Multiple sequence alignment - TraesCS2B01G414300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G414300 chr2B 100.000 4974 0 0 1 4974 592057633 592062606 0.000000e+00 9186.0
1 TraesCS2B01G414300 chr2B 89.106 358 34 5 1 356 170949815 170950169 1.640000e-119 440.0
2 TraesCS2B01G414300 chr2B 88.579 359 37 4 1 357 335492824 335493180 2.750000e-117 433.0
3 TraesCS2B01G414300 chr2B 100.000 64 0 0 4911 4974 296327071 296327008 8.750000e-23 119.0
4 TraesCS2B01G414300 chr2A 93.704 2589 108 29 1513 4067 649503011 649505578 0.000000e+00 3827.0
5 TraesCS2B01G414300 chr2A 88.546 1004 61 27 500 1472 649501920 649502900 0.000000e+00 1168.0
6 TraesCS2B01G414300 chr2A 82.682 895 116 21 4050 4911 649507223 649508111 0.000000e+00 758.0
7 TraesCS2B01G414300 chr2A 87.395 357 34 7 1 351 486506329 486505978 2.790000e-107 399.0
8 TraesCS2B01G414300 chr2A 92.188 128 10 0 357 484 649495820 649495947 1.100000e-41 182.0
9 TraesCS2B01G414300 chr2D 92.821 2368 108 23 1513 3849 503451483 503453819 0.000000e+00 3374.0
10 TraesCS2B01G414300 chr2D 88.191 923 80 20 3848 4759 503454017 503454921 0.000000e+00 1074.0
11 TraesCS2B01G414300 chr2D 90.709 635 30 13 357 980 503450315 503450931 0.000000e+00 819.0
12 TraesCS2B01G414300 chr2D 90.745 443 30 8 1035 1472 503450944 503451380 9.280000e-162 580.0
13 TraesCS2B01G414300 chr2D 83.473 357 47 8 5 359 414994178 414994524 6.210000e-84 322.0
14 TraesCS2B01G414300 chr7A 96.522 345 10 2 1 344 300529726 300529383 2.010000e-158 569.0
15 TraesCS2B01G414300 chr7A 82.857 105 16 2 4869 4973 577422151 577422049 5.300000e-15 93.5
16 TraesCS2B01G414300 chrUn 88.366 361 36 6 1 358 150144554 150144197 3.560000e-116 429.0
17 TraesCS2B01G414300 chrUn 88.333 360 36 6 1 357 172383562 172383918 1.280000e-115 427.0
18 TraesCS2B01G414300 chr6A 87.465 359 40 5 1 356 165950364 165950720 4.630000e-110 409.0
19 TraesCS2B01G414300 chr7D 86.150 361 43 7 2 360 213370954 213371309 2.810000e-102 383.0
20 TraesCS2B01G414300 chr6B 100.000 64 0 0 4911 4974 467307542 467307605 8.750000e-23 119.0
21 TraesCS2B01G414300 chr5B 100.000 64 0 0 4911 4974 561035252 561035189 8.750000e-23 119.0
22 TraesCS2B01G414300 chr5B 98.438 64 1 0 4911 4974 383898207 383898270 4.070000e-21 113.0
23 TraesCS2B01G414300 chr5B 97.059 68 1 1 4908 4974 437444955 437445022 4.070000e-21 113.0
24 TraesCS2B01G414300 chr5B 98.438 64 1 0 4911 4974 561027563 561027500 4.070000e-21 113.0
25 TraesCS2B01G414300 chr3B 100.000 64 0 0 4911 4974 591966642 591966705 8.750000e-23 119.0
26 TraesCS2B01G414300 chr1B 100.000 62 0 0 4911 4972 505663203 505663142 1.130000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G414300 chr2B 592057633 592062606 4973 False 9186.000000 9186 100.000000 1 4974 1 chr2B.!!$F3 4973
1 TraesCS2B01G414300 chr2A 649501920 649508111 6191 False 1917.666667 3827 88.310667 500 4911 3 chr2A.!!$F2 4411
2 TraesCS2B01G414300 chr2D 503450315 503454921 4606 False 1461.750000 3374 90.616500 357 4759 4 chr2D.!!$F2 4402

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
253 254 0.034380 TAGAGCTAGGGTGTGCGTCT 60.034 55.0 0.0 0.0 0.00 4.18 F
254 255 0.034380 AGAGCTAGGGTGTGCGTCTA 60.034 55.0 0.0 0.0 0.00 2.59 F
256 257 0.034380 AGCTAGGGTGTGCGTCTAGA 60.034 55.0 0.0 0.0 34.09 2.43 F
1274 1305 0.038526 TTTCTTCGGCCTCTCACGAC 60.039 55.0 0.0 0.0 39.04 4.34 F
2097 2227 0.041238 CACCTGGTACTCCCCTCAGA 59.959 60.0 0.0 0.0 0.00 3.27 F
2359 2495 0.105964 TGGGAGTCACCGTGTTCTTG 59.894 55.0 0.0 0.0 40.11 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1398 1429 0.248134 GGTAAACGCACGCAACAACA 60.248 50.0 0.00 0.00 0.00 3.33 R
2154 2284 0.608130 CGTCATCTGGGTCACAAGGA 59.392 55.0 0.00 0.00 0.00 3.36 R
2273 2409 3.165124 CGTAGAAGAAGAGCTCGAACAC 58.835 50.0 8.37 1.71 0.00 3.32 R
2296 2432 0.417841 AGGGGATGTAGAGGTGGTGT 59.582 55.0 0.00 0.00 0.00 4.16 R
3845 3989 0.379669 ACGGCGATGTACGAACTAGG 59.620 55.0 16.62 0.00 45.77 3.02 R
4366 6378 0.179048 TGTAATGGAGCATCGCCAGG 60.179 55.0 0.00 0.00 36.65 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.616159 TTACAGAAAGGGTGCCAAGC 58.384 50.000 0.00 0.00 0.00 4.01
20 21 0.605319 TACAGAAAGGGTGCCAAGCG 60.605 55.000 0.00 0.00 0.00 4.68
21 22 2.985847 AGAAAGGGTGCCAAGCGC 60.986 61.111 0.00 0.00 38.45 5.92
22 23 4.404654 GAAAGGGTGCCAAGCGCG 62.405 66.667 0.00 0.00 42.08 6.86
28 29 4.999939 GTGCCAAGCGCGGGTTTG 63.000 66.667 19.88 19.88 42.08 2.93
30 31 4.700365 GCCAAGCGCGGGTTTGAC 62.700 66.667 26.65 14.44 36.57 3.18
31 32 3.283684 CCAAGCGCGGGTTTGACA 61.284 61.111 26.65 0.00 36.57 3.58
32 33 2.051345 CAAGCGCGGGTTTGACAC 60.051 61.111 21.82 0.00 36.57 3.67
36 37 4.007940 CGCGGGTTTGACACGGTG 62.008 66.667 6.58 6.58 46.78 4.94
37 38 3.656045 GCGGGTTTGACACGGTGG 61.656 66.667 13.48 0.00 46.78 4.61
38 39 2.203098 CGGGTTTGACACGGTGGT 60.203 61.111 13.48 0.00 42.19 4.16
39 40 2.248835 CGGGTTTGACACGGTGGTC 61.249 63.158 13.48 8.22 42.19 4.02
40 41 1.153127 GGGTTTGACACGGTGGTCA 60.153 57.895 13.48 10.63 45.54 4.02
41 42 0.536460 GGGTTTGACACGGTGGTCAT 60.536 55.000 13.48 0.00 46.37 3.06
42 43 0.872388 GGTTTGACACGGTGGTCATC 59.128 55.000 13.48 1.28 46.37 2.92
43 44 0.511221 GTTTGACACGGTGGTCATCG 59.489 55.000 13.48 1.74 46.37 3.84
44 45 1.225376 TTTGACACGGTGGTCATCGC 61.225 55.000 13.48 0.00 46.37 4.58
45 46 2.094757 TTGACACGGTGGTCATCGCT 62.095 55.000 13.48 0.00 46.37 4.93
46 47 1.245376 TGACACGGTGGTCATCGCTA 61.245 55.000 13.48 0.00 42.56 4.26
47 48 0.801067 GACACGGTGGTCATCGCTAC 60.801 60.000 13.48 0.00 38.78 3.58
48 49 1.518572 CACGGTGGTCATCGCTACC 60.519 63.158 3.31 0.00 38.78 3.18
49 50 1.980232 ACGGTGGTCATCGCTACCA 60.980 57.895 3.31 0.00 44.75 3.25
52 53 4.453454 TGGTCATCGCTACCACCT 57.547 55.556 0.00 0.00 42.10 4.00
53 54 1.897423 TGGTCATCGCTACCACCTG 59.103 57.895 0.00 0.00 42.10 4.00
54 55 1.144057 GGTCATCGCTACCACCTGG 59.856 63.158 0.00 0.00 36.96 4.45
55 56 1.144057 GTCATCGCTACCACCTGGG 59.856 63.158 0.00 0.00 44.81 4.45
56 57 2.203070 CATCGCTACCACCTGGGC 60.203 66.667 0.00 0.00 42.05 5.36
57 58 3.480133 ATCGCTACCACCTGGGCC 61.480 66.667 0.00 0.00 42.05 5.80
58 59 4.715130 TCGCTACCACCTGGGCCT 62.715 66.667 4.53 0.00 42.05 5.19
59 60 3.717294 CGCTACCACCTGGGCCTT 61.717 66.667 4.53 0.00 42.05 4.35
60 61 2.363975 CGCTACCACCTGGGCCTTA 61.364 63.158 4.53 0.00 42.05 2.69
61 62 1.696097 CGCTACCACCTGGGCCTTAT 61.696 60.000 4.53 0.00 42.05 1.73
62 63 0.179018 GCTACCACCTGGGCCTTATG 60.179 60.000 4.53 0.00 42.05 1.90
63 64 0.474184 CTACCACCTGGGCCTTATGG 59.526 60.000 16.07 16.07 42.05 2.74
64 65 0.045008 TACCACCTGGGCCTTATGGA 59.955 55.000 22.22 7.65 42.05 3.41
65 66 0.849094 ACCACCTGGGCCTTATGGAA 60.849 55.000 22.22 0.00 42.05 3.53
66 67 0.334676 CCACCTGGGCCTTATGGAAA 59.665 55.000 13.36 0.00 34.57 3.13
67 68 1.474330 CACCTGGGCCTTATGGAAAC 58.526 55.000 4.53 0.00 34.57 2.78
86 87 3.987404 GCGGAATGCCAGAGTGTT 58.013 55.556 0.00 0.00 37.76 3.32
87 88 1.796796 GCGGAATGCCAGAGTGTTC 59.203 57.895 0.00 0.00 37.76 3.18
88 89 1.648467 GCGGAATGCCAGAGTGTTCC 61.648 60.000 0.00 0.00 37.76 3.62
89 90 0.321564 CGGAATGCCAGAGTGTTCCA 60.322 55.000 0.00 0.00 40.04 3.53
90 91 1.168714 GGAATGCCAGAGTGTTCCAC 58.831 55.000 0.00 0.00 39.86 4.02
91 92 1.545428 GGAATGCCAGAGTGTTCCACA 60.545 52.381 0.00 0.00 39.86 4.17
92 93 1.808945 GAATGCCAGAGTGTTCCACAG 59.191 52.381 0.00 0.00 36.74 3.66
93 94 0.037303 ATGCCAGAGTGTTCCACAGG 59.963 55.000 0.00 0.00 36.74 4.00
94 95 1.053835 TGCCAGAGTGTTCCACAGGA 61.054 55.000 0.00 0.00 36.74 3.86
95 96 0.326264 GCCAGAGTGTTCCACAGGAT 59.674 55.000 0.00 0.00 36.74 3.24
96 97 1.271597 GCCAGAGTGTTCCACAGGATT 60.272 52.381 0.00 0.00 36.74 3.01
97 98 2.027192 GCCAGAGTGTTCCACAGGATTA 60.027 50.000 0.00 0.00 36.74 1.75
98 99 3.559171 GCCAGAGTGTTCCACAGGATTAA 60.559 47.826 0.00 0.00 36.74 1.40
99 100 4.848357 CCAGAGTGTTCCACAGGATTAAT 58.152 43.478 0.00 0.00 36.74 1.40
100 101 4.878397 CCAGAGTGTTCCACAGGATTAATC 59.122 45.833 6.93 6.93 36.74 1.75
101 102 5.491070 CAGAGTGTTCCACAGGATTAATCA 58.509 41.667 17.07 0.00 36.74 2.57
102 103 5.939883 CAGAGTGTTCCACAGGATTAATCAA 59.060 40.000 17.07 0.00 36.74 2.57
103 104 5.940470 AGAGTGTTCCACAGGATTAATCAAC 59.060 40.000 17.07 11.38 36.74 3.18
104 105 5.630121 AGTGTTCCACAGGATTAATCAACA 58.370 37.500 17.07 13.58 36.74 3.33
105 106 5.707298 AGTGTTCCACAGGATTAATCAACAG 59.293 40.000 17.07 6.06 36.74 3.16
106 107 5.705441 GTGTTCCACAGGATTAATCAACAGA 59.295 40.000 17.07 4.41 34.08 3.41
107 108 6.375455 GTGTTCCACAGGATTAATCAACAGAT 59.625 38.462 17.07 0.00 34.08 2.90
108 109 6.375174 TGTTCCACAGGATTAATCAACAGATG 59.625 38.462 17.07 7.80 0.00 2.90
109 110 6.312141 TCCACAGGATTAATCAACAGATGA 57.688 37.500 17.07 2.28 43.67 2.92
110 111 6.115446 TCCACAGGATTAATCAACAGATGAC 58.885 40.000 17.07 0.00 41.93 3.06
111 112 5.007039 CCACAGGATTAATCAACAGATGACG 59.993 44.000 17.07 0.00 41.93 4.35
112 113 5.007039 CACAGGATTAATCAACAGATGACGG 59.993 44.000 17.07 0.42 41.93 4.79
113 114 4.024556 CAGGATTAATCAACAGATGACGGC 60.025 45.833 17.07 0.00 41.93 5.68
114 115 3.059597 GGATTAATCAACAGATGACGGCG 60.060 47.826 17.07 4.80 41.93 6.46
115 116 1.286501 TAATCAACAGATGACGGCGC 58.713 50.000 6.90 0.00 41.93 6.53
116 117 1.369091 AATCAACAGATGACGGCGCC 61.369 55.000 19.07 19.07 41.93 6.53
117 118 3.853330 CAACAGATGACGGCGCCG 61.853 66.667 44.88 44.88 46.03 6.46
143 144 4.240103 CCTGGCCATCATCGCGGA 62.240 66.667 5.51 0.00 0.00 5.54
144 145 2.664185 CTGGCCATCATCGCGGAG 60.664 66.667 5.51 0.00 0.00 4.63
159 160 1.661341 CGGAGCTCAAAGAATGGAGG 58.339 55.000 17.19 0.00 0.00 4.30
160 161 1.387539 GGAGCTCAAAGAATGGAGGC 58.612 55.000 17.19 0.00 0.00 4.70
161 162 1.064832 GGAGCTCAAAGAATGGAGGCT 60.065 52.381 17.19 0.00 34.37 4.58
162 163 2.171448 GGAGCTCAAAGAATGGAGGCTA 59.829 50.000 17.19 0.00 32.82 3.93
163 164 3.465871 GAGCTCAAAGAATGGAGGCTAG 58.534 50.000 9.40 0.00 32.82 3.42
164 165 1.946081 GCTCAAAGAATGGAGGCTAGC 59.054 52.381 6.04 6.04 0.00 3.42
165 166 2.570135 CTCAAAGAATGGAGGCTAGCC 58.430 52.381 27.19 27.19 0.00 3.93
166 167 1.134401 TCAAAGAATGGAGGCTAGCCG 60.134 52.381 27.83 9.76 41.95 5.52
167 168 0.181350 AAAGAATGGAGGCTAGCCGG 59.819 55.000 27.83 0.00 41.95 6.13
168 169 0.983378 AAGAATGGAGGCTAGCCGGT 60.983 55.000 27.83 12.12 41.95 5.28
169 170 0.983378 AGAATGGAGGCTAGCCGGTT 60.983 55.000 27.83 19.58 41.95 4.44
170 171 0.107165 GAATGGAGGCTAGCCGGTTT 60.107 55.000 27.83 19.01 41.95 3.27
171 172 0.394352 AATGGAGGCTAGCCGGTTTG 60.394 55.000 27.83 0.00 41.95 2.93
172 173 2.124695 GGAGGCTAGCCGGTTTGG 60.125 66.667 27.83 0.00 41.95 3.28
173 174 2.124695 GAGGCTAGCCGGTTTGGG 60.125 66.667 27.83 0.00 41.95 4.12
174 175 2.609610 AGGCTAGCCGGTTTGGGA 60.610 61.111 27.83 0.00 41.95 4.37
175 176 2.124695 GGCTAGCCGGTTTGGGAG 60.125 66.667 20.16 0.00 38.63 4.30
176 177 2.124695 GCTAGCCGGTTTGGGAGG 60.125 66.667 2.29 0.00 38.63 4.30
177 178 2.666098 GCTAGCCGGTTTGGGAGGA 61.666 63.158 2.29 0.00 38.63 3.71
178 179 1.522569 CTAGCCGGTTTGGGAGGAG 59.477 63.158 1.90 0.00 38.63 3.69
179 180 1.972660 CTAGCCGGTTTGGGAGGAGG 61.973 65.000 1.90 0.00 38.63 4.30
180 181 2.465010 TAGCCGGTTTGGGAGGAGGA 62.465 60.000 1.90 0.00 38.63 3.71
181 182 2.990479 CCGGTTTGGGAGGAGGAG 59.010 66.667 0.00 0.00 0.00 3.69
182 183 2.670148 CCGGTTTGGGAGGAGGAGG 61.670 68.421 0.00 0.00 0.00 4.30
183 184 2.677848 GGTTTGGGAGGAGGAGGC 59.322 66.667 0.00 0.00 0.00 4.70
184 185 1.925972 GGTTTGGGAGGAGGAGGCT 60.926 63.158 0.00 0.00 0.00 4.58
185 186 1.501654 GGTTTGGGAGGAGGAGGCTT 61.502 60.000 0.00 0.00 0.00 4.35
186 187 0.405973 GTTTGGGAGGAGGAGGCTTT 59.594 55.000 0.00 0.00 0.00 3.51
187 188 0.405585 TTTGGGAGGAGGAGGCTTTG 59.594 55.000 0.00 0.00 0.00 2.77
188 189 1.500783 TTGGGAGGAGGAGGCTTTGG 61.501 60.000 0.00 0.00 0.00 3.28
189 190 2.273776 GGAGGAGGAGGCTTTGGC 59.726 66.667 0.00 0.00 37.82 4.52
190 191 2.606587 GGAGGAGGAGGCTTTGGCA 61.607 63.158 0.00 0.00 40.87 4.92
191 192 1.377856 GAGGAGGAGGCTTTGGCAC 60.378 63.158 0.00 0.00 40.87 5.01
192 193 2.129555 GAGGAGGAGGCTTTGGCACA 62.130 60.000 0.00 0.00 40.87 4.57
193 194 1.000396 GGAGGAGGCTTTGGCACAT 60.000 57.895 0.00 0.00 39.30 3.21
194 195 0.613012 GGAGGAGGCTTTGGCACATT 60.613 55.000 0.00 0.00 39.30 2.71
195 196 1.260544 GAGGAGGCTTTGGCACATTT 58.739 50.000 0.00 0.00 39.30 2.32
196 197 1.620323 GAGGAGGCTTTGGCACATTTT 59.380 47.619 0.00 0.00 39.30 1.82
197 198 1.345415 AGGAGGCTTTGGCACATTTTG 59.655 47.619 0.00 0.00 39.30 2.44
198 199 1.070601 GGAGGCTTTGGCACATTTTGT 59.929 47.619 0.00 0.00 39.30 2.83
210 211 3.715628 ACATTTTGTGAGAGTGTTGGC 57.284 42.857 0.00 0.00 0.00 4.52
211 212 3.023119 ACATTTTGTGAGAGTGTTGGCA 58.977 40.909 0.00 0.00 0.00 4.92
212 213 3.638160 ACATTTTGTGAGAGTGTTGGCAT 59.362 39.130 0.00 0.00 0.00 4.40
213 214 4.826733 ACATTTTGTGAGAGTGTTGGCATA 59.173 37.500 0.00 0.00 0.00 3.14
214 215 5.048504 ACATTTTGTGAGAGTGTTGGCATAG 60.049 40.000 0.00 0.00 0.00 2.23
215 216 2.768253 TGTGAGAGTGTTGGCATAGG 57.232 50.000 0.00 0.00 0.00 2.57
216 217 2.256306 TGTGAGAGTGTTGGCATAGGA 58.744 47.619 0.00 0.00 0.00 2.94
217 218 2.840038 TGTGAGAGTGTTGGCATAGGAT 59.160 45.455 0.00 0.00 0.00 3.24
218 219 4.030216 TGTGAGAGTGTTGGCATAGGATA 58.970 43.478 0.00 0.00 0.00 2.59
219 220 4.469586 TGTGAGAGTGTTGGCATAGGATAA 59.530 41.667 0.00 0.00 0.00 1.75
220 221 4.811557 GTGAGAGTGTTGGCATAGGATAAC 59.188 45.833 0.00 0.00 0.00 1.89
221 222 4.716784 TGAGAGTGTTGGCATAGGATAACT 59.283 41.667 0.00 0.00 0.00 2.24
222 223 5.028549 AGAGTGTTGGCATAGGATAACTG 57.971 43.478 0.00 0.00 0.00 3.16
223 224 4.471386 AGAGTGTTGGCATAGGATAACTGT 59.529 41.667 0.00 0.00 0.00 3.55
224 225 5.661312 AGAGTGTTGGCATAGGATAACTGTA 59.339 40.000 0.00 0.00 0.00 2.74
225 226 5.918608 AGTGTTGGCATAGGATAACTGTAG 58.081 41.667 0.00 0.00 0.00 2.74
226 227 5.057149 GTGTTGGCATAGGATAACTGTAGG 58.943 45.833 0.00 0.00 0.00 3.18
227 228 4.102524 TGTTGGCATAGGATAACTGTAGGG 59.897 45.833 0.00 0.00 0.00 3.53
228 229 3.936461 TGGCATAGGATAACTGTAGGGT 58.064 45.455 0.00 0.00 0.00 4.34
229 230 3.646162 TGGCATAGGATAACTGTAGGGTG 59.354 47.826 0.00 0.00 0.00 4.61
230 231 3.646637 GGCATAGGATAACTGTAGGGTGT 59.353 47.826 0.00 0.00 0.00 4.16
231 232 4.102681 GGCATAGGATAACTGTAGGGTGTT 59.897 45.833 0.00 0.00 0.00 3.32
232 233 5.057149 GCATAGGATAACTGTAGGGTGTTG 58.943 45.833 0.00 0.00 0.00 3.33
233 234 3.629142 AGGATAACTGTAGGGTGTTGC 57.371 47.619 0.00 0.00 0.00 4.17
234 235 3.182152 AGGATAACTGTAGGGTGTTGCT 58.818 45.455 0.00 0.00 0.00 3.91
235 236 4.359105 AGGATAACTGTAGGGTGTTGCTA 58.641 43.478 0.00 0.00 0.00 3.49
236 237 4.406003 AGGATAACTGTAGGGTGTTGCTAG 59.594 45.833 0.00 0.00 0.00 3.42
237 238 4.404715 GGATAACTGTAGGGTGTTGCTAGA 59.595 45.833 0.00 0.00 0.00 2.43
238 239 3.963428 AACTGTAGGGTGTTGCTAGAG 57.037 47.619 0.00 0.00 0.00 2.43
239 240 1.550976 ACTGTAGGGTGTTGCTAGAGC 59.449 52.381 0.00 0.00 42.50 4.09
240 241 1.827969 CTGTAGGGTGTTGCTAGAGCT 59.172 52.381 2.72 0.00 42.66 4.09
241 242 3.024547 CTGTAGGGTGTTGCTAGAGCTA 58.975 50.000 2.72 0.00 42.66 3.32
242 243 3.024547 TGTAGGGTGTTGCTAGAGCTAG 58.975 50.000 2.72 0.13 42.66 3.42
243 244 1.490574 AGGGTGTTGCTAGAGCTAGG 58.509 55.000 2.72 0.00 42.66 3.02
244 245 0.466124 GGGTGTTGCTAGAGCTAGGG 59.534 60.000 2.72 0.00 42.66 3.53
245 246 1.196012 GGTGTTGCTAGAGCTAGGGT 58.804 55.000 2.72 0.00 42.66 4.34
246 247 1.134670 GGTGTTGCTAGAGCTAGGGTG 60.135 57.143 2.72 0.00 42.66 4.61
247 248 1.550976 GTGTTGCTAGAGCTAGGGTGT 59.449 52.381 2.72 0.00 42.66 4.16
248 249 1.550524 TGTTGCTAGAGCTAGGGTGTG 59.449 52.381 2.72 0.00 42.66 3.82
249 250 0.537188 TTGCTAGAGCTAGGGTGTGC 59.463 55.000 2.72 0.00 42.66 4.57
250 251 1.066587 GCTAGAGCTAGGGTGTGCG 59.933 63.158 6.66 0.00 38.21 5.34
251 252 1.668101 GCTAGAGCTAGGGTGTGCGT 61.668 60.000 6.66 0.00 38.21 5.24
252 253 0.382515 CTAGAGCTAGGGTGTGCGTC 59.617 60.000 0.00 0.00 0.00 5.19
253 254 0.034380 TAGAGCTAGGGTGTGCGTCT 60.034 55.000 0.00 0.00 0.00 4.18
254 255 0.034380 AGAGCTAGGGTGTGCGTCTA 60.034 55.000 0.00 0.00 0.00 2.59
255 256 0.382515 GAGCTAGGGTGTGCGTCTAG 59.617 60.000 0.00 0.00 35.02 2.43
256 257 0.034380 AGCTAGGGTGTGCGTCTAGA 60.034 55.000 0.00 0.00 34.09 2.43
257 258 0.100861 GCTAGGGTGTGCGTCTAGAC 59.899 60.000 13.18 13.18 34.09 2.59
267 268 4.694102 GTCTAGACGGAAGCTCGC 57.306 61.111 7.22 0.00 0.00 5.03
268 269 2.099994 GTCTAGACGGAAGCTCGCT 58.900 57.895 7.22 0.00 0.00 4.93
269 270 0.452585 GTCTAGACGGAAGCTCGCTT 59.547 55.000 7.22 3.43 39.23 4.68
276 277 4.261888 GAAGCTCGCTTCCGTTCA 57.738 55.556 18.43 0.00 44.76 3.18
277 278 2.528797 GAAGCTCGCTTCCGTTCAA 58.471 52.632 18.43 0.00 44.76 2.69
278 279 0.865769 GAAGCTCGCTTCCGTTCAAA 59.134 50.000 18.43 0.00 44.76 2.69
279 280 1.263217 GAAGCTCGCTTCCGTTCAAAA 59.737 47.619 18.43 0.00 44.76 2.44
280 281 0.586802 AGCTCGCTTCCGTTCAAAAC 59.413 50.000 0.00 0.00 35.54 2.43
281 282 0.586802 GCTCGCTTCCGTTCAAAACT 59.413 50.000 0.00 0.00 35.54 2.66
282 283 1.002792 GCTCGCTTCCGTTCAAAACTT 60.003 47.619 0.00 0.00 35.54 2.66
283 284 2.540973 GCTCGCTTCCGTTCAAAACTTT 60.541 45.455 0.00 0.00 35.54 2.66
284 285 3.289076 CTCGCTTCCGTTCAAAACTTTC 58.711 45.455 0.00 0.00 35.54 2.62
285 286 2.940410 TCGCTTCCGTTCAAAACTTTCT 59.060 40.909 0.00 0.00 35.54 2.52
286 287 3.375922 TCGCTTCCGTTCAAAACTTTCTT 59.624 39.130 0.00 0.00 35.54 2.52
287 288 3.482110 CGCTTCCGTTCAAAACTTTCTTG 59.518 43.478 0.00 0.00 0.00 3.02
288 289 4.421058 GCTTCCGTTCAAAACTTTCTTGT 58.579 39.130 0.00 0.00 0.00 3.16
289 290 5.575019 GCTTCCGTTCAAAACTTTCTTGTA 58.425 37.500 0.00 0.00 0.00 2.41
290 291 6.206498 GCTTCCGTTCAAAACTTTCTTGTAT 58.794 36.000 0.00 0.00 0.00 2.29
291 292 7.357303 GCTTCCGTTCAAAACTTTCTTGTATA 58.643 34.615 0.00 0.00 0.00 1.47
292 293 8.021396 GCTTCCGTTCAAAACTTTCTTGTATAT 58.979 33.333 0.00 0.00 0.00 0.86
293 294 9.893305 CTTCCGTTCAAAACTTTCTTGTATATT 57.107 29.630 0.00 0.00 0.00 1.28
294 295 9.672086 TTCCGTTCAAAACTTTCTTGTATATTG 57.328 29.630 0.00 0.00 0.00 1.90
295 296 9.058174 TCCGTTCAAAACTTTCTTGTATATTGA 57.942 29.630 0.00 0.00 0.00 2.57
296 297 9.840427 CCGTTCAAAACTTTCTTGTATATTGAT 57.160 29.630 0.00 0.00 0.00 2.57
304 305 7.701445 ACTTTCTTGTATATTGATGCTCTTGC 58.299 34.615 0.00 0.00 40.20 4.01
305 306 7.555554 ACTTTCTTGTATATTGATGCTCTTGCT 59.444 33.333 0.00 0.00 40.48 3.91
306 307 7.870509 TTCTTGTATATTGATGCTCTTGCTT 57.129 32.000 0.00 0.00 40.48 3.91
307 308 7.870509 TCTTGTATATTGATGCTCTTGCTTT 57.129 32.000 0.00 0.00 40.48 3.51
308 309 8.284945 TCTTGTATATTGATGCTCTTGCTTTT 57.715 30.769 0.00 0.00 40.48 2.27
309 310 8.400947 TCTTGTATATTGATGCTCTTGCTTTTC 58.599 33.333 0.00 0.00 40.48 2.29
310 311 7.870509 TGTATATTGATGCTCTTGCTTTTCT 57.129 32.000 0.00 0.00 40.48 2.52
311 312 7.923888 TGTATATTGATGCTCTTGCTTTTCTC 58.076 34.615 0.00 0.00 40.48 2.87
312 313 7.772292 TGTATATTGATGCTCTTGCTTTTCTCT 59.228 33.333 0.00 0.00 40.48 3.10
313 314 5.564048 ATTGATGCTCTTGCTTTTCTCTC 57.436 39.130 0.00 0.00 40.48 3.20
314 315 3.341823 TGATGCTCTTGCTTTTCTCTCC 58.658 45.455 0.00 0.00 40.48 3.71
315 316 3.008813 TGATGCTCTTGCTTTTCTCTCCT 59.991 43.478 0.00 0.00 40.48 3.69
316 317 4.223700 TGATGCTCTTGCTTTTCTCTCCTA 59.776 41.667 0.00 0.00 40.48 2.94
317 318 4.833478 TGCTCTTGCTTTTCTCTCCTAT 57.167 40.909 0.00 0.00 40.48 2.57
318 319 5.939764 TGCTCTTGCTTTTCTCTCCTATA 57.060 39.130 0.00 0.00 40.48 1.31
319 320 6.299805 TGCTCTTGCTTTTCTCTCCTATAA 57.700 37.500 0.00 0.00 40.48 0.98
320 321 6.711277 TGCTCTTGCTTTTCTCTCCTATAAA 58.289 36.000 0.00 0.00 40.48 1.40
321 322 7.168219 TGCTCTTGCTTTTCTCTCCTATAAAA 58.832 34.615 0.00 0.00 40.48 1.52
322 323 7.335422 TGCTCTTGCTTTTCTCTCCTATAAAAG 59.665 37.037 0.00 0.00 41.17 2.27
323 324 7.335673 GCTCTTGCTTTTCTCTCCTATAAAAGT 59.664 37.037 0.00 0.00 40.62 2.66
324 325 9.877178 CTCTTGCTTTTCTCTCCTATAAAAGTA 57.123 33.333 0.00 0.00 40.62 2.24
327 328 9.449719 TTGCTTTTCTCTCCTATAAAAGTAAGG 57.550 33.333 0.00 0.00 38.79 2.69
328 329 8.603304 TGCTTTTCTCTCCTATAAAAGTAAGGT 58.397 33.333 0.00 0.00 40.62 3.50
332 333 7.269477 TCTCTCCTATAAAAGTAAGGTACGC 57.731 40.000 0.00 0.00 0.00 4.42
333 334 6.264067 TCTCTCCTATAAAAGTAAGGTACGCC 59.736 42.308 0.00 0.00 0.00 5.68
349 350 3.226884 GCCTTTGGCGTACTCTCAA 57.773 52.632 0.00 0.00 39.62 3.02
350 351 1.519408 GCCTTTGGCGTACTCTCAAA 58.481 50.000 0.00 0.00 39.62 2.69
351 352 1.877443 GCCTTTGGCGTACTCTCAAAA 59.123 47.619 0.00 0.00 39.62 2.44
352 353 2.292292 GCCTTTGGCGTACTCTCAAAAA 59.708 45.455 0.00 0.00 39.62 1.94
372 373 1.534729 AAAATCTTTTCGGGCTCGCT 58.465 45.000 0.00 0.00 36.13 4.93
430 431 2.106938 CTGATTAGCCGGCGAGCA 59.893 61.111 23.20 21.22 34.23 4.26
482 483 4.612412 TCCGTGGGTGTTCGGTGC 62.612 66.667 3.64 0.00 45.88 5.01
556 557 1.348064 TCATCAAGTTGACCGAGGGT 58.652 50.000 7.96 0.00 39.44 4.34
700 705 3.005472 ACAGTAATATACACAGGCGCGAT 59.995 43.478 12.10 0.00 0.00 4.58
781 794 6.427150 GGTGATAAATACGTGCGAATCAAAT 58.573 36.000 0.00 0.00 0.00 2.32
784 797 9.040543 GTGATAAATACGTGCGAATCAAATATG 57.959 33.333 0.00 0.00 0.00 1.78
785 798 8.227119 TGATAAATACGTGCGAATCAAATATGG 58.773 33.333 0.00 0.00 0.00 2.74
787 800 7.485418 AAATACGTGCGAATCAAATATGGTA 57.515 32.000 0.00 0.00 0.00 3.25
809 824 0.460311 ACGGCGAATCAAGGAGTAGG 59.540 55.000 16.62 0.00 0.00 3.18
843 860 4.120589 TCAATGCATTACCGCGTAATACA 58.879 39.130 12.53 10.51 36.70 2.29
883 900 1.001406 GATTCCCTGCCACTATCTCCG 59.999 57.143 0.00 0.00 0.00 4.63
989 1020 5.772393 TTTAGGAAGGCATTTCTGTCCTA 57.228 39.130 1.12 0.00 39.46 2.94
994 1025 3.902881 AGGCATTTCTGTCCTAGAGTG 57.097 47.619 0.00 0.00 36.61 3.51
1000 1031 3.808834 TTCTGTCCTAGAGTGTCTGGA 57.191 47.619 0.00 0.00 36.61 3.86
1019 1050 0.690762 AGTGACCAAATACGGTGGCT 59.309 50.000 0.00 0.00 40.22 4.75
1022 1053 1.084289 GACCAAATACGGTGGCTGAC 58.916 55.000 0.00 0.00 40.22 3.51
1026 1057 2.422597 CAAATACGGTGGCTGACTGAA 58.577 47.619 2.68 0.00 34.65 3.02
1044 1075 3.508840 CGCGGGGGATTGTGAAGC 61.509 66.667 0.00 0.00 0.00 3.86
1055 1086 3.603532 GATTGTGAAGCTGAGATGGACA 58.396 45.455 0.00 0.00 0.00 4.02
1168 1199 0.689412 TCGTGGGGTGGCTCATGATA 60.689 55.000 0.00 0.00 0.00 2.15
1262 1293 5.518847 GGGAAACAAGGTTTTTCTTTCTTCG 59.481 40.000 0.00 0.00 34.06 3.79
1263 1294 5.518847 GGAAACAAGGTTTTTCTTTCTTCGG 59.481 40.000 0.00 0.00 34.06 4.30
1272 1303 0.243907 TCTTTCTTCGGCCTCTCACG 59.756 55.000 0.00 0.00 0.00 4.35
1273 1304 0.243907 CTTTCTTCGGCCTCTCACGA 59.756 55.000 0.00 0.00 37.33 4.35
1274 1305 0.038526 TTTCTTCGGCCTCTCACGAC 60.039 55.000 0.00 0.00 39.04 4.34
1275 1306 0.894184 TTCTTCGGCCTCTCACGACT 60.894 55.000 0.00 0.00 39.04 4.18
1276 1307 0.894184 TCTTCGGCCTCTCACGACTT 60.894 55.000 0.00 0.00 39.04 3.01
1281 1312 1.290324 GCCTCTCACGACTTGCTGA 59.710 57.895 0.00 0.00 0.00 4.26
1289 1320 2.357323 TCACGACTTGCTGAAATTGCAA 59.643 40.909 0.00 0.00 46.48 4.08
1297 1328 2.159324 TGCTGAAATTGCAACGTTGTCA 60.159 40.909 27.78 22.18 37.51 3.58
1314 1345 4.395959 TGTCAGTTTTCACGAGGTACTT 57.604 40.909 0.00 0.00 41.55 2.24
1398 1429 0.973632 TCCCAGTGCTGTTCGTGTAT 59.026 50.000 0.00 0.00 0.00 2.29
1484 1518 4.736126 CCAGGTATGGTCAAATTTTCCC 57.264 45.455 6.69 2.25 42.17 3.97
1485 1519 3.130340 CCAGGTATGGTCAAATTTTCCCG 59.870 47.826 6.69 0.00 42.17 5.14
1486 1520 3.130340 CAGGTATGGTCAAATTTTCCCGG 59.870 47.826 0.00 0.00 0.00 5.73
1488 1522 1.937191 ATGGTCAAATTTTCCCGGCT 58.063 45.000 0.00 0.00 0.00 5.52
1490 1524 2.877866 TGGTCAAATTTTCCCGGCTAA 58.122 42.857 0.00 0.00 0.00 3.09
1491 1525 3.231818 TGGTCAAATTTTCCCGGCTAAA 58.768 40.909 0.00 0.00 0.00 1.85
1493 1527 4.101119 TGGTCAAATTTTCCCGGCTAAAAA 59.899 37.500 14.56 11.88 30.20 1.94
1494 1528 4.449743 GGTCAAATTTTCCCGGCTAAAAAC 59.550 41.667 14.56 9.42 30.20 2.43
1500 1588 2.660670 TCCCGGCTAAAAACAAGGAA 57.339 45.000 0.00 0.00 0.00 3.36
1523 1627 1.725641 TTCGCATGTAGCCACAGAAG 58.274 50.000 0.00 0.00 41.38 2.85
1531 1635 1.719780 GTAGCCACAGAAGAAACGACG 59.280 52.381 0.00 0.00 0.00 5.12
1536 1640 2.806244 CCACAGAAGAAACGACGGAAAT 59.194 45.455 0.00 0.00 0.00 2.17
1538 1642 4.455124 CACAGAAGAAACGACGGAAATTC 58.545 43.478 0.00 0.00 0.00 2.17
1540 1644 3.746492 CAGAAGAAACGACGGAAATTCCT 59.254 43.478 10.64 0.00 33.30 3.36
1541 1645 3.746492 AGAAGAAACGACGGAAATTCCTG 59.254 43.478 10.64 6.41 33.30 3.86
1542 1646 3.396260 AGAAACGACGGAAATTCCTGA 57.604 42.857 10.64 0.00 33.30 3.86
1543 1647 3.939066 AGAAACGACGGAAATTCCTGAT 58.061 40.909 10.64 0.00 33.30 2.90
1545 1649 5.484715 AGAAACGACGGAAATTCCTGATTA 58.515 37.500 10.64 0.00 33.30 1.75
1570 1681 5.469373 TGCTTATGTTTAGCACGAGAATG 57.531 39.130 0.00 0.00 43.30 2.67
1574 1688 2.710377 TGTTTAGCACGAGAATGGCAT 58.290 42.857 0.00 0.00 0.00 4.40
1622 1736 3.822192 CGCTGGGGATCGTGACGA 61.822 66.667 11.14 11.14 41.13 4.20
1688 1802 2.030823 TGGTTCTACTACGCGTACATCG 59.969 50.000 16.41 8.35 43.12 3.84
1744 1861 2.729882 CGAGAAACTGTAAGGAACCACG 59.270 50.000 0.00 0.00 39.30 4.94
1748 1865 1.666553 CTGTAAGGAACCACGCGCA 60.667 57.895 5.73 0.00 0.00 6.09
1775 1892 3.547601 CCGGTCGACACAAAATTGTTAC 58.452 45.455 18.91 0.00 39.91 2.50
1776 1893 3.249080 CCGGTCGACACAAAATTGTTACT 59.751 43.478 18.91 0.00 39.91 2.24
1777 1894 4.260866 CCGGTCGACACAAAATTGTTACTT 60.261 41.667 18.91 0.00 39.91 2.24
1778 1895 5.050227 CCGGTCGACACAAAATTGTTACTTA 60.050 40.000 18.91 0.00 39.91 2.24
1782 1899 7.404203 GTCGACACAAAATTGTTACTTACTGT 58.596 34.615 11.55 0.00 39.91 3.55
2014 2144 4.738998 TGGCTGGGGAACATGGCG 62.739 66.667 0.00 0.00 0.00 5.69
2097 2227 0.041238 CACCTGGTACTCCCCTCAGA 59.959 60.000 0.00 0.00 0.00 3.27
2102 2232 1.204146 GGTACTCCCCTCAGATGCAA 58.796 55.000 0.00 0.00 0.00 4.08
2103 2233 1.134371 GGTACTCCCCTCAGATGCAAC 60.134 57.143 0.00 0.00 0.00 4.17
2104 2234 1.134371 GTACTCCCCTCAGATGCAACC 60.134 57.143 0.00 0.00 0.00 3.77
2105 2235 0.842030 ACTCCCCTCAGATGCAACCA 60.842 55.000 0.00 0.00 0.00 3.67
2106 2236 0.549950 CTCCCCTCAGATGCAACCAT 59.450 55.000 0.00 0.00 0.00 3.55
2107 2237 0.256752 TCCCCTCAGATGCAACCATG 59.743 55.000 0.00 0.00 0.00 3.66
2123 2253 5.391736 GCAACCATGTCTTCAAGATTCAGAG 60.392 44.000 0.00 0.00 0.00 3.35
2126 2256 6.638610 ACCATGTCTTCAAGATTCAGAGTAG 58.361 40.000 0.00 0.00 0.00 2.57
2128 2258 5.667539 TGTCTTCAAGATTCAGAGTAGGG 57.332 43.478 0.00 0.00 0.00 3.53
2129 2259 5.087323 TGTCTTCAAGATTCAGAGTAGGGT 58.913 41.667 0.00 0.00 0.00 4.34
2130 2260 5.544176 TGTCTTCAAGATTCAGAGTAGGGTT 59.456 40.000 0.00 0.00 0.00 4.11
2131 2261 5.872070 GTCTTCAAGATTCAGAGTAGGGTTG 59.128 44.000 0.00 0.00 0.00 3.77
2132 2262 4.826274 TCAAGATTCAGAGTAGGGTTGG 57.174 45.455 0.00 0.00 0.00 3.77
2133 2263 3.519510 TCAAGATTCAGAGTAGGGTTGGG 59.480 47.826 0.00 0.00 0.00 4.12
2151 2281 2.039348 TGGGTTAGGACTAACTTGGCAC 59.961 50.000 18.55 4.41 43.58 5.01
2152 2282 2.039348 GGGTTAGGACTAACTTGGCACA 59.961 50.000 18.55 0.00 43.58 4.57
2154 2284 3.244457 GGTTAGGACTAACTTGGCACACT 60.244 47.826 18.55 0.00 43.58 3.55
2182 2318 0.394216 CCCAGATGACGAAATGGGCA 60.394 55.000 0.00 0.00 45.62 5.36
2296 2432 1.450025 TCGAGCTCTTCTTCTACGCA 58.550 50.000 12.85 0.00 0.00 5.24
2358 2494 1.056660 ATGGGAGTCACCGTGTTCTT 58.943 50.000 0.00 0.00 40.11 2.52
2359 2495 0.105964 TGGGAGTCACCGTGTTCTTG 59.894 55.000 0.00 0.00 40.11 3.02
2495 2631 1.028905 CAACTTCGACAAAAGCCCCA 58.971 50.000 0.00 0.00 0.00 4.96
2544 2680 0.319297 GGTTACGAGGCAACGACAGT 60.319 55.000 10.66 0.00 46.39 3.55
2565 2708 4.941263 AGTAACTGACAACTTTGTTGCAGA 59.059 37.500 25.65 12.57 42.43 4.26
2567 2710 4.558538 ACTGACAACTTTGTTGCAGATC 57.441 40.909 25.65 13.08 42.43 2.75
2573 2716 3.498774 ACTTTGTTGCAGATCTGAGGT 57.501 42.857 27.04 8.53 0.00 3.85
2704 2847 1.066858 GTCATCAAGAACAGAGGCGGA 60.067 52.381 0.00 0.00 0.00 5.54
2821 2964 1.002134 CACGTCCTTCTTGGGCCAT 60.002 57.895 7.26 0.00 37.05 4.40
2903 3046 4.693532 TGGTTTACCAGAGCAGCG 57.306 55.556 0.00 0.00 42.01 5.18
2922 3065 3.723348 GGCAGAAACGGCGTCCAC 61.723 66.667 15.17 8.02 0.00 4.02
2956 3099 1.170290 TCGTCTGCGTCTTCAGGACA 61.170 55.000 0.00 0.00 44.70 4.02
3452 3595 1.069090 GTGTCGTTGCTCCACTGGA 59.931 57.895 0.00 0.00 0.00 3.86
3526 3669 1.378882 CGCAGGCTACCAATGTGCAT 61.379 55.000 0.00 0.00 33.59 3.96
3587 3731 4.146961 GTGCACATTTCATTTTCAGACGTG 59.853 41.667 13.17 0.00 0.00 4.49
3588 3732 3.120121 GCACATTTCATTTTCAGACGTGC 59.880 43.478 0.00 0.00 40.21 5.34
3627 3771 2.555757 GCTCTGCCAAGTTGTGAGAAAT 59.444 45.455 16.77 0.00 0.00 2.17
3651 3795 2.228582 TGGTCGAATTGAATTGTGCAGG 59.771 45.455 0.00 0.00 0.00 4.85
3845 3989 4.900684 AGAGGCTTTGGTTCTACTTTCTC 58.099 43.478 0.00 0.00 0.00 2.87
3860 4098 5.232610 ACTTTCTCCTAGTTCGTACATCG 57.767 43.478 0.00 0.00 41.41 3.84
3977 4320 2.151202 TCGAAACATGCTTTCACCCTC 58.849 47.619 16.01 0.00 0.00 4.30
3991 4334 8.113462 TGCTTTCACCCTCCTTTAAGTTAATAT 58.887 33.333 0.00 0.00 0.00 1.28
3992 4335 9.623000 GCTTTCACCCTCCTTTAAGTTAATATA 57.377 33.333 0.00 0.00 0.00 0.86
4077 6082 0.830444 ACCGGCGGCTAGGAATCATA 60.830 55.000 28.71 0.00 0.00 2.15
4081 6086 1.402984 GGCGGCTAGGAATCATACGAG 60.403 57.143 0.00 0.00 0.00 4.18
4113 6118 0.392461 AATTTAAGCCGCCTCGCAGA 60.392 50.000 0.00 0.00 0.00 4.26
4114 6119 0.179045 ATTTAAGCCGCCTCGCAGAT 60.179 50.000 0.00 0.00 33.89 2.90
4116 6121 0.462375 TTAAGCCGCCTCGCAGATTA 59.538 50.000 0.00 0.00 33.89 1.75
4128 6133 1.137086 CGCAGATTATAGGATCCCCGG 59.863 57.143 8.55 0.00 37.58 5.73
4209 6221 1.416401 AGAGTCATCACAACACCCGTT 59.584 47.619 0.00 0.00 35.01 4.44
4211 6223 1.140052 AGTCATCACAACACCCGTTCA 59.860 47.619 0.00 0.00 31.13 3.18
4213 6225 2.095768 GTCATCACAACACCCGTTCATG 60.096 50.000 0.00 0.00 31.13 3.07
4261 6273 0.553819 ACAACAACTACCCCAGCCAA 59.446 50.000 0.00 0.00 0.00 4.52
4284 6296 2.338620 CAGTGCCCTGTTCGTCGA 59.661 61.111 0.00 0.00 33.80 4.20
4287 6299 1.300697 GTGCCCTGTTCGTCGAAGT 60.301 57.895 8.18 0.00 0.00 3.01
4307 6319 1.302033 CCGGTTGCAACAGCTCTCT 60.302 57.895 29.55 0.00 0.00 3.10
4319 6331 1.001293 CAGCTCTCTGTTGTAGCACCA 59.999 52.381 0.00 0.00 38.75 4.17
4357 6369 2.225791 ATTGTAGCTCCGTCGCAGCA 62.226 55.000 11.42 0.00 39.56 4.41
4383 6395 1.451504 CCCTGGCGATGCTCCATTA 59.548 57.895 0.00 0.00 32.37 1.90
4389 6401 1.331756 GGCGATGCTCCATTACAACTG 59.668 52.381 0.00 0.00 0.00 3.16
4405 6452 3.684113 TGCATCGCAGCACCAAAT 58.316 50.000 0.00 0.00 40.11 2.32
4427 6474 3.055963 TGTGATGTTGCAAATCCCCATTC 60.056 43.478 0.00 0.00 0.00 2.67
4428 6475 3.055963 GTGATGTTGCAAATCCCCATTCA 60.056 43.478 0.00 0.00 0.00 2.57
4435 6495 1.745087 CAAATCCCCATTCACTCCACG 59.255 52.381 0.00 0.00 0.00 4.94
4437 6497 2.270874 ATCCCCATTCACTCCACGGC 62.271 60.000 0.00 0.00 0.00 5.68
4444 6504 0.669318 TTCACTCCACGGCGATGTTC 60.669 55.000 16.62 0.00 0.00 3.18
4446 6506 2.264480 CTCCACGGCGATGTTCCA 59.736 61.111 16.62 0.00 0.00 3.53
4452 6512 2.589492 CGGCGATGTTCCAGCGATC 61.589 63.158 0.00 0.00 46.56 3.69
4458 6518 2.605823 CGATGTTCCAGCGATCCTCTAC 60.606 54.545 0.00 0.00 46.56 2.59
4461 6521 0.747255 TTCCAGCGATCCTCTACTGC 59.253 55.000 0.00 0.00 0.00 4.40
4502 6562 2.158959 CGGCTCGACGATGTTCCAC 61.159 63.158 0.00 0.00 35.47 4.02
4530 6590 1.343789 CAGATGATGATCCCGACAGCT 59.656 52.381 0.00 0.00 0.00 4.24
4546 6606 1.144716 GCTCGGTGATGCTCCATCA 59.855 57.895 3.91 3.91 46.84 3.07
4593 6653 2.202623 GGCAGTAGCGGTGACTCG 60.203 66.667 0.00 0.00 43.41 4.18
4604 6664 1.289066 GTGACTCGCTGTGGTGCTA 59.711 57.895 0.00 0.00 0.00 3.49
4631 6691 2.477176 TTGCGGTCACAACAGTGGC 61.477 57.895 0.00 0.00 37.15 5.01
4636 6696 0.668535 GGTCACAACAGTGGCTTTCC 59.331 55.000 0.00 0.00 37.97 3.13
4654 6716 0.984230 CCTCCCCTCAAAGCACTGTA 59.016 55.000 0.00 0.00 0.00 2.74
4659 6721 1.614051 CCCTCAAAGCACTGTATGGCA 60.614 52.381 0.00 0.00 0.00 4.92
4681 6743 0.461516 ATGCAGCGATGGTGTCTGAG 60.462 55.000 1.46 0.00 33.19 3.35
4683 6745 1.153489 CAGCGATGGTGTCTGAGGG 60.153 63.158 0.00 0.00 0.00 4.30
4721 6783 3.407967 GGGAATGGTGGCGGAGGA 61.408 66.667 0.00 0.00 0.00 3.71
4748 6810 1.745489 GCAGGTTTAGGCAGGACGG 60.745 63.158 0.00 0.00 0.00 4.79
4751 6813 1.745489 GGTTTAGGCAGGACGGCAG 60.745 63.158 0.00 0.00 44.47 4.85
4760 6822 2.436824 GGACGGCAGGAAGGAAGC 60.437 66.667 0.00 0.00 0.00 3.86
4765 6827 1.376466 GGCAGGAAGGAAGCTGTCA 59.624 57.895 0.00 0.00 0.00 3.58
4766 6828 0.034670 GGCAGGAAGGAAGCTGTCAT 60.035 55.000 0.00 0.00 0.00 3.06
4781 6843 1.833630 TGTCATAGTGGAAGGGAGCTG 59.166 52.381 0.00 0.00 0.00 4.24
4782 6844 1.834263 GTCATAGTGGAAGGGAGCTGT 59.166 52.381 0.00 0.00 0.00 4.40
4784 6846 3.451178 GTCATAGTGGAAGGGAGCTGTTA 59.549 47.826 0.00 0.00 0.00 2.41
4785 6847 3.706594 TCATAGTGGAAGGGAGCTGTTAG 59.293 47.826 0.00 0.00 0.00 2.34
4787 6849 0.324943 GTGGAAGGGAGCTGTTAGCA 59.675 55.000 0.00 0.00 45.56 3.49
4791 6853 2.290323 GGAAGGGAGCTGTTAGCAAGAA 60.290 50.000 0.00 0.00 45.56 2.52
4798 6860 4.333926 GGAGCTGTTAGCAAGAACCATTAG 59.666 45.833 0.00 0.00 45.56 1.73
4800 6862 4.010349 GCTGTTAGCAAGAACCATTAGGT 58.990 43.478 0.00 0.00 46.15 3.08
4822 6884 2.317609 CCGAACTGGTGAACGCCTG 61.318 63.158 9.17 9.17 0.00 4.85
4844 6906 1.686115 GGGGATGGAAGAACATGTGGG 60.686 57.143 0.00 0.00 0.00 4.61
4847 6909 2.555227 GGATGGAAGAACATGTGGGTGT 60.555 50.000 0.00 0.00 0.00 4.16
4852 6914 1.999648 AGAACATGTGGGTGTGCATT 58.000 45.000 0.00 0.00 29.48 3.56
4854 6916 0.033781 AACATGTGGGTGTGCATTGC 59.966 50.000 0.00 0.46 31.49 3.56
4873 6935 4.443857 GCATGCCTGCGTGAGATA 57.556 55.556 15.23 0.00 38.92 1.98
4879 6941 1.592669 CCTGCGTGAGATAAGGCCG 60.593 63.158 0.00 0.00 0.00 6.13
4895 6957 0.535102 GCCGGAGAGAGAGAGAGAGG 60.535 65.000 5.05 0.00 0.00 3.69
4905 6967 3.051803 AGAGAGAGAGAGGGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
4911 6973 3.041946 GAGAGGGAGAGAGAGAGAGAGT 58.958 54.545 0.00 0.00 0.00 3.24
4912 6974 4.078571 AGAGAGGGAGAGAGAGAGAGAGTA 60.079 50.000 0.00 0.00 0.00 2.59
4913 6975 4.631234 AGAGGGAGAGAGAGAGAGAGTAA 58.369 47.826 0.00 0.00 0.00 2.24
4914 6976 4.409247 AGAGGGAGAGAGAGAGAGAGTAAC 59.591 50.000 0.00 0.00 0.00 2.50
4915 6977 3.134081 AGGGAGAGAGAGAGAGAGTAACG 59.866 52.174 0.00 0.00 0.00 3.18
4916 6978 2.870411 GGAGAGAGAGAGAGAGTAACGC 59.130 54.545 0.00 0.00 0.00 4.84
4917 6979 2.870411 GAGAGAGAGAGAGAGTAACGCC 59.130 54.545 0.00 0.00 0.00 5.68
4918 6980 1.944709 GAGAGAGAGAGAGTAACGCCC 59.055 57.143 0.00 0.00 0.00 6.13
4919 6981 1.026584 GAGAGAGAGAGTAACGCCCC 58.973 60.000 0.00 0.00 0.00 5.80
4920 6982 0.748729 AGAGAGAGAGTAACGCCCCG 60.749 60.000 0.00 0.00 0.00 5.73
4921 6983 0.747283 GAGAGAGAGTAACGCCCCGA 60.747 60.000 0.00 0.00 0.00 5.14
4922 6984 0.748729 AGAGAGAGTAACGCCCCGAG 60.749 60.000 0.00 0.00 0.00 4.63
4923 6985 2.104530 GAGAGTAACGCCCCGAGC 59.895 66.667 0.00 0.00 38.52 5.03
4924 6986 3.427598 GAGAGTAACGCCCCGAGCC 62.428 68.421 0.00 0.00 38.78 4.70
4925 6987 4.525949 GAGTAACGCCCCGAGCCC 62.526 72.222 0.00 0.00 38.78 5.19
4942 7004 4.394712 CGGCGCCCCAGAAGACTT 62.395 66.667 23.46 0.00 0.00 3.01
4943 7005 2.436824 GGCGCCCCAGAAGACTTC 60.437 66.667 18.11 7.14 0.00 3.01
4944 7006 2.436824 GCGCCCCAGAAGACTTCC 60.437 66.667 11.67 0.00 0.00 3.46
4945 7007 3.068881 CGCCCCAGAAGACTTCCA 58.931 61.111 11.67 0.00 0.00 3.53
4946 7008 1.078848 CGCCCCAGAAGACTTCCAG 60.079 63.158 11.67 5.06 0.00 3.86
4947 7009 1.377856 GCCCCAGAAGACTTCCAGC 60.378 63.158 11.67 6.15 0.00 4.85
4948 7010 1.846712 GCCCCAGAAGACTTCCAGCT 61.847 60.000 11.67 0.00 0.00 4.24
4949 7011 1.573108 CCCCAGAAGACTTCCAGCTA 58.427 55.000 11.67 0.00 0.00 3.32
4950 7012 2.122768 CCCCAGAAGACTTCCAGCTAT 58.877 52.381 11.67 0.00 0.00 2.97
4951 7013 2.507471 CCCCAGAAGACTTCCAGCTATT 59.493 50.000 11.67 0.00 0.00 1.73
4952 7014 3.432890 CCCCAGAAGACTTCCAGCTATTC 60.433 52.174 11.67 0.00 0.00 1.75
4953 7015 3.432890 CCCAGAAGACTTCCAGCTATTCC 60.433 52.174 11.67 0.00 0.00 3.01
4954 7016 3.452474 CAGAAGACTTCCAGCTATTCCG 58.548 50.000 11.67 0.00 0.00 4.30
4955 7017 3.131223 CAGAAGACTTCCAGCTATTCCGA 59.869 47.826 11.67 0.00 0.00 4.55
4956 7018 3.383185 AGAAGACTTCCAGCTATTCCGAG 59.617 47.826 11.67 0.00 0.00 4.63
4957 7019 2.741145 AGACTTCCAGCTATTCCGAGT 58.259 47.619 0.00 0.00 0.00 4.18
4958 7020 3.100671 AGACTTCCAGCTATTCCGAGTT 58.899 45.455 0.00 0.00 0.00 3.01
4959 7021 3.515901 AGACTTCCAGCTATTCCGAGTTT 59.484 43.478 0.00 0.00 0.00 2.66
4960 7022 3.863041 ACTTCCAGCTATTCCGAGTTTC 58.137 45.455 0.00 0.00 0.00 2.78
4961 7023 2.579207 TCCAGCTATTCCGAGTTTCG 57.421 50.000 0.00 0.00 40.07 3.46
4962 7024 0.931005 CCAGCTATTCCGAGTTTCGC 59.069 55.000 0.00 0.00 38.82 4.70
4963 7025 0.931005 CAGCTATTCCGAGTTTCGCC 59.069 55.000 0.00 0.00 38.82 5.54
4964 7026 0.527817 AGCTATTCCGAGTTTCGCCG 60.528 55.000 0.00 0.00 38.82 6.46
4965 7027 0.804933 GCTATTCCGAGTTTCGCCGT 60.805 55.000 0.00 0.00 38.82 5.68
4966 7028 0.921347 CTATTCCGAGTTTCGCCGTG 59.079 55.000 0.00 0.00 38.82 4.94
4967 7029 0.244450 TATTCCGAGTTTCGCCGTGT 59.756 50.000 0.00 0.00 38.82 4.49
4968 7030 1.289109 ATTCCGAGTTTCGCCGTGTG 61.289 55.000 0.00 0.00 38.82 3.82
4969 7031 2.632136 TTCCGAGTTTCGCCGTGTGT 62.632 55.000 0.00 0.00 38.82 3.72
4970 7032 2.241880 CCGAGTTTCGCCGTGTGTT 61.242 57.895 0.00 0.00 38.82 3.32
4971 7033 1.639534 CGAGTTTCGCCGTGTGTTT 59.360 52.632 0.00 0.00 31.14 2.83
4972 7034 0.027063 CGAGTTTCGCCGTGTGTTTT 59.973 50.000 0.00 0.00 31.14 2.43
4973 7035 1.258458 CGAGTTTCGCCGTGTGTTTTA 59.742 47.619 0.00 0.00 31.14 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.616159 GCTTGGCACCCTTTCTGTAA 58.384 50.000 0.00 0.00 0.00 2.41
1 2 0.605319 CGCTTGGCACCCTTTCTGTA 60.605 55.000 0.00 0.00 0.00 2.74
2 3 1.898574 CGCTTGGCACCCTTTCTGT 60.899 57.895 0.00 0.00 0.00 3.41
3 4 2.956987 CGCTTGGCACCCTTTCTG 59.043 61.111 0.00 0.00 0.00 3.02
4 5 2.985847 GCGCTTGGCACCCTTTCT 60.986 61.111 0.00 0.00 42.87 2.52
5 6 4.404654 CGCGCTTGGCACCCTTTC 62.405 66.667 5.56 0.00 43.84 2.62
11 12 4.999939 CAAACCCGCGCTTGGCAC 63.000 66.667 5.56 0.00 43.84 5.01
13 14 4.700365 GTCAAACCCGCGCTTGGC 62.700 66.667 5.56 0.00 38.69 4.52
14 15 3.283684 TGTCAAACCCGCGCTTGG 61.284 61.111 5.56 8.75 0.00 3.61
15 16 2.051345 GTGTCAAACCCGCGCTTG 60.051 61.111 5.56 2.86 0.00 4.01
16 17 3.645975 CGTGTCAAACCCGCGCTT 61.646 61.111 5.56 0.00 0.00 4.68
19 20 4.007940 CACCGTGTCAAACCCGCG 62.008 66.667 0.00 0.00 35.69 6.46
20 21 3.656045 CCACCGTGTCAAACCCGC 61.656 66.667 0.00 0.00 0.00 6.13
21 22 2.203098 ACCACCGTGTCAAACCCG 60.203 61.111 0.00 0.00 0.00 5.28
22 23 1.153127 TGACCACCGTGTCAAACCC 60.153 57.895 0.00 0.00 42.06 4.11
23 24 4.544001 TGACCACCGTGTCAAACC 57.456 55.556 0.00 0.00 42.06 3.27
28 29 0.801067 GTAGCGATGACCACCGTGTC 60.801 60.000 0.00 0.00 35.77 3.67
29 30 1.214589 GTAGCGATGACCACCGTGT 59.785 57.895 0.00 0.00 0.00 4.49
30 31 1.518572 GGTAGCGATGACCACCGTG 60.519 63.158 0.00 0.00 36.91 4.94
31 32 1.980232 TGGTAGCGATGACCACCGT 60.980 57.895 0.00 0.00 42.15 4.83
32 33 2.889617 TGGTAGCGATGACCACCG 59.110 61.111 0.00 0.00 42.15 4.94
35 36 1.613317 CCAGGTGGTAGCGATGACCA 61.613 60.000 2.43 0.00 44.86 4.02
36 37 1.144057 CCAGGTGGTAGCGATGACC 59.856 63.158 0.00 0.00 37.49 4.02
37 38 1.144057 CCCAGGTGGTAGCGATGAC 59.856 63.158 0.00 0.00 0.00 3.06
38 39 2.731571 GCCCAGGTGGTAGCGATGA 61.732 63.158 0.00 0.00 36.04 2.92
39 40 2.203070 GCCCAGGTGGTAGCGATG 60.203 66.667 0.00 0.00 36.04 3.84
40 41 3.480133 GGCCCAGGTGGTAGCGAT 61.480 66.667 0.00 0.00 36.04 4.58
41 42 2.808761 TAAGGCCCAGGTGGTAGCGA 62.809 60.000 0.00 0.00 36.04 4.93
42 43 1.696097 ATAAGGCCCAGGTGGTAGCG 61.696 60.000 0.00 0.00 36.04 4.26
43 44 0.179018 CATAAGGCCCAGGTGGTAGC 60.179 60.000 0.00 0.00 36.04 3.58
44 45 0.474184 CCATAAGGCCCAGGTGGTAG 59.526 60.000 0.00 0.00 36.04 3.18
45 46 0.045008 TCCATAAGGCCCAGGTGGTA 59.955 55.000 0.00 0.00 36.04 3.25
46 47 0.849094 TTCCATAAGGCCCAGGTGGT 60.849 55.000 0.00 0.00 36.04 4.16
47 48 0.334676 TTTCCATAAGGCCCAGGTGG 59.665 55.000 0.00 3.07 33.74 4.61
48 49 1.272425 TGTTTCCATAAGGCCCAGGTG 60.272 52.381 0.00 0.00 33.74 4.00
49 50 1.005924 CTGTTTCCATAAGGCCCAGGT 59.994 52.381 0.00 0.00 33.74 4.00
50 51 1.767759 CTGTTTCCATAAGGCCCAGG 58.232 55.000 0.00 0.00 33.74 4.45
51 52 1.106285 GCTGTTTCCATAAGGCCCAG 58.894 55.000 0.00 0.00 33.74 4.45
52 53 0.679640 CGCTGTTTCCATAAGGCCCA 60.680 55.000 0.00 0.00 33.74 5.36
53 54 1.384222 CCGCTGTTTCCATAAGGCCC 61.384 60.000 0.00 0.00 33.74 5.80
54 55 0.393808 TCCGCTGTTTCCATAAGGCC 60.394 55.000 0.00 0.00 33.74 5.19
55 56 1.459450 TTCCGCTGTTTCCATAAGGC 58.541 50.000 0.00 0.00 33.74 4.35
56 57 2.223572 GCATTCCGCTGTTTCCATAAGG 60.224 50.000 0.00 0.00 37.77 2.69
57 58 2.223572 GGCATTCCGCTGTTTCCATAAG 60.224 50.000 0.00 0.00 41.91 1.73
58 59 1.748493 GGCATTCCGCTGTTTCCATAA 59.252 47.619 0.00 0.00 41.91 1.90
59 60 1.340502 TGGCATTCCGCTGTTTCCATA 60.341 47.619 0.00 0.00 41.91 2.74
60 61 0.611618 TGGCATTCCGCTGTTTCCAT 60.612 50.000 0.00 0.00 41.91 3.41
61 62 1.228398 TGGCATTCCGCTGTTTCCA 60.228 52.632 0.00 0.00 41.91 3.53
62 63 0.960364 TCTGGCATTCCGCTGTTTCC 60.960 55.000 0.00 0.00 41.91 3.13
63 64 0.449388 CTCTGGCATTCCGCTGTTTC 59.551 55.000 0.00 0.00 41.91 2.78
64 65 0.250901 ACTCTGGCATTCCGCTGTTT 60.251 50.000 0.00 0.00 41.91 2.83
65 66 0.957395 CACTCTGGCATTCCGCTGTT 60.957 55.000 0.00 0.00 41.91 3.16
66 67 1.376424 CACTCTGGCATTCCGCTGT 60.376 57.895 0.00 0.00 41.91 4.40
67 68 0.957395 AACACTCTGGCATTCCGCTG 60.957 55.000 0.00 0.00 41.91 5.18
68 69 0.674895 GAACACTCTGGCATTCCGCT 60.675 55.000 0.00 0.00 41.91 5.52
69 70 1.648467 GGAACACTCTGGCATTCCGC 61.648 60.000 1.34 0.00 41.28 5.54
70 71 0.321564 TGGAACACTCTGGCATTCCG 60.322 55.000 11.15 0.00 43.05 4.30
71 72 3.650647 TGGAACACTCTGGCATTCC 57.349 52.632 9.39 9.39 40.94 3.01
84 85 6.599244 TCATCTGTTGATTAATCCTGTGGAAC 59.401 38.462 12.90 9.49 34.34 3.62
85 86 6.599244 GTCATCTGTTGATTAATCCTGTGGAA 59.401 38.462 12.90 0.00 36.54 3.53
86 87 6.115446 GTCATCTGTTGATTAATCCTGTGGA 58.885 40.000 12.90 5.57 36.54 4.02
87 88 5.007039 CGTCATCTGTTGATTAATCCTGTGG 59.993 44.000 12.90 0.56 36.54 4.17
88 89 5.007039 CCGTCATCTGTTGATTAATCCTGTG 59.993 44.000 12.90 4.09 36.54 3.66
89 90 5.118990 CCGTCATCTGTTGATTAATCCTGT 58.881 41.667 12.90 0.00 36.54 4.00
90 91 4.024556 GCCGTCATCTGTTGATTAATCCTG 60.025 45.833 12.90 3.15 36.54 3.86
91 92 4.130118 GCCGTCATCTGTTGATTAATCCT 58.870 43.478 12.90 0.00 36.54 3.24
92 93 3.059597 CGCCGTCATCTGTTGATTAATCC 60.060 47.826 12.90 0.00 36.54 3.01
93 94 3.604772 GCGCCGTCATCTGTTGATTAATC 60.605 47.826 8.60 8.60 36.54 1.75
94 95 2.287915 GCGCCGTCATCTGTTGATTAAT 59.712 45.455 0.00 0.00 36.54 1.40
95 96 1.663643 GCGCCGTCATCTGTTGATTAA 59.336 47.619 0.00 0.00 36.54 1.40
96 97 1.286501 GCGCCGTCATCTGTTGATTA 58.713 50.000 0.00 0.00 36.54 1.75
97 98 1.369091 GGCGCCGTCATCTGTTGATT 61.369 55.000 12.58 0.00 36.54 2.57
98 99 1.815421 GGCGCCGTCATCTGTTGAT 60.815 57.895 12.58 0.00 36.54 2.57
99 100 2.434185 GGCGCCGTCATCTGTTGA 60.434 61.111 12.58 0.00 0.00 3.18
100 101 3.853330 CGGCGCCGTCATCTGTTG 61.853 66.667 39.71 8.63 34.35 3.33
101 102 3.583276 TTCGGCGCCGTCATCTGTT 62.583 57.895 44.16 0.00 40.74 3.16
102 103 4.063967 TTCGGCGCCGTCATCTGT 62.064 61.111 44.16 0.00 40.74 3.41
103 104 3.554692 GTTCGGCGCCGTCATCTG 61.555 66.667 44.16 18.80 40.74 2.90
104 105 4.814294 GGTTCGGCGCCGTCATCT 62.814 66.667 44.16 0.00 40.74 2.90
105 106 4.814294 AGGTTCGGCGCCGTCATC 62.814 66.667 44.16 32.18 40.74 2.92
126 127 4.240103 TCCGCGATGATGGCCAGG 62.240 66.667 13.05 4.87 0.00 4.45
127 128 2.664185 CTCCGCGATGATGGCCAG 60.664 66.667 13.05 0.00 0.00 4.85
128 129 4.916293 GCTCCGCGATGATGGCCA 62.916 66.667 8.56 8.56 0.00 5.36
129 130 4.615815 AGCTCCGCGATGATGGCC 62.616 66.667 8.23 0.00 0.00 5.36
130 131 3.040763 GAGCTCCGCGATGATGGC 61.041 66.667 8.23 2.07 0.00 4.40
131 132 0.811219 TTTGAGCTCCGCGATGATGG 60.811 55.000 8.23 0.00 0.00 3.51
132 133 0.580578 CTTTGAGCTCCGCGATGATG 59.419 55.000 8.23 0.00 0.00 3.07
133 134 0.461548 TCTTTGAGCTCCGCGATGAT 59.538 50.000 8.23 0.00 0.00 2.45
134 135 0.246360 TTCTTTGAGCTCCGCGATGA 59.754 50.000 8.23 0.00 0.00 2.92
135 136 1.004185 CATTCTTTGAGCTCCGCGATG 60.004 52.381 8.23 5.62 0.00 3.84
136 137 1.293924 CATTCTTTGAGCTCCGCGAT 58.706 50.000 8.23 0.00 0.00 4.58
137 138 0.740868 CCATTCTTTGAGCTCCGCGA 60.741 55.000 8.23 1.34 0.00 5.87
138 139 0.740868 TCCATTCTTTGAGCTCCGCG 60.741 55.000 12.15 0.00 0.00 6.46
139 140 1.012841 CTCCATTCTTTGAGCTCCGC 58.987 55.000 12.15 0.00 0.00 5.54
140 141 1.661341 CCTCCATTCTTTGAGCTCCG 58.339 55.000 12.15 0.00 0.00 4.63
141 142 1.064832 AGCCTCCATTCTTTGAGCTCC 60.065 52.381 12.15 0.00 0.00 4.70
142 143 2.416680 AGCCTCCATTCTTTGAGCTC 57.583 50.000 6.82 6.82 0.00 4.09
143 144 2.421248 GCTAGCCTCCATTCTTTGAGCT 60.421 50.000 2.29 0.00 32.82 4.09
144 145 1.946081 GCTAGCCTCCATTCTTTGAGC 59.054 52.381 2.29 0.00 0.00 4.26
145 146 2.570135 GGCTAGCCTCCATTCTTTGAG 58.430 52.381 27.17 0.00 0.00 3.02
146 147 1.134401 CGGCTAGCCTCCATTCTTTGA 60.134 52.381 30.55 0.00 0.00 2.69
147 148 1.303309 CGGCTAGCCTCCATTCTTTG 58.697 55.000 30.55 7.86 0.00 2.77
148 149 0.181350 CCGGCTAGCCTCCATTCTTT 59.819 55.000 30.55 0.00 0.00 2.52
149 150 0.983378 ACCGGCTAGCCTCCATTCTT 60.983 55.000 30.55 3.55 0.00 2.52
150 151 0.983378 AACCGGCTAGCCTCCATTCT 60.983 55.000 30.55 5.91 0.00 2.40
151 152 0.107165 AAACCGGCTAGCCTCCATTC 60.107 55.000 30.55 3.41 0.00 2.67
152 153 0.394352 CAAACCGGCTAGCCTCCATT 60.394 55.000 30.55 16.91 0.00 3.16
153 154 1.224592 CAAACCGGCTAGCCTCCAT 59.775 57.895 30.55 12.27 0.00 3.41
154 155 2.668632 CAAACCGGCTAGCCTCCA 59.331 61.111 30.55 0.00 0.00 3.86
155 156 2.124695 CCAAACCGGCTAGCCTCC 60.125 66.667 30.55 5.76 0.00 4.30
156 157 2.124695 CCCAAACCGGCTAGCCTC 60.125 66.667 30.55 6.55 0.00 4.70
157 158 2.609610 TCCCAAACCGGCTAGCCT 60.610 61.111 30.55 11.23 0.00 4.58
158 159 2.124695 CTCCCAAACCGGCTAGCC 60.125 66.667 24.75 24.75 0.00 3.93
159 160 2.124695 CCTCCCAAACCGGCTAGC 60.125 66.667 6.04 6.04 0.00 3.42
160 161 1.522569 CTCCTCCCAAACCGGCTAG 59.477 63.158 0.00 0.00 0.00 3.42
161 162 1.993391 CCTCCTCCCAAACCGGCTA 60.993 63.158 0.00 0.00 0.00 3.93
162 163 3.330720 CCTCCTCCCAAACCGGCT 61.331 66.667 0.00 0.00 0.00 5.52
163 164 3.327404 TCCTCCTCCCAAACCGGC 61.327 66.667 0.00 0.00 0.00 6.13
164 165 2.670148 CCTCCTCCTCCCAAACCGG 61.670 68.421 0.00 0.00 0.00 5.28
165 166 2.990479 CCTCCTCCTCCCAAACCG 59.010 66.667 0.00 0.00 0.00 4.44
166 167 1.501654 AAGCCTCCTCCTCCCAAACC 61.502 60.000 0.00 0.00 0.00 3.27
167 168 0.405973 AAAGCCTCCTCCTCCCAAAC 59.594 55.000 0.00 0.00 0.00 2.93
168 169 0.405585 CAAAGCCTCCTCCTCCCAAA 59.594 55.000 0.00 0.00 0.00 3.28
169 170 1.500783 CCAAAGCCTCCTCCTCCCAA 61.501 60.000 0.00 0.00 0.00 4.12
170 171 1.925455 CCAAAGCCTCCTCCTCCCA 60.925 63.158 0.00 0.00 0.00 4.37
171 172 3.002371 CCAAAGCCTCCTCCTCCC 58.998 66.667 0.00 0.00 0.00 4.30
172 173 2.273776 GCCAAAGCCTCCTCCTCC 59.726 66.667 0.00 0.00 0.00 4.30
173 174 1.377856 GTGCCAAAGCCTCCTCCTC 60.378 63.158 0.00 0.00 38.69 3.71
174 175 1.504275 ATGTGCCAAAGCCTCCTCCT 61.504 55.000 0.00 0.00 38.69 3.69
175 176 0.613012 AATGTGCCAAAGCCTCCTCC 60.613 55.000 0.00 0.00 38.69 4.30
176 177 1.260544 AAATGTGCCAAAGCCTCCTC 58.739 50.000 0.00 0.00 38.69 3.71
177 178 1.345415 CAAAATGTGCCAAAGCCTCCT 59.655 47.619 0.00 0.00 38.69 3.69
178 179 1.070601 ACAAAATGTGCCAAAGCCTCC 59.929 47.619 0.00 0.00 38.69 4.30
179 180 2.137523 CACAAAATGTGCCAAAGCCTC 58.862 47.619 0.00 0.00 41.89 4.70
180 181 2.243602 CACAAAATGTGCCAAAGCCT 57.756 45.000 0.00 0.00 41.89 4.58
190 191 3.023119 TGCCAACACTCTCACAAAATGT 58.977 40.909 0.00 0.00 0.00 2.71
191 192 3.713858 TGCCAACACTCTCACAAAATG 57.286 42.857 0.00 0.00 0.00 2.32
192 193 4.460382 CCTATGCCAACACTCTCACAAAAT 59.540 41.667 0.00 0.00 0.00 1.82
193 194 3.820467 CCTATGCCAACACTCTCACAAAA 59.180 43.478 0.00 0.00 0.00 2.44
194 195 3.072330 TCCTATGCCAACACTCTCACAAA 59.928 43.478 0.00 0.00 0.00 2.83
195 196 2.637382 TCCTATGCCAACACTCTCACAA 59.363 45.455 0.00 0.00 0.00 3.33
196 197 2.256306 TCCTATGCCAACACTCTCACA 58.744 47.619 0.00 0.00 0.00 3.58
197 198 3.550437 ATCCTATGCCAACACTCTCAC 57.450 47.619 0.00 0.00 0.00 3.51
198 199 4.716784 AGTTATCCTATGCCAACACTCTCA 59.283 41.667 0.00 0.00 0.00 3.27
199 200 5.053145 CAGTTATCCTATGCCAACACTCTC 58.947 45.833 0.00 0.00 0.00 3.20
200 201 4.471386 ACAGTTATCCTATGCCAACACTCT 59.529 41.667 0.00 0.00 0.00 3.24
201 202 4.770795 ACAGTTATCCTATGCCAACACTC 58.229 43.478 0.00 0.00 0.00 3.51
202 203 4.844349 ACAGTTATCCTATGCCAACACT 57.156 40.909 0.00 0.00 0.00 3.55
203 204 5.057149 CCTACAGTTATCCTATGCCAACAC 58.943 45.833 0.00 0.00 0.00 3.32
204 205 4.102524 CCCTACAGTTATCCTATGCCAACA 59.897 45.833 0.00 0.00 0.00 3.33
205 206 4.102681 ACCCTACAGTTATCCTATGCCAAC 59.897 45.833 0.00 0.00 0.00 3.77
206 207 4.102524 CACCCTACAGTTATCCTATGCCAA 59.897 45.833 0.00 0.00 0.00 4.52
207 208 3.646162 CACCCTACAGTTATCCTATGCCA 59.354 47.826 0.00 0.00 0.00 4.92
208 209 3.646637 ACACCCTACAGTTATCCTATGCC 59.353 47.826 0.00 0.00 0.00 4.40
209 210 4.957684 ACACCCTACAGTTATCCTATGC 57.042 45.455 0.00 0.00 0.00 3.14
210 211 5.057149 GCAACACCCTACAGTTATCCTATG 58.943 45.833 0.00 0.00 0.00 2.23
211 212 4.969359 AGCAACACCCTACAGTTATCCTAT 59.031 41.667 0.00 0.00 0.00 2.57
212 213 4.359105 AGCAACACCCTACAGTTATCCTA 58.641 43.478 0.00 0.00 0.00 2.94
213 214 3.182152 AGCAACACCCTACAGTTATCCT 58.818 45.455 0.00 0.00 0.00 3.24
214 215 3.629142 AGCAACACCCTACAGTTATCC 57.371 47.619 0.00 0.00 0.00 2.59
215 216 5.593010 CTCTAGCAACACCCTACAGTTATC 58.407 45.833 0.00 0.00 0.00 1.75
216 217 4.141914 GCTCTAGCAACACCCTACAGTTAT 60.142 45.833 0.00 0.00 41.59 1.89
217 218 3.194968 GCTCTAGCAACACCCTACAGTTA 59.805 47.826 0.00 0.00 41.59 2.24
218 219 2.028020 GCTCTAGCAACACCCTACAGTT 60.028 50.000 0.00 0.00 41.59 3.16
219 220 1.550976 GCTCTAGCAACACCCTACAGT 59.449 52.381 0.00 0.00 41.59 3.55
220 221 1.827969 AGCTCTAGCAACACCCTACAG 59.172 52.381 4.54 0.00 45.16 2.74
221 222 1.938585 AGCTCTAGCAACACCCTACA 58.061 50.000 4.54 0.00 45.16 2.74
222 223 2.362717 CCTAGCTCTAGCAACACCCTAC 59.637 54.545 4.54 0.00 45.16 3.18
223 224 2.667470 CCTAGCTCTAGCAACACCCTA 58.333 52.381 4.54 0.00 45.16 3.53
224 225 1.490574 CCTAGCTCTAGCAACACCCT 58.509 55.000 4.54 0.00 45.16 4.34
225 226 0.466124 CCCTAGCTCTAGCAACACCC 59.534 60.000 4.54 0.00 45.16 4.61
226 227 1.134670 CACCCTAGCTCTAGCAACACC 60.135 57.143 4.54 0.00 45.16 4.16
227 228 1.550976 ACACCCTAGCTCTAGCAACAC 59.449 52.381 4.54 0.00 45.16 3.32
228 229 1.550524 CACACCCTAGCTCTAGCAACA 59.449 52.381 4.54 0.00 45.16 3.33
229 230 1.740718 GCACACCCTAGCTCTAGCAAC 60.741 57.143 4.54 0.00 45.16 4.17
230 231 0.537188 GCACACCCTAGCTCTAGCAA 59.463 55.000 4.54 0.00 45.16 3.91
231 232 1.667154 CGCACACCCTAGCTCTAGCA 61.667 60.000 4.54 0.00 45.16 3.49
232 233 1.066587 CGCACACCCTAGCTCTAGC 59.933 63.158 0.00 0.00 42.49 3.42
233 234 0.382515 GACGCACACCCTAGCTCTAG 59.617 60.000 0.00 0.00 0.00 2.43
234 235 0.034380 AGACGCACACCCTAGCTCTA 60.034 55.000 0.00 0.00 0.00 2.43
235 236 0.034380 TAGACGCACACCCTAGCTCT 60.034 55.000 0.00 0.00 0.00 4.09
236 237 0.382515 CTAGACGCACACCCTAGCTC 59.617 60.000 0.00 0.00 0.00 4.09
237 238 0.034380 TCTAGACGCACACCCTAGCT 60.034 55.000 0.00 0.00 32.18 3.32
238 239 0.100861 GTCTAGACGCACACCCTAGC 59.899 60.000 7.22 0.00 32.18 3.42
249 250 4.976677 GAAGCGAGCTTCCGTCTAGACG 62.977 59.091 33.33 33.33 44.76 4.18
250 251 0.452585 AAGCGAGCTTCCGTCTAGAC 59.547 55.000 13.18 13.18 0.00 2.59
251 252 0.733729 GAAGCGAGCTTCCGTCTAGA 59.266 55.000 23.14 0.00 44.76 2.43
252 253 3.243855 GAAGCGAGCTTCCGTCTAG 57.756 57.895 23.14 0.00 44.76 2.43
260 261 1.002792 GTTTTGAACGGAAGCGAGCTT 60.003 47.619 10.40 10.40 39.23 3.74
261 262 0.586802 GTTTTGAACGGAAGCGAGCT 59.413 50.000 0.00 0.00 0.00 4.09
262 263 0.586802 AGTTTTGAACGGAAGCGAGC 59.413 50.000 0.00 0.00 36.23 5.03
263 264 3.002348 AGAAAGTTTTGAACGGAAGCGAG 59.998 43.478 0.00 0.00 36.23 5.03
264 265 2.940410 AGAAAGTTTTGAACGGAAGCGA 59.060 40.909 0.00 0.00 36.23 4.93
265 266 3.334272 AGAAAGTTTTGAACGGAAGCG 57.666 42.857 0.00 0.00 36.23 4.68
266 267 4.421058 ACAAGAAAGTTTTGAACGGAAGC 58.579 39.130 0.00 0.00 36.23 3.86
267 268 9.893305 AATATACAAGAAAGTTTTGAACGGAAG 57.107 29.630 0.00 0.00 36.23 3.46
268 269 9.672086 CAATATACAAGAAAGTTTTGAACGGAA 57.328 29.630 0.00 0.00 36.23 4.30
269 270 9.058174 TCAATATACAAGAAAGTTTTGAACGGA 57.942 29.630 0.00 0.00 36.23 4.69
270 271 9.840427 ATCAATATACAAGAAAGTTTTGAACGG 57.160 29.630 0.00 0.00 36.23 4.44
278 279 8.186821 GCAAGAGCATCAATATACAAGAAAGTT 58.813 33.333 0.00 0.00 41.58 2.66
279 280 7.555554 AGCAAGAGCATCAATATACAAGAAAGT 59.444 33.333 0.00 0.00 45.49 2.66
280 281 7.928103 AGCAAGAGCATCAATATACAAGAAAG 58.072 34.615 0.00 0.00 45.49 2.62
281 282 7.870509 AGCAAGAGCATCAATATACAAGAAA 57.129 32.000 0.00 0.00 45.49 2.52
282 283 7.870509 AAGCAAGAGCATCAATATACAAGAA 57.129 32.000 0.00 0.00 45.49 2.52
283 284 7.870509 AAAGCAAGAGCATCAATATACAAGA 57.129 32.000 0.00 0.00 45.49 3.02
284 285 8.404000 AGAAAAGCAAGAGCATCAATATACAAG 58.596 33.333 0.00 0.00 45.49 3.16
285 286 8.284945 AGAAAAGCAAGAGCATCAATATACAA 57.715 30.769 0.00 0.00 45.49 2.41
286 287 7.772292 AGAGAAAAGCAAGAGCATCAATATACA 59.228 33.333 0.00 0.00 45.49 2.29
287 288 8.152309 AGAGAAAAGCAAGAGCATCAATATAC 57.848 34.615 0.00 0.00 45.49 1.47
288 289 7.443575 GGAGAGAAAAGCAAGAGCATCAATATA 59.556 37.037 0.00 0.00 45.49 0.86
289 290 6.262720 GGAGAGAAAAGCAAGAGCATCAATAT 59.737 38.462 0.00 0.00 45.49 1.28
290 291 5.587844 GGAGAGAAAAGCAAGAGCATCAATA 59.412 40.000 0.00 0.00 45.49 1.90
291 292 4.398673 GGAGAGAAAAGCAAGAGCATCAAT 59.601 41.667 0.00 0.00 45.49 2.57
292 293 3.755378 GGAGAGAAAAGCAAGAGCATCAA 59.245 43.478 0.00 0.00 45.49 2.57
293 294 3.008813 AGGAGAGAAAAGCAAGAGCATCA 59.991 43.478 0.00 0.00 45.49 3.07
294 295 3.608796 AGGAGAGAAAAGCAAGAGCATC 58.391 45.455 0.00 0.00 45.49 3.91
295 296 3.717452 AGGAGAGAAAAGCAAGAGCAT 57.283 42.857 0.00 0.00 45.49 3.79
296 297 4.833478 ATAGGAGAGAAAAGCAAGAGCA 57.167 40.909 0.00 0.00 45.49 4.26
297 298 7.335673 ACTTTTATAGGAGAGAAAAGCAAGAGC 59.664 37.037 6.31 0.00 46.07 4.09
298 299 8.785329 ACTTTTATAGGAGAGAAAAGCAAGAG 57.215 34.615 6.31 0.00 46.07 2.85
301 302 9.449719 CCTTACTTTTATAGGAGAGAAAAGCAA 57.550 33.333 6.31 0.52 46.07 3.91
302 303 8.603304 ACCTTACTTTTATAGGAGAGAAAAGCA 58.397 33.333 6.31 0.00 46.07 3.91
306 307 8.193438 GCGTACCTTACTTTTATAGGAGAGAAA 58.807 37.037 0.00 0.00 33.21 2.52
307 308 7.201857 GGCGTACCTTACTTTTATAGGAGAGAA 60.202 40.741 0.00 0.00 33.21 2.87
308 309 6.264067 GGCGTACCTTACTTTTATAGGAGAGA 59.736 42.308 0.00 0.00 33.21 3.10
309 310 6.445475 GGCGTACCTTACTTTTATAGGAGAG 58.555 44.000 0.00 0.00 33.21 3.20
310 311 6.396829 GGCGTACCTTACTTTTATAGGAGA 57.603 41.667 0.00 0.00 33.21 3.71
331 332 1.519408 TTTGAGAGTACGCCAAAGGC 58.481 50.000 8.42 0.00 46.75 4.35
352 353 1.886542 AGCGAGCCCGAAAAGATTTTT 59.113 42.857 0.00 0.00 38.22 1.94
353 354 1.200020 CAGCGAGCCCGAAAAGATTTT 59.800 47.619 0.00 0.00 38.22 1.82
354 355 0.804989 CAGCGAGCCCGAAAAGATTT 59.195 50.000 0.00 0.00 38.22 2.17
355 356 0.321653 ACAGCGAGCCCGAAAAGATT 60.322 50.000 0.00 0.00 38.22 2.40
434 435 2.167693 TGGTATGTGTGACGGAATCTCC 59.832 50.000 0.00 0.00 0.00 3.71
482 483 1.134280 CCTATGAGGGGAAGTGCACTG 60.134 57.143 22.49 3.12 0.00 3.66
493 494 3.479203 TGTGGCCGCCTATGAGGG 61.479 66.667 15.15 0.00 35.37 4.30
521 522 2.125912 GATGTCTGCGGTGCGACT 60.126 61.111 12.39 2.48 34.86 4.18
522 523 1.756375 GATGATGTCTGCGGTGCGAC 61.756 60.000 0.00 6.77 34.56 5.19
529 530 2.094894 GGTCAACTTGATGATGTCTGCG 59.905 50.000 0.00 0.00 0.00 5.18
556 557 2.601868 GGTCCCCTCTCCGCTCTA 59.398 66.667 0.00 0.00 0.00 2.43
586 587 2.248431 GGTCAACTTGCGTCGTGC 59.752 61.111 0.00 0.00 46.70 5.34
605 606 1.227380 GAGTGGCACCATCGCTAGG 60.227 63.158 15.27 0.00 0.00 3.02
616 621 1.900245 TACTACTGTCACGAGTGGCA 58.100 50.000 10.26 10.26 43.73 4.92
656 661 7.171508 ACTGTCAACCATTTATCGTGCTATATG 59.828 37.037 0.00 0.00 0.00 1.78
753 762 4.227512 TCGCACGTATTTATCACCGTAT 57.772 40.909 0.00 0.00 31.42 3.06
754 763 3.689309 TCGCACGTATTTATCACCGTA 57.311 42.857 0.00 0.00 31.42 4.02
755 764 2.565210 TCGCACGTATTTATCACCGT 57.435 45.000 0.00 0.00 0.00 4.83
756 765 3.487942 TGATTCGCACGTATTTATCACCG 59.512 43.478 0.00 0.00 0.00 4.94
781 794 0.747852 TGATTCGCCGTGCTACCATA 59.252 50.000 0.00 0.00 0.00 2.74
784 797 1.429148 CCTTGATTCGCCGTGCTACC 61.429 60.000 0.00 0.00 0.00 3.18
785 798 0.459585 TCCTTGATTCGCCGTGCTAC 60.460 55.000 0.00 0.00 0.00 3.58
787 800 1.448540 CTCCTTGATTCGCCGTGCT 60.449 57.895 0.00 0.00 0.00 4.40
837 854 4.245845 TCATTATCGCGCCTGTGTATTA 57.754 40.909 0.00 0.00 0.00 0.98
843 860 1.290203 CACTTCATTATCGCGCCTGT 58.710 50.000 0.00 0.00 0.00 4.00
989 1020 3.850454 TGGTCACTCCAGACACTCT 57.150 52.632 0.00 0.00 41.93 3.24
1000 1031 0.690762 AGCCACCGTATTTGGTCACT 59.309 50.000 0.00 0.00 41.38 3.41
1019 1050 2.589157 AATCCCCCGCGTTCAGTCA 61.589 57.895 4.92 0.00 0.00 3.41
1022 1053 2.046314 ACAATCCCCCGCGTTCAG 60.046 61.111 4.92 0.00 0.00 3.02
1026 1057 2.046314 CTTCACAATCCCCCGCGT 60.046 61.111 4.92 0.00 0.00 6.01
1044 1075 4.909696 AGAGTACGATTGTCCATCTCAG 57.090 45.455 0.00 0.00 0.00 3.35
1055 1086 2.304761 TCCCTTTGCCAAGAGTACGATT 59.695 45.455 0.00 0.00 30.57 3.34
1213 1244 4.748679 GTGAGCGCCGCAAGCTTG 62.749 66.667 22.44 22.44 46.13 4.01
1262 1293 1.739562 CAGCAAGTCGTGAGAGGCC 60.740 63.158 0.00 0.00 43.49 5.19
1263 1294 0.319900 TTCAGCAAGTCGTGAGAGGC 60.320 55.000 0.00 0.00 43.49 4.70
1276 1307 2.159324 TGACAACGTTGCAATTTCAGCA 60.159 40.909 27.61 9.22 40.85 4.41
1281 1312 4.926238 TGAAAACTGACAACGTTGCAATTT 59.074 33.333 27.61 22.48 0.00 1.82
1289 1320 1.931172 CCTCGTGAAAACTGACAACGT 59.069 47.619 0.00 0.00 0.00 3.99
1297 1328 5.425630 AGAAACAAGTACCTCGTGAAAACT 58.574 37.500 0.00 0.00 0.00 2.66
1398 1429 0.248134 GGTAAACGCACGCAACAACA 60.248 50.000 0.00 0.00 0.00 3.33
1462 1496 4.349365 GGGAAAATTTGACCATACCTGGA 58.651 43.478 0.00 0.00 46.37 3.86
1472 1506 5.051153 TGTTTTTAGCCGGGAAAATTTGAC 58.949 37.500 2.18 0.00 0.00 3.18
1474 1508 5.049749 CCTTGTTTTTAGCCGGGAAAATTTG 60.050 40.000 2.18 0.00 0.00 2.32
1475 1509 5.060506 CCTTGTTTTTAGCCGGGAAAATTT 58.939 37.500 2.18 0.00 0.00 1.82
1477 1511 3.898741 TCCTTGTTTTTAGCCGGGAAAAT 59.101 39.130 2.18 0.00 0.00 1.82
1482 1516 5.592104 AATATTCCTTGTTTTTAGCCGGG 57.408 39.130 2.18 0.00 0.00 5.73
1483 1517 5.741982 CGAAATATTCCTTGTTTTTAGCCGG 59.258 40.000 0.00 0.00 0.00 6.13
1484 1518 5.229260 GCGAAATATTCCTTGTTTTTAGCCG 59.771 40.000 0.00 0.00 0.00 5.52
1485 1519 6.096695 TGCGAAATATTCCTTGTTTTTAGCC 58.903 36.000 0.00 0.00 30.14 3.93
1486 1520 7.275560 ACATGCGAAATATTCCTTGTTTTTAGC 59.724 33.333 0.00 0.00 0.00 3.09
1488 1522 9.781834 CTACATGCGAAATATTCCTTGTTTTTA 57.218 29.630 0.00 0.00 0.00 1.52
1490 1524 6.751888 GCTACATGCGAAATATTCCTTGTTTT 59.248 34.615 0.00 0.00 0.00 2.43
1491 1525 6.265577 GCTACATGCGAAATATTCCTTGTTT 58.734 36.000 0.00 0.00 0.00 2.83
1493 1527 4.275936 GGCTACATGCGAAATATTCCTTGT 59.724 41.667 0.00 0.00 44.05 3.16
1494 1528 4.275689 TGGCTACATGCGAAATATTCCTTG 59.724 41.667 0.00 0.00 44.05 3.61
1500 1588 4.071961 TCTGTGGCTACATGCGAAATAT 57.928 40.909 2.33 0.00 44.05 1.28
1523 1627 4.680171 AATCAGGAATTTCCGTCGTTTC 57.320 40.909 9.77 0.00 42.75 2.78
1531 1635 9.822185 AACATAAGCAAATAATCAGGAATTTCC 57.178 29.630 7.39 7.39 36.58 3.13
1536 1640 8.965819 TGCTAAACATAAGCAAATAATCAGGAA 58.034 29.630 0.00 0.00 46.57 3.36
1622 1736 1.516110 AGGATGGCCAGTTCTATGCT 58.484 50.000 13.05 0.00 36.29 3.79
1688 1802 2.095252 GCTTGGAGAACTCGACGGC 61.095 63.158 0.00 0.00 0.00 5.68
1775 1892 8.322906 TGTTTCACCATCAGAATTACAGTAAG 57.677 34.615 0.00 0.00 0.00 2.34
1776 1893 8.684386 TTGTTTCACCATCAGAATTACAGTAA 57.316 30.769 0.00 0.00 0.00 2.24
1777 1894 7.936847 ACTTGTTTCACCATCAGAATTACAGTA 59.063 33.333 0.00 0.00 0.00 2.74
1778 1895 6.772716 ACTTGTTTCACCATCAGAATTACAGT 59.227 34.615 0.00 0.00 0.00 3.55
1782 1899 5.334802 CGCACTTGTTTCACCATCAGAATTA 60.335 40.000 0.00 0.00 0.00 1.40
1831 1961 1.069022 CACCTGAGAACACCAATTGCG 60.069 52.381 0.00 0.00 0.00 4.85
1889 2019 4.373116 GCACAAGCTCCCGACCGA 62.373 66.667 0.00 0.00 37.91 4.69
2014 2144 1.078143 AGCGGTGAAGAAGGCCATC 60.078 57.895 5.01 1.19 0.00 3.51
2021 2151 1.377202 GCCCATGAGCGGTGAAGAA 60.377 57.895 0.00 0.00 0.00 2.52
2097 2227 4.768448 TGAATCTTGAAGACATGGTTGCAT 59.232 37.500 0.00 0.00 0.00 3.96
2102 2232 5.495926 ACTCTGAATCTTGAAGACATGGT 57.504 39.130 0.00 0.00 0.00 3.55
2103 2233 6.047870 CCTACTCTGAATCTTGAAGACATGG 58.952 44.000 0.00 0.00 0.00 3.66
2104 2234 6.047870 CCCTACTCTGAATCTTGAAGACATG 58.952 44.000 0.00 0.00 0.00 3.21
2105 2235 5.723887 ACCCTACTCTGAATCTTGAAGACAT 59.276 40.000 0.00 0.00 0.00 3.06
2106 2236 5.087323 ACCCTACTCTGAATCTTGAAGACA 58.913 41.667 0.00 0.00 0.00 3.41
2107 2237 5.669164 ACCCTACTCTGAATCTTGAAGAC 57.331 43.478 0.00 0.00 0.00 3.01
2123 2253 4.099633 AGTTAGTCCTAACCCAACCCTAC 58.900 47.826 12.41 0.00 44.79 3.18
2126 2256 3.560668 CCAAGTTAGTCCTAACCCAACCC 60.561 52.174 12.41 0.00 44.79 4.11
2128 2258 3.079578 GCCAAGTTAGTCCTAACCCAAC 58.920 50.000 12.41 0.00 44.79 3.77
2129 2259 2.712087 TGCCAAGTTAGTCCTAACCCAA 59.288 45.455 12.41 0.00 44.79 4.12
2130 2260 2.039348 GTGCCAAGTTAGTCCTAACCCA 59.961 50.000 12.41 4.26 44.79 4.51
2131 2261 2.039348 TGTGCCAAGTTAGTCCTAACCC 59.961 50.000 12.41 2.15 44.79 4.11
2132 2262 3.072211 GTGTGCCAAGTTAGTCCTAACC 58.928 50.000 12.41 0.36 44.79 2.85
2133 2263 3.995048 GAGTGTGCCAAGTTAGTCCTAAC 59.005 47.826 8.79 8.79 44.22 2.34
2152 2282 1.625818 GTCATCTGGGTCACAAGGAGT 59.374 52.381 0.00 0.00 0.00 3.85
2154 2284 0.608130 CGTCATCTGGGTCACAAGGA 59.392 55.000 0.00 0.00 0.00 3.36
2273 2409 3.165124 CGTAGAAGAAGAGCTCGAACAC 58.835 50.000 8.37 1.71 0.00 3.32
2296 2432 0.417841 AGGGGATGTAGAGGTGGTGT 59.582 55.000 0.00 0.00 0.00 4.16
2344 2480 1.406539 ACGTACAAGAACACGGTGACT 59.593 47.619 16.29 10.58 42.35 3.41
2429 2565 2.128507 GGGAAGAGACGAGGCGGAT 61.129 63.158 0.00 0.00 0.00 4.18
2473 2609 1.947456 GGGCTTTTGTCGAAGTTGAGT 59.053 47.619 0.00 0.00 0.00 3.41
2484 2620 1.686587 GTTGCTTACTGGGGCTTTTGT 59.313 47.619 0.00 0.00 0.00 2.83
2495 2631 5.221441 TGCATGGATATCTACGTTGCTTACT 60.221 40.000 12.57 0.00 0.00 2.24
2544 2680 5.822519 AGATCTGCAACAAAGTTGTCAGTTA 59.177 36.000 21.74 12.12 41.31 2.24
2565 2708 2.695666 CTCGTGGGATTGTACCTCAGAT 59.304 50.000 0.00 0.00 0.00 2.90
2567 2710 1.471676 GCTCGTGGGATTGTACCTCAG 60.472 57.143 0.00 0.00 0.00 3.35
2573 2716 1.447140 GCGTGCTCGTGGGATTGTA 60.447 57.895 10.18 0.00 39.49 2.41
2626 2769 2.610859 ACCGAGAAGGGGTGCCAT 60.611 61.111 0.00 0.00 46.96 4.40
2704 2847 0.458543 CGTACAGCTTCTGCGTCCAT 60.459 55.000 0.00 0.00 45.42 3.41
2807 2950 0.620556 GAGTCATGGCCCAAGAAGGA 59.379 55.000 0.00 0.00 41.22 3.36
2821 2964 1.135721 CTGATCATCACCAGCGAGTCA 59.864 52.381 0.00 0.00 0.00 3.41
2860 3003 0.460311 GGATGACGGAGATGAACGGT 59.540 55.000 0.00 0.00 0.00 4.83
2903 3046 3.723348 GGACGCCGTTTCTGCCAC 61.723 66.667 0.00 0.00 0.00 5.01
2928 3071 3.137459 CGCAGACGAGGAGGAGCT 61.137 66.667 0.00 0.00 43.93 4.09
2956 3099 3.219928 ATGTCGAGCTCGGCCGAT 61.220 61.111 35.43 21.76 44.42 4.18
3587 3731 5.049828 AGAGCTAAACAAAACCAAATGTGC 58.950 37.500 0.00 0.00 0.00 4.57
3588 3732 5.050837 GCAGAGCTAAACAAAACCAAATGTG 60.051 40.000 0.00 0.00 0.00 3.21
3627 3771 5.392919 CCTGCACAATTCAATTCGACCATTA 60.393 40.000 0.00 0.00 0.00 1.90
3651 3795 1.105759 GTGAATCCCCAGCAGCATCC 61.106 60.000 0.00 0.00 0.00 3.51
3757 3901 5.620738 AGCTTATAGACTGGAAATGCAGA 57.379 39.130 9.02 0.00 0.00 4.26
3845 3989 0.379669 ACGGCGATGTACGAACTAGG 59.620 55.000 16.62 0.00 45.77 3.02
3860 4098 3.505464 ATCTACACAACAGACTACGGC 57.495 47.619 0.00 0.00 0.00 5.68
3935 4278 5.009110 CGAGCTAGAGAAATGGTGATAGTCA 59.991 44.000 0.00 0.00 0.00 3.41
3991 4334 9.047371 TGTATCAGTTCAATCGTTTGTTTCTTA 57.953 29.630 6.14 0.00 34.32 2.10
3992 4335 7.925993 TGTATCAGTTCAATCGTTTGTTTCTT 58.074 30.769 6.14 0.00 34.32 2.52
4077 6082 9.209175 GGCTTAAATTCATCTATTATCACTCGT 57.791 33.333 0.00 0.00 0.00 4.18
4081 6086 7.119846 AGGCGGCTTAAATTCATCTATTATCAC 59.880 37.037 5.25 0.00 0.00 3.06
4113 6118 2.623502 CGGAGACCGGGGATCCTATAAT 60.624 54.545 12.58 0.00 44.15 1.28
4114 6119 1.272313 CGGAGACCGGGGATCCTATAA 60.272 57.143 12.58 0.00 44.15 0.98
4116 6121 1.076906 CGGAGACCGGGGATCCTAT 59.923 63.158 12.58 0.00 44.15 2.57
4142 6154 2.228822 CAGTTTGTGGGAGCACAATACC 59.771 50.000 0.00 0.00 43.54 2.73
4176 6188 0.320374 TGACTCTAGTTTGTGGGCGG 59.680 55.000 0.00 0.00 0.00 6.13
4209 6221 0.605319 GTTGTTCGGCACTCCCATGA 60.605 55.000 0.00 0.00 0.00 3.07
4211 6223 1.303317 GGTTGTTCGGCACTCCCAT 60.303 57.895 0.00 0.00 0.00 4.00
4213 6225 2.671963 GGGTTGTTCGGCACTCCC 60.672 66.667 0.00 0.00 35.43 4.30
4218 6230 1.002624 GATGGAGGGTTGTTCGGCA 60.003 57.895 0.00 0.00 0.00 5.69
4307 6319 2.668212 GCCGCTGGTGCTACAACA 60.668 61.111 0.00 0.00 36.97 3.33
4340 6352 3.370231 TGCTGCGACGGAGCTACA 61.370 61.111 35.69 18.05 37.35 2.74
4366 6378 0.179048 TGTAATGGAGCATCGCCAGG 60.179 55.000 0.00 0.00 36.65 4.45
4368 6380 1.065491 AGTTGTAATGGAGCATCGCCA 60.065 47.619 0.00 0.00 37.78 5.69
4371 6383 2.009051 TGCAGTTGTAATGGAGCATCG 58.991 47.619 0.00 0.00 34.37 3.84
4389 6401 1.074319 CACATTTGGTGCTGCGATGC 61.074 55.000 0.00 0.00 41.36 3.91
4405 6452 2.006805 TGGGGATTTGCAACATCACA 57.993 45.000 19.00 14.70 0.00 3.58
4427 6474 2.100631 GGAACATCGCCGTGGAGTG 61.101 63.158 0.00 0.00 0.00 3.51
4428 6475 2.264794 GGAACATCGCCGTGGAGT 59.735 61.111 0.00 0.00 0.00 3.85
4444 6504 0.031857 CTGCAGTAGAGGATCGCTGG 59.968 60.000 5.25 0.00 41.13 4.85
4446 6506 1.039785 TGCTGCAGTAGAGGATCGCT 61.040 55.000 16.64 0.00 42.67 4.93
4461 6521 2.537529 CGAAATATCGTTGGTGCTGCTG 60.538 50.000 0.00 0.00 44.06 4.41
4502 6562 1.874231 GGATCATCATCTGTGCTGCAG 59.126 52.381 10.11 10.11 46.34 4.41
4546 6606 1.364171 GGAGGTCGTGCATCGCTAT 59.636 57.895 0.00 0.00 39.67 2.97
4553 6613 2.359850 GCATTGGGAGGTCGTGCA 60.360 61.111 0.00 0.00 35.93 4.57
4557 6617 0.816825 CATGGAGCATTGGGAGGTCG 60.817 60.000 0.00 0.00 34.46 4.79
4593 6653 2.027625 GACACCGTAGCACCACAGC 61.028 63.158 0.00 0.00 0.00 4.40
4594 6654 1.733041 CGACACCGTAGCACCACAG 60.733 63.158 0.00 0.00 0.00 3.66
4617 6677 0.668535 GGAAAGCCACTGTTGTGACC 59.331 55.000 0.00 0.00 46.55 4.02
4631 6691 1.074566 AGTGCTTTGAGGGGAGGAAAG 59.925 52.381 0.00 0.00 0.00 2.62
4636 6696 2.636830 CATACAGTGCTTTGAGGGGAG 58.363 52.381 0.00 0.00 0.00 4.30
4654 6716 1.524008 CCATCGCTGCATCATGCCAT 61.524 55.000 7.30 0.00 44.23 4.40
4659 6721 0.179702 AGACACCATCGCTGCATCAT 59.820 50.000 0.00 0.00 0.00 2.45
4699 6761 2.824041 CGCCACCATTCCCTTCGG 60.824 66.667 0.00 0.00 0.00 4.30
4721 6783 1.302511 CTAAACCTGCCCGTGTGCT 60.303 57.895 0.00 0.00 0.00 4.40
4729 6791 1.745489 CGTCCTGCCTAAACCTGCC 60.745 63.158 0.00 0.00 0.00 4.85
4748 6810 2.093235 ACTATGACAGCTTCCTTCCTGC 60.093 50.000 0.00 0.00 32.37 4.85
4751 6813 2.501723 TCCACTATGACAGCTTCCTTCC 59.498 50.000 0.00 0.00 0.00 3.46
4760 6822 2.114616 AGCTCCCTTCCACTATGACAG 58.885 52.381 0.00 0.00 0.00 3.51
4765 6827 2.436173 GCTAACAGCTCCCTTCCACTAT 59.564 50.000 0.00 0.00 38.45 2.12
4766 6828 1.831736 GCTAACAGCTCCCTTCCACTA 59.168 52.381 0.00 0.00 38.45 2.74
4781 6843 4.575236 GCCTACCTAATGGTTCTTGCTAAC 59.425 45.833 0.00 0.00 46.05 2.34
4782 6844 4.384868 GGCCTACCTAATGGTTCTTGCTAA 60.385 45.833 0.00 0.00 46.05 3.09
4784 6846 2.092375 GGCCTACCTAATGGTTCTTGCT 60.092 50.000 0.00 0.00 46.05 3.91
4785 6847 2.298610 GGCCTACCTAATGGTTCTTGC 58.701 52.381 0.00 0.00 46.05 4.01
4787 6849 2.474112 TCGGCCTACCTAATGGTTCTT 58.526 47.619 0.00 0.00 46.05 2.52
4798 6860 0.672711 GTTCACCAGTTCGGCCTACC 60.673 60.000 0.00 0.00 39.03 3.18
4800 6862 1.290955 CGTTCACCAGTTCGGCCTA 59.709 57.895 0.00 0.00 39.03 3.93
4804 6866 2.030562 AGGCGTTCACCAGTTCGG 59.969 61.111 0.00 0.00 42.50 4.30
4806 6868 1.507141 CCACAGGCGTTCACCAGTTC 61.507 60.000 0.00 0.00 0.00 3.01
4822 6884 2.094675 CACATGTTCTTCCATCCCCAC 58.905 52.381 0.00 0.00 0.00 4.61
4872 6934 1.142060 CTCTCTCTCTCTCCGGCCTTA 59.858 57.143 0.00 0.00 0.00 2.69
4873 6935 0.106719 CTCTCTCTCTCTCCGGCCTT 60.107 60.000 0.00 0.00 0.00 4.35
4879 6941 2.370189 CTCTCCCTCTCTCTCTCTCTCC 59.630 59.091 0.00 0.00 0.00 3.71
4895 6957 2.870411 GCGTTACTCTCTCTCTCTCTCC 59.130 54.545 0.00 0.00 0.00 3.71
4905 6967 2.416432 GCTCGGGGCGTTACTCTCT 61.416 63.158 0.00 0.00 0.00 3.10
4925 6987 4.394712 AAGTCTTCTGGGGCGCCG 62.395 66.667 22.54 6.96 0.00 6.46
4926 6988 2.436824 GAAGTCTTCTGGGGCGCC 60.437 66.667 21.18 21.18 0.00 6.53
4927 6989 2.436824 GGAAGTCTTCTGGGGCGC 60.437 66.667 12.31 0.00 0.00 6.53
4928 6990 1.078848 CTGGAAGTCTTCTGGGGCG 60.079 63.158 12.31 0.00 0.00 6.13
4929 6991 1.377856 GCTGGAAGTCTTCTGGGGC 60.378 63.158 12.31 7.87 35.30 5.80
4930 6992 1.573108 TAGCTGGAAGTCTTCTGGGG 58.427 55.000 12.31 2.35 35.30 4.96
4931 6993 3.432890 GGAATAGCTGGAAGTCTTCTGGG 60.433 52.174 12.31 4.53 35.30 4.45
4932 6994 3.739519 CGGAATAGCTGGAAGTCTTCTGG 60.740 52.174 12.31 6.74 35.30 3.86
4933 6995 3.131223 TCGGAATAGCTGGAAGTCTTCTG 59.869 47.826 12.31 7.07 35.30 3.02
4934 6996 3.366396 TCGGAATAGCTGGAAGTCTTCT 58.634 45.455 12.31 0.00 35.30 2.85
4935 6997 3.131400 ACTCGGAATAGCTGGAAGTCTTC 59.869 47.826 3.80 3.80 35.30 2.87
4936 6998 3.100671 ACTCGGAATAGCTGGAAGTCTT 58.899 45.455 0.00 0.00 35.30 3.01
4937 6999 2.741145 ACTCGGAATAGCTGGAAGTCT 58.259 47.619 0.00 0.00 35.30 3.24
4938 7000 3.528597 AACTCGGAATAGCTGGAAGTC 57.471 47.619 0.00 0.00 35.30 3.01
4939 7001 3.676324 CGAAACTCGGAATAGCTGGAAGT 60.676 47.826 0.00 0.00 36.00 3.01
4940 7002 2.860735 CGAAACTCGGAATAGCTGGAAG 59.139 50.000 0.00 0.00 36.00 3.46
4941 7003 2.888594 CGAAACTCGGAATAGCTGGAA 58.111 47.619 0.00 0.00 36.00 3.53
4942 7004 1.470979 GCGAAACTCGGAATAGCTGGA 60.471 52.381 0.00 0.00 40.84 3.86
4943 7005 0.931005 GCGAAACTCGGAATAGCTGG 59.069 55.000 0.00 0.00 40.84 4.85
4944 7006 0.931005 GGCGAAACTCGGAATAGCTG 59.069 55.000 0.00 0.00 40.84 4.24
4945 7007 0.527817 CGGCGAAACTCGGAATAGCT 60.528 55.000 0.00 0.00 40.84 3.32
4946 7008 0.804933 ACGGCGAAACTCGGAATAGC 60.805 55.000 16.62 0.00 40.84 2.97
4947 7009 0.921347 CACGGCGAAACTCGGAATAG 59.079 55.000 16.62 0.00 40.84 1.73
4948 7010 0.244450 ACACGGCGAAACTCGGAATA 59.756 50.000 16.62 0.00 40.84 1.75
4949 7011 1.005394 ACACGGCGAAACTCGGAAT 60.005 52.632 16.62 0.00 40.84 3.01
4950 7012 1.952133 CACACGGCGAAACTCGGAA 60.952 57.895 16.62 0.00 40.84 4.30
4951 7013 2.355363 CACACGGCGAAACTCGGA 60.355 61.111 16.62 0.00 40.84 4.55
4952 7014 1.768112 AAACACACGGCGAAACTCGG 61.768 55.000 16.62 0.00 40.84 4.63
4953 7015 0.027063 AAAACACACGGCGAAACTCG 59.973 50.000 16.62 0.00 43.89 4.18
4954 7016 3.909957 AAAACACACGGCGAAACTC 57.090 47.368 16.62 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.