 0.00 0.00 2.69
874 976 0.400213 ATGAAGGTTCGTGGGCTTGA 59.600 50.000 0.00 0.00 0.00 3.02
880 982 2.166459 TCTAGCTGATGAAGGTTCGTGG 59.834 50.000 0.00 0.00 37.85 4.94
910 1017 3.949132 AGAAGAGAGGCCAAGAATGTTC 58.051 45.455 5.01 0.00 0.00 3.18
928 1035 4.162320 AGGTGAAACAGAGACAGACAAGAA 59.838 41.667 0.00 0.00 39.98 2.52
929 1036 3.706594 AGGTGAAACAGAGACAGACAAGA 59.293 43.478 0.00 0.00 39.98 3.02
930 1037 4.054671 GAGGTGAAACAGAGACAGACAAG 58.945 47.826 0.00 0.00 39.98 3.16
932 1039 3.031013 TGAGGTGAAACAGAGACAGACA 58.969 45.455 0.00 0.00 39.98 3.41
933 1040 3.735237 TGAGGTGAAACAGAGACAGAC 57.265 47.619 0.00 0.00 39.98 3.51
945 1054 4.760530 AAAGATCGATGGATGAGGTGAA 57.239 40.909 0.54 0.00 31.51 3.18
948 1057 3.900601 AGCTAAAGATCGATGGATGAGGT 59.099 43.478 0.54 0.00 31.51 3.85
949 1058 4.533919 AGCTAAAGATCGATGGATGAGG 57.466 45.455 0.54 0.00 31.51 3.86
954 1063 4.022762 GTCAGCTAGCTAAAGATCGATGGA 60.023 45.833 18.86 2.70 0.00 3.41
956 1065 4.233789 GGTCAGCTAGCTAAAGATCGATG 58.766 47.826 18.86 1.59 0.00 3.84
957 1066 3.257127 GGGTCAGCTAGCTAAAGATCGAT 59.743 47.826 18.86 0.00 0.00 3.59
958 1067 2.623889 GGGTCAGCTAGCTAAAGATCGA 59.376 50.000 18.86 5.69 0.00 3.59
959 1068 2.625790 AGGGTCAGCTAGCTAAAGATCG 59.374 50.000 18.86 2.97 0.00 3.69
960 1069 3.639094 TGAGGGTCAGCTAGCTAAAGATC 59.361 47.826 18.86 11.10 0.00 2.75
961 1070 3.647636 TGAGGGTCAGCTAGCTAAAGAT 58.352 45.455 18.86 3.61 0.00 2.40
962 1071 3.101643 TGAGGGTCAGCTAGCTAAAGA 57.898 47.619 18.86 8.14 0.00 2.52
963 1072 4.830046 TCTATGAGGGTCAGCTAGCTAAAG 59.170 45.833 18.86 5.46 0.00 1.85
964 1073 4.585162 GTCTATGAGGGTCAGCTAGCTAAA 59.415 45.833 18.86 5.85 0.00 1.85
965 1074 4.145807 GTCTATGAGGGTCAGCTAGCTAA 58.854 47.826 18.86 0.00 0.00 3.09
972 1081 0.755698 TCGGGTCTATGAGGGTCAGC 60.756 60.000 0.00 0.00 0.00 4.26
974 1083 0.924090 TCTCGGGTCTATGAGGGTCA 59.076 55.000 0.00 0.00 33.00 4.02
977 1086 1.519751 CGCTCTCGGGTCTATGAGGG 61.520 65.000 0.00 0.00 35.74 4.30
982 1091 0.538516 ATCTGCGCTCTCGGGTCTAT 60.539 55.000 9.73 0.00 35.95 1.98
983 1092 1.152943 ATCTGCGCTCTCGGGTCTA 60.153 57.895 9.73 0.00 35.95 2.59
985 1094 2.279120 CATCTGCGCTCTCGGGTC 60.279 66.667 9.73 0.00 35.95 4.46
989 1098 2.510012 TTGCCATCTGCGCTCTCG 60.510 61.111 9.73 0.00 45.60 4.04
1158 1267 0.880278 GGACAAGAGCACGCACTTGA 60.880 55.000 28.23 0.00 43.83 3.02
1164 1273 1.166531 AACAAGGGACAAGAGCACGC 61.167 55.000 0.00 0.00 0.00 5.34
1230 1348 1.560860 GCACCGCCGATGATTAGCTC 61.561 60.000 0.00 0.00 0.00 4.09
1400 1520 5.810074 AGTTTGTCTTATTTTGTGTTGGTGC 59.190 36.000 0.00 0.00 0.00 5.01
1406 1526 5.048991 CCGGCTAGTTTGTCTTATTTTGTGT 60.049 40.000 0.00 0.00 0.00 3.72
1410 1530 5.310451 TCACCGGCTAGTTTGTCTTATTTT 58.690 37.500 0.00 0.00 0.00 1.82
1768 1894 3.476552 GGGTCTGTGATTGACTTGAACA 58.523 45.455 0.00 0.00 35.04 3.18
1771 1897 1.001974 CCGGGTCTGTGATTGACTTGA 59.998 52.381 0.00 0.00 35.04 3.02
1772 1898 1.001974 TCCGGGTCTGTGATTGACTTG 59.998 52.381 0.00 0.00 35.04 3.16
1815 1941 4.103357 CCTGACAACTACTACGTACATGC 58.897 47.826 0.00 0.00 0.00 4.06
1819 1945 7.086376 TGATTTTCCTGACAACTACTACGTAC 58.914 38.462 0.00 0.00 0.00 3.67
1820 1946 7.218228 TGATTTTCCTGACAACTACTACGTA 57.782 36.000 0.00 0.00 0.00 3.57
1821 1947 6.092955 TGATTTTCCTGACAACTACTACGT 57.907 37.500 0.00 0.00 0.00 3.57
1822 1948 7.596749 AATGATTTTCCTGACAACTACTACG 57.403 36.000 0.00 0.00 0.00 3.51
1973 2105 4.261155 CGCCATTCAACTTGAACTTGAAGA 60.261 41.667 6.35 0.00 39.45 2.87
2035 2167 4.099881 ACATGCATCAACCAAAAAGTCACT 59.900 37.500 0.00 0.00 0.00 3.41
2050 2182 3.307242 GGTCAGAGACGTTAACATGCATC 59.693 47.826 6.39 0.00 32.65 3.91
2111 2243 6.210185 ACGTTACCTTGTGTATCTTTACTCCT 59.790 38.462 0.00 0.00 0.00 3.69
2126 2258 3.683989 CATGCATGCTTACGTTACCTTG 58.316 45.455 20.33 0.00 0.00 3.61
2153 2288 1.880027 GGCCTGATGAAACAACTCGTT 59.120 47.619 0.00 0.00 40.50 3.85
2474 2611 2.098831 GTACTCCGGCTTGGCGAAC 61.099 63.158 17.91 6.82 37.80 3.95
2533 2670 2.441532 GGATGAGGTCCCGGTCGA 60.442 66.667 0.00 0.00 41.50 4.20
3291 3434 1.136356 CGCATGCATAAACGCACCA 59.864 52.632 19.57 0.00 46.56 4.17
3297 3440 3.306703 CCCAAACAATCGCATGCATAAAC 59.693 43.478 19.57 0.00 0.00 2.01
3298 3441 3.194329 TCCCAAACAATCGCATGCATAAA 59.806 39.130 19.57 0.00 0.00 1.40
3299 3442 2.757314 TCCCAAACAATCGCATGCATAA 59.243 40.909 19.57 2.32 0.00 1.90
3300 3443 2.373224 TCCCAAACAATCGCATGCATA 58.627 42.857 19.57 5.21 0.00 3.14
3346 3504 4.028187 CCGTAAAACGTTAAGCTAGCTACG 60.028 45.833 29.48 29.48 40.58 3.51
3351 3509 4.488879 ACCTCCGTAAAACGTTAAGCTAG 58.511 43.478 0.00 0.00 40.58 3.42
3389 3556 2.906897 ACACAAGGCTTGCCCACG 60.907 61.111 26.45 12.42 35.39 4.94
3421 3589 7.119262 ACCATAAACAAAACAAGAGGATCGTAG 59.881 37.037 0.00 0.00 42.67 3.51
3425 3593 7.384932 CCAAACCATAAACAAAACAAGAGGATC 59.615 37.037 0.00 0.00 0.00 3.36
3538 3714 3.344515 GGTACAACATGGACCCTCTTTC 58.655 50.000 0.00 0.00 45.88 2.62
3650 3826 0.926155 CATCATGCGAGGACGACAAG 59.074 55.000 0.00 0.00 42.66 3.16
3668 3844 0.664466 AGTAGTCGTCGTCGTCGTCA 60.664 55.000 11.41 0.00 38.33 4.35
3671 3847 0.296056 GGTAGTAGTCGTCGTCGTCG 59.704 60.000 5.50 5.50 38.33 5.12
3678 3854 2.098770 GGTGGTGATGGTAGTAGTCGTC 59.901 54.545 0.00 0.00 0.00 4.20
3681 3857 2.167900 GGTGGTGGTGATGGTAGTAGTC 59.832 54.545 0.00 0.00 0.00 2.59
3726 3908 5.740290 AGAACGAAGATTGGAGTTAGGAA 57.260 39.130 0.00 0.00 0.00 3.36
3767 3949 0.442310 GAGAGCGTAAATGCGTGCAA 59.558 50.000 0.00 0.00 40.67 4.08
3823 4005 3.517901 TCATACCATAGGGCCCTATTTCG 59.482 47.826 37.50 28.31 37.16 3.46
3824 4006 5.398012 GGATCATACCATAGGGCCCTATTTC 60.398 48.000 37.50 23.32 37.16 2.17
3825 4007 4.478686 GGATCATACCATAGGGCCCTATTT 59.521 45.833 37.50 28.68 37.16 1.40
3826 4008 4.047883 GGATCATACCATAGGGCCCTATT 58.952 47.826 37.50 27.35 37.16 1.73
3827 4009 3.636325 GGGATCATACCATAGGGCCCTAT 60.636 52.174 35.03 35.03 39.60 2.57
3828 4010 2.293586 GGGATCATACCATAGGGCCCTA 60.294 54.545 33.76 33.76 37.90 3.53
3829 4011 1.558143 GGGATCATACCATAGGGCCCT 60.558 57.143 31.35 31.35 37.90 5.19
3830 4012 0.919710 GGGATCATACCATAGGGCCC 59.080 60.000 16.46 16.46 37.90 5.80
3831 4013 0.919710 GGGGATCATACCATAGGGCC 59.080 60.000 0.00 0.00 37.90 5.80
3832 4014 1.840635 GAGGGGATCATACCATAGGGC 59.159 57.143 0.00 0.00 37.90 5.19
3833 4015 2.840651 GTGAGGGGATCATACCATAGGG 59.159 54.545 0.00 0.00 40.92 3.53
3834 4016 3.796111 AGTGAGGGGATCATACCATAGG 58.204 50.000 0.00 0.00 40.92 2.57
3835 4017 5.090139 AGAAGTGAGGGGATCATACCATAG 58.910 45.833 0.00 0.00 40.92 2.23
3836 4018 5.093236 AGAAGTGAGGGGATCATACCATA 57.907 43.478 0.00 0.00 40.92 2.74
3837 4019 3.946824 AGAAGTGAGGGGATCATACCAT 58.053 45.455 0.00 0.00 40.92 3.55
3838 4020 3.421394 AGAAGTGAGGGGATCATACCA 57.579 47.619 0.00 0.00 40.92 3.25
3839 4021 3.745797 GCAAGAAGTGAGGGGATCATACC 60.746 52.174 0.00 0.00 40.92 2.73
3840 4022 3.118261 TGCAAGAAGTGAGGGGATCATAC 60.118 47.826 0.00 0.00 40.92 2.39
3841 4023 3.114606 TGCAAGAAGTGAGGGGATCATA 58.885 45.455 0.00 0.00 40.92 2.15
3842 4024 1.918262 TGCAAGAAGTGAGGGGATCAT 59.082 47.619 0.00 0.00 40.92 2.45
3843 4025 1.361204 TGCAAGAAGTGAGGGGATCA 58.639 50.000 0.00 0.00 34.79 2.92
3844 4026 2.295885 CATGCAAGAAGTGAGGGGATC 58.704 52.381 0.00 0.00 0.00 3.36
3845 4027 1.637553 ACATGCAAGAAGTGAGGGGAT 59.362 47.619 0.00 0.00 0.00 3.85
3846 4028 1.003580 GACATGCAAGAAGTGAGGGGA 59.996 52.381 0.00 0.00 0.00 4.81
3847 4029 1.271543 TGACATGCAAGAAGTGAGGGG 60.272 52.381 0.00 0.00 0.00 4.79
3848 4030 2.189594 TGACATGCAAGAAGTGAGGG 57.810 50.000 0.00 0.00 0.00 4.30
3849 4031 3.754850 TCAATGACATGCAAGAAGTGAGG 59.245 43.478 0.00 0.00 0.00 3.86
3850 4032 4.214758 TGTCAATGACATGCAAGAAGTGAG 59.785 41.667 12.63 0.00 37.67 3.51
3851 4033 4.136051 TGTCAATGACATGCAAGAAGTGA 58.864 39.130 12.63 0.00 37.67 3.41
3852 4034 4.473199 CTGTCAATGACATGCAAGAAGTG 58.527 43.478 17.10 0.00 41.94 3.16
3853 4035 3.504906 CCTGTCAATGACATGCAAGAAGT 59.495 43.478 17.10 0.00 41.94 3.01
3854 4036 3.754850 TCCTGTCAATGACATGCAAGAAG 59.245 43.478 17.10 2.40 41.94 2.85
3855 4037 3.753815 TCCTGTCAATGACATGCAAGAA 58.246 40.909 17.10 0.00 41.94 2.52
3856 4038 3.008266 TCTCCTGTCAATGACATGCAAGA 59.992 43.478 17.10 13.24 41.94 3.02
3857 4039 3.340928 TCTCCTGTCAATGACATGCAAG 58.659 45.455 17.10 11.32 41.94 4.01
3858 4040 3.421919 TCTCCTGTCAATGACATGCAA 57.578 42.857 17.10 3.01 41.94 4.08
3859 4041 3.421919 TTCTCCTGTCAATGACATGCA 57.578 42.857 17.10 2.96 41.94 3.96
3860 4042 3.503363 TGTTTCTCCTGTCAATGACATGC 59.497 43.478 17.10 1.89 41.94 4.06
3861 4043 4.999311 TCTGTTTCTCCTGTCAATGACATG 59.001 41.667 17.10 14.11 41.94 3.21
3862 4044 5.221803 ACTCTGTTTCTCCTGTCAATGACAT 60.222 40.000 17.10 0.00 41.94 3.06
3863 4045 4.101585 ACTCTGTTTCTCCTGTCAATGACA 59.898 41.667 15.88 15.88 40.50 3.58
3864 4046 4.450419 CACTCTGTTTCTCCTGTCAATGAC 59.550 45.833 6.41 6.41 0.00 3.06
3865 4047 4.101585 ACACTCTGTTTCTCCTGTCAATGA 59.898 41.667 0.00 0.00 0.00 2.57
3866 4048 4.212847 CACACTCTGTTTCTCCTGTCAATG 59.787 45.833 0.00 0.00 0.00 2.82
3867 4049 4.141620 ACACACTCTGTTTCTCCTGTCAAT 60.142 41.667 0.00 0.00 0.00 2.57
3868 4050 3.197766 ACACACTCTGTTTCTCCTGTCAA 59.802 43.478 0.00 0.00 0.00 3.18
3869 4051 2.766263 ACACACTCTGTTTCTCCTGTCA 59.234 45.455 0.00 0.00 0.00 3.58
3870 4052 3.460857 ACACACTCTGTTTCTCCTGTC 57.539 47.619 0.00 0.00 0.00 3.51
3871 4053 3.197766 TCAACACACTCTGTTTCTCCTGT 59.802 43.478 0.00 0.00 41.50 4.00
3872 4054 3.797039 TCAACACACTCTGTTTCTCCTG 58.203 45.455 0.00 0.00 41.50 3.86
3873 4055 4.487714 TTCAACACACTCTGTTTCTCCT 57.512 40.909 0.00 0.00 41.50 3.69
3874 4056 5.106908 GCTATTCAACACACTCTGTTTCTCC 60.107 44.000 0.00 0.00 41.50 3.71
3875 4057 5.466728 TGCTATTCAACACACTCTGTTTCTC 59.533 40.000 0.00 0.00 41.50 2.87
3876 4058 5.368145 TGCTATTCAACACACTCTGTTTCT 58.632 37.500 0.00 0.00 41.50 2.52
3877 4059 5.673337 TGCTATTCAACACACTCTGTTTC 57.327 39.130 0.00 0.00 41.50 2.78
3878 4060 6.262944 TCAATGCTATTCAACACACTCTGTTT 59.737 34.615 0.00 0.00 41.50 2.83
3879 4061 5.764686 TCAATGCTATTCAACACACTCTGTT 59.235 36.000 0.00 0.00 44.51 3.16
3880 4062 5.180117 GTCAATGCTATTCAACACACTCTGT 59.820 40.000 0.00 0.00 32.89 3.41
3881 4063 5.179929 TGTCAATGCTATTCAACACACTCTG 59.820 40.000 0.00 0.00 0.00 3.35
3882 4064 5.308014 TGTCAATGCTATTCAACACACTCT 58.692 37.500 0.00 0.00 0.00 3.24
3883 4065 5.611796 TGTCAATGCTATTCAACACACTC 57.388 39.130 0.00 0.00 0.00 3.51
3884 4066 6.579666 AATGTCAATGCTATTCAACACACT 57.420 33.333 0.00 0.00 0.00 3.55
3885 4067 7.751732 TCTAATGTCAATGCTATTCAACACAC 58.248 34.615 0.00 0.00 0.00 3.82
3886 4068 7.920160 TCTAATGTCAATGCTATTCAACACA 57.080 32.000 0.00 0.00 0.00 3.72
3887 4069 8.668353 TCTTCTAATGTCAATGCTATTCAACAC 58.332 33.333 0.00 0.00 0.00 3.32
3888 4070 8.791327 TCTTCTAATGTCAATGCTATTCAACA 57.209 30.769 0.00 0.00 0.00 3.33
3916 4098 8.877779 GCCAATGCATTTTGTTTGTTACATATA 58.122 29.630 9.83 0.00 35.31 0.86
3917 4099 7.389884 TGCCAATGCATTTTGTTTGTTACATAT 59.610 29.630 9.83 0.00 44.23 1.78
3918 4100 6.707608 TGCCAATGCATTTTGTTTGTTACATA 59.292 30.769 9.83 0.00 44.23 2.29
3919 4101 5.530171 TGCCAATGCATTTTGTTTGTTACAT 59.470 32.000 9.83 0.00 44.23 2.29
3920 4102 4.877823 TGCCAATGCATTTTGTTTGTTACA 59.122 33.333 9.83 0.00 44.23 2.41
3921 4103 5.415415 TGCCAATGCATTTTGTTTGTTAC 57.585 34.783 9.83 0.00 44.23 2.50
3935 4117 2.359848 TCACTGATGCTAATGCCAATGC 59.640 45.455 0.00 0.00 38.71 3.56
3936 4118 3.379057 TGTCACTGATGCTAATGCCAATG 59.621 43.478 0.00 0.00 38.71 2.82
3937 4119 3.623703 TGTCACTGATGCTAATGCCAAT 58.376 40.909 0.00 0.00 38.71 3.16
3938 4120 3.011818 CTGTCACTGATGCTAATGCCAA 58.988 45.455 0.00 0.00 38.71 4.52
3939 4121 2.236893 TCTGTCACTGATGCTAATGCCA 59.763 45.455 0.00 0.00 38.71 4.92
3940 4122 2.871022 CTCTGTCACTGATGCTAATGCC 59.129 50.000 0.00 0.00 38.71 4.40
3941 4123 2.287373 GCTCTGTCACTGATGCTAATGC 59.713 50.000 0.00 0.00 40.20 3.56
3942 4124 3.794717 AGCTCTGTCACTGATGCTAATG 58.205 45.455 6.79 0.00 0.00 1.90
3943 4125 4.403752 TGTAGCTCTGTCACTGATGCTAAT 59.596 41.667 13.55 0.00 35.26 1.73
3944 4126 3.763897 TGTAGCTCTGTCACTGATGCTAA 59.236 43.478 13.55 6.06 35.26 3.09
3945 4127 3.356290 TGTAGCTCTGTCACTGATGCTA 58.644 45.455 9.99 9.99 32.72 3.49
3946 4128 2.166050 CTGTAGCTCTGTCACTGATGCT 59.834 50.000 11.44 11.44 34.92 3.79
3947 4129 2.094286 ACTGTAGCTCTGTCACTGATGC 60.094 50.000 0.00 0.00 0.00 3.91
3948 4130 3.192212 TGACTGTAGCTCTGTCACTGATG 59.808 47.826 16.26 0.00 45.42 3.07
3949 4131 3.425659 TGACTGTAGCTCTGTCACTGAT 58.574 45.455 16.26 0.00 45.42 2.90
3950 4132 2.863809 TGACTGTAGCTCTGTCACTGA 58.136 47.619 16.26 0.00 45.42 3.41
3955 4137 4.151335 CACACAAATGACTGTAGCTCTGTC 59.849 45.833 12.83 12.83 42.67 3.51
3956 4138 4.060900 CACACAAATGACTGTAGCTCTGT 58.939 43.478 0.00 0.00 0.00 3.41
3957 4139 3.434641 CCACACAAATGACTGTAGCTCTG 59.565 47.826 0.00 0.00 0.00 3.35
3958 4140 3.557898 CCCACACAAATGACTGTAGCTCT 60.558 47.826 0.00 0.00 0.00 4.09
3959 4141 2.744202 CCCACACAAATGACTGTAGCTC 59.256 50.000 0.00 0.00 0.00 4.09
3960 4142 2.783135 CCCACACAAATGACTGTAGCT 58.217 47.619 0.00 0.00 0.00 3.32
3961 4143 1.200020 GCCCACACAAATGACTGTAGC 59.800 52.381 0.00 0.00 0.00 3.58
3962 4144 1.464608 CGCCCACACAAATGACTGTAG 59.535 52.381 0.00 0.00 0.00 2.74
3963 4145 1.518325 CGCCCACACAAATGACTGTA 58.482 50.000 0.00 0.00 0.00 2.74
3964 4146 1.172180 CCGCCCACACAAATGACTGT 61.172 55.000 0.00 0.00 0.00 3.55
3965 4147 1.580942 CCGCCCACACAAATGACTG 59.419 57.895 0.00 0.00 0.00 3.51
3966 4148 1.603455 CCCGCCCACACAAATGACT 60.603 57.895 0.00 0.00 0.00 3.41
3967 4149 2.961768 CCCGCCCACACAAATGAC 59.038 61.111 0.00 0.00 0.00 3.06
3968 4150 2.988684 GCCCGCCCACACAAATGA 60.989 61.111 0.00 0.00 0.00 2.57
3969 4151 4.067913 GGCCCGCCCACACAAATG 62.068 66.667 0.00 0.00 0.00 2.32
3970 4152 4.612279 TGGCCCGCCCACACAAAT 62.612 61.111 0.00 0.00 39.18 2.32
3971 4153 4.841617 TTGGCCCGCCCACACAAA 62.842 61.111 0.00 0.00 45.34 2.83
3972 4154 4.841617 TTTGGCCCGCCCACACAA 62.842 61.111 0.00 0.00 45.34 3.33
3973 4155 4.841617 TTTTGGCCCGCCCACACA 62.842 61.111 0.00 0.00 45.34 3.72
3974 4156 4.293648 GTTTTGGCCCGCCCACAC 62.294 66.667 0.00 0.00 45.34 3.82
3979 4161 3.378602 AATCCGTTTTGGCCCGCC 61.379 61.111 0.00 0.00 37.80 6.13
3980 4162 2.126110 CAATCCGTTTTGGCCCGC 60.126 61.111 0.00 0.00 37.80 6.13
3981 4163 1.528292 TTCCAATCCGTTTTGGCCCG 61.528 55.000 0.00 0.00 44.85 6.13
3982 4164 0.901827 ATTCCAATCCGTTTTGGCCC 59.098 50.000 0.00 0.00 44.85 5.80
3983 4165 3.445805 TCTTATTCCAATCCGTTTTGGCC 59.554 43.478 0.00 0.00 44.85 5.36
3984 4166 4.712122 TCTTATTCCAATCCGTTTTGGC 57.288 40.909 8.38 0.00 44.85 4.52
3985 4167 5.394115 CCCTTCTTATTCCAATCCGTTTTGG 60.394 44.000 7.17 7.17 46.28 3.28
3986 4168 5.650543 CCCTTCTTATTCCAATCCGTTTTG 58.349 41.667 0.00 0.00 0.00 2.44
3987 4169 4.159693 GCCCTTCTTATTCCAATCCGTTTT 59.840 41.667 0.00 0.00 0.00 2.43
3988 4170 3.699538 GCCCTTCTTATTCCAATCCGTTT 59.300 43.478 0.00 0.00 0.00 3.60
3989 4171 3.288092 GCCCTTCTTATTCCAATCCGTT 58.712 45.455 0.00 0.00 0.00 4.44
3990 4172 2.422945 GGCCCTTCTTATTCCAATCCGT 60.423 50.000 0.00 0.00 0.00 4.69
3991 4173 2.230660 GGCCCTTCTTATTCCAATCCG 58.769 52.381 0.00 0.00 0.00 4.18
3992 4174 3.312736 TGGCCCTTCTTATTCCAATCC 57.687 47.619 0.00 0.00 0.00 3.01
3993 4175 6.976934 TTAATGGCCCTTCTTATTCCAATC 57.023 37.500 0.00 0.00 0.00 2.67
3994 4176 7.747809 TTTTAATGGCCCTTCTTATTCCAAT 57.252 32.000 0.00 0.00 0.00 3.16
3995 4177 7.747809 ATTTTAATGGCCCTTCTTATTCCAA 57.252 32.000 0.00 0.00 0.00 3.53
3996 4178 7.747809 AATTTTAATGGCCCTTCTTATTCCA 57.252 32.000 0.00 0.00 0.00 3.53
3997 4179 8.892723 CAAAATTTTAATGGCCCTTCTTATTCC 58.107 33.333 2.44 0.00 0.00 3.01
3998 4180 8.397906 GCAAAATTTTAATGGCCCTTCTTATTC 58.602 33.333 2.44 0.00 0.00 1.75
3999 4181 8.108999 AGCAAAATTTTAATGGCCCTTCTTATT 58.891 29.630 2.44 0.00 0.00 1.40
4000 4182 7.632861 AGCAAAATTTTAATGGCCCTTCTTAT 58.367 30.769 2.44 0.00 0.00 1.73
4001 4183 7.014988 AGCAAAATTTTAATGGCCCTTCTTA 57.985 32.000 2.44 0.00 0.00 2.10
4002 4184 5.879763 AGCAAAATTTTAATGGCCCTTCTT 58.120 33.333 2.44 0.00 0.00 2.52
4003 4185 5.249163 AGAGCAAAATTTTAATGGCCCTTCT 59.751 36.000 2.44 0.17 0.00 2.85
4004 4186 5.491070 AGAGCAAAATTTTAATGGCCCTTC 58.509 37.500 2.44 0.00 0.00 3.46
4005 4187 5.503634 AGAGCAAAATTTTAATGGCCCTT 57.496 34.783 2.44 0.00 0.00 3.95
4006 4188 5.503634 AAGAGCAAAATTTTAATGGCCCT 57.496 34.783 2.44 0.00 0.00 5.19
4007 4189 6.169800 TGTAAGAGCAAAATTTTAATGGCCC 58.830 36.000 2.44 0.00 0.00 5.80
4008 4190 7.294676 CTGTAAGAGCAAAATTTTAATGGCC 57.705 36.000 2.44 0.00 34.07 5.36
4024 4206 3.452627 AGGGTACAATCTGGCTGTAAGAG 59.547 47.826 0.00 0.00 34.07 2.85
4025 4207 3.450904 AGGGTACAATCTGGCTGTAAGA 58.549 45.455 0.00 0.00 34.07 2.10
4026 4208 3.914426 AGGGTACAATCTGGCTGTAAG 57.086 47.619 0.00 0.00 31.27 2.34
4027 4209 5.665812 AGATTAGGGTACAATCTGGCTGTAA 59.334 40.000 6.21 0.00 40.42 2.41
4028 4210 5.216622 AGATTAGGGTACAATCTGGCTGTA 58.783 41.667 6.21 0.00 40.42 2.74
4029 4211 4.040755 AGATTAGGGTACAATCTGGCTGT 58.959 43.478 6.21 0.00 40.42 4.40
4030 4212 4.696479 AGATTAGGGTACAATCTGGCTG 57.304 45.455 6.21 0.00 40.42 4.85
4031 4213 4.721776 TCAAGATTAGGGTACAATCTGGCT 59.278 41.667 7.48 0.00 40.92 4.75
4032 4214 4.816925 GTCAAGATTAGGGTACAATCTGGC 59.183 45.833 7.48 2.05 40.92 4.85
4033 4215 6.051717 CAGTCAAGATTAGGGTACAATCTGG 58.948 44.000 7.48 5.40 40.92 3.86
4034 4216 6.878317 TCAGTCAAGATTAGGGTACAATCTG 58.122 40.000 7.48 3.84 40.92 2.90
4035 4217 7.496346 TTCAGTCAAGATTAGGGTACAATCT 57.504 36.000 0.00 0.00 43.06 2.40
4036 4218 8.738645 ATTTCAGTCAAGATTAGGGTACAATC 57.261 34.615 0.00 0.00 33.43 2.67
4037 4219 9.533831 AAATTTCAGTCAAGATTAGGGTACAAT 57.466 29.630 0.00 0.00 0.00 2.71
4038 4220 8.934023 AAATTTCAGTCAAGATTAGGGTACAA 57.066 30.769 0.00 0.00 0.00 2.41
4039 4221 8.792633 CAAAATTTCAGTCAAGATTAGGGTACA 58.207 33.333 0.00 0.00 0.00 2.90
4040 4222 8.793592 ACAAAATTTCAGTCAAGATTAGGGTAC 58.206 33.333 0.00 0.00 0.00 3.34
4041 4223 8.792633 CACAAAATTTCAGTCAAGATTAGGGTA 58.207 33.333 0.00 0.00 0.00 3.69
4042 4224 7.661040 CACAAAATTTCAGTCAAGATTAGGGT 58.339 34.615 0.00 0.00 0.00 4.34
4043 4225 6.587608 GCACAAAATTTCAGTCAAGATTAGGG 59.412 38.462 0.00 0.00 0.00 3.53
4044 4226 6.306356 CGCACAAAATTTCAGTCAAGATTAGG 59.694 38.462 0.00 0.00 0.00 2.69
4045 4227 6.306356 CCGCACAAAATTTCAGTCAAGATTAG 59.694 38.462 0.00 0.00 0.00 1.73
4046 4228 6.148948 CCGCACAAAATTTCAGTCAAGATTA 58.851 36.000 0.00 0.00 0.00 1.75
4047 4229 4.984161 CCGCACAAAATTTCAGTCAAGATT 59.016 37.500 0.00 0.00 0.00 2.40
4048 4230 4.549458 CCGCACAAAATTTCAGTCAAGAT 58.451 39.130 0.00 0.00 0.00 2.40
4049 4231 3.795150 GCCGCACAAAATTTCAGTCAAGA 60.795 43.478 0.00 0.00 0.00 3.02
4050 4232 2.472488 GCCGCACAAAATTTCAGTCAAG 59.528 45.455 0.00 0.00 0.00 3.02
4051 4233 2.100584 AGCCGCACAAAATTTCAGTCAA 59.899 40.909 0.00 0.00 0.00 3.18
4052 4234 1.680735 AGCCGCACAAAATTTCAGTCA 59.319 42.857 0.00 0.00 0.00 3.41
4053 4235 2.053627 CAGCCGCACAAAATTTCAGTC 58.946 47.619 0.00 0.00 0.00 3.51
4054 4236 1.269726 CCAGCCGCACAAAATTTCAGT 60.270 47.619 0.00 0.00 0.00 3.41
4055 4237 1.421382 CCAGCCGCACAAAATTTCAG 58.579 50.000 0.00 0.00 0.00 3.02
4056 4238 0.033228 CCCAGCCGCACAAAATTTCA 59.967 50.000 0.00 0.00 0.00 2.69
4057 4239 1.291184 GCCCAGCCGCACAAAATTTC 61.291 55.000 0.00 0.00 0.00 2.17
4058 4240 1.301637 GCCCAGCCGCACAAAATTT 60.302 52.632 0.00 0.00 0.00 1.82
4059 4241 2.343387 GCCCAGCCGCACAAAATT 59.657 55.556 0.00 0.00 0.00 1.82
4060 4242 4.054825 CGCCCAGCCGCACAAAAT 62.055 61.111 0.00 0.00 0.00 1.82
4088 4270 3.599285 CTACGGCTGGGCGAAACCA 62.599 63.158 22.37 0.00 42.05 3.67
4089 4271 2.818274 CTACGGCTGGGCGAAACC 60.818 66.667 22.37 0.00 37.93 3.27
4090 4272 3.497031 GCTACGGCTGGGCGAAAC 61.497 66.667 22.37 7.48 35.22 2.78
4100 4282 2.005960 ATCAGTGACGGAGCTACGGC 62.006 60.000 24.83 22.72 43.68 5.68
4101 4283 0.456221 AATCAGTGACGGAGCTACGG 59.544 55.000 24.83 3.96 38.39 4.02
4102 4284 2.855187 GCTAATCAGTGACGGAGCTACG 60.855 54.545 19.02 19.02 40.31 3.51
4103 4285 2.099263 TGCTAATCAGTGACGGAGCTAC 59.901 50.000 18.51 0.00 0.00 3.58
4104 4286 2.099263 GTGCTAATCAGTGACGGAGCTA 59.901 50.000 18.51 7.24 0.00 3.32
4105 4287 1.134965 GTGCTAATCAGTGACGGAGCT 60.135 52.381 18.51 0.00 0.00 4.09
4106 4288 1.134965 AGTGCTAATCAGTGACGGAGC 60.135 52.381 13.37 13.37 0.00 4.70
4107 4289 2.949451 AGTGCTAATCAGTGACGGAG 57.051 50.000 0.00 0.00 0.00 4.63
4108 4290 4.794278 TTTAGTGCTAATCAGTGACGGA 57.206 40.909 0.00 0.00 0.00 4.69
4109 4291 5.637810 TCTTTTTAGTGCTAATCAGTGACGG 59.362 40.000 0.00 0.00 0.00 4.79
4110 4292 6.706055 TCTTTTTAGTGCTAATCAGTGACG 57.294 37.500 0.00 0.00 0.00 4.35
4111 4293 8.342634 TGTTTCTTTTTAGTGCTAATCAGTGAC 58.657 33.333 0.00 0.00 0.00 3.67
4112 4294 8.342634 GTGTTTCTTTTTAGTGCTAATCAGTGA 58.657 33.333 0.00 0.00 0.00 3.41
4113 4295 7.591426 GGTGTTTCTTTTTAGTGCTAATCAGTG 59.409 37.037 0.00 0.00 0.00 3.66
4114 4296 7.284489 TGGTGTTTCTTTTTAGTGCTAATCAGT 59.716 33.333 0.00 0.00 0.00 3.41
4115 4297 7.648142 TGGTGTTTCTTTTTAGTGCTAATCAG 58.352 34.615 0.00 0.00 0.00 2.90
4116 4298 7.575414 TGGTGTTTCTTTTTAGTGCTAATCA 57.425 32.000 0.00 0.00 0.00 2.57
4117 4299 9.129209 GAATGGTGTTTCTTTTTAGTGCTAATC 57.871 33.333 0.00 0.00 0.00 1.75
4118 4300 8.088365 GGAATGGTGTTTCTTTTTAGTGCTAAT 58.912 33.333 0.00 0.00 0.00 1.73
4119 4301 7.286775 AGGAATGGTGTTTCTTTTTAGTGCTAA 59.713 33.333 0.00 0.00 0.00 3.09
4120 4302 6.775629 AGGAATGGTGTTTCTTTTTAGTGCTA 59.224 34.615 0.00 0.00 0.00 3.49
4121 4303 5.598417 AGGAATGGTGTTTCTTTTTAGTGCT 59.402 36.000 0.00 0.00 0.00 4.40
4122 4304 5.691754 CAGGAATGGTGTTTCTTTTTAGTGC 59.308 40.000 0.00 0.00 0.00 4.40
4123 4305 7.038154 TCAGGAATGGTGTTTCTTTTTAGTG 57.962 36.000 0.00 0.00 0.00 2.74
4124 4306 7.342026 AGTTCAGGAATGGTGTTTCTTTTTAGT 59.658 33.333 0.00 0.00 0.00 2.24
4125 4307 7.649306 CAGTTCAGGAATGGTGTTTCTTTTTAG 59.351 37.037 0.00 0.00 0.00 1.85
4126 4308 7.417342 CCAGTTCAGGAATGGTGTTTCTTTTTA 60.417 37.037 0.00 0.00 0.00 1.52
4127 4309 6.340522 CAGTTCAGGAATGGTGTTTCTTTTT 58.659 36.000 0.00 0.00 0.00 1.94
4128 4310 5.163416 CCAGTTCAGGAATGGTGTTTCTTTT 60.163 40.000 0.00 0.00 0.00 2.27
4129 4311 4.342092 CCAGTTCAGGAATGGTGTTTCTTT 59.658 41.667 0.00 0.00 0.00 2.52
4130 4312 3.891366 CCAGTTCAGGAATGGTGTTTCTT 59.109 43.478 0.00 0.00 0.00 2.52
4131 4313 3.117512 ACCAGTTCAGGAATGGTGTTTCT 60.118 43.478 0.00 0.00 45.53 2.52
4132 4314 3.222603 ACCAGTTCAGGAATGGTGTTTC 58.777 45.455 0.00 0.00 45.53 2.78
4133 4315 3.312736 ACCAGTTCAGGAATGGTGTTT 57.687 42.857 0.00 0.00 45.53 2.83
4134 4316 4.447138 TTACCAGTTCAGGAATGGTGTT 57.553 40.909 11.42 0.00 46.64 3.32
4135 4317 4.657814 ATTACCAGTTCAGGAATGGTGT 57.342 40.909 11.42 0.00 46.64 4.16
4136 4318 5.982890 AAATTACCAGTTCAGGAATGGTG 57.017 39.130 11.42 0.00 46.64 4.17
4157 4339 7.693969 ATTCATTGTTTTCCACCAACAAAAA 57.306 28.000 2.56 1.98 45.02 1.94
4158 4340 8.970859 ATATTCATTGTTTTCCACCAACAAAA 57.029 26.923 2.56 0.00 45.02 2.44
4182 4364 9.445786 GTGCGTATGTTTAGCAAAATTGTATAT 57.554 29.630 0.00 0.00 42.93 0.86
4183 4365 7.911205 GGTGCGTATGTTTAGCAAAATTGTATA 59.089 33.333 0.00 0.00 42.93 1.47
4184 4366 6.750039 GGTGCGTATGTTTAGCAAAATTGTAT 59.250 34.615 0.00 0.00 42.93 2.29
4185 4367 6.087522 GGTGCGTATGTTTAGCAAAATTGTA 58.912 36.000 0.00 0.00 42.93 2.41
4186 4368 4.920927 GGTGCGTATGTTTAGCAAAATTGT 59.079 37.500 0.00 0.00 42.93 2.71
4187 4369 5.434514 GGTGCGTATGTTTAGCAAAATTG 57.565 39.130 0.00 0.00 42.93 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.