Multiple sequence alignment - TraesCS2B01G413800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G413800 chr2B 100.000 3051 0 0 1 3051 590917668 590920718 0.000000e+00 5635.0
1 TraesCS2B01G413800 chr2B 94.190 654 33 3 2399 3051 451530001 451529352 0.000000e+00 992.0
2 TraesCS2B01G413800 chr2B 93.656 662 37 2 2391 3051 476716180 476716837 0.000000e+00 985.0
3 TraesCS2B01G413800 chr2D 89.050 2484 121 48 1 2398 502928633 502931051 0.000000e+00 2940.0
4 TraesCS2B01G413800 chr2A 87.092 1379 82 36 197 1551 648340653 648341959 0.000000e+00 1472.0
5 TraesCS2B01G413800 chr2A 92.495 533 19 5 1887 2398 648341951 648342483 0.000000e+00 743.0
6 TraesCS2B01G413800 chr5A 85.606 660 60 11 2399 3051 546833691 546833060 0.000000e+00 660.0
7 TraesCS2B01G413800 chr6B 78.159 641 93 29 1188 1802 479299714 479300333 6.220000e-97 364.0
8 TraesCS2B01G413800 chr6D 78.086 648 87 36 1188 1802 341117433 341116808 2.890000e-95 359.0
9 TraesCS2B01G413800 chr6A 77.064 654 91 33 1188 1803 481083075 481082443 3.790000e-84 322.0
10 TraesCS2B01G413800 chr7A 78.244 501 77 25 2399 2890 556134180 556134657 2.980000e-75 292.0
11 TraesCS2B01G413800 chr5B 78.156 499 81 23 2399 2890 448594426 448593949 2.980000e-75 292.0
12 TraesCS2B01G413800 chr1A 78.244 501 77 25 2399 2890 507992217 507991740 2.980000e-75 292.0
13 TraesCS2B01G413800 chr4A 78.244 501 75 27 2400 2890 3260753 3260277 1.070000e-74 291.0
14 TraesCS2B01G413800 chr7D 79.050 463 59 24 2401 2844 373174883 373175326 1.790000e-72 283.0
15 TraesCS2B01G413800 chr7D 78.742 461 59 24 2392 2844 12004811 12005240 3.880000e-69 272.0
16 TraesCS2B01G413800 chr7D 95.745 47 1 1 86 131 106921331 106921377 1.170000e-09 75.0
17 TraesCS2B01G413800 chr7D 92.000 50 1 3 84 130 106925257 106925306 1.960000e-07 67.6
18 TraesCS2B01G413800 chr5D 78.970 466 60 22 2391 2844 69329288 69329727 1.790000e-72 283.0
19 TraesCS2B01G413800 chr5D 77.333 450 70 23 2392 2836 520983491 520983913 1.410000e-58 237.0
20 TraesCS2B01G413800 chr3D 78.492 451 63 25 2392 2836 520182420 520182842 6.490000e-67 265.0
21 TraesCS2B01G413800 chr3D 76.667 510 77 31 2392 2890 584748186 584748664 8.450000e-61 244.0
22 TraesCS2B01G413800 chr3D 81.818 110 17 3 174 282 422738123 422738230 4.190000e-14 89.8
23 TraesCS2B01G413800 chr3B 78.366 453 63 24 2400 2844 821047249 821047674 8.390000e-66 261.0
24 TraesCS2B01G413800 chr3B 80.909 110 18 3 174 282 550989419 550989526 1.950000e-12 84.2
25 TraesCS2B01G413800 chr3A 76.667 450 74 21 2400 2844 9968839 9968416 1.420000e-53 220.0
26 TraesCS2B01G413800 chr3A 84.810 79 10 2 174 251 566132462 566132385 9.070000e-11 78.7
27 TraesCS2B01G413800 chr7B 95.556 45 2 0 86 130 65664540 65664584 4.220000e-09 73.1
28 TraesCS2B01G413800 chr7B 94.872 39 2 0 94 132 184170296 184170258 9.130000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G413800 chr2B 590917668 590920718 3050 False 5635.0 5635 100.0000 1 3051 1 chr2B.!!$F2 3050
1 TraesCS2B01G413800 chr2B 451529352 451530001 649 True 992.0 992 94.1900 2399 3051 1 chr2B.!!$R1 652
2 TraesCS2B01G413800 chr2B 476716180 476716837 657 False 985.0 985 93.6560 2391 3051 1 chr2B.!!$F1 660
3 TraesCS2B01G413800 chr2D 502928633 502931051 2418 False 2940.0 2940 89.0500 1 2398 1 chr2D.!!$F1 2397
4 TraesCS2B01G413800 chr2A 648340653 648342483 1830 False 1107.5 1472 89.7935 197 2398 2 chr2A.!!$F1 2201
5 TraesCS2B01G413800 chr5A 546833060 546833691 631 True 660.0 660 85.6060 2399 3051 1 chr5A.!!$R1 652
6 TraesCS2B01G413800 chr6B 479299714 479300333 619 False 364.0 364 78.1590 1188 1802 1 chr6B.!!$F1 614
7 TraesCS2B01G413800 chr6D 341116808 341117433 625 True 359.0 359 78.0860 1188 1802 1 chr6D.!!$R1 614
8 TraesCS2B01G413800 chr6A 481082443 481083075 632 True 322.0 322 77.0640 1188 1803 1 chr6A.!!$R1 615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
236 245 0.752743 CGGGTTGCCCACATGATGAT 60.753 55.0 0.0 0.0 45.83 2.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2117 2260 0.802494 ATGTACCGAAAAGCCAAGCG 59.198 50.0 0.0 0.0 0.0 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.479993 GGCCCAGCAGAGCACGAT 62.480 66.667 0.00 0.00 0.00 3.73
36 44 3.535561 CAGAGCACGATTGGGTCTAAAT 58.464 45.455 0.00 0.00 40.86 1.40
50 58 7.324354 TGGGTCTAAATTTTACTAAATCGGC 57.676 36.000 0.00 0.00 32.85 5.54
52 60 7.148205 TGGGTCTAAATTTTACTAAATCGGCAC 60.148 37.037 0.00 0.00 32.85 5.01
59 67 9.836076 AAATTTTACTAAATCGGCACTAAAGTC 57.164 29.630 0.00 0.00 32.85 3.01
101 109 8.258007 ACAAAATAAGACTCACTTCGATCCATA 58.742 33.333 0.00 0.00 39.72 2.74
102 110 9.265901 CAAAATAAGACTCACTTCGATCCATAT 57.734 33.333 0.00 0.00 39.72 1.78
103 111 9.838339 AAAATAAGACTCACTTCGATCCATATT 57.162 29.630 0.00 0.00 39.72 1.28
108 116 8.824159 AGACTCACTTCGATCCATATTAATTG 57.176 34.615 0.00 0.00 0.00 2.32
109 117 8.642432 AGACTCACTTCGATCCATATTAATTGA 58.358 33.333 0.00 0.00 0.00 2.57
110 118 8.594881 ACTCACTTCGATCCATATTAATTGAC 57.405 34.615 0.00 0.00 0.00 3.18
111 119 7.382488 ACTCACTTCGATCCATATTAATTGACG 59.618 37.037 0.00 0.00 0.00 4.35
112 120 7.207383 TCACTTCGATCCATATTAATTGACGT 58.793 34.615 0.00 0.00 0.00 4.34
113 121 7.709182 TCACTTCGATCCATATTAATTGACGTT 59.291 33.333 0.00 0.00 0.00 3.99
114 122 7.793888 CACTTCGATCCATATTAATTGACGTTG 59.206 37.037 0.00 0.00 0.00 4.10
115 123 7.494625 ACTTCGATCCATATTAATTGACGTTGT 59.505 33.333 0.00 0.00 0.00 3.32
136 144 5.940595 TGTTTTAGTACAACTTTGTTGCGT 58.059 33.333 9.96 0.00 42.35 5.24
138 146 6.523893 TGTTTTAGTACAACTTTGTTGCGTTC 59.476 34.615 9.96 0.26 42.35 3.95
149 157 4.955925 TTGTTGCGTTCATTAGTATGGG 57.044 40.909 0.00 0.00 32.40 4.00
154 162 4.631131 TGCGTTCATTAGTATGGGATCAG 58.369 43.478 0.00 0.00 32.40 2.90
156 164 4.449068 GCGTTCATTAGTATGGGATCAGTG 59.551 45.833 0.00 0.00 32.40 3.66
165 174 5.094387 AGTATGGGATCAGTGGGGTATTAG 58.906 45.833 0.00 0.00 0.00 1.73
168 177 4.116113 TGGGATCAGTGGGGTATTAGTTT 58.884 43.478 0.00 0.00 0.00 2.66
172 181 6.056236 GGATCAGTGGGGTATTAGTTTTCTC 58.944 44.000 0.00 0.00 0.00 2.87
179 188 7.043565 GTGGGGTATTAGTTTTCTCGATACAA 58.956 38.462 0.00 0.00 34.03 2.41
191 200 4.806330 TCTCGATACAATTAATCTCGGCC 58.194 43.478 0.00 0.00 0.00 6.13
193 202 5.047306 TCTCGATACAATTAATCTCGGCCAT 60.047 40.000 2.24 0.00 0.00 4.40
199 208 8.862325 ATACAATTAATCTCGGCCATCAAATA 57.138 30.769 2.24 0.00 0.00 1.40
208 217 4.277476 TCGGCCATCAAATAAGGTCAATT 58.723 39.130 2.24 0.00 0.00 2.32
215 224 6.747280 CCATCAAATAAGGTCAATTCAACGAC 59.253 38.462 0.00 0.00 0.00 4.34
218 227 5.779806 AATAAGGTCAATTCAACGACTCG 57.220 39.130 0.00 0.00 32.57 4.18
219 228 2.080286 AGGTCAATTCAACGACTCGG 57.920 50.000 2.98 0.00 32.57 4.63
224 233 0.872388 AATTCAACGACTCGGGTTGC 59.128 50.000 1.39 0.00 43.37 4.17
230 239 2.351276 GACTCGGGTTGCCCACAT 59.649 61.111 4.96 0.00 45.83 3.21
236 245 0.752743 CGGGTTGCCCACATGATGAT 60.753 55.000 0.00 0.00 45.83 2.45
247 256 5.422145 CCCACATGATGATCGCTCAATATA 58.578 41.667 0.00 0.00 34.37 0.86
248 257 6.053650 CCCACATGATGATCGCTCAATATAT 58.946 40.000 0.00 0.00 34.37 0.86
252 261 9.836076 CACATGATGATCGCTCAATATATTTTT 57.164 29.630 0.00 0.00 34.37 1.94
262 271 6.129273 CGCTCAATATATTTTTGCATGCAGTC 60.129 38.462 21.50 1.73 0.00 3.51
266 275 9.036671 TCAATATATTTTTGCATGCAGTCAATG 57.963 29.630 21.50 11.88 0.00 2.82
272 284 3.497297 TGCATGCAGTCAATGTCATTC 57.503 42.857 18.46 0.00 0.00 2.67
277 289 5.350365 GCATGCAGTCAATGTCATTCAAAAT 59.650 36.000 14.21 0.00 0.00 1.82
376 393 5.758296 ACCTAATATCCGTGTGCAACTAATG 59.242 40.000 0.00 0.00 38.04 1.90
381 398 3.581755 TCCGTGTGCAACTAATGTACTC 58.418 45.455 0.00 0.00 44.16 2.59
414 431 6.464895 TTTTTAGAATGCCAGCGATTTTTG 57.535 33.333 0.00 0.00 0.00 2.44
415 432 4.782019 TTAGAATGCCAGCGATTTTTGT 57.218 36.364 0.00 0.00 0.00 2.83
536 591 7.441157 TGTGCAACTAATATACACTGCCTAATC 59.559 37.037 0.00 0.00 38.04 1.75
623 678 2.159184 TGCATCTAGTCGGAAAGAGCAG 60.159 50.000 9.55 1.11 0.00 4.24
975 1037 3.475774 CAACCGGACGCACGCTAC 61.476 66.667 9.46 0.00 0.00 3.58
979 1041 4.164664 CGGACGCACGCTACGGTA 62.165 66.667 0.00 0.00 34.00 4.02
1047 1109 4.755123 GCTCCTTCGCTTTTATATAAGCCA 59.245 41.667 18.56 6.71 46.06 4.75
1048 1110 5.334182 GCTCCTTCGCTTTTATATAAGCCAC 60.334 44.000 18.56 1.81 46.06 5.01
1135 1200 2.146061 CCTCTCATCCTCCCTGCCC 61.146 68.421 0.00 0.00 0.00 5.36
1823 1956 2.106683 CCGATTCGGTCCAGGCAAC 61.107 63.158 17.08 0.00 42.73 4.17
1824 1957 2.521958 CCGATTCGGTCCAGGCAACT 62.522 60.000 17.08 0.00 46.60 3.16
2024 2163 1.649664 CGGAGCTGTGGATCTTTCTG 58.350 55.000 0.00 0.00 0.00 3.02
2028 2167 1.093159 GCTGTGGATCTTTCTGCTGG 58.907 55.000 0.00 0.00 0.00 4.85
2071 2213 1.766069 GTTCCGCGTGCAAAATTTCT 58.234 45.000 4.92 0.00 0.00 2.52
2096 2239 2.079925 CTTTGCTCCTTCTCTTTCCCG 58.920 52.381 0.00 0.00 0.00 5.14
2097 2240 1.056660 TTGCTCCTTCTCTTTCCCGT 58.943 50.000 0.00 0.00 0.00 5.28
2098 2241 0.321671 TGCTCCTTCTCTTTCCCGTG 59.678 55.000 0.00 0.00 0.00 4.94
2099 2242 0.321996 GCTCCTTCTCTTTCCCGTGT 59.678 55.000 0.00 0.00 0.00 4.49
2101 2244 2.417719 CTCCTTCTCTTTCCCGTGTTG 58.582 52.381 0.00 0.00 0.00 3.33
2103 2246 1.202770 CCTTCTCTTTCCCGTGTTGGT 60.203 52.381 0.00 0.00 35.15 3.67
2104 2247 2.143925 CTTCTCTTTCCCGTGTTGGTC 58.856 52.381 0.00 0.00 35.15 4.02
2105 2248 1.124780 TCTCTTTCCCGTGTTGGTCA 58.875 50.000 0.00 0.00 35.15 4.02
2106 2249 1.070134 TCTCTTTCCCGTGTTGGTCAG 59.930 52.381 0.00 0.00 35.15 3.51
2107 2250 0.107831 TCTTTCCCGTGTTGGTCAGG 59.892 55.000 0.00 0.00 35.15 3.86
2108 2251 1.515521 CTTTCCCGTGTTGGTCAGGC 61.516 60.000 0.00 0.00 35.15 4.85
2109 2252 2.969300 TTTCCCGTGTTGGTCAGGCC 62.969 60.000 0.00 0.00 35.15 5.19
2111 2254 4.619227 CCGTGTTGGTCAGGCCGT 62.619 66.667 0.00 0.00 41.21 5.68
2112 2255 2.590575 CGTGTTGGTCAGGCCGTT 60.591 61.111 0.00 0.00 41.21 4.44
2113 2256 2.604174 CGTGTTGGTCAGGCCGTTC 61.604 63.158 0.00 0.00 41.21 3.95
2114 2257 1.525077 GTGTTGGTCAGGCCGTTCA 60.525 57.895 0.00 0.00 41.21 3.18
2115 2258 1.227823 TGTTGGTCAGGCCGTTCAG 60.228 57.895 0.00 0.00 41.21 3.02
2116 2259 2.281484 TTGGTCAGGCCGTTCAGC 60.281 61.111 0.00 0.00 41.21 4.26
2448 2631 2.354328 TGTAGGGGTGGGAACAGATTT 58.646 47.619 0.00 0.00 44.46 2.17
2480 2663 2.159179 AGAAACCCCACAAAACTGCT 57.841 45.000 0.00 0.00 0.00 4.24
2498 2681 1.943507 GCTCCTCCAACTTGTCTGCTC 60.944 57.143 0.00 0.00 0.00 4.26
2517 2700 9.677567 GTCTGCTCTAACAAAATCATACAAAAA 57.322 29.630 0.00 0.00 0.00 1.94
2523 2707 8.919145 TCTAACAAAATCATACAAAAACACCCT 58.081 29.630 0.00 0.00 0.00 4.34
2526 2710 7.209475 ACAAAATCATACAAAAACACCCTGAG 58.791 34.615 0.00 0.00 0.00 3.35
2615 2800 3.256383 CCTTCTTCCACATTTGCACATGA 59.744 43.478 19.41 0.00 0.00 3.07
2617 2802 2.229543 TCTTCCACATTTGCACATGAGC 59.770 45.455 19.41 8.32 0.00 4.26
2672 2860 1.536676 CCCCGATGCAAACCCCTAT 59.463 57.895 0.00 0.00 0.00 2.57
2715 2903 0.701147 CCTCCTCCTTGCCTTTCCTT 59.299 55.000 0.00 0.00 0.00 3.36
2735 2923 0.538977 TGTTCCTCCTCCTCGACGTT 60.539 55.000 0.00 0.00 0.00 3.99
2859 3047 1.742308 AAGCTTCCCCTGTTCCTACA 58.258 50.000 0.00 0.00 0.00 2.74
2873 3061 2.262637 TCCTACATTCCCCTGTTCGTT 58.737 47.619 0.00 0.00 0.00 3.85
2890 3078 1.271163 CGTTTGCTTCCCCTGTTCCTA 60.271 52.381 0.00 0.00 0.00 2.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.087892 GCTCTGCTGGGCCGAAGA 62.088 66.667 3.65 2.27 0.00 2.87
10 11 2.110967 CCAATCGTGCTCTGCTGGG 61.111 63.158 0.00 0.00 0.00 4.45
15 16 2.672961 TTAGACCCAATCGTGCTCTG 57.327 50.000 0.00 0.00 0.00 3.35
25 26 7.393796 TGCCGATTTAGTAAAATTTAGACCCAA 59.606 33.333 0.00 0.00 35.41 4.12
36 44 8.500773 CAAGACTTTAGTGCCGATTTAGTAAAA 58.499 33.333 0.00 0.00 0.00 1.52
84 92 8.704234 GTCAATTAATATGGATCGAAGTGAGTC 58.296 37.037 0.00 0.00 0.00 3.36
86 94 7.382488 ACGTCAATTAATATGGATCGAAGTGAG 59.618 37.037 0.00 0.00 0.00 3.51
112 120 6.380190 ACGCAACAAAGTTGTACTAAAACAA 58.620 32.000 11.09 0.00 41.31 2.83
113 121 5.940595 ACGCAACAAAGTTGTACTAAAACA 58.059 33.333 11.09 0.00 41.31 2.83
114 122 6.523893 TGAACGCAACAAAGTTGTACTAAAAC 59.476 34.615 11.09 0.00 41.31 2.43
115 123 6.609533 TGAACGCAACAAAGTTGTACTAAAA 58.390 32.000 11.09 0.00 41.31 1.52
131 139 5.029807 TGATCCCATACTAATGAACGCAA 57.970 39.130 0.00 0.00 34.84 4.85
133 141 4.449068 CACTGATCCCATACTAATGAACGC 59.551 45.833 0.00 0.00 34.84 4.84
136 144 4.350816 CCCCACTGATCCCATACTAATGAA 59.649 45.833 0.00 0.00 34.84 2.57
138 146 3.652869 ACCCCACTGATCCCATACTAATG 59.347 47.826 0.00 0.00 0.00 1.90
149 157 5.753921 CGAGAAAACTAATACCCCACTGATC 59.246 44.000 0.00 0.00 0.00 2.92
154 162 6.576185 TGTATCGAGAAAACTAATACCCCAC 58.424 40.000 0.00 0.00 0.00 4.61
156 164 8.672823 AATTGTATCGAGAAAACTAATACCCC 57.327 34.615 0.00 0.00 0.00 4.95
165 174 7.064064 GCCGAGATTAATTGTATCGAGAAAAC 58.936 38.462 10.14 0.00 35.47 2.43
168 177 5.221362 TGGCCGAGATTAATTGTATCGAGAA 60.221 40.000 10.14 0.00 35.47 2.87
172 181 4.929211 TGATGGCCGAGATTAATTGTATCG 59.071 41.667 0.00 3.59 0.00 2.92
179 188 6.306987 ACCTTATTTGATGGCCGAGATTAAT 58.693 36.000 0.00 0.00 0.00 1.40
188 197 5.596836 TGAATTGACCTTATTTGATGGCC 57.403 39.130 0.00 0.00 0.00 5.36
191 200 7.530010 AGTCGTTGAATTGACCTTATTTGATG 58.470 34.615 0.00 0.00 35.71 3.07
193 202 6.128661 CGAGTCGTTGAATTGACCTTATTTGA 60.129 38.462 3.82 0.00 35.71 2.69
199 208 2.413837 CCGAGTCGTTGAATTGACCTT 58.586 47.619 12.31 0.00 35.71 3.50
208 217 2.029964 GGCAACCCGAGTCGTTGA 59.970 61.111 17.29 0.00 42.63 3.18
224 233 1.957668 TTGAGCGATCATCATGTGGG 58.042 50.000 3.25 0.00 0.00 4.61
230 239 7.873910 TGCAAAAATATATTGAGCGATCATCA 58.126 30.769 3.25 0.00 0.00 3.07
236 245 5.829829 TGCATGCAAAAATATATTGAGCGA 58.170 33.333 20.30 0.00 0.00 4.93
247 256 4.633175 TGACATTGACTGCATGCAAAAAT 58.367 34.783 22.88 17.32 0.00 1.82
248 257 4.056092 TGACATTGACTGCATGCAAAAA 57.944 36.364 22.88 15.83 0.00 1.94
252 261 2.820787 TGAATGACATTGACTGCATGCA 59.179 40.909 21.29 21.29 29.66 3.96
262 271 8.426881 TGGCATTGATATTTTGAATGACATTG 57.573 30.769 5.14 0.00 39.64 2.82
266 275 6.751425 TCGTTGGCATTGATATTTTGAATGAC 59.249 34.615 0.00 0.00 35.91 3.06
348 365 1.140252 GCACACGGATATTAGGTGGGT 59.860 52.381 6.05 0.00 37.41 4.51
362 379 2.671396 GGGAGTACATTAGTTGCACACG 59.329 50.000 0.00 0.00 0.00 4.49
395 412 5.182487 TCTACAAAAATCGCTGGCATTCTA 58.818 37.500 0.00 0.00 0.00 2.10
396 413 4.009675 TCTACAAAAATCGCTGGCATTCT 58.990 39.130 0.00 0.00 0.00 2.40
441 461 6.130298 TCGCCGACATTGATATTTTGAATT 57.870 33.333 0.00 0.00 0.00 2.17
485 505 9.485591 CACGGATATTTTGGATATTATTTACGC 57.514 33.333 0.00 0.00 0.00 4.42
508 540 4.260212 GGCAGTGTATATTAGTTGCACACG 60.260 45.833 0.00 0.00 43.27 4.49
576 631 7.380423 AGGGTGCATAGTAGAAAACAGATAT 57.620 36.000 0.00 0.00 0.00 1.63
577 632 6.808321 AGGGTGCATAGTAGAAAACAGATA 57.192 37.500 0.00 0.00 0.00 1.98
623 678 3.262420 AGATGCACACGTTGATCCTTAC 58.738 45.455 0.00 0.00 0.00 2.34
654 710 1.077068 CCAACCCCGGTGCATGTAT 60.077 57.895 0.00 0.00 0.00 2.29
888 950 0.970937 GATGACCGACTCCCAGTCCA 60.971 60.000 0.00 0.00 42.12 4.02
1172 1237 1.293498 GTCGCTTGCCAAGGAGAGA 59.707 57.895 6.57 0.00 0.00 3.10
1173 1238 1.004560 TGTCGCTTGCCAAGGAGAG 60.005 57.895 6.57 0.00 0.00 3.20
1904 2039 2.792947 CGCCCTATGTACACGGCCT 61.793 63.158 19.56 0.00 38.19 5.19
1905 2040 2.279918 CGCCCTATGTACACGGCC 60.280 66.667 19.56 0.00 38.19 6.13
2024 2163 6.544038 AACTCAACAAATTTAATTGCCAGC 57.456 33.333 8.75 0.00 33.52 4.85
2028 2167 6.364976 ACGCCTAACTCAACAAATTTAATTGC 59.635 34.615 8.75 0.00 33.52 3.56
2058 2200 3.369546 AAGGGACAGAAATTTTGCACG 57.630 42.857 0.00 0.00 0.00 5.34
2071 2213 1.734655 AGAGAAGGAGCAAAGGGACA 58.265 50.000 0.00 0.00 0.00 4.02
2096 2239 1.507141 CTGAACGGCCTGACCAACAC 61.507 60.000 0.00 0.00 39.03 3.32
2097 2240 1.227823 CTGAACGGCCTGACCAACA 60.228 57.895 0.00 0.00 39.03 3.33
2098 2241 2.617274 GCTGAACGGCCTGACCAAC 61.617 63.158 0.00 0.00 39.03 3.77
2099 2242 2.281484 GCTGAACGGCCTGACCAA 60.281 61.111 0.00 0.00 39.03 3.67
2117 2260 0.802494 ATGTACCGAAAAGCCAAGCG 59.198 50.000 0.00 0.00 0.00 4.68
2118 2261 4.814771 AGTATATGTACCGAAAAGCCAAGC 59.185 41.667 0.00 0.00 0.00 4.01
2119 2262 7.208080 ACTAGTATATGTACCGAAAAGCCAAG 58.792 38.462 0.00 0.00 0.00 3.61
2120 2263 7.116075 ACTAGTATATGTACCGAAAAGCCAA 57.884 36.000 0.00 0.00 0.00 4.52
2121 2264 6.720112 ACTAGTATATGTACCGAAAAGCCA 57.280 37.500 0.00 0.00 0.00 4.75
2122 2265 7.880105 ACTACTAGTATATGTACCGAAAAGCC 58.120 38.462 2.33 0.00 0.00 4.35
2123 2266 9.818796 GTACTACTAGTATATGTACCGAAAAGC 57.181 37.037 15.27 0.00 32.65 3.51
2151 2318 7.254137 GGAAGTTGATGAAGCCTTTCTAAATC 58.746 38.462 0.00 0.00 34.31 2.17
2448 2631 8.763984 TTGTGGGGTTTCTTAGTTTTTGTATA 57.236 30.769 0.00 0.00 0.00 1.47
2462 2645 1.068588 GGAGCAGTTTTGTGGGGTTTC 59.931 52.381 0.00 0.00 0.00 2.78
2466 2649 0.895559 GGAGGAGCAGTTTTGTGGGG 60.896 60.000 0.00 0.00 0.00 4.96
2480 2663 1.722034 AGAGCAGACAAGTTGGAGGA 58.278 50.000 7.96 0.00 0.00 3.71
2498 2681 8.977505 CAGGGTGTTTTTGTATGATTTTGTTAG 58.022 33.333 0.00 0.00 0.00 2.34
2517 2700 2.111878 GTGTGCAGCTCAGGGTGT 59.888 61.111 0.00 0.00 42.33 4.16
2617 2802 6.402875 GGGTTACTATAAAACAGAAGCAACGG 60.403 42.308 0.00 0.00 0.00 4.44
2672 2860 1.062505 AGGGGAAAGGCAAGGTTTTGA 60.063 47.619 0.00 0.00 36.36 2.69
2715 2903 0.538977 ACGTCGAGGAGGAGGAACAA 60.539 55.000 12.85 0.00 0.00 2.83
2859 3047 1.886542 GAAGCAAACGAACAGGGGAAT 59.113 47.619 0.00 0.00 0.00 3.01
2873 3061 1.992557 ACATAGGAACAGGGGAAGCAA 59.007 47.619 0.00 0.00 0.00 3.91
2890 3078 1.913419 ACCTAACCATGGGACGAACAT 59.087 47.619 18.09 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.