Multiple sequence alignment - TraesCS2B01G412800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G412800 chr2B 100.000 2747 0 0 1 2747 588154630 588157376 0.000000e+00 5073
1 TraesCS2B01G412800 chr2B 82.907 977 137 24 447 1406 563844908 563845871 0.000000e+00 852
2 TraesCS2B01G412800 chr1B 89.676 2189 181 17 447 2625 563006681 563008834 0.000000e+00 2748
3 TraesCS2B01G412800 chr1B 89.639 2191 171 22 447 2625 562905369 562907515 0.000000e+00 2737
4 TraesCS2B01G412800 chr5B 92.199 1846 114 11 910 2747 255357967 255356144 0.000000e+00 2584
5 TraesCS2B01G412800 chr5B 86.726 452 57 3 447 896 255377711 255377261 1.470000e-137 499
6 TraesCS2B01G412800 chr4B 86.330 2319 249 34 452 2747 473139928 473142201 0.000000e+00 2464
7 TraesCS2B01G412800 chr4B 93.155 1607 101 6 1147 2747 75537435 75539038 0.000000e+00 2350
8 TraesCS2B01G412800 chr4B 85.621 306 31 2 849 1154 75535045 75535337 2.660000e-80 309
9 TraesCS2B01G412800 chr3D 89.527 1375 131 7 1378 2747 2882824 2884190 0.000000e+00 1729
10 TraesCS2B01G412800 chr3D 89.547 1368 131 7 1385 2747 532182987 532184347 0.000000e+00 1724
11 TraesCS2B01G412800 chr3D 84.074 967 121 18 446 1406 532182015 532182954 0.000000e+00 902
12 TraesCS2B01G412800 chr3D 83.971 967 121 16 447 1406 2881832 2882771 0.000000e+00 896
13 TraesCS2B01G412800 chr3D 89.579 451 40 2 1 450 295423970 295423526 1.430000e-157 566
14 TraesCS2B01G412800 chr3D 89.412 425 41 4 28 450 282197437 282197015 1.450000e-147 532
15 TraesCS2B01G412800 chr1D 89.455 1375 132 8 1378 2747 429509470 429510836 0.000000e+00 1724
16 TraesCS2B01G412800 chr1D 89.221 1373 134 8 1381 2747 395422785 395421421 0.000000e+00 1703
17 TraesCS2B01G412800 chr1D 83.644 966 125 18 447 1406 429508479 429509417 0.000000e+00 878
18 TraesCS2B01G412800 chr7D 89.236 1375 132 9 1378 2747 28219974 28221337 0.000000e+00 1705
19 TraesCS2B01G412800 chr7D 83.918 970 123 18 444 1406 28219005 28219948 0.000000e+00 896
20 TraesCS2B01G412800 chr7D 89.602 452 38 4 1 450 357118438 357118882 1.430000e-157 566
21 TraesCS2B01G412800 chr7D 89.404 453 41 2 1 452 326238682 326239128 5.140000e-157 564
22 TraesCS2B01G412800 chr7D 89.286 448 41 3 3 450 325760191 325759751 3.090000e-154 555
23 TraesCS2B01G412800 chr7D 88.914 451 42 4 1 450 325785155 325784712 1.440000e-152 549
24 TraesCS2B01G412800 chr7D 88.470 451 44 4 1 450 325735493 325735050 3.110000e-149 538
25 TraesCS2B01G412800 chr3A 84.330 970 124 17 446 1406 554079340 554080290 0.000000e+00 924
26 TraesCS2B01G412800 chrUn 83.971 967 120 17 447 1406 11302899 11303837 0.000000e+00 894
27 TraesCS2B01G412800 chr6D 83.868 967 124 17 446 1406 83069335 83070275 0.000000e+00 893
28 TraesCS2B01G412800 chr6D 88.470 451 45 3 1 450 328498620 328499064 3.110000e-149 538
29 TraesCS2B01G412800 chr5D 83.831 971 124 13 443 1406 473119790 473120734 0.000000e+00 893
30 TraesCS2B01G412800 chr2D 83.573 974 132 10 447 1418 476806028 476805081 0.000000e+00 887
31 TraesCS2B01G412800 chr2D 89.111 450 42 2 1 450 282402910 282403352 1.110000e-153 553


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G412800 chr2B 588154630 588157376 2746 False 5073.0 5073 100.0000 1 2747 1 chr2B.!!$F2 2746
1 TraesCS2B01G412800 chr2B 563844908 563845871 963 False 852.0 852 82.9070 447 1406 1 chr2B.!!$F1 959
2 TraesCS2B01G412800 chr1B 563006681 563008834 2153 False 2748.0 2748 89.6760 447 2625 1 chr1B.!!$F2 2178
3 TraesCS2B01G412800 chr1B 562905369 562907515 2146 False 2737.0 2737 89.6390 447 2625 1 chr1B.!!$F1 2178
4 TraesCS2B01G412800 chr5B 255356144 255357967 1823 True 2584.0 2584 92.1990 910 2747 1 chr5B.!!$R1 1837
5 TraesCS2B01G412800 chr4B 473139928 473142201 2273 False 2464.0 2464 86.3300 452 2747 1 chr4B.!!$F1 2295
6 TraesCS2B01G412800 chr4B 75535045 75539038 3993 False 1329.5 2350 89.3880 849 2747 2 chr4B.!!$F2 1898
7 TraesCS2B01G412800 chr3D 532182015 532184347 2332 False 1313.0 1724 86.8105 446 2747 2 chr3D.!!$F2 2301
8 TraesCS2B01G412800 chr3D 2881832 2884190 2358 False 1312.5 1729 86.7490 447 2747 2 chr3D.!!$F1 2300
9 TraesCS2B01G412800 chr1D 395421421 395422785 1364 True 1703.0 1703 89.2210 1381 2747 1 chr1D.!!$R1 1366
10 TraesCS2B01G412800 chr1D 429508479 429510836 2357 False 1301.0 1724 86.5495 447 2747 2 chr1D.!!$F1 2300
11 TraesCS2B01G412800 chr7D 28219005 28221337 2332 False 1300.5 1705 86.5770 444 2747 2 chr7D.!!$F3 2303
12 TraesCS2B01G412800 chr3A 554079340 554080290 950 False 924.0 924 84.3300 446 1406 1 chr3A.!!$F1 960
13 TraesCS2B01G412800 chrUn 11302899 11303837 938 False 894.0 894 83.9710 447 1406 1 chrUn.!!$F1 959
14 TraesCS2B01G412800 chr6D 83069335 83070275 940 False 893.0 893 83.8680 446 1406 1 chr6D.!!$F1 960
15 TraesCS2B01G412800 chr5D 473119790 473120734 944 False 893.0 893 83.8310 443 1406 1 chr5D.!!$F1 963
16 TraesCS2B01G412800 chr2D 476805081 476806028 947 True 887.0 887 83.5730 447 1418 1 chr2D.!!$R1 971

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
363 364 0.039035 TAAATGGGCTCACACCACCC 59.961 55.0 0.0 0.0 41.58 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2115 4354 0.32336 GCCAGGCCATCCACACTTTA 60.323 55.0 5.01 0.0 33.74 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.030562 CGCACGGGTTGGAGTCTT 59.969 61.111 0.00 0.00 0.00 3.01
18 19 2.317609 CGCACGGGTTGGAGTCTTG 61.318 63.158 0.00 0.00 0.00 3.02
19 20 1.227853 GCACGGGTTGGAGTCTTGT 60.228 57.895 0.00 0.00 0.00 3.16
20 21 1.228657 GCACGGGTTGGAGTCTTGTC 61.229 60.000 0.00 0.00 0.00 3.18
21 22 0.944311 CACGGGTTGGAGTCTTGTCG 60.944 60.000 0.00 0.00 0.00 4.35
22 23 2.027625 CGGGTTGGAGTCTTGTCGC 61.028 63.158 0.00 0.00 0.00 5.19
23 24 1.070786 GGGTTGGAGTCTTGTCGCA 59.929 57.895 0.00 0.00 0.00 5.10
24 25 1.228657 GGGTTGGAGTCTTGTCGCAC 61.229 60.000 0.00 0.00 0.00 5.34
25 26 1.228657 GGTTGGAGTCTTGTCGCACC 61.229 60.000 0.00 0.00 0.00 5.01
26 27 1.070786 TTGGAGTCTTGTCGCACCC 59.929 57.895 0.00 0.00 0.00 4.61
27 28 2.432628 GGAGTCTTGTCGCACCCG 60.433 66.667 0.00 0.00 0.00 5.28
28 29 3.112709 GAGTCTTGTCGCACCCGC 61.113 66.667 0.00 0.00 0.00 6.13
44 45 4.859784 GCGCCTGCGTAAATTTGT 57.140 50.000 13.57 0.00 42.09 2.83
45 46 2.348856 GCGCCTGCGTAAATTTGTG 58.651 52.632 13.57 0.00 42.09 3.33
46 47 0.386731 GCGCCTGCGTAAATTTGTGT 60.387 50.000 13.57 0.00 42.09 3.72
47 48 1.928595 GCGCCTGCGTAAATTTGTGTT 60.929 47.619 13.57 0.00 42.09 3.32
48 49 2.389998 CGCCTGCGTAAATTTGTGTTT 58.610 42.857 2.83 0.00 34.35 2.83
49 50 3.556513 CGCCTGCGTAAATTTGTGTTTA 58.443 40.909 2.83 0.00 34.35 2.01
50 51 4.162812 CGCCTGCGTAAATTTGTGTTTAT 58.837 39.130 2.83 0.00 34.35 1.40
51 52 4.262045 CGCCTGCGTAAATTTGTGTTTATC 59.738 41.667 2.83 0.00 34.35 1.75
52 53 5.399013 GCCTGCGTAAATTTGTGTTTATCT 58.601 37.500 0.00 0.00 0.00 1.98
53 54 5.861787 GCCTGCGTAAATTTGTGTTTATCTT 59.138 36.000 0.00 0.00 0.00 2.40
54 55 7.024768 GCCTGCGTAAATTTGTGTTTATCTTA 58.975 34.615 0.00 0.00 0.00 2.10
55 56 7.007995 GCCTGCGTAAATTTGTGTTTATCTTAC 59.992 37.037 0.00 0.00 0.00 2.34
56 57 8.234546 CCTGCGTAAATTTGTGTTTATCTTACT 58.765 33.333 0.00 0.00 0.00 2.24
57 58 9.607285 CTGCGTAAATTTGTGTTTATCTTACTT 57.393 29.630 0.00 0.00 0.00 2.24
58 59 9.953697 TGCGTAAATTTGTGTTTATCTTACTTT 57.046 25.926 0.00 0.00 0.00 2.66
75 76 9.660180 ATCTTACTTTTTCCTCTATGAACTGAC 57.340 33.333 0.00 0.00 0.00 3.51
76 77 8.647796 TCTTACTTTTTCCTCTATGAACTGACA 58.352 33.333 0.00 0.00 0.00 3.58
77 78 8.833231 TTACTTTTTCCTCTATGAACTGACAG 57.167 34.615 0.00 0.00 0.00 3.51
78 79 6.234177 ACTTTTTCCTCTATGAACTGACAGG 58.766 40.000 7.51 0.00 0.00 4.00
79 80 5.825593 TTTTCCTCTATGAACTGACAGGT 57.174 39.130 7.51 0.00 0.00 4.00
80 81 4.808414 TTCCTCTATGAACTGACAGGTG 57.192 45.455 7.51 0.00 0.00 4.00
81 82 3.099905 TCCTCTATGAACTGACAGGTGG 58.900 50.000 7.51 0.00 0.00 4.61
82 83 2.169352 CCTCTATGAACTGACAGGTGGG 59.831 54.545 7.51 0.00 0.00 4.61
83 84 3.099905 CTCTATGAACTGACAGGTGGGA 58.900 50.000 7.51 0.00 0.00 4.37
84 85 2.832129 TCTATGAACTGACAGGTGGGAC 59.168 50.000 7.51 0.00 0.00 4.46
85 86 0.693049 ATGAACTGACAGGTGGGACC 59.307 55.000 7.51 0.00 38.99 4.46
86 87 1.375326 GAACTGACAGGTGGGACCC 59.625 63.158 2.45 2.45 39.75 4.46
87 88 1.385347 AACTGACAGGTGGGACCCA 60.385 57.895 9.95 9.95 39.75 4.51
96 97 4.091517 TGGGACCCACAAGGAACA 57.908 55.556 9.95 0.00 39.89 3.18
97 98 2.562953 TGGGACCCACAAGGAACAT 58.437 52.632 9.95 0.00 39.89 2.71
98 99 0.112218 TGGGACCCACAAGGAACATG 59.888 55.000 9.95 0.00 39.89 3.21
99 100 0.611896 GGGACCCACAAGGAACATGG 60.612 60.000 5.33 0.00 39.89 3.66
100 101 0.112412 GGACCCACAAGGAACATGGT 59.888 55.000 0.00 0.00 39.89 3.55
101 102 1.534729 GACCCACAAGGAACATGGTC 58.465 55.000 0.73 0.73 39.89 4.02
102 103 0.850100 ACCCACAAGGAACATGGTCA 59.150 50.000 13.90 0.00 39.89 4.02
103 104 1.216678 ACCCACAAGGAACATGGTCAA 59.783 47.619 13.90 0.00 39.89 3.18
104 105 2.158325 ACCCACAAGGAACATGGTCAAT 60.158 45.455 13.90 0.00 39.89 2.57
105 106 2.899256 CCCACAAGGAACATGGTCAATT 59.101 45.455 13.90 3.73 38.24 2.32
106 107 3.324556 CCCACAAGGAACATGGTCAATTT 59.675 43.478 13.90 0.69 38.24 1.82
107 108 4.526262 CCCACAAGGAACATGGTCAATTTA 59.474 41.667 13.90 0.00 38.24 1.40
108 109 5.011533 CCCACAAGGAACATGGTCAATTTAA 59.988 40.000 13.90 0.00 38.24 1.52
109 110 5.925969 CCACAAGGAACATGGTCAATTTAAC 59.074 40.000 13.90 0.00 36.89 2.01
110 111 5.925969 CACAAGGAACATGGTCAATTTAACC 59.074 40.000 13.90 0.00 37.31 2.85
111 112 9.304531 CCACAAGGAACATGGTCAATTTAACCA 62.305 40.741 13.90 11.02 43.89 3.67
121 122 7.447374 TGGTCAATTTAACCAGTCAACATAG 57.553 36.000 5.52 0.00 41.84 2.23
122 123 7.001674 TGGTCAATTTAACCAGTCAACATAGT 58.998 34.615 5.52 0.00 41.84 2.12
123 124 7.040755 TGGTCAATTTAACCAGTCAACATAGTG 60.041 37.037 5.52 0.00 41.84 2.74
124 125 6.801862 GTCAATTTAACCAGTCAACATAGTGC 59.198 38.462 0.00 0.00 0.00 4.40
125 126 5.897377 ATTTAACCAGTCAACATAGTGCC 57.103 39.130 0.00 0.00 0.00 5.01
126 127 2.949177 AACCAGTCAACATAGTGCCA 57.051 45.000 0.00 0.00 0.00 4.92
127 128 2.185004 ACCAGTCAACATAGTGCCAC 57.815 50.000 0.00 0.00 0.00 5.01
128 129 1.419762 ACCAGTCAACATAGTGCCACA 59.580 47.619 0.00 0.00 0.00 4.17
129 130 1.806542 CCAGTCAACATAGTGCCACAC 59.193 52.381 0.00 0.00 34.10 3.82
130 131 2.493035 CAGTCAACATAGTGCCACACA 58.507 47.619 0.00 0.00 36.74 3.72
131 132 2.481568 CAGTCAACATAGTGCCACACAG 59.518 50.000 0.00 0.00 36.74 3.66
132 133 2.368548 AGTCAACATAGTGCCACACAGA 59.631 45.455 0.00 0.00 36.74 3.41
133 134 2.480419 GTCAACATAGTGCCACACAGAC 59.520 50.000 0.00 0.00 36.74 3.51
134 135 2.368548 TCAACATAGTGCCACACAGACT 59.631 45.455 0.00 0.00 36.74 3.24
135 136 3.576550 TCAACATAGTGCCACACAGACTA 59.423 43.478 0.00 0.00 36.74 2.59
136 137 4.222810 TCAACATAGTGCCACACAGACTAT 59.777 41.667 0.00 0.00 36.74 2.12
137 138 4.826274 ACATAGTGCCACACAGACTATT 57.174 40.909 0.00 0.00 36.74 1.73
138 139 5.165961 ACATAGTGCCACACAGACTATTT 57.834 39.130 0.00 0.00 36.74 1.40
139 140 4.937620 ACATAGTGCCACACAGACTATTTG 59.062 41.667 0.00 0.00 36.74 2.32
140 141 2.783135 AGTGCCACACAGACTATTTGG 58.217 47.619 0.00 0.00 36.74 3.28
142 143 0.811281 GCCACACAGACTATTTGGCC 59.189 55.000 0.00 0.00 45.95 5.36
143 144 1.086696 CCACACAGACTATTTGGCCG 58.913 55.000 0.00 0.00 0.00 6.13
144 145 1.086696 CACACAGACTATTTGGCCGG 58.913 55.000 0.00 0.00 0.00 6.13
145 146 0.690762 ACACAGACTATTTGGCCGGT 59.309 50.000 1.90 0.00 0.00 5.28
146 147 1.073284 ACACAGACTATTTGGCCGGTT 59.927 47.619 1.90 0.00 0.00 4.44
147 148 2.303600 ACACAGACTATTTGGCCGGTTA 59.696 45.455 1.90 0.00 0.00 2.85
148 149 3.244630 ACACAGACTATTTGGCCGGTTAA 60.245 43.478 1.90 0.00 0.00 2.01
149 150 3.126343 CACAGACTATTTGGCCGGTTAAC 59.874 47.826 1.90 0.00 0.00 2.01
150 151 3.244630 ACAGACTATTTGGCCGGTTAACA 60.245 43.478 8.10 0.00 0.00 2.41
151 152 3.374058 CAGACTATTTGGCCGGTTAACAG 59.626 47.826 8.10 2.98 0.00 3.16
152 153 3.262405 AGACTATTTGGCCGGTTAACAGA 59.738 43.478 8.10 0.00 0.00 3.41
153 154 3.606687 ACTATTTGGCCGGTTAACAGAG 58.393 45.455 8.10 0.00 0.00 3.35
154 155 2.579410 ATTTGGCCGGTTAACAGAGT 57.421 45.000 8.10 0.00 0.00 3.24
155 156 1.600023 TTTGGCCGGTTAACAGAGTG 58.400 50.000 8.10 0.00 0.00 3.51
156 157 0.887387 TTGGCCGGTTAACAGAGTGC 60.887 55.000 8.10 2.60 0.00 4.40
157 158 1.302192 GGCCGGTTAACAGAGTGCA 60.302 57.895 8.10 0.00 0.00 4.57
158 159 0.887387 GGCCGGTTAACAGAGTGCAA 60.887 55.000 8.10 0.00 0.00 4.08
159 160 1.165270 GCCGGTTAACAGAGTGCAAT 58.835 50.000 8.10 0.00 0.00 3.56
160 161 1.130561 GCCGGTTAACAGAGTGCAATC 59.869 52.381 5.91 5.91 0.00 2.67
161 162 2.699954 CCGGTTAACAGAGTGCAATCT 58.300 47.619 11.63 11.63 0.00 2.40
170 171 3.345508 AGAGTGCAATCTGATGCTGAA 57.654 42.857 17.19 0.00 46.54 3.02
171 172 3.008330 AGAGTGCAATCTGATGCTGAAC 58.992 45.455 17.19 3.75 46.54 3.18
172 173 1.736126 AGTGCAATCTGATGCTGAACG 59.264 47.619 11.45 0.00 46.54 3.95
173 174 1.089112 TGCAATCTGATGCTGAACGG 58.911 50.000 11.45 0.00 46.54 4.44
174 175 1.089920 GCAATCTGATGCTGAACGGT 58.910 50.000 0.00 0.00 43.06 4.83
175 176 1.202110 GCAATCTGATGCTGAACGGTG 60.202 52.381 0.00 0.00 43.06 4.94
176 177 2.349590 CAATCTGATGCTGAACGGTGA 58.650 47.619 0.00 0.00 0.00 4.02
177 178 2.306341 ATCTGATGCTGAACGGTGAG 57.694 50.000 0.00 0.00 0.00 3.51
178 179 0.390340 TCTGATGCTGAACGGTGAGC 60.390 55.000 4.42 4.42 35.65 4.26
181 182 4.047834 TGCTGAACGGTGAGCAAG 57.952 55.556 13.67 0.00 42.22 4.01
182 183 1.146041 TGCTGAACGGTGAGCAAGT 59.854 52.632 13.67 0.00 42.22 3.16
183 184 1.159713 TGCTGAACGGTGAGCAAGTG 61.160 55.000 13.67 0.00 42.22 3.16
184 185 0.880278 GCTGAACGGTGAGCAAGTGA 60.880 55.000 7.16 0.00 35.15 3.41
185 186 0.861837 CTGAACGGTGAGCAAGTGAC 59.138 55.000 0.00 0.00 0.00 3.67
186 187 0.531974 TGAACGGTGAGCAAGTGACC 60.532 55.000 0.00 0.00 0.00 4.02
188 189 2.029073 CGGTGAGCAAGTGACCGT 59.971 61.111 0.00 0.00 46.11 4.83
189 190 1.287815 CGGTGAGCAAGTGACCGTA 59.712 57.895 0.00 0.00 46.11 4.02
190 191 0.108804 CGGTGAGCAAGTGACCGTAT 60.109 55.000 0.00 0.00 46.11 3.06
191 192 1.133598 CGGTGAGCAAGTGACCGTATA 59.866 52.381 0.00 0.00 46.11 1.47
192 193 2.416296 CGGTGAGCAAGTGACCGTATAA 60.416 50.000 0.00 0.00 46.11 0.98
193 194 3.737047 CGGTGAGCAAGTGACCGTATAAT 60.737 47.826 0.00 0.00 46.11 1.28
194 195 3.802685 GGTGAGCAAGTGACCGTATAATC 59.197 47.826 0.00 0.00 0.00 1.75
195 196 4.430007 GTGAGCAAGTGACCGTATAATCA 58.570 43.478 0.00 0.00 0.00 2.57
196 197 4.267928 GTGAGCAAGTGACCGTATAATCAC 59.732 45.833 5.33 5.33 44.64 3.06
197 198 3.793559 AGCAAGTGACCGTATAATCACC 58.206 45.455 8.65 0.00 45.28 4.02
198 199 2.538449 GCAAGTGACCGTATAATCACCG 59.462 50.000 8.65 3.84 45.28 4.94
199 200 3.777478 CAAGTGACCGTATAATCACCGT 58.223 45.455 8.65 0.00 45.28 4.83
200 201 4.734402 GCAAGTGACCGTATAATCACCGTA 60.734 45.833 8.65 0.00 45.28 4.02
201 202 5.342433 CAAGTGACCGTATAATCACCGTAA 58.658 41.667 8.65 0.00 45.28 3.18
202 203 5.581126 AGTGACCGTATAATCACCGTAAA 57.419 39.130 8.65 0.00 45.28 2.01
203 204 5.964758 AGTGACCGTATAATCACCGTAAAA 58.035 37.500 8.65 0.00 45.28 1.52
204 205 5.807011 AGTGACCGTATAATCACCGTAAAAC 59.193 40.000 8.65 0.00 45.28 2.43
205 206 4.797868 TGACCGTATAATCACCGTAAAACG 59.202 41.667 0.00 0.00 42.11 3.60
206 207 4.743493 ACCGTATAATCACCGTAAAACGT 58.257 39.130 0.00 0.00 40.58 3.99
207 208 5.885881 ACCGTATAATCACCGTAAAACGTA 58.114 37.500 0.00 0.00 40.58 3.57
208 209 6.503524 ACCGTATAATCACCGTAAAACGTAT 58.496 36.000 0.00 0.00 40.58 3.06
209 210 7.644490 ACCGTATAATCACCGTAAAACGTATA 58.356 34.615 0.00 0.00 40.58 1.47
210 211 8.296713 ACCGTATAATCACCGTAAAACGTATAT 58.703 33.333 0.00 0.00 40.58 0.86
211 212 9.767684 CCGTATAATCACCGTAAAACGTATATA 57.232 33.333 0.00 0.00 40.58 0.86
217 218 7.928908 TCACCGTAAAACGTATATATTGACC 57.071 36.000 0.00 0.00 40.58 4.02
218 219 6.636447 TCACCGTAAAACGTATATATTGACCG 59.364 38.462 0.00 0.00 40.58 4.79
219 220 6.417635 CACCGTAAAACGTATATATTGACCGT 59.582 38.462 0.00 0.00 40.58 4.83
220 221 7.589587 CACCGTAAAACGTATATATTGACCGTA 59.410 37.037 0.00 0.00 40.58 4.02
221 222 8.132362 ACCGTAAAACGTATATATTGACCGTAA 58.868 33.333 0.00 0.00 40.58 3.18
222 223 9.128107 CCGTAAAACGTATATATTGACCGTAAT 57.872 33.333 0.00 0.00 40.58 1.89
223 224 9.927324 CGTAAAACGTATATATTGACCGTAATG 57.073 33.333 0.00 0.00 36.74 1.90
226 227 7.807687 AACGTATATATTGACCGTAATGAGC 57.192 36.000 0.00 0.00 0.00 4.26
227 228 6.025896 ACGTATATATTGACCGTAATGAGCG 58.974 40.000 0.00 0.00 0.00 5.03
228 229 6.025896 CGTATATATTGACCGTAATGAGCGT 58.974 40.000 0.00 0.00 0.00 5.07
229 230 7.148423 ACGTATATATTGACCGTAATGAGCGTA 60.148 37.037 0.00 0.00 0.00 4.42
230 231 7.854422 CGTATATATTGACCGTAATGAGCGTAT 59.146 37.037 0.00 0.00 0.00 3.06
231 232 9.512435 GTATATATTGACCGTAATGAGCGTATT 57.488 33.333 0.00 0.00 0.00 1.89
232 233 6.946229 ATATTGACCGTAATGAGCGTATTC 57.054 37.500 0.00 0.00 0.00 1.75
233 234 4.380841 TTGACCGTAATGAGCGTATTCT 57.619 40.909 0.00 0.00 0.00 2.40
234 235 3.702330 TGACCGTAATGAGCGTATTCTG 58.298 45.455 0.00 0.00 0.00 3.02
235 236 3.379057 TGACCGTAATGAGCGTATTCTGA 59.621 43.478 0.00 0.00 0.00 3.27
236 237 4.142337 TGACCGTAATGAGCGTATTCTGAA 60.142 41.667 0.00 0.00 0.00 3.02
237 238 4.360563 ACCGTAATGAGCGTATTCTGAAG 58.639 43.478 0.00 0.00 0.00 3.02
238 239 4.142227 ACCGTAATGAGCGTATTCTGAAGT 60.142 41.667 0.00 0.00 0.00 3.01
239 240 4.441415 CCGTAATGAGCGTATTCTGAAGTC 59.559 45.833 0.00 0.00 0.00 3.01
240 241 4.441415 CGTAATGAGCGTATTCTGAAGTCC 59.559 45.833 0.00 0.00 0.00 3.85
241 242 4.744795 AATGAGCGTATTCTGAAGTCCT 57.255 40.909 0.00 0.00 0.00 3.85
242 243 3.510388 TGAGCGTATTCTGAAGTCCTG 57.490 47.619 0.00 0.00 0.00 3.86
243 244 2.826128 TGAGCGTATTCTGAAGTCCTGT 59.174 45.455 0.00 0.00 0.00 4.00
244 245 3.182967 GAGCGTATTCTGAAGTCCTGTG 58.817 50.000 0.00 0.00 0.00 3.66
245 246 2.826128 AGCGTATTCTGAAGTCCTGTGA 59.174 45.455 0.00 0.00 0.00 3.58
246 247 3.449018 AGCGTATTCTGAAGTCCTGTGAT 59.551 43.478 0.00 0.00 0.00 3.06
247 248 3.799420 GCGTATTCTGAAGTCCTGTGATC 59.201 47.826 0.00 0.00 0.00 2.92
248 249 4.038361 CGTATTCTGAAGTCCTGTGATCG 58.962 47.826 0.00 0.00 0.00 3.69
249 250 4.438880 CGTATTCTGAAGTCCTGTGATCGT 60.439 45.833 0.00 0.00 0.00 3.73
250 251 5.220796 CGTATTCTGAAGTCCTGTGATCGTA 60.221 44.000 0.00 0.00 0.00 3.43
251 252 5.860941 ATTCTGAAGTCCTGTGATCGTAT 57.139 39.130 0.00 0.00 0.00 3.06
252 253 5.661056 TTCTGAAGTCCTGTGATCGTATT 57.339 39.130 0.00 0.00 0.00 1.89
253 254 6.769134 TTCTGAAGTCCTGTGATCGTATTA 57.231 37.500 0.00 0.00 0.00 0.98
254 255 6.132791 TCTGAAGTCCTGTGATCGTATTAC 57.867 41.667 0.00 0.00 0.00 1.89
255 256 4.916870 TGAAGTCCTGTGATCGTATTACG 58.083 43.478 9.95 9.95 44.19 3.18
256 257 3.351020 AGTCCTGTGATCGTATTACGC 57.649 47.619 11.33 0.00 42.21 4.42
257 258 2.950309 AGTCCTGTGATCGTATTACGCT 59.050 45.455 11.33 1.46 42.21 5.07
258 259 3.380637 AGTCCTGTGATCGTATTACGCTT 59.619 43.478 11.33 1.58 42.21 4.68
259 260 4.110482 GTCCTGTGATCGTATTACGCTTT 58.890 43.478 11.33 0.00 42.21 3.51
260 261 4.565564 GTCCTGTGATCGTATTACGCTTTT 59.434 41.667 11.33 0.00 42.21 2.27
261 262 5.063060 GTCCTGTGATCGTATTACGCTTTTT 59.937 40.000 11.33 0.00 42.21 1.94
262 263 5.062934 TCCTGTGATCGTATTACGCTTTTTG 59.937 40.000 11.33 1.29 42.21 2.44
263 264 4.643953 TGTGATCGTATTACGCTTTTTGC 58.356 39.130 11.33 0.00 42.21 3.68
264 265 4.390603 TGTGATCGTATTACGCTTTTTGCT 59.609 37.500 11.33 0.00 42.21 3.91
265 266 5.106869 TGTGATCGTATTACGCTTTTTGCTT 60.107 36.000 11.33 0.00 42.21 3.91
266 267 5.225129 GTGATCGTATTACGCTTTTTGCTTG 59.775 40.000 11.33 0.00 42.21 4.01
267 268 4.994220 TCGTATTACGCTTTTTGCTTGA 57.006 36.364 11.33 0.00 42.21 3.02
268 269 5.345609 TCGTATTACGCTTTTTGCTTGAA 57.654 34.783 11.33 0.00 42.21 2.69
269 270 5.749620 TCGTATTACGCTTTTTGCTTGAAA 58.250 33.333 11.33 0.00 42.21 2.69
270 271 6.375377 TCGTATTACGCTTTTTGCTTGAAAT 58.625 32.000 11.33 0.00 42.21 2.17
271 272 7.519843 TCGTATTACGCTTTTTGCTTGAAATA 58.480 30.769 11.33 0.00 42.21 1.40
272 273 7.479291 TCGTATTACGCTTTTTGCTTGAAATAC 59.521 33.333 11.33 0.00 42.21 1.89
273 274 7.269511 CGTATTACGCTTTTTGCTTGAAATACA 59.730 33.333 2.88 0.00 40.11 2.29
274 275 6.741448 TTACGCTTTTTGCTTGAAATACAC 57.259 33.333 0.00 0.00 40.11 2.90
275 276 4.932146 ACGCTTTTTGCTTGAAATACACT 58.068 34.783 0.00 0.00 40.11 3.55
276 277 4.739716 ACGCTTTTTGCTTGAAATACACTG 59.260 37.500 0.00 0.00 40.11 3.66
277 278 4.975502 CGCTTTTTGCTTGAAATACACTGA 59.024 37.500 0.00 0.00 40.11 3.41
278 279 5.108254 CGCTTTTTGCTTGAAATACACTGAC 60.108 40.000 0.00 0.00 40.11 3.51
279 280 5.175673 GCTTTTTGCTTGAAATACACTGACC 59.824 40.000 0.00 0.00 38.95 4.02
280 281 4.481930 TTTGCTTGAAATACACTGACCG 57.518 40.909 0.00 0.00 0.00 4.79
281 282 1.804151 TGCTTGAAATACACTGACCGC 59.196 47.619 0.00 0.00 0.00 5.68
282 283 1.130561 GCTTGAAATACACTGACCGCC 59.869 52.381 0.00 0.00 0.00 6.13
283 284 2.422597 CTTGAAATACACTGACCGCCA 58.577 47.619 0.00 0.00 0.00 5.69
293 294 1.808411 CTGACCGCCAGTGTATTTGT 58.192 50.000 0.00 0.00 38.10 2.83
294 295 1.732259 CTGACCGCCAGTGTATTTGTC 59.268 52.381 0.00 0.00 38.10 3.18
295 296 1.346395 TGACCGCCAGTGTATTTGTCT 59.654 47.619 0.00 0.00 0.00 3.41
296 297 2.000447 GACCGCCAGTGTATTTGTCTC 59.000 52.381 0.00 0.00 0.00 3.36
297 298 1.623811 ACCGCCAGTGTATTTGTCTCT 59.376 47.619 0.00 0.00 0.00 3.10
298 299 2.038557 ACCGCCAGTGTATTTGTCTCTT 59.961 45.455 0.00 0.00 0.00 2.85
299 300 2.673368 CCGCCAGTGTATTTGTCTCTTC 59.327 50.000 0.00 0.00 0.00 2.87
300 301 3.589988 CGCCAGTGTATTTGTCTCTTCT 58.410 45.455 0.00 0.00 0.00 2.85
301 302 3.614616 CGCCAGTGTATTTGTCTCTTCTC 59.385 47.826 0.00 0.00 0.00 2.87
302 303 4.619394 CGCCAGTGTATTTGTCTCTTCTCT 60.619 45.833 0.00 0.00 0.00 3.10
303 304 4.867608 GCCAGTGTATTTGTCTCTTCTCTC 59.132 45.833 0.00 0.00 0.00 3.20
304 305 5.098893 CCAGTGTATTTGTCTCTTCTCTCG 58.901 45.833 0.00 0.00 0.00 4.04
305 306 4.560819 CAGTGTATTTGTCTCTTCTCTCGC 59.439 45.833 0.00 0.00 0.00 5.03
306 307 4.461081 AGTGTATTTGTCTCTTCTCTCGCT 59.539 41.667 0.00 0.00 0.00 4.93
307 308 4.796312 GTGTATTTGTCTCTTCTCTCGCTC 59.204 45.833 0.00 0.00 0.00 5.03
308 309 4.702612 TGTATTTGTCTCTTCTCTCGCTCT 59.297 41.667 0.00 0.00 0.00 4.09
309 310 3.840890 TTTGTCTCTTCTCTCGCTCTC 57.159 47.619 0.00 0.00 0.00 3.20
310 311 1.745232 TGTCTCTTCTCTCGCTCTCC 58.255 55.000 0.00 0.00 0.00 3.71
311 312 1.021968 GTCTCTTCTCTCGCTCTCCC 58.978 60.000 0.00 0.00 0.00 4.30
312 313 0.916086 TCTCTTCTCTCGCTCTCCCT 59.084 55.000 0.00 0.00 0.00 4.20
313 314 1.024271 CTCTTCTCTCGCTCTCCCTG 58.976 60.000 0.00 0.00 0.00 4.45
314 315 1.034838 TCTTCTCTCGCTCTCCCTGC 61.035 60.000 0.00 0.00 0.00 4.85
336 337 2.813908 CCGAGTAGGCCAACGTGC 60.814 66.667 5.01 0.00 0.00 5.34
344 345 2.032071 GCCAACGTGCCAGTACCT 59.968 61.111 0.00 0.00 0.00 3.08
345 346 1.294138 GCCAACGTGCCAGTACCTA 59.706 57.895 0.00 0.00 0.00 3.08
346 347 0.320946 GCCAACGTGCCAGTACCTAA 60.321 55.000 0.00 0.00 0.00 2.69
347 348 1.878948 GCCAACGTGCCAGTACCTAAA 60.879 52.381 0.00 0.00 0.00 1.85
348 349 2.706890 CCAACGTGCCAGTACCTAAAT 58.293 47.619 0.00 0.00 0.00 1.40
349 350 2.418628 CCAACGTGCCAGTACCTAAATG 59.581 50.000 0.00 0.00 0.00 2.32
350 351 2.396590 ACGTGCCAGTACCTAAATGG 57.603 50.000 0.00 0.00 42.93 3.16
351 352 1.065709 ACGTGCCAGTACCTAAATGGG 60.066 52.381 0.00 0.00 41.11 4.00
352 353 1.389555 GTGCCAGTACCTAAATGGGC 58.610 55.000 0.00 0.00 41.11 5.36
353 354 1.064685 GTGCCAGTACCTAAATGGGCT 60.065 52.381 0.00 0.00 41.86 5.19
354 355 1.211949 TGCCAGTACCTAAATGGGCTC 59.788 52.381 0.00 0.00 41.86 4.70
355 356 1.211949 GCCAGTACCTAAATGGGCTCA 59.788 52.381 0.00 0.00 41.11 4.26
356 357 2.919228 CCAGTACCTAAATGGGCTCAC 58.081 52.381 0.00 0.00 41.11 3.51
357 358 2.238646 CCAGTACCTAAATGGGCTCACA 59.761 50.000 0.00 0.00 41.11 3.58
358 359 3.270877 CAGTACCTAAATGGGCTCACAC 58.729 50.000 0.00 0.00 41.11 3.82
359 360 2.238898 AGTACCTAAATGGGCTCACACC 59.761 50.000 0.00 0.00 41.11 4.16
360 361 1.072266 ACCTAAATGGGCTCACACCA 58.928 50.000 0.00 0.00 43.22 4.17
361 362 1.271926 ACCTAAATGGGCTCACACCAC 60.272 52.381 0.00 0.00 41.58 4.16
362 363 1.463674 CTAAATGGGCTCACACCACC 58.536 55.000 0.00 0.00 41.58 4.61
363 364 0.039035 TAAATGGGCTCACACCACCC 59.961 55.000 0.00 0.00 41.58 4.61
364 365 2.730129 AAATGGGCTCACACCACCCC 62.730 60.000 0.00 0.00 43.54 4.95
366 367 3.661648 GGGCTCACACCACCCCAT 61.662 66.667 0.00 0.00 37.70 4.00
367 368 2.440599 GGCTCACACCACCCCATT 59.559 61.111 0.00 0.00 0.00 3.16
368 369 1.688811 GGCTCACACCACCCCATTA 59.311 57.895 0.00 0.00 0.00 1.90
369 370 0.258774 GGCTCACACCACCCCATTAT 59.741 55.000 0.00 0.00 0.00 1.28
370 371 1.341976 GGCTCACACCACCCCATTATT 60.342 52.381 0.00 0.00 0.00 1.40
371 372 1.750778 GCTCACACCACCCCATTATTG 59.249 52.381 0.00 0.00 0.00 1.90
372 373 1.750778 CTCACACCACCCCATTATTGC 59.249 52.381 0.00 0.00 0.00 3.56
373 374 0.823460 CACACCACCCCATTATTGCC 59.177 55.000 0.00 0.00 0.00 4.52
374 375 0.682855 ACACCACCCCATTATTGCCG 60.683 55.000 0.00 0.00 0.00 5.69
375 376 1.756561 ACCACCCCATTATTGCCGC 60.757 57.895 0.00 0.00 0.00 6.53
376 377 1.756172 CCACCCCATTATTGCCGCA 60.756 57.895 0.00 0.00 0.00 5.69
377 378 1.437160 CACCCCATTATTGCCGCAC 59.563 57.895 0.00 0.00 0.00 5.34
378 379 1.037030 CACCCCATTATTGCCGCACT 61.037 55.000 0.00 0.00 0.00 4.40
379 380 1.037030 ACCCCATTATTGCCGCACTG 61.037 55.000 0.00 0.00 0.00 3.66
380 381 1.735360 CCCATTATTGCCGCACTGG 59.265 57.895 0.00 0.00 42.50 4.00
381 382 1.037030 CCCATTATTGCCGCACTGGT 61.037 55.000 0.00 0.00 41.21 4.00
382 383 0.817013 CCATTATTGCCGCACTGGTT 59.183 50.000 0.00 0.00 41.21 3.67
383 384 1.204467 CCATTATTGCCGCACTGGTTT 59.796 47.619 0.00 0.00 41.21 3.27
384 385 2.529151 CATTATTGCCGCACTGGTTTC 58.471 47.619 0.00 0.00 41.21 2.78
385 386 0.519519 TTATTGCCGCACTGGTTTCG 59.480 50.000 0.00 0.00 41.21 3.46
386 387 1.917782 TATTGCCGCACTGGTTTCGC 61.918 55.000 0.00 0.00 41.21 4.70
388 389 3.959975 GCCGCACTGGTTTCGCAA 61.960 61.111 0.00 0.00 41.21 4.85
389 390 2.252260 CCGCACTGGTTTCGCAAG 59.748 61.111 0.00 0.00 0.00 4.01
400 401 3.637714 TCGCAAGACCGAACAAGC 58.362 55.556 0.00 0.00 45.01 4.01
401 402 1.227409 TCGCAAGACCGAACAAGCA 60.227 52.632 0.00 0.00 45.01 3.91
402 403 0.602638 TCGCAAGACCGAACAAGCAT 60.603 50.000 0.00 0.00 45.01 3.79
403 404 0.238289 CGCAAGACCGAACAAGCATT 59.762 50.000 0.00 0.00 43.02 3.56
404 405 1.725931 CGCAAGACCGAACAAGCATTC 60.726 52.381 0.00 0.00 43.02 2.67
405 406 1.266718 GCAAGACCGAACAAGCATTCA 59.733 47.619 0.00 0.00 0.00 2.57
406 407 2.918131 GCAAGACCGAACAAGCATTCAC 60.918 50.000 0.00 0.00 0.00 3.18
407 408 1.148310 AGACCGAACAAGCATTCACG 58.852 50.000 0.00 0.00 0.00 4.35
408 409 0.865769 GACCGAACAAGCATTCACGT 59.134 50.000 0.00 0.00 0.00 4.49
409 410 0.865769 ACCGAACAAGCATTCACGTC 59.134 50.000 0.00 0.00 0.00 4.34
410 411 1.148310 CCGAACAAGCATTCACGTCT 58.852 50.000 0.00 0.00 0.00 4.18
411 412 2.288579 ACCGAACAAGCATTCACGTCTA 60.289 45.455 0.00 0.00 0.00 2.59
412 413 2.092211 CCGAACAAGCATTCACGTCTAC 59.908 50.000 0.00 0.00 0.00 2.59
413 414 2.092211 CGAACAAGCATTCACGTCTACC 59.908 50.000 0.00 0.00 0.00 3.18
414 415 2.831685 ACAAGCATTCACGTCTACCA 57.168 45.000 0.00 0.00 0.00 3.25
415 416 3.334583 ACAAGCATTCACGTCTACCAT 57.665 42.857 0.00 0.00 0.00 3.55
416 417 4.465632 ACAAGCATTCACGTCTACCATA 57.534 40.909 0.00 0.00 0.00 2.74
417 418 4.181578 ACAAGCATTCACGTCTACCATAC 58.818 43.478 0.00 0.00 0.00 2.39
418 419 4.180817 CAAGCATTCACGTCTACCATACA 58.819 43.478 0.00 0.00 0.00 2.29
419 420 4.046938 AGCATTCACGTCTACCATACAG 57.953 45.455 0.00 0.00 0.00 2.74
420 421 3.699538 AGCATTCACGTCTACCATACAGA 59.300 43.478 0.00 0.00 0.00 3.41
421 422 3.797256 GCATTCACGTCTACCATACAGAC 59.203 47.826 0.00 0.00 39.25 3.51
422 423 4.440250 GCATTCACGTCTACCATACAGACT 60.440 45.833 0.00 0.00 40.26 3.24
423 424 4.959596 TTCACGTCTACCATACAGACTC 57.040 45.455 0.00 0.00 40.26 3.36
424 425 4.217836 TCACGTCTACCATACAGACTCT 57.782 45.455 0.00 0.00 40.26 3.24
425 426 5.349061 TCACGTCTACCATACAGACTCTA 57.651 43.478 0.00 0.00 40.26 2.43
426 427 5.114780 TCACGTCTACCATACAGACTCTAC 58.885 45.833 0.00 0.00 40.26 2.59
427 428 4.874396 CACGTCTACCATACAGACTCTACA 59.126 45.833 0.00 0.00 40.26 2.74
428 429 5.527951 CACGTCTACCATACAGACTCTACAT 59.472 44.000 0.00 0.00 40.26 2.29
429 430 6.704937 CACGTCTACCATACAGACTCTACATA 59.295 42.308 0.00 0.00 40.26 2.29
430 431 7.388224 CACGTCTACCATACAGACTCTACATAT 59.612 40.741 0.00 0.00 40.26 1.78
431 432 8.591940 ACGTCTACCATACAGACTCTACATATA 58.408 37.037 1.46 0.00 40.26 0.86
432 433 9.602568 CGTCTACCATACAGACTCTACATATAT 57.397 37.037 1.46 0.00 40.26 0.86
484 486 7.663043 TTAAACCTTGAATTGGTAGGTGTTT 57.337 32.000 0.00 0.00 41.33 2.83
515 517 2.829023 ACCCTGAAGTCGAAATCCCTA 58.171 47.619 0.00 0.00 0.00 3.53
517 519 3.780850 ACCCTGAAGTCGAAATCCCTATT 59.219 43.478 0.00 0.00 0.00 1.73
527 530 4.224147 TCGAAATCCCTATTGTTCTCACCA 59.776 41.667 0.00 0.00 0.00 4.17
532 535 9.136323 GAAATCCCTATTGTTCTCACCATAAAT 57.864 33.333 0.00 0.00 0.00 1.40
548 551 6.490040 CACCATAAATTAATGAATCCCGGTCT 59.510 38.462 0.00 0.00 0.00 3.85
571 574 7.797123 GTCTAAATCAAACCTTAGTGTCGTTTG 59.203 37.037 5.72 5.72 44.89 2.93
684 688 2.393764 CCCGTCATTTCACTTTGTTGC 58.606 47.619 0.00 0.00 0.00 4.17
687 691 3.490761 CCGTCATTTCACTTTGTTGCCTT 60.491 43.478 0.00 0.00 0.00 4.35
688 692 4.261405 CCGTCATTTCACTTTGTTGCCTTA 60.261 41.667 0.00 0.00 0.00 2.69
749 754 2.126071 CGACGGTTGATCGCCACT 60.126 61.111 6.89 0.00 31.96 4.00
798 803 3.777478 CGCGTCCAAGAAGAAGGTAATA 58.223 45.455 0.00 0.00 0.00 0.98
802 807 4.682589 CGTCCAAGAAGAAGGTAATACCCC 60.683 50.000 5.71 0.00 39.75 4.95
817 822 2.283809 CCCGGATGACCTCCTCCT 59.716 66.667 0.73 0.00 42.47 3.69
818 823 1.834822 CCCGGATGACCTCCTCCTC 60.835 68.421 0.73 0.00 42.47 3.71
833 838 6.381707 ACCTCCTCCTCTGTTCTTTATAGTTC 59.618 42.308 0.00 0.00 0.00 3.01
860 865 0.621609 TTGCGGCATTAGGGTTAGGT 59.378 50.000 2.28 0.00 0.00 3.08
867 872 5.374071 CGGCATTAGGGTTAGGTTTTAGAT 58.626 41.667 0.00 0.00 0.00 1.98
963 991 7.062839 GGTTCATATGCTTTATTTTGTTCGCAA 59.937 33.333 0.00 0.00 34.91 4.85
964 992 7.739022 TCATATGCTTTATTTTGTTCGCAAG 57.261 32.000 0.00 0.00 38.47 4.01
965 993 7.312154 TCATATGCTTTATTTTGTTCGCAAGT 58.688 30.769 0.00 0.00 38.47 3.16
966 994 5.827568 ATGCTTTATTTTGTTCGCAAGTG 57.172 34.783 0.00 0.00 38.47 3.16
968 996 4.975502 TGCTTTATTTTGTTCGCAAGTGAG 59.024 37.500 0.00 0.00 38.47 3.51
969 997 5.212194 GCTTTATTTTGTTCGCAAGTGAGA 58.788 37.500 0.00 0.00 38.47 3.27
970 998 5.858581 GCTTTATTTTGTTCGCAAGTGAGAT 59.141 36.000 0.00 0.00 38.47 2.75
971 999 6.363357 GCTTTATTTTGTTCGCAAGTGAGATT 59.637 34.615 0.00 0.00 38.47 2.40
972 1000 7.096065 GCTTTATTTTGTTCGCAAGTGAGATTT 60.096 33.333 0.00 0.00 38.47 2.17
973 1001 8.641499 TTTATTTTGTTCGCAAGTGAGATTTT 57.359 26.923 0.00 0.00 38.47 1.82
974 1002 5.947503 TTTTGTTCGCAAGTGAGATTTTG 57.052 34.783 0.00 0.00 38.47 2.44
975 1003 4.630894 TTGTTCGCAAGTGAGATTTTGT 57.369 36.364 0.00 0.00 39.48 2.83
976 1004 3.951306 TGTTCGCAAGTGAGATTTTGTG 58.049 40.909 0.00 0.00 36.42 3.33
977 1005 3.243035 TGTTCGCAAGTGAGATTTTGTGG 60.243 43.478 0.00 0.00 35.93 4.17
978 1006 1.879380 TCGCAAGTGAGATTTTGTGGG 59.121 47.619 0.00 0.00 35.93 4.61
979 1007 1.608590 CGCAAGTGAGATTTTGTGGGT 59.391 47.619 0.00 0.00 32.61 4.51
980 1008 2.811431 CGCAAGTGAGATTTTGTGGGTA 59.189 45.455 0.00 0.00 32.61 3.69
981 1009 3.440173 CGCAAGTGAGATTTTGTGGGTAT 59.560 43.478 0.00 0.00 32.61 2.73
982 1010 4.672542 CGCAAGTGAGATTTTGTGGGTATG 60.673 45.833 0.00 0.00 32.61 2.39
983 1011 4.218417 GCAAGTGAGATTTTGTGGGTATGT 59.782 41.667 0.00 0.00 0.00 2.29
986 1014 7.523052 GCAAGTGAGATTTTGTGGGTATGTTTA 60.523 37.037 0.00 0.00 0.00 2.01
1025 1054 3.813166 GACCCAAGTGAGATTTTGAACGA 59.187 43.478 0.00 0.00 0.00 3.85
1094 1123 4.287326 GGACTATATTGGGGGAGAAGAAGG 59.713 50.000 0.00 0.00 0.00 3.46
1102 1131 1.004745 GGGGAGAAGAAGGCATGTCAA 59.995 52.381 0.00 0.00 0.00 3.18
1115 1144 2.686915 GCATGTCAAAGATTGAGAGGGG 59.313 50.000 4.47 0.00 41.01 4.79
1119 1148 5.779241 TGTCAAAGATTGAGAGGGGTAAT 57.221 39.130 0.00 0.00 41.01 1.89
1144 1173 2.037772 TCTCTGCAGGAAGTGAAAGGTC 59.962 50.000 15.13 0.00 0.00 3.85
1150 1179 3.935828 GCAGGAAGTGAAAGGTCATCTAC 59.064 47.826 0.00 0.00 35.80 2.59
1155 3289 4.705337 AGTGAAAGGTCATCTACGAGAC 57.295 45.455 0.00 0.00 35.80 3.36
1217 3352 5.163364 TGCTTCCTAGGAAAGAGCTTATCAG 60.163 44.000 26.74 13.07 33.34 2.90
1255 3394 1.908344 TGATGACATTGGGTGTGTGG 58.092 50.000 0.00 0.00 42.36 4.17
1332 3471 5.546887 TCATGGAGAGGAAGATAGCAATGAT 59.453 40.000 0.00 0.00 0.00 2.45
1338 3477 5.779260 AGAGGAAGATAGCAATGATAGCAGA 59.221 40.000 0.00 0.00 0.00 4.26
1373 3515 7.088589 ACTTTGAGGATGAAATAATGGAACG 57.911 36.000 0.00 0.00 0.00 3.95
1383 3525 5.584649 TGAAATAATGGAACGGAGTGATGAC 59.415 40.000 0.00 0.00 45.00 3.06
1394 3539 2.093973 GGAGTGATGACGAACCAGATGT 60.094 50.000 0.00 0.00 0.00 3.06
1499 3722 0.333993 AGCCCCATGAAGCAGACAAT 59.666 50.000 9.24 0.00 0.00 2.71
1537 3772 8.886719 GACAAGTAGATGTTGATCATGAAATGA 58.113 33.333 0.00 0.00 45.78 2.57
1632 3868 2.029623 GCTTCAGGCCATGTCAATGAT 58.970 47.619 5.01 0.00 35.67 2.45
1718 3957 6.994496 ACTGAATACATTGGACATACTGATGG 59.006 38.462 0.00 0.00 37.39 3.51
1721 3960 3.966979 ACATTGGACATACTGATGGCAA 58.033 40.909 0.00 0.00 43.74 4.52
1722 3961 3.696051 ACATTGGACATACTGATGGCAAC 59.304 43.478 0.00 0.00 43.74 4.17
1734 3973 2.124278 GGCAACGGGGAGGATTCC 60.124 66.667 0.00 0.00 43.23 3.01
1744 3983 1.003233 GGGAGGATTCCGAAGTTGTGT 59.997 52.381 0.00 0.00 45.04 3.72
1777 4016 7.674471 AGACATGCTAGGAAGTTTAAGAAAC 57.326 36.000 0.00 0.00 41.69 2.78
1800 4039 1.956869 TGAGGGAATCCAAGAGCTGA 58.043 50.000 0.09 0.00 34.83 4.26
1824 4063 1.273838 TGGAAGGGATGCTACAGGTCT 60.274 52.381 0.00 0.00 0.00 3.85
1828 4067 4.471548 GAAGGGATGCTACAGGTCTAGTA 58.528 47.826 0.00 0.00 0.00 1.82
2017 4256 6.259608 CACATTTTGCTTTGACCATGGTTTTA 59.740 34.615 20.85 6.07 0.00 1.52
2101 4340 5.618056 TCTTGTTCATGAAATCTGAGTGC 57.382 39.130 10.35 0.00 0.00 4.40
2115 4354 2.952978 CTGAGTGCGATAGAGTAAGGGT 59.047 50.000 0.00 0.00 39.76 4.34
2322 4564 6.766944 TGGAAAATTGACAACATGAAAGCAAT 59.233 30.769 0.00 1.36 0.00 3.56
2323 4565 7.930325 TGGAAAATTGACAACATGAAAGCAATA 59.070 29.630 0.00 0.00 0.00 1.90
2460 4713 4.164843 ACCAACTTGAACTGCTAAGGAA 57.835 40.909 0.00 0.00 0.00 3.36
2477 4730 2.441750 AGGAACAACCCTAGAAGCACAA 59.558 45.455 0.00 0.00 40.05 3.33
2534 4792 6.371548 GTGTGTTCCAAAGCTTCTATGTATGA 59.628 38.462 0.00 0.00 0.00 2.15
2607 4865 5.869344 GGCCTTGATGGATGTTTCTTTAAAC 59.131 40.000 0.00 0.00 40.95 2.01
2677 4935 9.160496 CAATAATCAAATGTATCCTCTAGCCTC 57.840 37.037 0.00 0.00 0.00 4.70
2698 4956 5.120830 CCTCGGTTGTAGTTGAGAATGAAAG 59.879 44.000 0.00 0.00 0.00 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.227853 ACAAGACTCCAACCCGTGC 60.228 57.895 0.00 0.00 0.00 5.34
2 3 0.944311 CGACAAGACTCCAACCCGTG 60.944 60.000 0.00 0.00 0.00 4.94
3 4 1.366366 CGACAAGACTCCAACCCGT 59.634 57.895 0.00 0.00 0.00 5.28
4 5 2.027625 GCGACAAGACTCCAACCCG 61.028 63.158 0.00 0.00 0.00 5.28
6 7 1.228657 GGTGCGACAAGACTCCAACC 61.229 60.000 0.00 0.00 0.00 3.77
7 8 1.228657 GGGTGCGACAAGACTCCAAC 61.229 60.000 0.00 0.00 0.00 3.77
8 9 1.070786 GGGTGCGACAAGACTCCAA 59.929 57.895 0.00 0.00 0.00 3.53
9 10 2.741092 GGGTGCGACAAGACTCCA 59.259 61.111 0.00 0.00 0.00 3.86
10 11 2.432628 CGGGTGCGACAAGACTCC 60.433 66.667 0.00 0.00 0.00 3.85
11 12 3.112709 GCGGGTGCGACAAGACTC 61.113 66.667 0.00 0.00 0.00 3.36
27 28 0.386731 ACACAAATTTACGCAGGCGC 60.387 50.000 14.32 0.00 44.19 6.53
28 29 2.044888 AACACAAATTTACGCAGGCG 57.955 45.000 12.71 12.71 46.03 5.52
29 30 5.399013 AGATAAACACAAATTTACGCAGGC 58.601 37.500 0.00 0.00 0.00 4.85
30 31 8.234546 AGTAAGATAAACACAAATTTACGCAGG 58.765 33.333 0.00 0.00 0.00 4.85
31 32 9.607285 AAGTAAGATAAACACAAATTTACGCAG 57.393 29.630 0.00 0.00 0.00 5.18
32 33 9.953697 AAAGTAAGATAAACACAAATTTACGCA 57.046 25.926 0.00 0.00 0.00 5.24
49 50 9.660180 GTCAGTTCATAGAGGAAAAAGTAAGAT 57.340 33.333 0.00 0.00 0.00 2.40
50 51 8.647796 TGTCAGTTCATAGAGGAAAAAGTAAGA 58.352 33.333 0.00 0.00 0.00 2.10
51 52 8.833231 TGTCAGTTCATAGAGGAAAAAGTAAG 57.167 34.615 0.00 0.00 0.00 2.34
52 53 7.878127 CCTGTCAGTTCATAGAGGAAAAAGTAA 59.122 37.037 0.00 0.00 0.00 2.24
53 54 7.016268 ACCTGTCAGTTCATAGAGGAAAAAGTA 59.984 37.037 0.00 0.00 30.82 2.24
54 55 6.183361 ACCTGTCAGTTCATAGAGGAAAAAGT 60.183 38.462 0.00 0.00 30.82 2.66
55 56 6.148480 CACCTGTCAGTTCATAGAGGAAAAAG 59.852 42.308 0.00 0.00 30.82 2.27
56 57 5.997746 CACCTGTCAGTTCATAGAGGAAAAA 59.002 40.000 0.00 0.00 30.82 1.94
57 58 5.513094 CCACCTGTCAGTTCATAGAGGAAAA 60.513 44.000 0.00 0.00 30.82 2.29
58 59 4.020218 CCACCTGTCAGTTCATAGAGGAAA 60.020 45.833 0.00 0.00 30.82 3.13
59 60 3.515502 CCACCTGTCAGTTCATAGAGGAA 59.484 47.826 0.00 0.00 30.82 3.36
60 61 3.099905 CCACCTGTCAGTTCATAGAGGA 58.900 50.000 0.00 0.00 30.82 3.71
61 62 2.169352 CCCACCTGTCAGTTCATAGAGG 59.831 54.545 0.00 0.00 32.50 3.69
62 63 3.099905 TCCCACCTGTCAGTTCATAGAG 58.900 50.000 0.00 0.00 0.00 2.43
63 64 2.832129 GTCCCACCTGTCAGTTCATAGA 59.168 50.000 0.00 0.00 0.00 1.98
64 65 2.093447 GGTCCCACCTGTCAGTTCATAG 60.093 54.545 0.00 0.00 34.73 2.23
65 66 1.906574 GGTCCCACCTGTCAGTTCATA 59.093 52.381 0.00 0.00 34.73 2.15
66 67 0.693049 GGTCCCACCTGTCAGTTCAT 59.307 55.000 0.00 0.00 34.73 2.57
67 68 1.415672 GGGTCCCACCTGTCAGTTCA 61.416 60.000 1.78 0.00 38.64 3.18
68 69 1.375326 GGGTCCCACCTGTCAGTTC 59.625 63.158 1.78 0.00 38.64 3.01
69 70 1.385347 TGGGTCCCACCTGTCAGTT 60.385 57.895 6.47 0.00 38.64 3.16
70 71 2.288992 TGGGTCCCACCTGTCAGT 59.711 61.111 6.47 0.00 38.64 3.41
79 80 0.112218 CATGTTCCTTGTGGGTCCCA 59.888 55.000 6.47 6.47 36.25 4.37
80 81 0.611896 CCATGTTCCTTGTGGGTCCC 60.612 60.000 0.00 0.00 36.25 4.46
81 82 0.112412 ACCATGTTCCTTGTGGGTCC 59.888 55.000 0.00 0.00 37.33 4.46
82 83 1.202879 TGACCATGTTCCTTGTGGGTC 60.203 52.381 0.00 0.00 43.88 4.46
83 84 0.850100 TGACCATGTTCCTTGTGGGT 59.150 50.000 0.00 0.00 37.33 4.51
84 85 1.993956 TTGACCATGTTCCTTGTGGG 58.006 50.000 0.00 0.00 37.33 4.61
85 86 4.605640 AAATTGACCATGTTCCTTGTGG 57.394 40.909 0.00 0.00 38.96 4.17
86 87 5.925969 GGTTAAATTGACCATGTTCCTTGTG 59.074 40.000 1.74 0.00 37.14 3.33
87 88 5.600484 TGGTTAAATTGACCATGTTCCTTGT 59.400 36.000 5.45 0.00 42.06 3.16
88 89 6.095432 TGGTTAAATTGACCATGTTCCTTG 57.905 37.500 5.45 0.00 42.06 3.61
89 90 5.838521 ACTGGTTAAATTGACCATGTTCCTT 59.161 36.000 10.13 0.00 45.56 3.36
90 91 5.393866 ACTGGTTAAATTGACCATGTTCCT 58.606 37.500 10.13 0.00 45.56 3.36
91 92 5.242838 TGACTGGTTAAATTGACCATGTTCC 59.757 40.000 10.13 2.07 45.56 3.62
92 93 6.325919 TGACTGGTTAAATTGACCATGTTC 57.674 37.500 10.13 7.92 45.56 3.18
93 94 6.097554 TGTTGACTGGTTAAATTGACCATGTT 59.902 34.615 10.13 0.00 45.56 2.71
94 95 5.596361 TGTTGACTGGTTAAATTGACCATGT 59.404 36.000 10.13 10.16 45.56 3.21
95 96 6.083098 TGTTGACTGGTTAAATTGACCATG 57.917 37.500 10.13 7.32 45.56 3.66
96 97 6.916360 ATGTTGACTGGTTAAATTGACCAT 57.084 33.333 10.13 1.41 45.56 3.55
97 98 7.001674 ACTATGTTGACTGGTTAAATTGACCA 58.998 34.615 9.34 9.34 44.59 4.02
98 99 7.305474 CACTATGTTGACTGGTTAAATTGACC 58.695 38.462 0.00 0.00 37.69 4.02
99 100 6.801862 GCACTATGTTGACTGGTTAAATTGAC 59.198 38.462 0.00 0.00 0.00 3.18
100 101 6.072175 GGCACTATGTTGACTGGTTAAATTGA 60.072 38.462 0.00 0.00 0.00 2.57
101 102 6.092748 GGCACTATGTTGACTGGTTAAATTG 58.907 40.000 0.00 0.00 0.00 2.32
102 103 5.772672 TGGCACTATGTTGACTGGTTAAATT 59.227 36.000 0.00 0.00 0.00 1.82
103 104 5.183140 GTGGCACTATGTTGACTGGTTAAAT 59.817 40.000 11.13 0.00 0.00 1.40
104 105 4.517453 GTGGCACTATGTTGACTGGTTAAA 59.483 41.667 11.13 0.00 0.00 1.52
105 106 4.069304 GTGGCACTATGTTGACTGGTTAA 58.931 43.478 11.13 0.00 0.00 2.01
106 107 3.071747 TGTGGCACTATGTTGACTGGTTA 59.928 43.478 19.83 0.00 0.00 2.85
107 108 2.158682 TGTGGCACTATGTTGACTGGTT 60.159 45.455 19.83 0.00 0.00 3.67
108 109 1.419762 TGTGGCACTATGTTGACTGGT 59.580 47.619 19.83 0.00 0.00 4.00
109 110 1.806542 GTGTGGCACTATGTTGACTGG 59.193 52.381 19.83 0.00 0.00 4.00
110 111 2.481568 CTGTGTGGCACTATGTTGACTG 59.518 50.000 19.83 6.83 35.11 3.51
111 112 2.368548 TCTGTGTGGCACTATGTTGACT 59.631 45.455 19.83 0.00 35.11 3.41
112 113 2.480419 GTCTGTGTGGCACTATGTTGAC 59.520 50.000 19.83 13.41 35.11 3.18
113 114 2.368548 AGTCTGTGTGGCACTATGTTGA 59.631 45.455 19.83 5.81 35.11 3.18
114 115 2.771089 AGTCTGTGTGGCACTATGTTG 58.229 47.619 19.83 3.55 35.11 3.33
115 116 4.826274 ATAGTCTGTGTGGCACTATGTT 57.174 40.909 19.83 3.02 33.05 2.71
116 117 4.826274 AATAGTCTGTGTGGCACTATGT 57.174 40.909 19.83 1.33 34.28 2.29
117 118 4.333649 CCAAATAGTCTGTGTGGCACTATG 59.666 45.833 19.83 8.44 34.28 2.23
118 119 4.517285 CCAAATAGTCTGTGTGGCACTAT 58.483 43.478 19.83 4.10 35.29 2.12
119 120 3.937814 CCAAATAGTCTGTGTGGCACTA 58.062 45.455 19.83 7.08 35.11 2.74
120 121 2.783135 CCAAATAGTCTGTGTGGCACT 58.217 47.619 19.83 0.00 35.11 4.40
124 125 1.086696 CGGCCAAATAGTCTGTGTGG 58.913 55.000 2.24 1.33 0.00 4.17
125 126 1.086696 CCGGCCAAATAGTCTGTGTG 58.913 55.000 2.24 0.00 0.00 3.82
126 127 0.690762 ACCGGCCAAATAGTCTGTGT 59.309 50.000 0.00 0.00 0.00 3.72
127 128 1.821216 AACCGGCCAAATAGTCTGTG 58.179 50.000 0.00 0.00 0.00 3.66
128 129 3.244630 TGTTAACCGGCCAAATAGTCTGT 60.245 43.478 0.00 0.00 0.00 3.41
129 130 3.340034 TGTTAACCGGCCAAATAGTCTG 58.660 45.455 0.00 0.00 0.00 3.51
130 131 3.262405 TCTGTTAACCGGCCAAATAGTCT 59.738 43.478 0.00 0.00 0.00 3.24
131 132 3.602483 TCTGTTAACCGGCCAAATAGTC 58.398 45.455 0.00 0.00 0.00 2.59
132 133 3.008704 ACTCTGTTAACCGGCCAAATAGT 59.991 43.478 0.00 0.00 0.00 2.12
133 134 3.374058 CACTCTGTTAACCGGCCAAATAG 59.626 47.826 0.00 1.08 0.00 1.73
134 135 3.340034 CACTCTGTTAACCGGCCAAATA 58.660 45.455 0.00 0.00 0.00 1.40
135 136 2.159382 CACTCTGTTAACCGGCCAAAT 58.841 47.619 0.00 0.00 0.00 2.32
136 137 1.600023 CACTCTGTTAACCGGCCAAA 58.400 50.000 0.00 0.00 0.00 3.28
137 138 0.887387 GCACTCTGTTAACCGGCCAA 60.887 55.000 0.00 0.00 0.00 4.52
138 139 1.302192 GCACTCTGTTAACCGGCCA 60.302 57.895 0.00 0.00 0.00 5.36
139 140 0.887387 TTGCACTCTGTTAACCGGCC 60.887 55.000 0.00 0.00 0.00 6.13
140 141 1.130561 GATTGCACTCTGTTAACCGGC 59.869 52.381 0.00 0.53 0.00 6.13
141 142 2.416547 CAGATTGCACTCTGTTAACCGG 59.583 50.000 22.37 0.00 38.27 5.28
142 143 3.325870 TCAGATTGCACTCTGTTAACCG 58.674 45.455 27.38 6.49 42.68 4.44
143 144 4.437930 GCATCAGATTGCACTCTGTTAACC 60.438 45.833 27.38 12.90 42.68 2.85
144 145 4.394300 AGCATCAGATTGCACTCTGTTAAC 59.606 41.667 27.38 17.59 45.23 2.01
145 146 4.393990 CAGCATCAGATTGCACTCTGTTAA 59.606 41.667 27.38 13.56 45.23 2.01
146 147 3.937079 CAGCATCAGATTGCACTCTGTTA 59.063 43.478 27.38 14.19 45.23 2.41
147 148 2.747989 CAGCATCAGATTGCACTCTGTT 59.252 45.455 27.38 19.43 45.23 3.16
148 149 2.027469 TCAGCATCAGATTGCACTCTGT 60.027 45.455 27.38 15.60 45.23 3.41
149 150 2.629051 TCAGCATCAGATTGCACTCTG 58.371 47.619 24.13 24.13 45.23 3.35
150 151 3.008330 GTTCAGCATCAGATTGCACTCT 58.992 45.455 0.00 0.00 45.23 3.24
151 152 2.222976 CGTTCAGCATCAGATTGCACTC 60.223 50.000 0.00 0.00 45.23 3.51
152 153 1.736126 CGTTCAGCATCAGATTGCACT 59.264 47.619 0.00 0.00 45.23 4.40
153 154 1.202110 CCGTTCAGCATCAGATTGCAC 60.202 52.381 0.00 0.00 45.23 4.57
154 155 1.089112 CCGTTCAGCATCAGATTGCA 58.911 50.000 7.35 0.00 45.23 4.08
155 156 1.089920 ACCGTTCAGCATCAGATTGC 58.910 50.000 0.00 0.00 43.09 3.56
156 157 2.349590 TCACCGTTCAGCATCAGATTG 58.650 47.619 0.00 0.00 0.00 2.67
157 158 2.625737 CTCACCGTTCAGCATCAGATT 58.374 47.619 0.00 0.00 0.00 2.40
158 159 1.741732 GCTCACCGTTCAGCATCAGAT 60.742 52.381 0.00 0.00 35.56 2.90
159 160 0.390340 GCTCACCGTTCAGCATCAGA 60.390 55.000 0.00 0.00 35.56 3.27
160 161 0.671472 TGCTCACCGTTCAGCATCAG 60.671 55.000 0.00 0.00 40.80 2.90
161 162 0.250252 TTGCTCACCGTTCAGCATCA 60.250 50.000 3.26 0.00 45.03 3.07
162 163 0.445436 CTTGCTCACCGTTCAGCATC 59.555 55.000 3.26 0.00 45.03 3.91
163 164 0.250467 ACTTGCTCACCGTTCAGCAT 60.250 50.000 3.26 0.00 45.03 3.79
164 165 1.146041 ACTTGCTCACCGTTCAGCA 59.854 52.632 0.00 0.00 44.02 4.41
165 166 0.880278 TCACTTGCTCACCGTTCAGC 60.880 55.000 0.00 0.00 36.08 4.26
166 167 0.861837 GTCACTTGCTCACCGTTCAG 59.138 55.000 0.00 0.00 0.00 3.02
167 168 0.531974 GGTCACTTGCTCACCGTTCA 60.532 55.000 0.00 0.00 0.00 3.18
168 169 1.557443 CGGTCACTTGCTCACCGTTC 61.557 60.000 1.50 0.00 46.58 3.95
169 170 1.594293 CGGTCACTTGCTCACCGTT 60.594 57.895 1.50 0.00 46.58 4.44
170 171 2.029073 CGGTCACTTGCTCACCGT 59.971 61.111 1.50 0.00 46.58 4.83
172 173 2.953466 TATACGGTCACTTGCTCACC 57.047 50.000 0.00 0.00 0.00 4.02
173 174 4.267928 GTGATTATACGGTCACTTGCTCAC 59.732 45.833 0.00 0.00 41.10 3.51
174 175 4.430007 GTGATTATACGGTCACTTGCTCA 58.570 43.478 0.00 0.00 41.10 4.26
175 176 3.802685 GGTGATTATACGGTCACTTGCTC 59.197 47.826 10.30 0.00 43.23 4.26
176 177 3.737047 CGGTGATTATACGGTCACTTGCT 60.737 47.826 10.30 0.00 43.23 3.91
177 178 2.538449 CGGTGATTATACGGTCACTTGC 59.462 50.000 10.30 0.00 43.23 4.01
178 179 3.777478 ACGGTGATTATACGGTCACTTG 58.223 45.455 10.30 7.29 43.23 3.16
179 180 5.581126 TTACGGTGATTATACGGTCACTT 57.419 39.130 10.30 3.66 43.23 3.16
180 181 5.581126 TTTACGGTGATTATACGGTCACT 57.419 39.130 10.30 0.00 43.23 3.41
181 182 5.275881 CGTTTTACGGTGATTATACGGTCAC 60.276 44.000 0.00 0.00 43.02 3.67
182 183 4.797868 CGTTTTACGGTGATTATACGGTCA 59.202 41.667 0.00 0.00 38.08 4.02
183 184 5.301500 CGTTTTACGGTGATTATACGGTC 57.699 43.478 0.00 0.00 38.08 4.79
200 201 8.706035 GCTCATTACGGTCAATATATACGTTTT 58.294 33.333 0.00 0.00 38.79 2.43
201 202 7.061441 CGCTCATTACGGTCAATATATACGTTT 59.939 37.037 0.00 0.00 38.79 3.60
202 203 6.525628 CGCTCATTACGGTCAATATATACGTT 59.474 38.462 0.00 0.00 38.79 3.99
203 204 6.025896 CGCTCATTACGGTCAATATATACGT 58.974 40.000 0.00 0.00 41.10 3.57
204 205 6.025896 ACGCTCATTACGGTCAATATATACG 58.974 40.000 0.00 0.00 34.00 3.06
205 206 9.512435 AATACGCTCATTACGGTCAATATATAC 57.488 33.333 0.00 0.00 34.00 1.47
206 207 9.726232 GAATACGCTCATTACGGTCAATATATA 57.274 33.333 0.00 0.00 34.00 0.86
207 208 8.467598 AGAATACGCTCATTACGGTCAATATAT 58.532 33.333 0.00 0.00 34.00 0.86
208 209 7.753580 CAGAATACGCTCATTACGGTCAATATA 59.246 37.037 0.00 0.00 34.00 0.86
209 210 6.586463 CAGAATACGCTCATTACGGTCAATAT 59.414 38.462 0.00 0.00 34.00 1.28
210 211 5.918576 CAGAATACGCTCATTACGGTCAATA 59.081 40.000 0.00 0.00 34.00 1.90
211 212 4.745125 CAGAATACGCTCATTACGGTCAAT 59.255 41.667 0.00 0.00 34.00 2.57
212 213 4.109766 CAGAATACGCTCATTACGGTCAA 58.890 43.478 0.00 0.00 34.00 3.18
213 214 3.379057 TCAGAATACGCTCATTACGGTCA 59.621 43.478 0.00 0.00 34.00 4.02
214 215 3.961182 TCAGAATACGCTCATTACGGTC 58.039 45.455 0.00 0.00 34.00 4.79
215 216 4.142227 ACTTCAGAATACGCTCATTACGGT 60.142 41.667 0.00 0.00 34.00 4.83
216 217 4.360563 ACTTCAGAATACGCTCATTACGG 58.639 43.478 0.00 0.00 34.00 4.02
217 218 4.441415 GGACTTCAGAATACGCTCATTACG 59.559 45.833 0.00 0.00 0.00 3.18
218 219 5.460419 CAGGACTTCAGAATACGCTCATTAC 59.540 44.000 0.00 0.00 0.00 1.89
219 220 5.127194 ACAGGACTTCAGAATACGCTCATTA 59.873 40.000 0.00 0.00 0.00 1.90
220 221 4.081420 ACAGGACTTCAGAATACGCTCATT 60.081 41.667 0.00 0.00 0.00 2.57
221 222 3.449018 ACAGGACTTCAGAATACGCTCAT 59.551 43.478 0.00 0.00 0.00 2.90
222 223 2.826128 ACAGGACTTCAGAATACGCTCA 59.174 45.455 0.00 0.00 0.00 4.26
223 224 3.119459 TCACAGGACTTCAGAATACGCTC 60.119 47.826 0.00 0.00 0.00 5.03
224 225 2.826128 TCACAGGACTTCAGAATACGCT 59.174 45.455 0.00 0.00 0.00 5.07
225 226 3.232213 TCACAGGACTTCAGAATACGC 57.768 47.619 0.00 0.00 0.00 4.42
226 227 4.038361 CGATCACAGGACTTCAGAATACG 58.962 47.826 0.00 0.00 0.00 3.06
227 228 5.000012 ACGATCACAGGACTTCAGAATAC 58.000 43.478 0.00 0.00 0.00 1.89
228 229 6.961360 ATACGATCACAGGACTTCAGAATA 57.039 37.500 0.00 0.00 0.00 1.75
229 230 5.860941 ATACGATCACAGGACTTCAGAAT 57.139 39.130 0.00 0.00 0.00 2.40
230 231 5.661056 AATACGATCACAGGACTTCAGAA 57.339 39.130 0.00 0.00 0.00 3.02
231 232 5.220796 CGTAATACGATCACAGGACTTCAGA 60.221 44.000 7.05 0.00 46.05 3.27
232 233 4.970611 CGTAATACGATCACAGGACTTCAG 59.029 45.833 7.05 0.00 46.05 3.02
233 234 4.732647 GCGTAATACGATCACAGGACTTCA 60.733 45.833 17.71 0.00 46.05 3.02
234 235 3.729716 GCGTAATACGATCACAGGACTTC 59.270 47.826 17.71 0.00 46.05 3.01
235 236 3.380637 AGCGTAATACGATCACAGGACTT 59.619 43.478 17.71 0.00 46.05 3.01
236 237 2.950309 AGCGTAATACGATCACAGGACT 59.050 45.455 17.71 0.00 46.05 3.85
237 238 3.351020 AGCGTAATACGATCACAGGAC 57.649 47.619 17.71 0.00 46.05 3.85
238 239 4.380841 AAAGCGTAATACGATCACAGGA 57.619 40.909 17.71 0.00 40.37 3.86
239 240 5.255596 CAAAAAGCGTAATACGATCACAGG 58.744 41.667 17.71 0.00 40.37 4.00
240 241 4.723862 GCAAAAAGCGTAATACGATCACAG 59.276 41.667 17.71 3.34 40.37 3.66
241 242 4.643953 GCAAAAAGCGTAATACGATCACA 58.356 39.130 17.71 0.00 40.37 3.58
255 256 5.175673 GGTCAGTGTATTTCAAGCAAAAAGC 59.824 40.000 0.00 0.00 46.19 3.51
256 257 5.399301 CGGTCAGTGTATTTCAAGCAAAAAG 59.601 40.000 0.00 0.00 0.00 2.27
257 258 5.277825 CGGTCAGTGTATTTCAAGCAAAAA 58.722 37.500 0.00 0.00 0.00 1.94
258 259 4.791411 GCGGTCAGTGTATTTCAAGCAAAA 60.791 41.667 0.00 0.00 0.00 2.44
259 260 3.304391 GCGGTCAGTGTATTTCAAGCAAA 60.304 43.478 0.00 0.00 0.00 3.68
260 261 2.225491 GCGGTCAGTGTATTTCAAGCAA 59.775 45.455 0.00 0.00 0.00 3.91
261 262 1.804151 GCGGTCAGTGTATTTCAAGCA 59.196 47.619 0.00 0.00 0.00 3.91
262 263 1.130561 GGCGGTCAGTGTATTTCAAGC 59.869 52.381 0.00 0.00 0.00 4.01
263 264 2.416547 CTGGCGGTCAGTGTATTTCAAG 59.583 50.000 0.34 0.00 38.64 3.02
264 265 2.422597 CTGGCGGTCAGTGTATTTCAA 58.577 47.619 0.34 0.00 38.64 2.69
265 266 2.093306 CTGGCGGTCAGTGTATTTCA 57.907 50.000 0.34 0.00 38.64 2.69
275 276 1.346395 AGACAAATACACTGGCGGTCA 59.654 47.619 0.00 0.00 0.00 4.02
276 277 2.000447 GAGACAAATACACTGGCGGTC 59.000 52.381 0.00 0.00 0.00 4.79
277 278 1.623811 AGAGACAAATACACTGGCGGT 59.376 47.619 0.00 0.00 0.00 5.68
278 279 2.386661 AGAGACAAATACACTGGCGG 57.613 50.000 0.00 0.00 0.00 6.13
279 280 3.589988 AGAAGAGACAAATACACTGGCG 58.410 45.455 0.00 0.00 0.00 5.69
280 281 4.826556 AGAGAAGAGACAAATACACTGGC 58.173 43.478 0.00 0.00 0.00 4.85
281 282 5.098893 CGAGAGAAGAGACAAATACACTGG 58.901 45.833 0.00 0.00 0.00 4.00
282 283 4.560819 GCGAGAGAAGAGACAAATACACTG 59.439 45.833 0.00 0.00 0.00 3.66
283 284 4.461081 AGCGAGAGAAGAGACAAATACACT 59.539 41.667 0.00 0.00 0.00 3.55
284 285 4.739195 AGCGAGAGAAGAGACAAATACAC 58.261 43.478 0.00 0.00 0.00 2.90
285 286 4.702612 AGAGCGAGAGAAGAGACAAATACA 59.297 41.667 0.00 0.00 0.00 2.29
286 287 5.243426 AGAGCGAGAGAAGAGACAAATAC 57.757 43.478 0.00 0.00 0.00 1.89
287 288 4.336993 GGAGAGCGAGAGAAGAGACAAATA 59.663 45.833 0.00 0.00 0.00 1.40
288 289 3.130340 GGAGAGCGAGAGAAGAGACAAAT 59.870 47.826 0.00 0.00 0.00 2.32
289 290 2.490115 GGAGAGCGAGAGAAGAGACAAA 59.510 50.000 0.00 0.00 0.00 2.83
290 291 2.088423 GGAGAGCGAGAGAAGAGACAA 58.912 52.381 0.00 0.00 0.00 3.18
291 292 1.680555 GGGAGAGCGAGAGAAGAGACA 60.681 57.143 0.00 0.00 0.00 3.41
292 293 1.021968 GGGAGAGCGAGAGAAGAGAC 58.978 60.000 0.00 0.00 0.00 3.36
293 294 0.916086 AGGGAGAGCGAGAGAAGAGA 59.084 55.000 0.00 0.00 0.00 3.10
294 295 1.024271 CAGGGAGAGCGAGAGAAGAG 58.976 60.000 0.00 0.00 0.00 2.85
295 296 1.034838 GCAGGGAGAGCGAGAGAAGA 61.035 60.000 0.00 0.00 0.00 2.87
296 297 1.437160 GCAGGGAGAGCGAGAGAAG 59.563 63.158 0.00 0.00 0.00 2.85
297 298 3.609703 GCAGGGAGAGCGAGAGAA 58.390 61.111 0.00 0.00 0.00 2.87
319 320 2.813908 GCACGTTGGCCTACTCGG 60.814 66.667 15.47 5.69 0.00 4.63
327 328 0.320946 TTAGGTACTGGCACGTTGGC 60.321 55.000 0.00 4.92 41.52 4.52
328 329 2.172851 TTTAGGTACTGGCACGTTGG 57.827 50.000 0.00 0.00 41.52 3.77
329 330 2.418628 CCATTTAGGTACTGGCACGTTG 59.581 50.000 0.00 0.00 41.52 4.10
330 331 2.617021 CCCATTTAGGTACTGGCACGTT 60.617 50.000 0.00 0.00 41.52 3.99
331 332 1.065709 CCCATTTAGGTACTGGCACGT 60.066 52.381 0.00 0.00 41.52 4.49
332 333 1.663695 CCCATTTAGGTACTGGCACG 58.336 55.000 0.00 0.00 41.52 5.34
333 334 1.064685 AGCCCATTTAGGTACTGGCAC 60.065 52.381 0.00 0.00 43.88 5.01
334 335 1.211949 GAGCCCATTTAGGTACTGGCA 59.788 52.381 0.00 0.00 43.88 4.92
335 336 1.211949 TGAGCCCATTTAGGTACTGGC 59.788 52.381 0.00 0.00 42.07 4.85
336 337 2.238646 TGTGAGCCCATTTAGGTACTGG 59.761 50.000 0.00 0.00 41.52 4.00
337 338 3.270877 GTGTGAGCCCATTTAGGTACTG 58.729 50.000 0.00 0.00 41.52 2.74
338 339 2.238898 GGTGTGAGCCCATTTAGGTACT 59.761 50.000 0.00 0.00 46.37 2.73
339 340 2.026636 TGGTGTGAGCCCATTTAGGTAC 60.027 50.000 0.00 0.00 34.66 3.34
340 341 2.026636 GTGGTGTGAGCCCATTTAGGTA 60.027 50.000 0.00 0.00 33.76 3.08
341 342 1.072266 TGGTGTGAGCCCATTTAGGT 58.928 50.000 0.00 0.00 34.66 3.08
342 343 1.463674 GTGGTGTGAGCCCATTTAGG 58.536 55.000 0.00 0.00 33.76 2.69
343 344 1.463674 GGTGGTGTGAGCCCATTTAG 58.536 55.000 0.00 0.00 33.76 1.85
344 345 0.039035 GGGTGGTGTGAGCCCATTTA 59.961 55.000 0.00 0.00 41.93 1.40
345 346 1.228862 GGGTGGTGTGAGCCCATTT 60.229 57.895 0.00 0.00 41.93 2.32
346 347 2.440599 GGGTGGTGTGAGCCCATT 59.559 61.111 0.00 0.00 41.93 3.16
350 351 0.258774 ATAATGGGGTGGTGTGAGCC 59.741 55.000 0.00 0.00 0.00 4.70
351 352 1.750778 CAATAATGGGGTGGTGTGAGC 59.249 52.381 0.00 0.00 0.00 4.26
352 353 1.750778 GCAATAATGGGGTGGTGTGAG 59.249 52.381 0.00 0.00 0.00 3.51
353 354 1.618345 GGCAATAATGGGGTGGTGTGA 60.618 52.381 0.00 0.00 0.00 3.58
354 355 0.823460 GGCAATAATGGGGTGGTGTG 59.177 55.000 0.00 0.00 0.00 3.82
355 356 0.682855 CGGCAATAATGGGGTGGTGT 60.683 55.000 0.00 0.00 0.00 4.16
356 357 2.015227 GCGGCAATAATGGGGTGGTG 62.015 60.000 0.00 0.00 0.00 4.17
357 358 1.756561 GCGGCAATAATGGGGTGGT 60.757 57.895 0.00 0.00 0.00 4.16
358 359 1.756172 TGCGGCAATAATGGGGTGG 60.756 57.895 0.00 0.00 0.00 4.61
359 360 1.037030 AGTGCGGCAATAATGGGGTG 61.037 55.000 3.23 0.00 0.00 4.61
360 361 1.037030 CAGTGCGGCAATAATGGGGT 61.037 55.000 3.23 0.00 0.00 4.95
361 362 1.735360 CAGTGCGGCAATAATGGGG 59.265 57.895 3.23 0.00 0.00 4.96
362 363 1.037030 ACCAGTGCGGCAATAATGGG 61.037 55.000 21.44 13.89 39.03 4.00
363 364 0.817013 AACCAGTGCGGCAATAATGG 59.183 50.000 17.96 17.96 39.03 3.16
364 365 2.529151 GAAACCAGTGCGGCAATAATG 58.471 47.619 3.23 1.38 39.03 1.90
365 366 1.132262 CGAAACCAGTGCGGCAATAAT 59.868 47.619 3.23 0.00 39.03 1.28
366 367 0.519519 CGAAACCAGTGCGGCAATAA 59.480 50.000 3.23 0.00 39.03 1.40
367 368 1.917782 GCGAAACCAGTGCGGCAATA 61.918 55.000 3.23 0.00 39.03 1.90
368 369 2.953821 CGAAACCAGTGCGGCAAT 59.046 55.556 3.23 0.00 39.03 3.56
369 370 3.959975 GCGAAACCAGTGCGGCAA 61.960 61.111 3.23 0.00 39.03 4.52
371 372 3.879351 CTTGCGAAACCAGTGCGGC 62.879 63.158 0.00 0.00 39.03 6.53
372 373 2.250939 TCTTGCGAAACCAGTGCGG 61.251 57.895 0.00 0.00 42.50 5.69
373 374 1.082756 GTCTTGCGAAACCAGTGCG 60.083 57.895 0.00 0.00 0.00 5.34
374 375 1.282875 GGTCTTGCGAAACCAGTGC 59.717 57.895 0.00 0.00 35.53 4.40
375 376 0.878523 TCGGTCTTGCGAAACCAGTG 60.879 55.000 0.00 0.00 35.13 3.66
376 377 0.179067 TTCGGTCTTGCGAAACCAGT 60.179 50.000 0.00 0.00 35.13 4.00
377 378 0.234884 GTTCGGTCTTGCGAAACCAG 59.765 55.000 0.00 0.00 35.13 4.00
378 379 0.462225 TGTTCGGTCTTGCGAAACCA 60.462 50.000 0.00 0.00 35.13 3.67
379 380 0.658897 TTGTTCGGTCTTGCGAAACC 59.341 50.000 0.00 0.00 0.00 3.27
380 381 1.920272 GCTTGTTCGGTCTTGCGAAAC 60.920 52.381 0.00 0.00 0.00 2.78
381 382 0.306533 GCTTGTTCGGTCTTGCGAAA 59.693 50.000 0.00 0.00 0.00 3.46
382 383 0.812014 TGCTTGTTCGGTCTTGCGAA 60.812 50.000 0.00 0.00 0.00 4.70
383 384 0.602638 ATGCTTGTTCGGTCTTGCGA 60.603 50.000 0.00 0.00 0.00 5.10
384 385 0.238289 AATGCTTGTTCGGTCTTGCG 59.762 50.000 0.00 0.00 0.00 4.85
385 386 1.266718 TGAATGCTTGTTCGGTCTTGC 59.733 47.619 0.00 0.00 0.00 4.01
386 387 2.662791 CGTGAATGCTTGTTCGGTCTTG 60.663 50.000 0.00 0.00 0.00 3.02
387 388 1.531149 CGTGAATGCTTGTTCGGTCTT 59.469 47.619 0.00 0.00 0.00 3.01
388 389 1.148310 CGTGAATGCTTGTTCGGTCT 58.852 50.000 0.00 0.00 0.00 3.85
389 390 0.865769 ACGTGAATGCTTGTTCGGTC 59.134 50.000 0.00 0.00 0.00 4.79
390 391 0.865769 GACGTGAATGCTTGTTCGGT 59.134 50.000 0.00 0.00 0.00 4.69
391 392 1.148310 AGACGTGAATGCTTGTTCGG 58.852 50.000 0.00 0.00 0.00 4.30
392 393 2.092211 GGTAGACGTGAATGCTTGTTCG 59.908 50.000 0.00 0.00 0.00 3.95
393 394 3.064207 TGGTAGACGTGAATGCTTGTTC 58.936 45.455 0.00 0.00 0.00 3.18
394 395 3.120321 TGGTAGACGTGAATGCTTGTT 57.880 42.857 0.00 0.00 0.00 2.83
395 396 2.831685 TGGTAGACGTGAATGCTTGT 57.168 45.000 0.00 0.00 0.00 3.16
396 397 4.180817 TGTATGGTAGACGTGAATGCTTG 58.819 43.478 0.00 0.00 0.00 4.01
397 398 4.159693 TCTGTATGGTAGACGTGAATGCTT 59.840 41.667 0.00 0.00 0.00 3.91
398 399 3.699538 TCTGTATGGTAGACGTGAATGCT 59.300 43.478 0.00 0.00 0.00 3.79
399 400 3.797256 GTCTGTATGGTAGACGTGAATGC 59.203 47.826 0.00 0.00 35.68 3.56
430 431 8.736244 GGACTTTTTCCTAGCATTTGTAACATA 58.264 33.333 0.00 0.00 41.95 2.29
431 432 7.232534 TGGACTTTTTCCTAGCATTTGTAACAT 59.767 33.333 0.00 0.00 46.10 2.71
432 433 6.547880 TGGACTTTTTCCTAGCATTTGTAACA 59.452 34.615 0.00 0.00 46.10 2.41
433 434 6.977213 TGGACTTTTTCCTAGCATTTGTAAC 58.023 36.000 0.00 0.00 46.10 2.50
434 435 7.775053 ATGGACTTTTTCCTAGCATTTGTAA 57.225 32.000 0.00 0.00 46.10 2.41
435 436 7.775053 AATGGACTTTTTCCTAGCATTTGTA 57.225 32.000 0.00 0.00 46.10 2.41
436 437 6.670695 AATGGACTTTTTCCTAGCATTTGT 57.329 33.333 0.00 0.00 46.10 2.83
437 438 7.967890 AAAATGGACTTTTTCCTAGCATTTG 57.032 32.000 0.00 0.00 46.10 2.32
439 440 9.489084 GTTTAAAATGGACTTTTTCCTAGCATT 57.511 29.630 0.00 0.00 46.10 3.56
440 441 8.094548 GGTTTAAAATGGACTTTTTCCTAGCAT 58.905 33.333 0.00 0.00 46.10 3.79
441 442 7.289084 AGGTTTAAAATGGACTTTTTCCTAGCA 59.711 33.333 0.00 0.00 46.10 3.49
474 476 1.816074 TGATTCGCCAAACACCTACC 58.184 50.000 0.00 0.00 0.00 3.18
484 486 1.202879 ACTTCAGGGTTTGATTCGCCA 60.203 47.619 0.00 0.00 35.27 5.69
517 519 8.912988 GGGATTCATTAATTTATGGTGAGAACA 58.087 33.333 4.70 0.00 0.00 3.18
532 535 7.067737 GGTTTGATTTAGACCGGGATTCATTAA 59.932 37.037 6.32 0.00 0.00 1.40
571 574 0.454452 GTCGGCAATTCTCGTTTGGC 60.454 55.000 0.37 0.37 43.87 4.52
660 664 0.536460 AAAGTGAAATGACGGGCCGT 60.536 50.000 34.81 34.81 45.10 5.68
684 688 0.253327 GAAGGCAGGGGACACTAAGG 59.747 60.000 0.00 0.00 0.00 2.69
687 691 0.617820 GAGGAAGGCAGGGGACACTA 60.618 60.000 0.00 0.00 0.00 2.74
688 692 1.920835 GAGGAAGGCAGGGGACACT 60.921 63.158 0.00 0.00 0.00 3.55
749 754 1.226295 CGTCACTATCGTCGCAGCA 60.226 57.895 0.00 0.00 0.00 4.41
818 823 8.865001 GCAACTACTCTGAACTATAAAGAACAG 58.135 37.037 0.00 0.00 33.88 3.16
833 838 2.205074 CCTAATGCCGCAACTACTCTG 58.795 52.381 0.00 0.00 0.00 3.35
860 865 4.081917 GTCCCCAAATTTGCCGATCTAAAA 60.082 41.667 12.92 0.00 0.00 1.52
867 872 0.322997 ATCGTCCCCAAATTTGCCGA 60.323 50.000 12.92 15.41 0.00 5.54
907 924 3.948196 GCACAAAAATGCAAGCTTTCA 57.052 38.095 0.07 0.07 45.39 2.69
917 934 5.151297 ACCTATTTCCCTGCACAAAAATG 57.849 39.130 5.94 0.00 0.00 2.32
957 985 2.293122 CCCACAAAATCTCACTTGCGAA 59.707 45.455 0.00 0.00 0.00 4.70
963 991 8.650143 AATAAACATACCCACAAAATCTCACT 57.350 30.769 0.00 0.00 0.00 3.41
964 992 9.353999 GAAATAAACATACCCACAAAATCTCAC 57.646 33.333 0.00 0.00 0.00 3.51
965 993 9.083422 TGAAATAAACATACCCACAAAATCTCA 57.917 29.630 0.00 0.00 0.00 3.27
966 994 9.573133 CTGAAATAAACATACCCACAAAATCTC 57.427 33.333 0.00 0.00 0.00 2.75
968 996 9.139174 CACTGAAATAAACATACCCACAAAATC 57.861 33.333 0.00 0.00 0.00 2.17
969 997 8.865090 TCACTGAAATAAACATACCCACAAAAT 58.135 29.630 0.00 0.00 0.00 1.82
970 998 8.239038 TCACTGAAATAAACATACCCACAAAA 57.761 30.769 0.00 0.00 0.00 2.44
971 999 7.825331 TCACTGAAATAAACATACCCACAAA 57.175 32.000 0.00 0.00 0.00 2.83
972 1000 7.825331 TTCACTGAAATAAACATACCCACAA 57.175 32.000 0.00 0.00 0.00 3.33
973 1001 7.825331 TTTCACTGAAATAAACATACCCACA 57.175 32.000 0.00 0.00 0.00 4.17
974 1002 8.519526 TGATTTCACTGAAATAAACATACCCAC 58.480 33.333 15.58 1.94 41.56 4.61
975 1003 8.642935 TGATTTCACTGAAATAAACATACCCA 57.357 30.769 15.58 5.19 41.56 4.51
976 1004 9.520204 CATGATTTCACTGAAATAAACATACCC 57.480 33.333 15.58 2.97 41.56 3.69
977 1005 9.520204 CCATGATTTCACTGAAATAAACATACC 57.480 33.333 15.58 3.57 41.56 2.73
980 1008 8.253113 GGTCCATGATTTCACTGAAATAAACAT 58.747 33.333 15.58 12.25 41.56 2.71
981 1009 7.309744 GGGTCCATGATTTCACTGAAATAAACA 60.310 37.037 15.58 10.74 41.56 2.83
982 1010 7.035612 GGGTCCATGATTTCACTGAAATAAAC 58.964 38.462 15.58 5.58 41.56 2.01
983 1011 6.723515 TGGGTCCATGATTTCACTGAAATAAA 59.276 34.615 15.58 8.82 41.56 1.40
986 1014 4.676109 TGGGTCCATGATTTCACTGAAAT 58.324 39.130 15.55 15.55 43.77 2.17
1025 1054 5.461327 ACTGCCCTCCAATATGAAATTGAT 58.539 37.500 0.00 0.00 0.00 2.57
1078 1107 1.063417 CATGCCTTCTTCTCCCCCAAT 60.063 52.381 0.00 0.00 0.00 3.16
1094 1123 2.686915 CCCCTCTCAATCTTTGACATGC 59.313 50.000 0.00 0.00 35.46 4.06
1102 1131 6.216456 AGAGACAAATTACCCCTCTCAATCTT 59.784 38.462 0.00 0.00 31.47 2.40
1115 1144 4.997395 TCACTTCCTGCAGAGACAAATTAC 59.003 41.667 17.39 0.00 0.00 1.89
1119 1148 3.558931 TTCACTTCCTGCAGAGACAAA 57.441 42.857 17.39 0.00 0.00 2.83
1144 1173 8.593492 TTCAATTGAATATGGTCTCGTAGATG 57.407 34.615 16.91 0.00 33.89 2.90
1150 1179 6.925610 TTCCTTCAATTGAATATGGTCTCG 57.074 37.500 20.76 6.35 33.01 4.04
1185 3319 6.631540 GCTCTTTCCTAGGAAGCAGAAAGTAT 60.632 42.308 25.68 0.00 43.57 2.12
1217 3352 2.627699 TCATGAAGGAAAACCAAGCCAC 59.372 45.455 0.00 0.00 0.00 5.01
1255 3394 6.017605 CCAACACAAATATAGTCAGCCATCTC 60.018 42.308 0.00 0.00 0.00 2.75
1332 3471 2.310779 AGTCACTCCCACTTCTGCTA 57.689 50.000 0.00 0.00 0.00 3.49
1338 3477 2.408565 TCCTCAAAGTCACTCCCACTT 58.591 47.619 0.00 0.00 35.51 3.16
1373 3515 2.093973 ACATCTGGTTCGTCATCACTCC 60.094 50.000 0.00 0.00 0.00 3.85
1383 3525 5.651530 ACAGTTATCACTACATCTGGTTCG 58.348 41.667 0.00 0.00 0.00 3.95
1394 3539 9.203421 CTACATGTTCAACAACAGTTATCACTA 57.797 33.333 2.30 0.00 45.85 2.74
1499 3722 2.897326 TCTACTTGTCTTGCACTGCCTA 59.103 45.455 0.00 0.00 0.00 3.93
1632 3868 3.070476 TGTGCAGCTATGACCATTTGA 57.930 42.857 0.00 0.00 0.00 2.69
1718 3957 2.513897 CGGAATCCTCCCCGTTGC 60.514 66.667 0.00 0.00 40.78 4.17
1721 3960 0.908180 AACTTCGGAATCCTCCCCGT 60.908 55.000 0.00 0.00 45.48 5.28
1722 3961 0.462047 CAACTTCGGAATCCTCCCCG 60.462 60.000 0.00 0.00 46.57 5.73
1734 3973 5.220381 TGTCTTCTAAGCTACACAACTTCG 58.780 41.667 0.00 0.00 0.00 3.79
1744 3983 5.894393 ACTTCCTAGCATGTCTTCTAAGCTA 59.106 40.000 0.00 0.00 36.80 3.32
1777 4016 1.542108 GCTCTTGGATTCCCTCATCCG 60.542 57.143 0.00 0.00 45.39 4.18
1800 4039 2.441001 CCTGTAGCATCCCTTCCAATCT 59.559 50.000 0.00 0.00 0.00 2.40
1943 4182 2.026822 GGAATGTGCTCTTCCTCTTCCA 60.027 50.000 8.74 0.00 39.30 3.53
1988 4227 5.481105 CATGGTCAAAGCAAAATGTGGTAT 58.519 37.500 0.00 0.00 36.79 2.73
2017 4256 3.633525 TGCACAACTGATTCTTGCTTCTT 59.366 39.130 0.00 0.00 34.18 2.52
2073 4312 5.941647 TCAGATTTCATGAACAAGATGCTCA 59.058 36.000 7.89 0.00 0.00 4.26
2101 4340 5.359009 TCCACACTTTACCCTTACTCTATCG 59.641 44.000 0.00 0.00 0.00 2.92
2115 4354 0.323360 GCCAGGCCATCCACACTTTA 60.323 55.000 5.01 0.00 33.74 1.85
2310 4552 6.514947 TCTTGCAAAACTATTGCTTTCATGT 58.485 32.000 13.59 0.00 45.13 3.21
2337 4579 4.454678 TGAAGTTGAGACATCAGCAAACT 58.545 39.130 0.00 0.00 39.00 2.66
2389 4634 5.850557 TCATTCCACACAACAATTTGTCT 57.149 34.783 1.83 0.00 44.57 3.41
2460 4713 3.832527 ACAATTGTGCTTCTAGGGTTGT 58.167 40.909 11.07 0.00 0.00 3.32
2477 4730 4.202336 TGTTGGATCCATGCAAACAACAAT 60.202 37.500 17.06 0.00 43.33 2.71
2534 4792 7.332557 TGAATCCTTGCTTCATTGCATTAAAT 58.667 30.769 0.00 0.00 42.96 1.40
2607 4865 2.320587 GCTCACCCTTCACTGCACG 61.321 63.158 0.00 0.00 0.00 5.34
2677 4935 6.539649 TTCTTTCATTCTCAACTACAACCG 57.460 37.500 0.00 0.00 0.00 4.44
2710 4968 1.402787 CAGCCCAACAAACCACTTCT 58.597 50.000 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.