Multiple sequence alignment - TraesCS2B01G413200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G413200 chr2B 100.000 2522 0 0 1 2522 588927308 588929829 0.000000e+00 4658.0
1 TraesCS2B01G413200 chr2A 86.807 2092 138 55 1 1989 646844000 646846056 0.000000e+00 2207.0
2 TraesCS2B01G413200 chr2D 92.009 1339 74 16 997 2309 500403336 500402005 0.000000e+00 1849.0
3 TraesCS2B01G413200 chr2D 89.133 957 57 23 1 940 500404374 500403448 0.000000e+00 1147.0
4 TraesCS2B01G413200 chr7D 85.047 214 27 4 2313 2521 520395160 520395373 1.970000e-51 213.0
5 TraesCS2B01G413200 chr5D 78.873 213 34 8 2313 2522 326905328 326905532 1.570000e-27 134.0
6 TraesCS2B01G413200 chr5B 77.273 220 35 8 2313 2522 379598488 379598702 5.700000e-22 115.0
7 TraesCS2B01G413200 chr6B 88.732 71 4 4 2447 2516 313173614 313173681 1.610000e-12 84.2
8 TraesCS2B01G413200 chr6A 86.842 76 8 2 2447 2522 355383589 355383516 1.610000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G413200 chr2B 588927308 588929829 2521 False 4658 4658 100.000 1 2522 1 chr2B.!!$F1 2521
1 TraesCS2B01G413200 chr2A 646844000 646846056 2056 False 2207 2207 86.807 1 1989 1 chr2A.!!$F1 1988
2 TraesCS2B01G413200 chr2D 500402005 500404374 2369 True 1498 1849 90.571 1 2309 2 chr2D.!!$R1 2308

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
284 320 0.105039 CATAAGGGTGAGGGACGAGC 59.895 60.0 0.0 0.0 0.0 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1702 1888 0.105408 AAACACGGACGGTACTGCTT 59.895 50.0 0.23 0.0 0.0 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 99 9.888878 AAAGCGGTTAACTAGATCTTTTTAAAC 57.111 29.630 0.00 7.09 0.00 2.01
274 310 4.342862 CCATAGAGTGGTCATAAGGGTG 57.657 50.000 0.00 0.00 43.44 4.61
275 311 3.967326 CCATAGAGTGGTCATAAGGGTGA 59.033 47.826 0.00 0.00 43.44 4.02
276 312 4.039730 CCATAGAGTGGTCATAAGGGTGAG 59.960 50.000 0.00 0.00 43.44 3.51
277 313 2.472029 AGAGTGGTCATAAGGGTGAGG 58.528 52.381 0.00 0.00 0.00 3.86
278 314 1.486726 GAGTGGTCATAAGGGTGAGGG 59.513 57.143 0.00 0.00 0.00 4.30
279 315 1.080498 AGTGGTCATAAGGGTGAGGGA 59.920 52.381 0.00 0.00 0.00 4.20
280 316 1.209747 GTGGTCATAAGGGTGAGGGAC 59.790 57.143 0.00 0.00 0.00 4.46
281 317 0.464452 GGTCATAAGGGTGAGGGACG 59.536 60.000 0.00 0.00 0.00 4.79
282 318 1.481871 GTCATAAGGGTGAGGGACGA 58.518 55.000 0.00 0.00 0.00 4.20
283 319 1.409427 GTCATAAGGGTGAGGGACGAG 59.591 57.143 0.00 0.00 0.00 4.18
284 320 0.105039 CATAAGGGTGAGGGACGAGC 59.895 60.000 0.00 0.00 0.00 5.03
285 321 1.049289 ATAAGGGTGAGGGACGAGCC 61.049 60.000 0.00 0.00 0.00 4.70
296 353 0.674534 GGACGAGCCGAAGACCATAT 59.325 55.000 1.50 0.00 0.00 1.78
326 383 4.734695 GCTCGCAAATTAAATAAGCTGCCT 60.735 41.667 0.00 0.00 0.00 4.75
344 401 2.986479 GCCTAAACATGTGAAAAAGGCG 59.014 45.455 16.57 0.00 38.74 5.52
354 411 2.100087 GTGAAAAAGGCGGAAGGAAACA 59.900 45.455 0.00 0.00 0.00 2.83
374 431 2.182030 GTCCCTGACGAAGCTCGG 59.818 66.667 9.75 0.00 45.59 4.63
509 575 3.862063 CTGTGCAGCACGCGGTTTC 62.862 63.158 20.67 0.00 46.97 2.78
641 713 0.895559 TTGGCGTGCTGAGAGAGAGA 60.896 55.000 0.00 0.00 0.00 3.10
642 714 1.311651 TGGCGTGCTGAGAGAGAGAG 61.312 60.000 0.00 0.00 0.00 3.20
650 722 2.092968 GCTGAGAGAGAGAGAGGACAGA 60.093 54.545 0.00 0.00 0.00 3.41
757 840 0.309612 GACGTTGCCCACACGAAATT 59.690 50.000 0.00 0.00 0.00 1.82
837 921 4.335525 GTCGACGCACACACGCAC 62.336 66.667 0.00 0.00 36.19 5.34
940 1037 0.998727 GCGTTTTGCCTTCTGAAGCG 60.999 55.000 11.93 9.68 37.76 4.68
1098 1255 1.083806 CGCTGGCTTTCGTGCTCATA 61.084 55.000 0.00 0.00 0.00 2.15
1281 1438 1.654226 CGATCGTCGACGTCTAAGAGC 60.654 57.143 34.40 17.81 43.74 4.09
1282 1439 1.326852 GATCGTCGACGTCTAAGAGCA 59.673 52.381 34.40 14.80 40.80 4.26
1283 1440 0.720027 TCGTCGACGTCTAAGAGCAG 59.280 55.000 34.40 5.11 40.80 4.24
1284 1441 0.247735 CGTCGACGTCTAAGAGCAGG 60.248 60.000 29.08 0.00 34.11 4.85
1285 1442 0.099082 GTCGACGTCTAAGAGCAGGG 59.901 60.000 14.70 0.00 0.00 4.45
1290 1447 3.838271 TCTAAGAGCAGGGCGGCG 61.838 66.667 0.51 0.51 39.27 6.46
1429 1604 2.360225 TCGACCGGTGGATCGACA 60.360 61.111 14.63 0.00 42.18 4.35
1540 1718 2.050350 TTCTCCCTCCGTACCTGCG 61.050 63.158 0.00 0.00 0.00 5.18
1580 1765 2.185867 GGCGCGATGGTACTTGGA 59.814 61.111 12.10 0.00 0.00 3.53
1581 1766 1.227556 GGCGCGATGGTACTTGGAT 60.228 57.895 12.10 0.00 0.00 3.41
1582 1767 1.498865 GGCGCGATGGTACTTGGATG 61.499 60.000 12.10 0.00 0.00 3.51
1583 1768 1.498865 GCGCGATGGTACTTGGATGG 61.499 60.000 12.10 0.00 0.00 3.51
1584 1769 0.880278 CGCGATGGTACTTGGATGGG 60.880 60.000 0.00 0.00 0.00 4.00
1596 1781 4.437587 GATGGGTGCAGCAGGCCT 62.438 66.667 19.06 0.00 43.89 5.19
1598 1783 3.350031 ATGGGTGCAGCAGGCCTAC 62.350 63.158 19.06 0.00 43.89 3.18
1601 1786 4.082523 GTGCAGCAGGCCTACCGA 62.083 66.667 3.98 0.00 43.89 4.69
1620 1805 3.567797 GGCTGTTCGCGATCAGGC 61.568 66.667 40.04 40.04 46.48 4.85
1665 1851 2.290832 TGCTAATCAATGGGCACACAGA 60.291 45.455 0.00 0.00 0.00 3.41
1672 1858 4.630111 TCAATGGGCACACAGAAAAATTC 58.370 39.130 0.00 0.00 0.00 2.17
1733 1920 3.368116 CGTCCGTGTTTAGGGAAGAGATT 60.368 47.826 0.00 0.00 42.13 2.40
1756 1944 9.713740 GATTGAATCAGTGATCACAATAAAGAC 57.286 33.333 27.02 15.45 33.18 3.01
1760 1948 5.491070 TCAGTGATCACAATAAAGACTGGG 58.509 41.667 27.02 1.46 0.00 4.45
1762 1950 3.063997 GTGATCACAATAAAGACTGGGCG 59.936 47.826 21.07 0.00 0.00 6.13
1773 1961 2.911484 AGACTGGGCGATTGAGAATTC 58.089 47.619 0.00 0.00 0.00 2.17
1775 1963 0.940126 CTGGGCGATTGAGAATTCGG 59.060 55.000 0.00 0.00 0.00 4.30
1799 1989 2.270257 GCTGGCAATGTGTCCTGCA 61.270 57.895 12.30 0.00 43.87 4.41
1808 1998 0.107643 TGTGTCCTGCATCCGTCAAA 59.892 50.000 0.00 0.00 0.00 2.69
1851 2056 3.325425 TCTGGAATTGTTGGGTACGAAGA 59.675 43.478 0.00 0.00 0.00 2.87
1858 2063 1.593006 GTTGGGTACGAAGATGCATCG 59.407 52.381 20.67 13.65 45.47 3.84
1943 2149 4.581493 TCGACGTGTAACTAATCATCGTC 58.419 43.478 0.00 0.00 41.36 4.20
1949 2155 5.229469 CGTGTAACTAATCATCGTCACCTTC 59.771 44.000 0.00 0.00 31.75 3.46
2020 2226 9.515226 TGTAAGCTGGTGATTAAAGTTAGAAAT 57.485 29.630 0.00 0.00 0.00 2.17
2085 2291 6.008331 AGAATTTTTGGAACCTAGGTACACC 58.992 40.000 16.67 18.53 0.00 4.16
2086 2292 4.792513 TTTTTGGAACCTAGGTACACCA 57.207 40.909 23.05 23.05 38.89 4.17
2094 2300 4.296621 ACCTAGGTACACCAAAATCCAC 57.703 45.455 14.41 0.00 38.89 4.02
2099 2305 4.149598 AGGTACACCAAAATCCACTTTCC 58.850 43.478 0.38 0.00 38.89 3.13
2162 2368 0.451783 GTCCCAATTTGCGAGCGAAT 59.548 50.000 4.79 4.79 0.00 3.34
2164 2370 2.096819 GTCCCAATTTGCGAGCGAATAA 59.903 45.455 10.62 0.00 30.42 1.40
2168 2374 1.286501 ATTTGCGAGCGAATAAGCGA 58.713 45.000 8.67 0.00 43.00 4.93
2183 2389 4.170062 CGACATGCGCCTTGCCTG 62.170 66.667 4.18 0.00 45.60 4.85
2206 2412 1.226859 CGTCGGCGCCTTTGATCTA 60.227 57.895 26.68 0.00 0.00 1.98
2221 2427 3.023832 TGATCTACCTTCAGTGCGATGA 58.976 45.455 0.00 0.00 0.00 2.92
2225 2431 4.933330 TCTACCTTCAGTGCGATGATTAC 58.067 43.478 0.00 0.00 0.00 1.89
2253 2459 0.662970 GCCGAGCGCTAATGAGAGAG 60.663 60.000 11.50 0.00 0.00 3.20
2263 2469 5.734786 GCGCTAATGAGAGAGTTCAGTACAT 60.735 44.000 0.00 0.00 0.00 2.29
2268 2474 4.580868 TGAGAGAGTTCAGTACATCGACT 58.419 43.478 0.00 0.00 0.00 4.18
2272 2478 7.011576 TGAGAGAGTTCAGTACATCGACTATTC 59.988 40.741 0.00 0.00 0.00 1.75
2292 2505 3.270027 TCGACACATGAAGCAAATAGGG 58.730 45.455 0.00 0.00 0.00 3.53
2312 2525 0.873054 CAGCACATGCCATAGCTAGC 59.127 55.000 6.62 6.62 43.38 3.42
2313 2526 0.763652 AGCACATGCCATAGCTAGCT 59.236 50.000 23.12 23.12 43.38 3.32
2314 2527 1.155042 GCACATGCCATAGCTAGCTC 58.845 55.000 23.26 7.43 40.80 4.09
2315 2528 1.805869 CACATGCCATAGCTAGCTCC 58.194 55.000 23.26 8.99 40.80 4.70
2316 2529 1.071228 CACATGCCATAGCTAGCTCCA 59.929 52.381 23.26 14.47 40.80 3.86
2317 2530 1.770658 ACATGCCATAGCTAGCTCCAA 59.229 47.619 23.26 3.87 40.80 3.53
2318 2531 2.149578 CATGCCATAGCTAGCTCCAAC 58.850 52.381 23.26 10.55 40.80 3.77
2319 2532 1.203237 TGCCATAGCTAGCTCCAACA 58.797 50.000 23.26 13.18 40.80 3.33
2320 2533 1.559219 TGCCATAGCTAGCTCCAACAA 59.441 47.619 23.26 2.06 40.80 2.83
2321 2534 2.026356 TGCCATAGCTAGCTCCAACAAA 60.026 45.455 23.26 1.17 40.80 2.83
2322 2535 3.217626 GCCATAGCTAGCTCCAACAAAT 58.782 45.455 23.26 4.03 35.50 2.32
2323 2536 3.004106 GCCATAGCTAGCTCCAACAAATG 59.996 47.826 23.26 16.67 35.50 2.32
2324 2537 4.454678 CCATAGCTAGCTCCAACAAATGA 58.545 43.478 23.26 0.00 0.00 2.57
2325 2538 5.068636 CCATAGCTAGCTCCAACAAATGAT 58.931 41.667 23.26 1.52 0.00 2.45
2326 2539 5.048921 CCATAGCTAGCTCCAACAAATGATG 60.049 44.000 23.26 14.48 0.00 3.07
2327 2540 3.960571 AGCTAGCTCCAACAAATGATGT 58.039 40.909 12.68 0.00 46.82 3.06
2328 2541 5.102953 AGCTAGCTCCAACAAATGATGTA 57.897 39.130 12.68 0.00 42.99 2.29
2329 2542 5.688807 AGCTAGCTCCAACAAATGATGTAT 58.311 37.500 12.68 0.00 42.99 2.29
2330 2543 6.830912 AGCTAGCTCCAACAAATGATGTATA 58.169 36.000 12.68 0.00 42.99 1.47
2331 2544 7.282585 AGCTAGCTCCAACAAATGATGTATAA 58.717 34.615 12.68 0.00 42.99 0.98
2332 2545 7.941238 AGCTAGCTCCAACAAATGATGTATAAT 59.059 33.333 12.68 0.00 42.99 1.28
2333 2546 8.019669 GCTAGCTCCAACAAATGATGTATAATG 58.980 37.037 7.70 0.00 42.99 1.90
2334 2547 7.281040 AGCTCCAACAAATGATGTATAATGG 57.719 36.000 0.00 0.00 42.99 3.16
2335 2548 6.835488 AGCTCCAACAAATGATGTATAATGGT 59.165 34.615 0.00 0.00 42.99 3.55
2336 2549 7.998383 AGCTCCAACAAATGATGTATAATGGTA 59.002 33.333 0.00 0.00 42.99 3.25
2337 2550 8.629158 GCTCCAACAAATGATGTATAATGGTAA 58.371 33.333 0.00 0.00 42.99 2.85
2354 2567 7.462571 AATGGTAATGTAAAAGTCCAACTCC 57.537 36.000 0.00 0.00 0.00 3.85
2355 2568 5.942961 TGGTAATGTAAAAGTCCAACTCCA 58.057 37.500 0.00 0.00 0.00 3.86
2356 2569 6.366340 TGGTAATGTAAAAGTCCAACTCCAA 58.634 36.000 0.00 0.00 0.00 3.53
2357 2570 7.007723 TGGTAATGTAAAAGTCCAACTCCAAT 58.992 34.615 0.00 0.00 0.00 3.16
2358 2571 8.164733 TGGTAATGTAAAAGTCCAACTCCAATA 58.835 33.333 0.00 0.00 0.00 1.90
2359 2572 8.456471 GGTAATGTAAAAGTCCAACTCCAATAC 58.544 37.037 0.00 0.00 0.00 1.89
2360 2573 9.005777 GTAATGTAAAAGTCCAACTCCAATACA 57.994 33.333 0.00 0.00 0.00 2.29
2361 2574 8.650143 AATGTAAAAGTCCAACTCCAATACAT 57.350 30.769 0.00 0.00 34.05 2.29
2362 2575 7.447374 TGTAAAAGTCCAACTCCAATACATG 57.553 36.000 0.00 0.00 0.00 3.21
2363 2576 7.227873 TGTAAAAGTCCAACTCCAATACATGA 58.772 34.615 0.00 0.00 0.00 3.07
2364 2577 7.888021 TGTAAAAGTCCAACTCCAATACATGAT 59.112 33.333 0.00 0.00 0.00 2.45
2365 2578 6.764308 AAAGTCCAACTCCAATACATGATG 57.236 37.500 0.00 0.00 0.00 3.07
2366 2579 4.202441 AGTCCAACTCCAATACATGATGC 58.798 43.478 0.00 0.00 0.00 3.91
2367 2580 3.947196 GTCCAACTCCAATACATGATGCA 59.053 43.478 0.00 0.00 0.00 3.96
2368 2581 4.581824 GTCCAACTCCAATACATGATGCAT 59.418 41.667 0.00 0.00 0.00 3.96
2369 2582 4.581409 TCCAACTCCAATACATGATGCATG 59.419 41.667 2.46 5.90 46.18 4.06
2384 2597 7.891782 CATGATGCATGTTGAAGATGTAAAAC 58.108 34.615 2.46 0.00 37.12 2.43
2385 2598 6.389091 TGATGCATGTTGAAGATGTAAAACC 58.611 36.000 2.46 0.00 0.00 3.27
2386 2599 4.793071 TGCATGTTGAAGATGTAAAACCG 58.207 39.130 4.19 0.00 0.00 4.44
2387 2600 4.517075 TGCATGTTGAAGATGTAAAACCGA 59.483 37.500 4.19 0.00 0.00 4.69
2388 2601 4.851558 GCATGTTGAAGATGTAAAACCGAC 59.148 41.667 4.19 0.00 0.00 4.79
2389 2602 5.390613 CATGTTGAAGATGTAAAACCGACC 58.609 41.667 0.00 0.00 0.00 4.79
2390 2603 3.495377 TGTTGAAGATGTAAAACCGACCG 59.505 43.478 0.00 0.00 0.00 4.79
2391 2604 3.663995 TGAAGATGTAAAACCGACCGA 57.336 42.857 0.00 0.00 0.00 4.69
2392 2605 4.196626 TGAAGATGTAAAACCGACCGAT 57.803 40.909 0.00 0.00 0.00 4.18
2393 2606 3.930229 TGAAGATGTAAAACCGACCGATG 59.070 43.478 0.00 0.00 0.00 3.84
2394 2607 2.901249 AGATGTAAAACCGACCGATGG 58.099 47.619 0.00 0.00 0.00 3.51
2395 2608 1.329599 GATGTAAAACCGACCGATGGC 59.670 52.381 0.00 0.00 0.00 4.40
2396 2609 0.674269 TGTAAAACCGACCGATGGCC 60.674 55.000 0.00 0.00 0.00 5.36
2397 2610 1.448189 TAAAACCGACCGATGGCCG 60.448 57.895 0.00 0.00 38.18 6.13
2403 2616 4.760047 GACCGATGGCCGCACTGT 62.760 66.667 0.00 0.00 36.84 3.55
2406 2619 2.125713 CGATGGCCGCACTGTGTA 60.126 61.111 9.86 0.00 0.00 2.90
2407 2620 2.452813 CGATGGCCGCACTGTGTAC 61.453 63.158 9.86 0.00 0.00 2.90
2408 2621 1.375396 GATGGCCGCACTGTGTACA 60.375 57.895 9.86 0.00 0.00 2.90
2425 2638 2.558617 CAGCCATTGTACAGCTGCA 58.441 52.632 19.04 0.00 46.60 4.41
2426 2639 1.100510 CAGCCATTGTACAGCTGCAT 58.899 50.000 19.04 0.00 46.60 3.96
2427 2640 1.475280 CAGCCATTGTACAGCTGCATT 59.525 47.619 19.04 0.00 46.60 3.56
2428 2641 1.747355 AGCCATTGTACAGCTGCATTC 59.253 47.619 15.27 2.30 34.99 2.67
2429 2642 1.532505 GCCATTGTACAGCTGCATTCG 60.533 52.381 15.27 0.00 0.00 3.34
2430 2643 2.009051 CCATTGTACAGCTGCATTCGA 58.991 47.619 15.27 2.06 0.00 3.71
2431 2644 2.031314 CCATTGTACAGCTGCATTCGAG 59.969 50.000 15.27 0.00 0.00 4.04
2432 2645 1.078709 TTGTACAGCTGCATTCGAGC 58.921 50.000 15.27 0.00 36.65 5.03
2433 2646 0.037419 TGTACAGCTGCATTCGAGCA 60.037 50.000 15.27 0.00 43.35 4.26
2434 2647 1.293924 GTACAGCTGCATTCGAGCAT 58.706 50.000 15.27 0.00 44.68 3.79
2435 2648 1.004185 GTACAGCTGCATTCGAGCATG 60.004 52.381 15.27 0.00 44.68 4.06
2436 2649 0.392060 ACAGCTGCATTCGAGCATGA 60.392 50.000 15.27 0.00 44.68 3.07
2437 2650 0.730840 CAGCTGCATTCGAGCATGAA 59.269 50.000 0.00 0.00 44.68 2.57
2438 2651 1.131693 CAGCTGCATTCGAGCATGAAA 59.868 47.619 0.00 0.00 44.68 2.69
2439 2652 1.814394 AGCTGCATTCGAGCATGAAAA 59.186 42.857 1.02 0.00 44.68 2.29
2440 2653 2.229543 AGCTGCATTCGAGCATGAAAAA 59.770 40.909 1.02 0.00 44.68 1.94
2441 2654 2.597305 GCTGCATTCGAGCATGAAAAAG 59.403 45.455 0.00 0.00 44.68 2.27
2442 2655 2.597305 CTGCATTCGAGCATGAAAAAGC 59.403 45.455 0.00 0.00 44.68 3.51
2443 2656 2.030096 TGCATTCGAGCATGAAAAAGCA 60.030 40.909 0.00 10.03 40.11 3.91
2444 2657 2.988493 GCATTCGAGCATGAAAAAGCAA 59.012 40.909 0.00 0.00 0.00 3.91
2445 2658 3.615496 GCATTCGAGCATGAAAAAGCAAT 59.385 39.130 0.00 0.00 0.00 3.56
2446 2659 4.799949 GCATTCGAGCATGAAAAAGCAATA 59.200 37.500 0.00 0.00 0.00 1.90
2447 2660 5.461078 GCATTCGAGCATGAAAAAGCAATAT 59.539 36.000 0.00 0.00 0.00 1.28
2448 2661 6.019318 GCATTCGAGCATGAAAAAGCAATATT 60.019 34.615 0.00 0.00 0.00 1.28
2449 2662 7.464977 GCATTCGAGCATGAAAAAGCAATATTT 60.465 33.333 0.00 0.00 0.00 1.40
2450 2663 7.510428 TTCGAGCATGAAAAAGCAATATTTC 57.490 32.000 0.00 0.00 36.35 2.17
2451 2664 6.619744 TCGAGCATGAAAAAGCAATATTTCA 58.380 32.000 0.00 3.71 46.23 2.69
2452 2665 7.089538 TCGAGCATGAAAAAGCAATATTTCAA 58.910 30.769 0.00 0.00 45.56 2.69
2453 2666 7.598118 TCGAGCATGAAAAAGCAATATTTCAAA 59.402 29.630 0.00 0.00 45.56 2.69
2454 2667 8.385111 CGAGCATGAAAAAGCAATATTTCAAAT 58.615 29.630 0.00 0.00 45.56 2.32
2473 2686 9.823647 TTTCAAATTTCTATAACCAAAAGTGCA 57.176 25.926 0.00 0.00 0.00 4.57
2474 2687 9.995003 TTCAAATTTCTATAACCAAAAGTGCAT 57.005 25.926 0.00 0.00 0.00 3.96
2475 2688 9.638239 TCAAATTTCTATAACCAAAAGTGCATC 57.362 29.630 0.00 0.00 0.00 3.91
2476 2689 9.421806 CAAATTTCTATAACCAAAAGTGCATCA 57.578 29.630 0.00 0.00 0.00 3.07
2480 2693 7.477144 TCTATAACCAAAAGTGCATCATACG 57.523 36.000 0.00 0.00 0.00 3.06
2481 2694 2.919666 ACCAAAAGTGCATCATACGC 57.080 45.000 0.00 0.00 0.00 4.42
2482 2695 2.158559 ACCAAAAGTGCATCATACGCA 58.841 42.857 0.00 0.00 36.94 5.24
2483 2696 2.754552 ACCAAAAGTGCATCATACGCAT 59.245 40.909 0.00 0.00 42.32 4.73
2484 2697 3.181497 ACCAAAAGTGCATCATACGCATC 60.181 43.478 0.00 0.00 42.32 3.91
2485 2698 3.181498 CCAAAAGTGCATCATACGCATCA 60.181 43.478 0.00 0.00 42.32 3.07
2486 2699 4.413969 CAAAAGTGCATCATACGCATCAA 58.586 39.130 0.00 0.00 42.32 2.57
2487 2700 4.700268 AAAGTGCATCATACGCATCAAA 57.300 36.364 0.00 0.00 42.32 2.69
2488 2701 3.957671 AGTGCATCATACGCATCAAAG 57.042 42.857 0.00 0.00 42.32 2.77
2489 2702 3.273434 AGTGCATCATACGCATCAAAGT 58.727 40.909 0.00 0.00 42.32 2.66
2490 2703 3.691118 AGTGCATCATACGCATCAAAGTT 59.309 39.130 0.00 0.00 42.32 2.66
2491 2704 4.156556 AGTGCATCATACGCATCAAAGTTT 59.843 37.500 0.00 0.00 42.32 2.66
2492 2705 5.353956 AGTGCATCATACGCATCAAAGTTTA 59.646 36.000 0.00 0.00 42.32 2.01
2493 2706 6.027131 GTGCATCATACGCATCAAAGTTTAA 58.973 36.000 0.00 0.00 42.32 1.52
2494 2707 6.526325 GTGCATCATACGCATCAAAGTTTAAA 59.474 34.615 0.00 0.00 42.32 1.52
2495 2708 7.061673 GTGCATCATACGCATCAAAGTTTAAAA 59.938 33.333 0.00 0.00 42.32 1.52
2496 2709 7.758980 TGCATCATACGCATCAAAGTTTAAAAT 59.241 29.630 0.00 0.00 33.55 1.82
2497 2710 8.261908 GCATCATACGCATCAAAGTTTAAAATC 58.738 33.333 0.00 0.00 0.00 2.17
2498 2711 8.745837 CATCATACGCATCAAAGTTTAAAATCC 58.254 33.333 0.00 0.00 0.00 3.01
2499 2712 8.050778 TCATACGCATCAAAGTTTAAAATCCT 57.949 30.769 0.00 0.00 0.00 3.24
2500 2713 9.168451 TCATACGCATCAAAGTTTAAAATCCTA 57.832 29.630 0.00 0.00 0.00 2.94
2501 2714 9.221775 CATACGCATCAAAGTTTAAAATCCTAC 57.778 33.333 0.00 0.00 0.00 3.18
2502 2715 7.209471 ACGCATCAAAGTTTAAAATCCTACA 57.791 32.000 0.00 0.00 0.00 2.74
2503 2716 7.653647 ACGCATCAAAGTTTAAAATCCTACAA 58.346 30.769 0.00 0.00 0.00 2.41
2504 2717 7.593644 ACGCATCAAAGTTTAAAATCCTACAAC 59.406 33.333 0.00 0.00 0.00 3.32
2505 2718 7.061789 CGCATCAAAGTTTAAAATCCTACAACC 59.938 37.037 0.00 0.00 0.00 3.77
2506 2719 7.870445 GCATCAAAGTTTAAAATCCTACAACCA 59.130 33.333 0.00 0.00 0.00 3.67
2507 2720 9.757227 CATCAAAGTTTAAAATCCTACAACCAA 57.243 29.630 0.00 0.00 0.00 3.67
2512 2725 9.594478 AAGTTTAAAATCCTACAACCAAAAGTG 57.406 29.630 0.00 0.00 0.00 3.16
2513 2726 7.709182 AGTTTAAAATCCTACAACCAAAAGTGC 59.291 33.333 0.00 0.00 0.00 4.40
2514 2727 5.606348 AAAATCCTACAACCAAAAGTGCA 57.394 34.783 0.00 0.00 0.00 4.57
2515 2728 5.806654 AAATCCTACAACCAAAAGTGCAT 57.193 34.783 0.00 0.00 0.00 3.96
2516 2729 5.391312 AATCCTACAACCAAAAGTGCATC 57.609 39.130 0.00 0.00 0.00 3.91
2517 2730 3.826524 TCCTACAACCAAAAGTGCATCA 58.173 40.909 0.00 0.00 0.00 3.07
2518 2731 4.406456 TCCTACAACCAAAAGTGCATCAT 58.594 39.130 0.00 0.00 0.00 2.45
2519 2732 4.458989 TCCTACAACCAAAAGTGCATCATC 59.541 41.667 0.00 0.00 0.00 2.92
2520 2733 4.460382 CCTACAACCAAAAGTGCATCATCT 59.540 41.667 0.00 0.00 0.00 2.90
2521 2734 4.510038 ACAACCAAAAGTGCATCATCTC 57.490 40.909 0.00 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
207 211 9.764363 AAGCGTTGAATCTCAATCTATACAATA 57.236 29.630 0.00 0.00 38.79 1.90
268 304 3.003763 GGCTCGTCCCTCACCCTT 61.004 66.667 0.00 0.00 0.00 3.95
271 307 3.358076 CTTCGGCTCGTCCCTCACC 62.358 68.421 0.00 0.00 0.00 4.02
272 308 2.182030 CTTCGGCTCGTCCCTCAC 59.818 66.667 0.00 0.00 0.00 3.51
273 309 2.035155 TCTTCGGCTCGTCCCTCA 59.965 61.111 0.00 0.00 0.00 3.86
274 310 2.490685 GTCTTCGGCTCGTCCCTC 59.509 66.667 0.00 0.00 0.00 4.30
275 311 3.069318 GGTCTTCGGCTCGTCCCT 61.069 66.667 0.00 0.00 0.00 4.20
276 312 1.389609 TATGGTCTTCGGCTCGTCCC 61.390 60.000 0.00 0.00 0.00 4.46
277 313 0.674534 ATATGGTCTTCGGCTCGTCC 59.325 55.000 0.00 0.00 0.00 4.79
278 314 1.067212 ACATATGGTCTTCGGCTCGTC 59.933 52.381 7.80 0.00 0.00 4.20
279 315 1.112113 ACATATGGTCTTCGGCTCGT 58.888 50.000 7.80 0.00 0.00 4.18
280 316 1.491670 CACATATGGTCTTCGGCTCG 58.508 55.000 7.80 0.00 0.00 5.03
281 317 1.871080 CCACATATGGTCTTCGGCTC 58.129 55.000 7.80 0.00 41.64 4.70
296 353 1.514003 TTAATTTGCGAGCGTCCACA 58.486 45.000 0.00 0.00 0.00 4.17
326 383 4.261825 CCTTCCGCCTTTTTCACATGTTTA 60.262 41.667 0.00 0.00 0.00 2.01
344 401 1.978580 TCAGGGACTCTGTTTCCTTCC 59.021 52.381 1.35 0.00 43.76 3.46
354 411 1.309499 CGAGCTTCGTCAGGGACTCT 61.309 60.000 0.00 0.00 32.45 3.24
374 431 9.171701 GCAATATAACACGACTATAGCTATAGC 57.828 37.037 31.90 24.31 39.36 2.97
375 432 9.666626 GGCAATATAACACGACTATAGCTATAG 57.333 37.037 30.83 30.83 41.08 1.31
376 433 9.181061 TGGCAATATAACACGACTATAGCTATA 57.819 33.333 12.84 12.84 0.00 1.31
377 434 8.063200 TGGCAATATAACACGACTATAGCTAT 57.937 34.615 11.77 11.77 0.00 2.97
378 435 7.457024 TGGCAATATAACACGACTATAGCTA 57.543 36.000 0.00 0.00 0.00 3.32
379 436 6.340962 TGGCAATATAACACGACTATAGCT 57.659 37.500 0.00 0.00 0.00 3.32
380 437 6.399669 CGTTGGCAATATAACACGACTATAGC 60.400 42.308 1.92 0.00 0.00 2.97
520 586 1.530655 CTTGTTTCCGGTTGGGGCT 60.531 57.895 0.00 0.00 36.01 5.19
641 713 1.284785 CTCCTCTGTCCTCTGTCCTCT 59.715 57.143 0.00 0.00 0.00 3.69
642 714 1.005450 ACTCCTCTGTCCTCTGTCCTC 59.995 57.143 0.00 0.00 0.00 3.71
650 722 1.145945 TCACTGTGACTCCTCTGTCCT 59.854 52.381 6.36 0.00 36.21 3.85
791 874 0.039180 GGAAATGGACCGGAAAGGGT 59.961 55.000 9.46 0.00 46.96 4.34
1429 1604 4.796231 GCACGTCACCTCGCCGAT 62.796 66.667 0.00 0.00 0.00 4.18
1540 1718 0.681175 AATGACAAAACTGCCCCTGC 59.319 50.000 0.00 0.00 38.26 4.85
1580 1765 3.016971 TAGGCCTGCTGCACCCAT 61.017 61.111 17.99 2.99 43.89 4.00
1581 1766 4.033776 GTAGGCCTGCTGCACCCA 62.034 66.667 17.99 0.00 43.89 4.51
1582 1767 4.803908 GGTAGGCCTGCTGCACCC 62.804 72.222 21.02 2.00 43.89 4.61
1584 1769 4.082523 TCGGTAGGCCTGCTGCAC 62.083 66.667 23.89 9.49 43.89 4.57
1596 1781 4.124351 CGCGAACAGCCCTCGGTA 62.124 66.667 0.00 0.00 44.76 4.02
1598 1783 4.514577 ATCGCGAACAGCCCTCGG 62.515 66.667 15.24 0.00 44.76 4.63
1601 1786 2.185350 CTGATCGCGAACAGCCCT 59.815 61.111 29.55 4.46 44.76 5.19
1620 1805 0.742505 TACTGCTCGGTGGTTATCGG 59.257 55.000 0.00 0.00 0.00 4.18
1665 1851 6.544928 AACAGGAGTTGGTCAAGAATTTTT 57.455 33.333 0.00 0.00 36.39 1.94
1702 1888 0.105408 AAACACGGACGGTACTGCTT 59.895 50.000 0.23 0.00 0.00 3.91
1733 1920 7.335171 CCAGTCTTTATTGTGATCACTGATTCA 59.665 37.037 25.55 2.24 0.00 2.57
1756 1944 0.940126 CCGAATTCTCAATCGCCCAG 59.060 55.000 3.52 0.00 37.73 4.45
1760 1948 1.532868 CCATCCCGAATTCTCAATCGC 59.467 52.381 3.52 0.00 37.73 4.58
1762 1950 1.882623 GCCCATCCCGAATTCTCAATC 59.117 52.381 3.52 0.00 0.00 2.67
1773 1961 3.221389 CATTGCCAGCCCATCCCG 61.221 66.667 0.00 0.00 0.00 5.14
1775 1963 1.669999 GACACATTGCCAGCCCATCC 61.670 60.000 0.00 0.00 0.00 3.51
1799 1989 1.003580 AGTGCACTGGATTTGACGGAT 59.996 47.619 20.97 0.00 0.00 4.18
1851 2056 0.602638 ACGTGTCAACACCGATGCAT 60.603 50.000 0.00 0.00 43.66 3.96
1858 2063 2.796031 TCGATAACAACGTGTCAACACC 59.204 45.455 7.66 0.00 43.66 4.16
2046 2252 9.325248 TCCAAAAATTCTCTCCCAATAGATTTT 57.675 29.630 0.00 0.00 30.54 1.82
2054 2260 4.814967 AGGTTCCAAAAATTCTCTCCCAA 58.185 39.130 0.00 0.00 0.00 4.12
2055 2261 4.469469 AGGTTCCAAAAATTCTCTCCCA 57.531 40.909 0.00 0.00 0.00 4.37
2085 2291 8.359642 TCTTGAAGTATTGGAAAGTGGATTTTG 58.640 33.333 0.00 0.00 0.00 2.44
2086 2292 8.477419 TCTTGAAGTATTGGAAAGTGGATTTT 57.523 30.769 0.00 0.00 0.00 1.82
2175 2381 2.805353 CGACGACGACAGGCAAGG 60.805 66.667 0.00 0.00 42.66 3.61
2190 2396 1.143183 GGTAGATCAAAGGCGCCGA 59.857 57.895 23.20 13.48 0.00 5.54
2200 2406 3.023832 TCATCGCACTGAAGGTAGATCA 58.976 45.455 0.00 0.00 0.00 2.92
2206 2412 3.610040 TGTAATCATCGCACTGAAGGT 57.390 42.857 0.00 0.00 0.00 3.50
2221 2427 2.416547 GCGCTCGGCAATCATATGTAAT 59.583 45.455 0.00 0.00 42.87 1.89
2268 2474 5.527214 CCCTATTTGCTTCATGTGTCGAATA 59.473 40.000 0.00 0.00 0.00 1.75
2272 2478 2.223340 GCCCTATTTGCTTCATGTGTCG 60.223 50.000 0.00 0.00 0.00 4.35
2273 2479 2.754552 TGCCCTATTTGCTTCATGTGTC 59.245 45.455 0.00 0.00 0.00 3.67
2309 2522 7.998383 ACCATTATACATCATTTGTTGGAGCTA 59.002 33.333 0.00 0.00 39.87 3.32
2310 2523 6.835488 ACCATTATACATCATTTGTTGGAGCT 59.165 34.615 0.00 0.00 39.87 4.09
2311 2524 7.042797 ACCATTATACATCATTTGTTGGAGC 57.957 36.000 0.00 0.00 39.87 4.70
2328 2541 9.185680 GGAGTTGGACTTTTACATTACCATTAT 57.814 33.333 0.00 0.00 0.00 1.28
2329 2542 8.164733 TGGAGTTGGACTTTTACATTACCATTA 58.835 33.333 0.00 0.00 0.00 1.90
2330 2543 7.007723 TGGAGTTGGACTTTTACATTACCATT 58.992 34.615 0.00 0.00 0.00 3.16
2331 2544 6.548321 TGGAGTTGGACTTTTACATTACCAT 58.452 36.000 0.00 0.00 0.00 3.55
2332 2545 5.942961 TGGAGTTGGACTTTTACATTACCA 58.057 37.500 0.00 0.00 0.00 3.25
2333 2546 6.887626 TTGGAGTTGGACTTTTACATTACC 57.112 37.500 0.00 0.00 0.00 2.85
2334 2547 9.005777 TGTATTGGAGTTGGACTTTTACATTAC 57.994 33.333 0.00 0.00 0.00 1.89
2335 2548 9.747898 ATGTATTGGAGTTGGACTTTTACATTA 57.252 29.630 0.00 0.00 0.00 1.90
2336 2549 8.522830 CATGTATTGGAGTTGGACTTTTACATT 58.477 33.333 0.00 0.00 0.00 2.71
2337 2550 7.888021 TCATGTATTGGAGTTGGACTTTTACAT 59.112 33.333 0.00 0.00 0.00 2.29
2338 2551 7.227873 TCATGTATTGGAGTTGGACTTTTACA 58.772 34.615 0.00 0.00 0.00 2.41
2339 2552 7.681939 TCATGTATTGGAGTTGGACTTTTAC 57.318 36.000 0.00 0.00 0.00 2.01
2340 2553 7.148086 GCATCATGTATTGGAGTTGGACTTTTA 60.148 37.037 0.00 0.00 0.00 1.52
2341 2554 6.350445 GCATCATGTATTGGAGTTGGACTTTT 60.350 38.462 0.00 0.00 0.00 2.27
2342 2555 5.126061 GCATCATGTATTGGAGTTGGACTTT 59.874 40.000 0.00 0.00 0.00 2.66
2343 2556 4.641989 GCATCATGTATTGGAGTTGGACTT 59.358 41.667 0.00 0.00 0.00 3.01
2344 2557 4.202441 GCATCATGTATTGGAGTTGGACT 58.798 43.478 0.00 0.00 0.00 3.85
2345 2558 3.947196 TGCATCATGTATTGGAGTTGGAC 59.053 43.478 0.00 0.00 0.00 4.02
2346 2559 4.233632 TGCATCATGTATTGGAGTTGGA 57.766 40.909 0.00 0.00 0.00 3.53
2347 2560 4.866921 CATGCATCATGTATTGGAGTTGG 58.133 43.478 0.00 0.00 37.12 3.77
2359 2572 7.009815 GGTTTTACATCTTCAACATGCATCATG 59.990 37.037 0.00 5.35 46.18 3.07
2360 2573 7.037438 GGTTTTACATCTTCAACATGCATCAT 58.963 34.615 0.00 0.00 0.00 2.45
2361 2574 6.389091 GGTTTTACATCTTCAACATGCATCA 58.611 36.000 0.00 0.00 0.00 3.07
2362 2575 5.512788 CGGTTTTACATCTTCAACATGCATC 59.487 40.000 0.00 0.00 0.00 3.91
2363 2576 5.182950 TCGGTTTTACATCTTCAACATGCAT 59.817 36.000 0.00 0.00 0.00 3.96
2364 2577 4.517075 TCGGTTTTACATCTTCAACATGCA 59.483 37.500 0.00 0.00 0.00 3.96
2365 2578 4.851558 GTCGGTTTTACATCTTCAACATGC 59.148 41.667 0.00 0.00 0.00 4.06
2366 2579 5.390613 GGTCGGTTTTACATCTTCAACATG 58.609 41.667 0.00 0.00 0.00 3.21
2367 2580 4.153475 CGGTCGGTTTTACATCTTCAACAT 59.847 41.667 0.00 0.00 0.00 2.71
2368 2581 3.495377 CGGTCGGTTTTACATCTTCAACA 59.505 43.478 0.00 0.00 0.00 3.33
2369 2582 3.742369 TCGGTCGGTTTTACATCTTCAAC 59.258 43.478 0.00 0.00 0.00 3.18
2370 2583 3.992643 TCGGTCGGTTTTACATCTTCAA 58.007 40.909 0.00 0.00 0.00 2.69
2371 2584 3.663995 TCGGTCGGTTTTACATCTTCA 57.336 42.857 0.00 0.00 0.00 3.02
2372 2585 3.308866 CCATCGGTCGGTTTTACATCTTC 59.691 47.826 0.00 0.00 0.00 2.87
2373 2586 3.267483 CCATCGGTCGGTTTTACATCTT 58.733 45.455 0.00 0.00 0.00 2.40
2374 2587 2.901249 CCATCGGTCGGTTTTACATCT 58.099 47.619 0.00 0.00 0.00 2.90
2375 2588 1.329599 GCCATCGGTCGGTTTTACATC 59.670 52.381 0.00 0.00 0.00 3.06
2376 2589 1.375551 GCCATCGGTCGGTTTTACAT 58.624 50.000 0.00 0.00 0.00 2.29
2377 2590 0.674269 GGCCATCGGTCGGTTTTACA 60.674 55.000 0.00 0.00 0.00 2.41
2378 2591 2.092374 GGCCATCGGTCGGTTTTAC 58.908 57.895 0.00 0.00 0.00 2.01
2379 2592 4.621832 GGCCATCGGTCGGTTTTA 57.378 55.556 0.00 0.00 0.00 1.52
2386 2599 4.760047 ACAGTGCGGCCATCGGTC 62.760 66.667 2.24 0.00 39.69 4.79
2388 2601 3.657448 TACACAGTGCGGCCATCGG 62.657 63.158 2.24 0.00 39.69 4.18
2389 2602 2.125713 TACACAGTGCGGCCATCG 60.126 61.111 2.24 0.00 42.76 3.84
2390 2603 1.361668 CTGTACACAGTGCGGCCATC 61.362 60.000 2.24 0.00 39.09 3.51
2391 2604 1.375908 CTGTACACAGTGCGGCCAT 60.376 57.895 2.24 0.00 39.09 4.40
2392 2605 2.030412 CTGTACACAGTGCGGCCA 59.970 61.111 2.24 0.00 39.09 5.36
2393 2606 3.423154 GCTGTACACAGTGCGGCC 61.423 66.667 10.87 0.00 43.02 6.13
2394 2607 3.423154 GGCTGTACACAGTGCGGC 61.423 66.667 10.87 10.06 46.88 6.53
2395 2608 0.955428 AATGGCTGTACACAGTGCGG 60.955 55.000 10.87 0.00 45.45 5.69
2396 2609 0.166597 CAATGGCTGTACACAGTGCG 59.833 55.000 10.87 0.00 45.45 5.34
2397 2610 1.238439 ACAATGGCTGTACACAGTGC 58.762 50.000 12.26 5.24 45.45 4.40
2408 2621 1.747355 GAATGCAGCTGTACAATGGCT 59.253 47.619 16.64 2.41 36.70 4.75
2409 2622 1.532505 CGAATGCAGCTGTACAATGGC 60.533 52.381 16.64 7.41 0.00 4.40
2410 2623 2.009051 TCGAATGCAGCTGTACAATGG 58.991 47.619 16.64 2.85 0.00 3.16
2411 2624 2.538333 GCTCGAATGCAGCTGTACAATG 60.538 50.000 16.64 0.00 33.75 2.82
2412 2625 1.667724 GCTCGAATGCAGCTGTACAAT 59.332 47.619 16.64 0.50 33.75 2.71
2413 2626 1.078709 GCTCGAATGCAGCTGTACAA 58.921 50.000 16.64 0.00 33.75 2.41
2414 2627 0.037419 TGCTCGAATGCAGCTGTACA 60.037 50.000 16.64 5.99 38.12 2.90
2415 2628 1.004185 CATGCTCGAATGCAGCTGTAC 60.004 52.381 16.64 0.00 46.71 2.90
2416 2629 1.134729 TCATGCTCGAATGCAGCTGTA 60.135 47.619 16.64 12.13 46.71 2.74
2417 2630 0.392060 TCATGCTCGAATGCAGCTGT 60.392 50.000 16.64 0.00 46.71 4.40
2418 2631 0.730840 TTCATGCTCGAATGCAGCTG 59.269 50.000 10.11 10.11 46.71 4.24
2419 2632 1.456296 TTTCATGCTCGAATGCAGCT 58.544 45.000 5.54 0.00 46.71 4.24
2420 2633 2.267188 TTTTCATGCTCGAATGCAGC 57.733 45.000 5.54 0.00 46.71 5.25
2421 2634 2.597305 GCTTTTTCATGCTCGAATGCAG 59.403 45.455 5.54 0.00 46.71 4.41
2423 2636 2.598589 TGCTTTTTCATGCTCGAATGC 58.401 42.857 0.00 0.00 0.00 3.56
2424 2637 7.459394 AATATTGCTTTTTCATGCTCGAATG 57.541 32.000 0.00 0.00 0.00 2.67
2425 2638 7.760794 TGAAATATTGCTTTTTCATGCTCGAAT 59.239 29.630 0.00 0.00 37.03 3.34
2426 2639 7.089538 TGAAATATTGCTTTTTCATGCTCGAA 58.910 30.769 0.00 0.00 37.03 3.71
2427 2640 6.619744 TGAAATATTGCTTTTTCATGCTCGA 58.380 32.000 0.00 0.00 37.03 4.04
2428 2641 6.874297 TGAAATATTGCTTTTTCATGCTCG 57.126 33.333 0.00 0.00 37.03 5.03
2447 2660 9.823647 TGCACTTTTGGTTATAGAAATTTGAAA 57.176 25.926 0.00 0.00 0.00 2.69
2448 2661 9.995003 ATGCACTTTTGGTTATAGAAATTTGAA 57.005 25.926 0.00 0.00 0.00 2.69
2449 2662 9.638239 GATGCACTTTTGGTTATAGAAATTTGA 57.362 29.630 0.00 0.00 0.00 2.69
2450 2663 9.421806 TGATGCACTTTTGGTTATAGAAATTTG 57.578 29.630 0.00 0.00 0.00 2.32
2454 2667 8.394877 CGTATGATGCACTTTTGGTTATAGAAA 58.605 33.333 0.00 0.00 0.00 2.52
2455 2668 7.466725 GCGTATGATGCACTTTTGGTTATAGAA 60.467 37.037 0.00 0.00 0.00 2.10
2456 2669 6.018262 GCGTATGATGCACTTTTGGTTATAGA 60.018 38.462 0.00 0.00 0.00 1.98
2457 2670 6.136071 GCGTATGATGCACTTTTGGTTATAG 58.864 40.000 0.00 0.00 0.00 1.31
2458 2671 5.586643 TGCGTATGATGCACTTTTGGTTATA 59.413 36.000 0.00 0.00 34.76 0.98
2459 2672 4.397730 TGCGTATGATGCACTTTTGGTTAT 59.602 37.500 0.00 0.00 34.76 1.89
2460 2673 3.753797 TGCGTATGATGCACTTTTGGTTA 59.246 39.130 0.00 0.00 34.76 2.85
2461 2674 2.556189 TGCGTATGATGCACTTTTGGTT 59.444 40.909 0.00 0.00 34.76 3.67
2462 2675 2.158559 TGCGTATGATGCACTTTTGGT 58.841 42.857 0.00 0.00 34.76 3.67
2463 2676 2.917701 TGCGTATGATGCACTTTTGG 57.082 45.000 0.00 0.00 34.76 3.28
2464 2677 4.018649 TGATGCGTATGATGCACTTTTG 57.981 40.909 0.00 0.00 43.72 2.44
2465 2678 4.700268 TTGATGCGTATGATGCACTTTT 57.300 36.364 0.00 0.00 43.72 2.27
2466 2679 4.156556 ACTTTGATGCGTATGATGCACTTT 59.843 37.500 0.00 0.00 43.72 2.66
2467 2680 3.691118 ACTTTGATGCGTATGATGCACTT 59.309 39.130 0.00 0.00 43.72 3.16
2468 2681 3.273434 ACTTTGATGCGTATGATGCACT 58.727 40.909 0.00 0.00 43.72 4.40
2469 2682 3.680642 ACTTTGATGCGTATGATGCAC 57.319 42.857 0.00 0.00 43.72 4.57
2470 2683 4.700268 AAACTTTGATGCGTATGATGCA 57.300 36.364 0.00 0.00 45.17 3.96
2471 2684 7.504922 TTTTAAACTTTGATGCGTATGATGC 57.495 32.000 0.00 0.00 0.00 3.91
2472 2685 8.745837 GGATTTTAAACTTTGATGCGTATGATG 58.254 33.333 0.00 0.00 0.00 3.07
2473 2686 8.686334 AGGATTTTAAACTTTGATGCGTATGAT 58.314 29.630 0.00 0.00 0.00 2.45
2474 2687 8.050778 AGGATTTTAAACTTTGATGCGTATGA 57.949 30.769 0.00 0.00 0.00 2.15
2475 2688 9.221775 GTAGGATTTTAAACTTTGATGCGTATG 57.778 33.333 0.00 0.00 0.00 2.39
2476 2689 8.952278 TGTAGGATTTTAAACTTTGATGCGTAT 58.048 29.630 0.00 0.00 0.00 3.06
2477 2690 8.325421 TGTAGGATTTTAAACTTTGATGCGTA 57.675 30.769 0.00 0.00 0.00 4.42
2478 2691 7.209471 TGTAGGATTTTAAACTTTGATGCGT 57.791 32.000 0.00 0.00 0.00 5.24
2479 2692 7.061789 GGTTGTAGGATTTTAAACTTTGATGCG 59.938 37.037 0.00 0.00 0.00 4.73
2480 2693 7.870445 TGGTTGTAGGATTTTAAACTTTGATGC 59.130 33.333 0.00 0.00 0.00 3.91
2481 2694 9.757227 TTGGTTGTAGGATTTTAAACTTTGATG 57.243 29.630 0.00 0.00 0.00 3.07
2486 2699 9.594478 CACTTTTGGTTGTAGGATTTTAAACTT 57.406 29.630 0.00 0.00 0.00 2.66
2487 2700 7.709182 GCACTTTTGGTTGTAGGATTTTAAACT 59.291 33.333 0.00 0.00 0.00 2.66
2488 2701 7.492994 TGCACTTTTGGTTGTAGGATTTTAAAC 59.507 33.333 0.00 0.00 0.00 2.01
2489 2702 7.556844 TGCACTTTTGGTTGTAGGATTTTAAA 58.443 30.769 0.00 0.00 0.00 1.52
2490 2703 7.113658 TGCACTTTTGGTTGTAGGATTTTAA 57.886 32.000 0.00 0.00 0.00 1.52
2491 2704 6.716934 TGCACTTTTGGTTGTAGGATTTTA 57.283 33.333 0.00 0.00 0.00 1.52
2492 2705 5.606348 TGCACTTTTGGTTGTAGGATTTT 57.394 34.783 0.00 0.00 0.00 1.82
2493 2706 5.304101 TGATGCACTTTTGGTTGTAGGATTT 59.696 36.000 0.00 0.00 0.00 2.17
2494 2707 4.832266 TGATGCACTTTTGGTTGTAGGATT 59.168 37.500 0.00 0.00 0.00 3.01
2495 2708 4.406456 TGATGCACTTTTGGTTGTAGGAT 58.594 39.130 0.00 0.00 0.00 3.24
2496 2709 3.826524 TGATGCACTTTTGGTTGTAGGA 58.173 40.909 0.00 0.00 0.00 2.94
2497 2710 4.460382 AGATGATGCACTTTTGGTTGTAGG 59.540 41.667 0.00 0.00 0.00 3.18
2498 2711 5.633830 AGATGATGCACTTTTGGTTGTAG 57.366 39.130 0.00 0.00 0.00 2.74
2499 2712 5.627499 GAGATGATGCACTTTTGGTTGTA 57.373 39.130 0.00 0.00 0.00 2.41
2500 2713 4.510038 GAGATGATGCACTTTTGGTTGT 57.490 40.909 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.