AutoCloner

Multiple sequence alignment - TraesCS2B01G414000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G414000	chr2B	100.000	3509	0	0	1	3509	591914986	591911478	0.000000e+00	6481
1	TraesCS2B01G414000	chr2B	91.111	495	37	6	3019	3509	732885379	732885870	0.000000e+00	664
2	TraesCS2B01G414000	chr2D	92.779	3102	87	47	1	3026	503438887	503435847	0.000000e+00	4361
3	TraesCS2B01G414000	chr2A	93.129	2969	95	36	115	3014	649486395	649483467	0.000000e+00	4252
4	TraesCS2B01G414000	chr2A	89.979	469	25	8	2563	3016	649478341	649477880	1.400000e-163	586
5	TraesCS2B01G414000	chr2A	92.045	88	5	1	1	88	649486477	649486392	4.760000e-24	122
6	TraesCS2B01G414000	chr6B	85.145	1205	155	18	934	2131	479397431	479396244	0.000000e+00	1212
7	TraesCS2B01G414000	chr6A	84.815	1192	158	17	946	2131	480805372	480806546	0.000000e+00	1177
8	TraesCS2B01G414000	chr6A	89.919	496	43	6	3019	3509	286335428	286335921	1.780000e-177	632
9	TraesCS2B01G414000	chr6D	84.648	1192	160	17	946	2131	341078253	341079427	0.000000e+00	1166
10	TraesCS2B01G414000	chr6D	89.919	496	45	4	3017	3509	455521438	455520945	4.940000e-178	634
11	TraesCS2B01G414000	chr1A	78.956	1169	207	29	964	2123	333499873	333498735	0.000000e+00	760
12	TraesCS2B01G414000	chr1D	78.785	1169	209	29	964	2123	269514801	269515939	0.000000e+00	749
13	TraesCS2B01G414000	chr1D	89.676	494	44	5	3017	3506	432632914	432633404	1.070000e-174	623
14	TraesCS2B01G414000	chr4D	79.796	980	165	28	1159	2123	497698157	497697196	0.000000e+00	682
15	TraesCS2B01G414000	chr4D	89.135	497	50	3	3016	3509	28420238	28419743	1.790000e-172	616
16	TraesCS2B01G414000	chr5B	90.818	501	38	5	3017	3509	422109392	422109892	0.000000e+00	664
17	TraesCS2B01G414000	chr5B	89.336	497	46	5	3019	3509	325685041	325684546	4.980000e-173	617
18	TraesCS2B01G414000	chr4B	79.472	984	161	31	1159	2123	639010509	639011470	0.000000e+00	660
19	TraesCS2B01G414000	chr7B	89.249	493	49	4	3019	3509	533563045	533562555	6.440000e-172	614
20	TraesCS2B01G414000	chr7D	88.934	497	50	5	3015	3509	69044537	69045030	3.000000e-170	608
21	TraesCS2B01G414000	chr3A	75.705	461	80	24	1119	1572	598410860	598410425	5.940000e-48	202

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G414000	chr2B	591911478	591914986	3508	True	6481	6481	100.000	1	3509	1	chr2B.!!$R1	3508
1	TraesCS2B01G414000	chr2D	503435847	503438887	3040	True	4361	4361	92.779	1	3026	1	chr2D.!!$R1	3025
2	TraesCS2B01G414000	chr2A	649483467	649486477	3010	True	2187	4252	92.587	1	3014	2	chr2A.!!$R2	3013
3	TraesCS2B01G414000	chr6B	479396244	479397431	1187	True	1212	1212	85.145	934	2131	1	chr6B.!!$R1	1197
4	TraesCS2B01G414000	chr6A	480805372	480806546	1174	False	1177	1177	84.815	946	2131	1	chr6A.!!$F2	1185
5	TraesCS2B01G414000	chr6D	341078253	341079427	1174	False	1166	1166	84.648	946	2131	1	chr6D.!!$F1	1185
6	TraesCS2B01G414000	chr1A	333498735	333499873	1138	True	760	760	78.956	964	2123	1	chr1A.!!$R1	1159
7	TraesCS2B01G414000	chr1D	269514801	269515939	1138	False	749	749	78.785	964	2123	1	chr1D.!!$F1	1159
8	TraesCS2B01G414000	chr4D	497697196	497698157	961	True	682	682	79.796	1159	2123	1	chr4D.!!$R2	964
9	TraesCS2B01G414000	chr5B	422109392	422109892	500	False	664	664	90.818	3017	3509	1	chr5B.!!$F1	492
10	TraesCS2B01G414000	chr4B	639010509	639011470	961	False	660	660	79.472	1159	2123	1	chr4B.!!$F1	964

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Hairpin	End Stability	Orientation
411	446	0.034380	AGGAGATGACCGAACGAGGA	60.034	55.0	34.73	3.71	F
625	664	0.251653	TACAGCAGTTCCTCCTCGGT	60.252	55.0	0.00	4.69	F
746	802	1.668419	ATACCAACATTCGCTCAGGC	58.332	50.0	0.00	4.85	F

Position	MSA Position	Penalty	Sequence	TM	GC	End Stability	Orientation
1795	1863	1.080025	CGACACCGTCTTCTTCCCC	60.080	63.158	4.81	R
1916	1984	1.766461	CCTCCGCCTTCCCCTACAT	60.766	63.158	2.29	R
2738	2849	0.174845	TTAGCGACGGGACAATGGAG	59.825	55.000	3.86	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
82	83	3.959975	CACAAACACACGCCCCCG	61.960	66.667	0.00	0.00	41.14	5.73
100	101	2.743718	CACCAGAACCGTGCTCCT	59.256	61.111	0.00	0.00	0.00	3.69
101	102	1.374758	CACCAGAACCGTGCTCCTC	60.375	63.158	0.00	0.00	0.00	3.71
102	103	2.266055	CCAGAACCGTGCTCCTCC	59.734	66.667	0.00	0.00	0.00	4.30
103	104	2.286523	CCAGAACCGTGCTCCTCCT	61.287	63.158	0.00	0.00	0.00	3.69
104	105	1.079543	CAGAACCGTGCTCCTCCTG	60.080	63.158	0.00	0.00	0.00	3.86
105	106	1.534235	AGAACCGTGCTCCTCCTGT	60.534	57.895	0.00	0.00	0.00	4.00
106	107	1.122019	AGAACCGTGCTCCTCCTGTT	61.122	55.000	0.00	0.00	0.00	3.16
107	108	0.951040	GAACCGTGCTCCTCCTGTTG	60.951	60.000	0.00	0.00	0.00	3.33
108	109	2.046892	CCGTGCTCCTCCTGTTGG	60.047	66.667	0.00	0.00	0.00	3.77
109	110	2.743928	CGTGCTCCTCCTGTTGGC	60.744	66.667	0.00	0.00	0.00	4.52
110	111	2.753029	GTGCTCCTCCTGTTGGCT	59.247	61.111	0.00	0.00	0.00	4.75
111	112	1.673665	GTGCTCCTCCTGTTGGCTG	60.674	63.158	0.00	0.00	0.00	4.85
112	113	2.149383	TGCTCCTCCTGTTGGCTGT	61.149	57.895	0.00	0.00	0.00	4.40
113	114	1.073897	GCTCCTCCTGTTGGCTGTT	59.926	57.895	0.00	0.00	0.00	3.16
233	260	0.521735	CCTTTTAGCACAGCGAACCC	59.478	55.000	0.00	0.00	0.00	4.11
289	316	3.797507	CTGTTGTGGGGGCAGCAGT	62.798	63.158	0.00	0.00	41.00	4.40
316	348	2.266055	CTGAGGAAGTCCGGCCAC	59.734	66.667	2.24	0.00	42.08	5.01
386	421	1.589630	CAGCAGCACGGTAGGTACA	59.410	57.895	0.00	0.00	0.00	2.90
411	446	0.034380	AGGAGATGACCGAACGAGGA	60.034	55.000	0.00	0.00	34.73	3.71
412	447	0.382515	GGAGATGACCGAACGAGGAG	59.617	60.000	0.00	0.00	34.73	3.69
413	448	0.382515	GAGATGACCGAACGAGGAGG	59.617	60.000	0.00	0.00	34.73	4.30
625	664	0.251653	TACAGCAGTTCCTCCTCGGT	60.252	55.000	0.00	0.00	0.00	4.69
669	711	6.714810	TGAGCCATACATCAGTAAACAAACTT	59.285	34.615	0.00	0.00	33.13	2.66
707	753	6.899393	AAGTAATGTTTCCACACACATCAT	57.101	33.333	0.00	0.00	35.03	2.45
708	754	6.899393	AGTAATGTTTCCACACACATCATT	57.101	33.333	0.00	0.00	35.03	2.57
720	766	9.253832	TCCACACACATCATTAATCCTTTATTT	57.746	29.630	0.00	0.00	0.00	1.40
746	802	1.668419	ATACCAACATTCGCTCAGGC	58.332	50.000	0.00	0.00	0.00	4.85
778	834	4.813750	ACCTAGTACGCAATTACCAGTT	57.186	40.909	0.00	0.00	0.00	3.16
838	900	9.195411	ACTATCTTGTGTTGCAATTGTATTTTG	57.805	29.630	0.59	0.00	36.36	2.44
840	902	6.577103	TCTTGTGTTGCAATTGTATTTTGGA	58.423	32.000	0.59	0.00	36.36	3.53
841	903	6.478344	TCTTGTGTTGCAATTGTATTTTGGAC	59.522	34.615	0.59	0.00	36.36	4.02
842	904	5.664457	TGTGTTGCAATTGTATTTTGGACA	58.336	33.333	0.59	0.00	0.00	4.02
843	905	5.752472	TGTGTTGCAATTGTATTTTGGACAG	59.248	36.000	0.59	0.00	0.00	3.51
844	906	5.752955	GTGTTGCAATTGTATTTTGGACAGT	59.247	36.000	0.59	0.00	0.00	3.55
847	909	7.981789	TGTTGCAATTGTATTTTGGACAGTTAA	59.018	29.630	0.59	0.00	0.00	2.01
848	910	8.487176	GTTGCAATTGTATTTTGGACAGTTAAG	58.513	33.333	0.59	0.00	0.00	1.85
849	911	6.644592	TGCAATTGTATTTTGGACAGTTAAGC	59.355	34.615	7.40	0.00	0.00	3.09
854	922	7.067532	TGTATTTTGGACAGTTAAGCGTATG	57.932	36.000	0.00	0.00	0.00	2.39
891	959	3.106054	TCAGCAATTGGGCCATTTGTAT	58.894	40.909	30.94	21.64	30.43	2.29
892	960	4.285020	TCAGCAATTGGGCCATTTGTATA	58.715	39.130	30.94	18.91	30.43	1.47
893	961	4.900652	TCAGCAATTGGGCCATTTGTATAT	59.099	37.500	30.94	17.92	30.43	0.86
894	962	5.366186	TCAGCAATTGGGCCATTTGTATATT	59.634	36.000	30.94	15.19	30.43	1.28
895	963	6.552725	TCAGCAATTGGGCCATTTGTATATTA	59.447	34.615	30.94	15.26	30.43	0.98
896	964	6.869913	CAGCAATTGGGCCATTTGTATATTAG	59.130	38.462	30.94	15.75	30.43	1.73
897	965	6.554605	AGCAATTGGGCCATTTGTATATTAGT	59.445	34.615	30.94	11.64	30.43	2.24
1795	1863	2.022129	GACGGTGAGCAGGTTGTCG	61.022	63.158	0.00	0.00	0.00	4.35
2171	2239	2.188469	GGGCGGCCTTATTGTCGA	59.812	61.111	22.87	0.00	0.00	4.20
2446	2520	3.257561	CGACCTCGCAATGCCTCG	61.258	66.667	0.00	0.00	0.00	4.63
2451	2525	1.448540	CTCGCAATGCCTCGTCCTT	60.449	57.895	0.00	0.00	0.00	3.36
2605	2699	1.141657	TGTTGCTCTGCTTCTGGTTCT	59.858	47.619	0.00	0.00	0.00	3.01
2701	2812	3.230990	GTGGGGCGGCACCTTTTT	61.231	61.111	23.89	0.00	39.10	1.94
2743	2854	4.790962	CTGGTGCGCTGCCTCCAT	62.791	66.667	19.25	0.00	33.09	3.41
2777	2888	9.554724	TCGCTAATCAAGTTCACATTTATTTTC	57.445	29.630	0.00	0.00	0.00	2.29
2778	2889	9.340695	CGCTAATCAAGTTCACATTTATTTTCA	57.659	29.630	0.00	0.00	0.00	2.69
2896	3022	1.144969	TGACGCTGGCTTCTTTTACG	58.855	50.000	1.14	0.00	0.00	3.18
2926	3052	4.527816	TGGGAGGTTCTTCAATTGATTTGG	59.472	41.667	9.40	0.86	35.92	3.28
3066	3192	1.060622	CGCCGCGCCGTAAAATTAA	59.939	52.632	0.00	0.00	0.00	1.40
3074	3200	4.373815	CGCGCCGTAAAATTAAACGTTTTT	60.374	37.500	20.19	9.79	37.40	1.94
3099	3227	1.597663	GCGCAATCGGTATAGTTGCTT	59.402	47.619	0.30	0.00	44.44	3.91
3120	3248	2.277884	CGGGCGCGCAAAAATAGG	60.278	61.111	34.42	7.95	0.00	2.57
3144	3272	1.581934	GCGGCATATGTAGTTCAGCA	58.418	50.000	4.29	0.00	0.00	4.41
3147	3275	1.261619	GGCATATGTAGTTCAGCACGC	59.738	52.381	4.29	0.00	0.00	5.34
3228	3356	2.433318	GCGCTCGCTCTCCAACTT	60.433	61.111	0.00	0.00	38.26	2.66
3232	3360	0.107945	GCTCGCTCTCCAACTTCCAT	60.108	55.000	0.00	0.00	0.00	3.41
3242	3371	1.686115	CCAACTTCCATCCCCATCCAC	60.686	57.143	0.00	0.00	0.00	4.02
3291	3420	3.186047	CGATCGTTCCGGCGCTTT	61.186	61.111	7.64	0.00	0.00	3.51
3292	3421	2.701606	GATCGTTCCGGCGCTTTC	59.298	61.111	7.64	0.00	0.00	2.62
3385	3516	4.415332	GACGAACAGCGCCCGAGA	62.415	66.667	2.29	0.00	46.04	4.04
3425	3556	2.399396	CGCAAGGTGTTCGACAAAAT	57.601	45.000	0.00	0.00	0.00	1.82
3431	3562	3.686016	AGGTGTTCGACAAAATGCCTAT	58.314	40.909	0.00	0.00	0.00	2.57
3473	3604	4.992319	ACTTCATGAATTTGGTGCATGTTG	59.008	37.500	8.96	0.00	40.12	3.33
3490	3624	8.798153	GTGCATGTTGATTGTAGTTTTTATAGC	58.202	33.333	0.00	0.00	0.00	2.97

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
18	19	4.287720	GGTTTTTACTTCGTTTCTGGCAG	58.712	43.478	8.58	8.58	0.00	4.85
47	48	0.465460	TGTGTGAAACTGGGTCAGCC	60.465	55.000	0.00	0.00	38.04	4.85
84	85	2.584391	GGAGGAGCACGGTTCTGGT	61.584	63.158	0.00	0.00	0.00	4.00
85	86	2.266055	GGAGGAGCACGGTTCTGG	59.734	66.667	0.00	0.00	0.00	3.86
86	87	1.079543	CAGGAGGAGCACGGTTCTG	60.080	63.158	0.00	0.00	0.00	3.02
87	88	1.122019	AACAGGAGGAGCACGGTTCT	61.122	55.000	0.00	0.00	0.00	3.01
88	89	0.951040	CAACAGGAGGAGCACGGTTC	60.951	60.000	0.00	0.00	0.00	3.62
89	90	1.071471	CAACAGGAGGAGCACGGTT	59.929	57.895	0.00	0.00	0.00	4.44
90	91	2.743718	CAACAGGAGGAGCACGGT	59.256	61.111	0.00	0.00	0.00	4.83
91	92	2.046892	CCAACAGGAGGAGCACGG	60.047	66.667	0.00	0.00	0.00	4.94
92	93	2.743928	GCCAACAGGAGGAGCACG	60.744	66.667	0.00	0.00	0.00	5.34
93	94	1.673665	CAGCCAACAGGAGGAGCAC	60.674	63.158	0.00	0.00	0.00	4.40
94	95	1.708993	AACAGCCAACAGGAGGAGCA	61.709	55.000	0.00	0.00	0.00	4.26
95	96	1.073897	AACAGCCAACAGGAGGAGC	59.926	57.895	0.00	0.00	0.00	4.70
96	97	1.239968	GCAACAGCCAACAGGAGGAG	61.240	60.000	0.00	0.00	0.00	3.69
97	98	1.228245	GCAACAGCCAACAGGAGGA	60.228	57.895	0.00	0.00	0.00	3.71
98	99	3.359002	GCAACAGCCAACAGGAGG	58.641	61.111	0.00	0.00	0.00	4.30
111	112	3.747976	GCGGGGTGTGATGGCAAC	61.748	66.667	0.00	0.00	0.00	4.17
253	280	1.303317	GTTGAAGGGGACGTGGCAT	60.303	57.895	0.00	0.00	0.00	4.40
263	290	0.827507	CCCCCACAACAGTTGAAGGG	60.828	60.000	27.93	27.93	43.91	3.95
289	316	1.078918	CTTCCTCAGCATCGTGCCA	60.079	57.895	6.39	0.00	46.52	4.92
300	327	2.525629	TGTGGCCGGACTTCCTCA	60.526	61.111	9.82	2.21	0.00	3.86
386	421	0.904865	TTCGGTCATCTCCTGCCTGT	60.905	55.000	0.00	0.00	0.00	4.00
411	446	4.382793	GGAAGGTATAACAAACGAGAGCCT	60.383	45.833	0.00	0.00	0.00	4.58
412	447	3.869832	GGAAGGTATAACAAACGAGAGCC	59.130	47.826	0.00	0.00	0.00	4.70
413	448	4.501071	TGGAAGGTATAACAAACGAGAGC	58.499	43.478	0.00	0.00	0.00	4.09
625	664	1.881324	CACATGGATGTTGTGCAGTCA	59.119	47.619	0.00	0.00	39.39	3.41
694	740	8.821686	AATAAAGGATTAATGATGTGTGTGGA	57.178	30.769	0.00	0.00	0.00	4.02
720	766	5.979993	TGAGCGAATGTTGGTATACCTTTA	58.020	37.500	22.41	8.95	36.82	1.85
723	769	3.181465	CCTGAGCGAATGTTGGTATACCT	60.181	47.826	22.41	1.59	36.82	3.08
725	771	2.544267	GCCTGAGCGAATGTTGGTATAC	59.456	50.000	0.00	0.00	0.00	1.47
726	772	2.169561	TGCCTGAGCGAATGTTGGTATA	59.830	45.455	0.00	0.00	44.31	1.47
727	773	1.065491	TGCCTGAGCGAATGTTGGTAT	60.065	47.619	0.00	0.00	44.31	2.73
731	787	0.445436	GACTGCCTGAGCGAATGTTG	59.555	55.000	0.00	0.00	44.31	3.33
746	802	2.735134	GCGTACTAGGTTTGGTTGACTG	59.265	50.000	0.00	0.00	0.00	3.51
778	834	3.492656	GCAATGGTAGGAGAAGCGTATCA	60.493	47.826	0.00	0.00	32.98	2.15
835	897	7.549839	AGTATACATACGCTTAACTGTCCAAA	58.450	34.615	5.50	0.00	38.28	3.28
838	900	6.016443	AGGAGTATACATACGCTTAACTGTCC	60.016	42.308	5.50	0.00	38.28	4.02
840	902	6.956202	AGGAGTATACATACGCTTAACTGT	57.044	37.500	5.50	0.00	38.28	3.55
841	903	8.644318	AAAAGGAGTATACATACGCTTAACTG	57.356	34.615	5.50	0.00	38.28	3.16
847	909	9.477484	CTGATTAAAAAGGAGTATACATACGCT	57.523	33.333	5.50	0.00	38.28	5.07
848	910	8.221766	GCTGATTAAAAAGGAGTATACATACGC	58.778	37.037	5.50	0.00	38.28	4.42
849	911	9.256477	TGCTGATTAAAAAGGAGTATACATACG	57.744	33.333	5.50	0.00	38.28	3.06
854	922	9.736023	CCAATTGCTGATTAAAAAGGAGTATAC	57.264	33.333	0.00	0.00	0.00	1.47
871	939	3.547054	ATACAAATGGCCCAATTGCTG	57.453	42.857	11.48	0.00	28.34	4.41
895	963	9.905713	TCAATTCCTTTTTCAGCATATACTACT	57.094	29.630	0.00	0.00	0.00	2.57
897	965	9.905713	ACTCAATTCCTTTTTCAGCATATACTA	57.094	29.630	0.00	0.00	0.00	1.82
1795	1863	1.080025	CGACACCGTCTTCTTCCCC	60.080	63.158	0.00	0.00	0.00	4.81
1916	1984	1.766461	CCTCCGCCTTCCCCTACAT	60.766	63.158	0.00	0.00	0.00	2.29
2451	2525	4.424867	ATACCCCAGTCCCCGCCA	62.425	66.667	0.00	0.00	0.00	5.69
2605	2699	3.256879	ACAAGCGAAGAGAGTGAGATTGA	59.743	43.478	0.00	0.00	33.17	2.57
2701	2812	2.747686	GGCACGGGAGAAACCTCA	59.252	61.111	0.00	0.00	38.98	3.86
2727	2838	4.349503	AATGGAGGCAGCGCACCA	62.350	61.111	20.11	15.38	39.67	4.17
2728	2839	3.818787	CAATGGAGGCAGCGCACC	61.819	66.667	11.47	11.36	0.00	5.01
2729	2840	3.044059	GACAATGGAGGCAGCGCAC	62.044	63.158	11.47	0.00	0.00	5.34
2730	2841	2.747460	GACAATGGAGGCAGCGCA	60.747	61.111	11.47	0.00	0.00	6.09
2731	2842	3.512516	GGACAATGGAGGCAGCGC	61.513	66.667	0.00	0.00	0.00	5.92
2733	2844	2.825836	CGGGACAATGGAGGCAGC	60.826	66.667	0.00	0.00	0.00	5.25
2734	2845	1.450312	GACGGGACAATGGAGGCAG	60.450	63.158	0.00	0.00	0.00	4.85
2736	2847	2.511600	CGACGGGACAATGGAGGC	60.512	66.667	0.00	0.00	0.00	4.70
2737	2848	1.672854	TAGCGACGGGACAATGGAGG	61.673	60.000	0.00	0.00	0.00	4.30
2738	2849	0.174845	TTAGCGACGGGACAATGGAG	59.825	55.000	0.00	0.00	0.00	3.86
2739	2850	0.828022	ATTAGCGACGGGACAATGGA	59.172	50.000	0.00	0.00	0.00	3.41
2740	2851	1.217882	GATTAGCGACGGGACAATGG	58.782	55.000	0.00	0.00	0.00	3.16
2741	2852	1.934589	TGATTAGCGACGGGACAATG	58.065	50.000	0.00	0.00	0.00	2.82
2742	2853	2.093658	ACTTGATTAGCGACGGGACAAT	60.094	45.455	0.00	0.00	0.00	2.71
2743	2854	1.274167	ACTTGATTAGCGACGGGACAA	59.726	47.619	0.00	0.00	0.00	3.18
2806	2925	5.692115	AATAAATAGGCTTTTTGGTGGGG	57.308	39.130	12.40	0.00	0.00	4.96
2896	3022	1.202722	TGAAGAACCTCCCACGTTTCC	60.203	52.381	0.00	0.00	0.00	3.13
3009	3135	4.154918	CCTTGGAGATGCTCTAACACAAAC	59.845	45.833	0.00	0.00	28.50	2.93
3031	3157	3.270092	GCTAGTTTAGCGCGGCCC	61.270	66.667	8.83	0.00	42.62	5.80
3074	3200	1.272784	CTATACCGATTGCGCGCGAA	61.273	55.000	37.18	24.32	35.83	4.70
3075	3201	1.728074	CTATACCGATTGCGCGCGA	60.728	57.895	37.18	25.63	35.83	5.87
3120	3248	3.777925	CTACATATGCCGCGCGCC	61.778	66.667	27.36	16.11	36.24	6.53
3147	3275	2.098298	CGATTGCGTTTCGGCCAG	59.902	61.111	2.24	0.00	33.05	4.85
3214	3342	1.472376	GGATGGAAGTTGGAGAGCGAG	60.472	57.143	0.00	0.00	0.00	5.03
3223	3351	1.686115	GGTGGATGGGGATGGAAGTTG	60.686	57.143	0.00	0.00	0.00	3.16
3228	3356	2.772191	CGGGTGGATGGGGATGGA	60.772	66.667	0.00	0.00	0.00	3.41
3407	3538	1.786579	GCATTTTGTCGAACACCTTGC	59.213	47.619	0.00	0.00	0.00	4.01
3420	3551	8.796475	AGCAATACATACCTTATAGGCATTTTG	58.204	33.333	0.00	0.00	39.63	2.44
3425	3556	6.680148	TGAGCAATACATACCTTATAGGCA	57.320	37.500	0.00	0.00	39.63	4.75
3431	3562	8.892723	CATGAAGTTTGAGCAATACATACCTTA	58.107	33.333	0.00	0.00	0.00	2.69

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.