Multiple sequence alignment - TraesCS2B01G411900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G411900 chr2B 100.000 4067 0 0 1 4067 586121638 586117572 0.000000e+00 7511
1 TraesCS2B01G411900 chr2B 98.851 87 1 0 1 87 635878262 635878348 5.440000e-34 156
2 TraesCS2B01G411900 chr2A 94.780 2931 127 18 89 3004 643765567 643762648 0.000000e+00 4542
3 TraesCS2B01G411900 chr2A 94.332 247 11 1 3043 3289 643762557 643762314 3.840000e-100 375
4 TraesCS2B01G411900 chr2A 93.377 151 10 0 3633 3783 643762012 643761862 1.470000e-54 224
5 TraesCS2B01G411900 chr2D 94.553 2809 119 16 249 3047 498880073 498877289 0.000000e+00 4309
6 TraesCS2B01G411900 chr2D 94.395 339 16 3 3043 3380 498877257 498876921 6.030000e-143 518
7 TraesCS2B01G411900 chr2D 90.801 337 20 4 3426 3751 498876917 498876581 1.340000e-119 440
8 TraesCS2B01G411900 chr2D 88.000 175 16 4 89 261 498880543 498880372 6.890000e-48 202
9 TraesCS2B01G411900 chr4B 98.876 89 0 1 1 88 194795130 194795218 1.510000e-34 158
10 TraesCS2B01G411900 chr4B 98.851 87 1 0 1 87 636561534 636561448 5.440000e-34 156
11 TraesCS2B01G411900 chr6B 98.851 87 1 0 1 87 653824019 653823933 5.440000e-34 156
12 TraesCS2B01G411900 chr5B 98.851 87 1 0 1 87 16521957 16522043 5.440000e-34 156
13 TraesCS2B01G411900 chr5B 96.774 93 3 0 1 93 627517742 627517834 5.440000e-34 156
14 TraesCS2B01G411900 chr5B 95.699 93 4 0 1 93 623914991 623915083 2.530000e-32 150
15 TraesCS2B01G411900 chr3B 98.851 87 1 0 1 87 279167839 279167753 5.440000e-34 156
16 TraesCS2B01G411900 chr3B 98.851 87 1 0 1 87 309023563 309023477 5.440000e-34 156


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G411900 chr2B 586117572 586121638 4066 True 7511.000000 7511 100.00000 1 4067 1 chr2B.!!$R1 4066
1 TraesCS2B01G411900 chr2A 643761862 643765567 3705 True 1713.666667 4542 94.16300 89 3783 3 chr2A.!!$R1 3694
2 TraesCS2B01G411900 chr2D 498876581 498880543 3962 True 1367.250000 4309 91.93725 89 3751 4 chr2D.!!$R1 3662

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 50 0.040058 TGATGAGCACAAGGGCCATT 59.960 50.0 6.18 0.0 0.00 3.16 F
500 816 0.237235 TCTTCGGTTGTGCGAAATGC 59.763 50.0 0.00 0.0 46.70 3.56 F
2109 2437 0.103755 TGCTGCGAGATCCAGACATC 59.896 55.0 2.03 0.0 32.03 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1054 1382 0.953960 GAACCACGCTTGTTCGGGAT 60.954 55.0 0.00 0.0 34.16 3.85 R
2217 2545 0.949105 AGCCGTTGACGATTGTGGAC 60.949 55.0 4.91 0.0 43.02 4.02 R
3997 4507 0.035056 ACCTTTTGAGATGGAGCGGG 60.035 55.0 0.00 0.0 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.042638 TGCCTCATCAGCTAATAGTAATCC 57.957 41.667 0.00 0.00 0.00 3.01
24 25 5.782331 TGCCTCATCAGCTAATAGTAATCCT 59.218 40.000 0.00 0.00 0.00 3.24
25 26 6.105333 GCCTCATCAGCTAATAGTAATCCTG 58.895 44.000 0.00 0.00 0.00 3.86
26 27 6.638610 CCTCATCAGCTAATAGTAATCCTGG 58.361 44.000 0.00 0.00 0.00 4.45
27 28 6.351711 CCTCATCAGCTAATAGTAATCCTGGG 60.352 46.154 0.00 0.00 0.00 4.45
28 29 5.485353 TCATCAGCTAATAGTAATCCTGGGG 59.515 44.000 0.00 0.00 0.00 4.96
29 30 3.583086 TCAGCTAATAGTAATCCTGGGGC 59.417 47.826 0.00 0.00 0.00 5.80
30 31 3.584848 CAGCTAATAGTAATCCTGGGGCT 59.415 47.826 0.00 0.00 0.00 5.19
31 32 3.584848 AGCTAATAGTAATCCTGGGGCTG 59.415 47.826 0.00 0.00 0.00 4.85
32 33 3.583086 GCTAATAGTAATCCTGGGGCTGA 59.417 47.826 0.00 0.00 0.00 4.26
33 34 4.226168 GCTAATAGTAATCCTGGGGCTGAT 59.774 45.833 0.00 0.00 0.00 2.90
34 35 4.647564 AATAGTAATCCTGGGGCTGATG 57.352 45.455 0.00 0.00 0.00 3.07
35 36 2.196742 AGTAATCCTGGGGCTGATGA 57.803 50.000 0.00 0.00 0.00 2.92
36 37 2.053244 AGTAATCCTGGGGCTGATGAG 58.947 52.381 0.00 0.00 0.00 2.90
37 38 0.767375 TAATCCTGGGGCTGATGAGC 59.233 55.000 0.00 0.00 45.40 4.26
45 46 3.194719 GCTGATGAGCACAAGGGC 58.805 61.111 0.00 0.00 45.46 5.19
46 47 2.413142 GCTGATGAGCACAAGGGCC 61.413 63.158 0.00 0.00 45.46 5.80
47 48 1.001764 CTGATGAGCACAAGGGCCA 60.002 57.895 6.18 0.00 0.00 5.36
48 49 0.395311 CTGATGAGCACAAGGGCCAT 60.395 55.000 6.18 0.00 0.00 4.40
49 50 0.040058 TGATGAGCACAAGGGCCATT 59.960 50.000 6.18 0.00 0.00 3.16
50 51 1.188863 GATGAGCACAAGGGCCATTT 58.811 50.000 6.18 0.00 0.00 2.32
51 52 1.551883 GATGAGCACAAGGGCCATTTT 59.448 47.619 6.18 0.00 0.00 1.82
52 53 0.968405 TGAGCACAAGGGCCATTTTC 59.032 50.000 6.18 0.00 0.00 2.29
53 54 1.260544 GAGCACAAGGGCCATTTTCT 58.739 50.000 6.18 0.00 0.00 2.52
54 55 0.971386 AGCACAAGGGCCATTTTCTG 59.029 50.000 6.18 0.00 0.00 3.02
56 57 0.609662 CACAAGGGCCATTTTCTGGG 59.390 55.000 6.18 0.00 46.06 4.45
57 58 0.486879 ACAAGGGCCATTTTCTGGGA 59.513 50.000 6.18 0.00 46.06 4.37
58 59 1.132881 ACAAGGGCCATTTTCTGGGAA 60.133 47.619 6.18 0.00 46.06 3.97
59 60 2.190538 CAAGGGCCATTTTCTGGGAAT 58.809 47.619 6.18 0.00 46.06 3.01
60 61 2.573009 CAAGGGCCATTTTCTGGGAATT 59.427 45.455 6.18 0.00 46.06 2.17
61 62 3.774216 CAAGGGCCATTTTCTGGGAATTA 59.226 43.478 6.18 0.00 46.06 1.40
62 63 4.073425 AGGGCCATTTTCTGGGAATTAA 57.927 40.909 6.18 0.00 46.06 1.40
63 64 4.634411 AGGGCCATTTTCTGGGAATTAAT 58.366 39.130 6.18 0.00 46.06 1.40
64 65 5.787327 AGGGCCATTTTCTGGGAATTAATA 58.213 37.500 6.18 0.00 46.06 0.98
65 66 5.602561 AGGGCCATTTTCTGGGAATTAATAC 59.397 40.000 6.18 0.00 46.06 1.89
66 67 5.221641 GGGCCATTTTCTGGGAATTAATACC 60.222 44.000 4.39 2.85 46.06 2.73
67 68 5.221641 GGCCATTTTCTGGGAATTAATACCC 60.222 44.000 0.00 0.00 46.06 3.69
75 76 4.924305 GGGAATTAATACCCGGAAAACC 57.076 45.455 0.73 0.00 36.56 3.27
76 77 3.316029 GGGAATTAATACCCGGAAAACCG 59.684 47.826 0.73 0.00 36.56 4.44
83 84 4.992511 CCGGAAAACCGGTCGCCA 62.993 66.667 8.04 0.00 46.95 5.69
84 85 3.719144 CGGAAAACCGGTCGCCAC 61.719 66.667 8.04 0.00 0.00 5.01
85 86 2.592287 GGAAAACCGGTCGCCACA 60.592 61.111 8.04 0.00 0.00 4.17
86 87 2.188161 GGAAAACCGGTCGCCACAA 61.188 57.895 8.04 0.00 0.00 3.33
87 88 1.009335 GAAAACCGGTCGCCACAAC 60.009 57.895 8.04 0.00 0.00 3.32
153 154 5.365403 CGGAGCTAGAACTCTAACATAGG 57.635 47.826 0.00 0.00 36.87 2.57
186 187 6.726490 ACGTGTCATATAATGTTAGGAGGT 57.274 37.500 0.00 0.00 0.00 3.85
218 219 8.650143 TCACCTAGATTTAGCCAATTTTTCTT 57.350 30.769 0.00 0.00 0.00 2.52
245 246 7.329717 GGACAAATAGAGAATTAGGAGCATACG 59.670 40.741 0.00 0.00 0.00 3.06
246 247 7.155328 ACAAATAGAGAATTAGGAGCATACGG 58.845 38.462 0.00 0.00 0.00 4.02
260 573 5.099042 AGCATACGGAGGTGTATTTTCTT 57.901 39.130 0.00 0.00 32.81 2.52
318 631 1.313475 CTACCAGTCCCCCTGCCTA 59.687 63.158 0.00 0.00 40.06 3.93
319 632 1.002533 TACCAGTCCCCCTGCCTAC 59.997 63.158 0.00 0.00 40.06 3.18
354 667 5.050091 AGCGACAACTACAATTGTTCTTCAG 60.050 40.000 17.78 10.02 42.89 3.02
367 680 1.032014 TCTTCAGCAACAACCAAGCC 58.968 50.000 0.00 0.00 0.00 4.35
398 713 3.557054 CCATCCACACCGGTATATTCCAG 60.557 52.174 6.87 0.00 35.57 3.86
409 724 4.377897 GGTATATTCCAGTCCACTTTCCG 58.622 47.826 0.00 0.00 0.00 4.30
411 726 2.474410 ATTCCAGTCCACTTTCCGAC 57.526 50.000 0.00 0.00 0.00 4.79
413 728 2.027625 CCAGTCCACTTTCCGACGC 61.028 63.158 0.00 0.00 34.10 5.19
487 803 3.432252 GTGATATAATGGGCGTTCTTCGG 59.568 47.826 0.00 0.00 40.26 4.30
500 816 0.237235 TCTTCGGTTGTGCGAAATGC 59.763 50.000 0.00 0.00 46.70 3.56
555 871 3.052036 CAACAATGAAGCCGGAAACAAG 58.948 45.455 5.05 1.32 0.00 3.16
730 1054 4.154918 GGACAATCTGTTGGTAGCTTTCAG 59.845 45.833 0.00 0.00 39.70 3.02
772 1096 0.947244 CCTGCCAACACTTCAGACAC 59.053 55.000 0.00 0.00 0.00 3.67
879 1206 2.220586 CCCCGTTTGCCCCCAAATT 61.221 57.895 0.00 0.00 42.44 1.82
966 1294 3.723235 CTCACGTGGCCAGATCCCG 62.723 68.421 17.00 8.75 0.00 5.14
993 1321 2.076863 CGAATCAGACAGTTTCCACCC 58.923 52.381 0.00 0.00 0.00 4.61
1002 1330 1.675641 GTTTCCACCCGCAGATGCT 60.676 57.895 2.95 0.00 39.32 3.79
1054 1382 3.882131 GCAGGATAAGGTGCCTTCA 57.118 52.632 6.77 0.00 37.47 3.02
1063 1391 1.002624 GGTGCCTTCATCCCGAACA 60.003 57.895 0.00 0.00 0.00 3.18
1102 1430 1.613630 AGCCTCCAGTTCCCATCGT 60.614 57.895 0.00 0.00 0.00 3.73
1275 1603 3.017771 GCCCAAGAATTTGCCCGGG 62.018 63.158 19.09 19.09 32.79 5.73
1293 1621 1.683319 GGGGAGCTCCATGTTCTTTCC 60.683 57.143 33.29 18.01 37.91 3.13
1553 1881 4.464008 GTCCAAGATTTCATGGCCTATGA 58.536 43.478 3.32 9.06 43.92 2.15
1977 2305 3.473647 CTGCGGGAGATGGAGGCA 61.474 66.667 0.00 0.00 0.00 4.75
2109 2437 0.103755 TGCTGCGAGATCCAGACATC 59.896 55.000 2.03 0.00 32.03 3.06
2215 2543 3.986006 GGGTCACCGACTGCGTCA 61.986 66.667 8.91 0.00 35.23 4.35
2217 2545 2.094659 GGTCACCGACTGCGTCATG 61.095 63.158 8.91 6.57 35.23 3.07
2223 2551 1.372872 CGACTGCGTCATGTCCACA 60.373 57.895 8.91 0.00 32.09 4.17
2289 2617 1.134965 AGAGCGTATGACAAGCTGGTC 60.135 52.381 14.82 14.82 42.48 4.02
2466 2794 3.883549 GGGCAGATCAGGAGGGCC 61.884 72.222 0.00 0.00 43.86 5.80
2514 2842 1.302511 GAAGCAGAAGGGGTGCGAA 60.303 57.895 0.00 0.00 46.06 4.70
2822 3150 1.203441 AGGGACATGAAGCTGCAGGA 61.203 55.000 14.65 0.00 0.00 3.86
2942 3270 2.350522 CGTGGAGGAGAAAACCTGATG 58.649 52.381 0.00 0.00 40.73 3.07
2943 3271 2.087646 GTGGAGGAGAAAACCTGATGC 58.912 52.381 0.00 0.00 40.73 3.91
2946 3274 2.555227 GGAGGAGAAAACCTGATGCCAA 60.555 50.000 0.00 0.00 40.73 4.52
2951 3279 2.554032 AGAAAACCTGATGCCAAACTCG 59.446 45.455 0.00 0.00 0.00 4.18
2966 3294 1.875813 CTCGACGAGTGCCTGATGC 60.876 63.158 16.83 0.00 41.77 3.91
2987 3315 1.207811 TCATCTTCAGCATCGGAGCAA 59.792 47.619 3.00 0.00 36.85 3.91
2989 3317 0.107993 TCTTCAGCATCGGAGCAAGG 60.108 55.000 3.00 0.00 36.85 3.61
3040 3386 7.516627 GCAAAATAGGTAAATATTTGCTTGCCG 60.517 37.037 20.01 6.61 35.91 5.69
3047 3428 1.748950 TATTTGCTTGCCGCTCATGA 58.251 45.000 0.00 0.00 40.11 3.07
3158 3539 9.645059 GTATAGCTCAATAGTTCTGCATTCATA 57.355 33.333 0.00 0.00 0.00 2.15
3280 3661 6.084277 GGCTTGTTACGTTCTTTGGATTTAG 58.916 40.000 0.00 0.00 0.00 1.85
3285 3666 8.211116 TGTTACGTTCTTTGGATTTAGTTTGA 57.789 30.769 0.00 0.00 0.00 2.69
3289 3670 5.458015 GTTCTTTGGATTTAGTTTGACCCG 58.542 41.667 0.00 0.00 0.00 5.28
3294 3675 0.323999 ATTTAGTTTGACCCGGGGCC 60.324 55.000 27.91 16.61 0.00 5.80
3295 3676 1.717038 TTTAGTTTGACCCGGGGCCA 61.717 55.000 27.91 19.39 0.00 5.36
3296 3677 2.414658 TTAGTTTGACCCGGGGCCAC 62.415 60.000 27.91 21.50 0.00 5.01
3320 3701 2.023223 GCCACAGCCGCAAATGTTG 61.023 57.895 0.00 0.00 0.00 3.33
3334 3715 4.263677 GCAAATGTTGTGAGTGATTATGCG 59.736 41.667 0.00 0.00 0.00 4.73
3341 3722 2.408704 GTGAGTGATTATGCGCGTATCC 59.591 50.000 14.48 5.11 0.00 2.59
3380 3761 5.431765 AGCGTCCAGAGAATATGACAATTT 58.568 37.500 0.00 0.00 0.00 1.82
3381 3762 5.295292 AGCGTCCAGAGAATATGACAATTTG 59.705 40.000 0.00 0.00 0.00 2.32
3383 3764 5.065090 CGTCCAGAGAATATGACAATTTGCA 59.935 40.000 0.00 0.00 0.00 4.08
3384 3765 6.493116 GTCCAGAGAATATGACAATTTGCAG 58.507 40.000 0.00 0.00 0.00 4.41
3385 3766 6.317140 GTCCAGAGAATATGACAATTTGCAGA 59.683 38.462 0.00 0.00 0.00 4.26
3386 3767 6.317140 TCCAGAGAATATGACAATTTGCAGAC 59.683 38.462 0.00 0.00 0.00 3.51
3387 3768 6.094464 CCAGAGAATATGACAATTTGCAGACA 59.906 38.462 0.00 0.00 0.00 3.41
3388 3769 7.201794 CCAGAGAATATGACAATTTGCAGACAT 60.202 37.037 0.00 1.20 0.00 3.06
3389 3770 8.833493 CAGAGAATATGACAATTTGCAGACATA 58.167 33.333 0.00 3.21 0.00 2.29
3390 3771 9.570468 AGAGAATATGACAATTTGCAGACATAT 57.430 29.630 0.00 5.14 34.03 1.78
3397 3778 8.296799 TGACAATTTGCAGACATATTTGAAAC 57.703 30.769 0.00 0.00 0.00 2.78
3398 3779 7.924947 TGACAATTTGCAGACATATTTGAAACA 59.075 29.630 0.00 0.00 0.00 2.83
3399 3780 8.075593 ACAATTTGCAGACATATTTGAAACAC 57.924 30.769 0.00 0.00 0.00 3.32
3400 3781 7.710044 ACAATTTGCAGACATATTTGAAACACA 59.290 29.630 0.00 0.00 0.00 3.72
3401 3782 8.714179 CAATTTGCAGACATATTTGAAACACAT 58.286 29.630 0.00 0.00 0.00 3.21
3402 3783 8.836268 ATTTGCAGACATATTTGAAACACATT 57.164 26.923 0.00 0.00 0.00 2.71
3403 3784 8.659925 TTTGCAGACATATTTGAAACACATTT 57.340 26.923 0.00 0.00 0.00 2.32
3404 3785 7.872163 TGCAGACATATTTGAAACACATTTC 57.128 32.000 0.00 0.00 43.96 2.17
3419 3800 7.684062 AACACATTTCATTTTTCTTCTGACG 57.316 32.000 0.00 0.00 0.00 4.35
3420 3801 6.208644 ACACATTTCATTTTTCTTCTGACGG 58.791 36.000 0.00 0.00 0.00 4.79
3421 3802 5.630680 CACATTTCATTTTTCTTCTGACGGG 59.369 40.000 0.00 0.00 0.00 5.28
3422 3803 5.301805 ACATTTCATTTTTCTTCTGACGGGT 59.698 36.000 0.00 0.00 0.00 5.28
3423 3804 6.488683 ACATTTCATTTTTCTTCTGACGGGTA 59.511 34.615 0.00 0.00 0.00 3.69
3424 3805 6.554334 TTTCATTTTTCTTCTGACGGGTAG 57.446 37.500 0.00 0.00 0.00 3.18
3433 3814 5.632118 TCTTCTGACGGGTAGCTATAAGAT 58.368 41.667 0.00 0.00 0.00 2.40
3436 3817 4.760715 TCTGACGGGTAGCTATAAGATGAC 59.239 45.833 0.00 0.00 0.00 3.06
3652 4162 1.294659 GAAGACGACCAGCTTGCCAG 61.295 60.000 0.00 0.00 0.00 4.85
3761 4271 1.229336 CAGTCCTCCCACCACTCCT 60.229 63.158 0.00 0.00 0.00 3.69
3768 4278 2.214216 CCCACCACTCCTCCGTGAA 61.214 63.158 0.00 0.00 37.06 3.18
3777 4287 2.415608 CCTCCGTGAAGCGAGGCTA 61.416 63.158 0.00 0.00 44.77 3.93
3786 4296 4.893601 GCGAGGCTACCCGCTTCC 62.894 72.222 11.32 0.00 46.96 3.46
3787 4297 4.222847 CGAGGCTACCCGCTTCCC 62.223 72.222 0.00 0.00 41.34 3.97
3788 4298 3.862991 GAGGCTACCCGCTTCCCC 61.863 72.222 0.00 0.00 38.69 4.81
3799 4309 4.109675 CTTCCCCGGGATGCGGTT 62.110 66.667 26.32 0.00 0.00 4.44
3800 4310 4.418328 TTCCCCGGGATGCGGTTG 62.418 66.667 26.32 1.48 0.00 3.77
3803 4313 3.788145 CCCGGGATGCGGTTGGTA 61.788 66.667 18.48 0.00 0.00 3.25
3804 4314 2.203015 CCGGGATGCGGTTGGTAG 60.203 66.667 0.00 0.00 0.00 3.18
3805 4315 2.895372 CGGGATGCGGTTGGTAGC 60.895 66.667 0.00 0.00 0.00 3.58
3806 4316 2.516225 GGGATGCGGTTGGTAGCC 60.516 66.667 0.00 0.00 35.89 3.93
3807 4317 2.516225 GGATGCGGTTGGTAGCCC 60.516 66.667 0.00 0.00 29.53 5.19
3808 4318 2.895372 GATGCGGTTGGTAGCCCG 60.895 66.667 5.38 5.38 46.90 6.13
3812 4322 4.747989 GATGCGGTTGGTAGCCCGAATA 62.748 54.545 12.93 0.32 42.62 1.75
3813 4323 5.979451 GATGCGGTTGGTAGCCCGAATAT 62.979 52.174 12.93 4.56 42.62 1.28
3814 4324 6.650989 GATGCGGTTGGTAGCCCGAATATA 62.651 50.000 12.93 0.00 42.62 0.86
3816 4326 3.049708 GGTTGGTAGCCCGAATATACC 57.950 52.381 0.00 0.00 39.57 2.73
3817 4327 2.289882 GGTTGGTAGCCCGAATATACCC 60.290 54.545 0.00 0.00 38.56 3.69
3818 4328 2.369532 GTTGGTAGCCCGAATATACCCA 59.630 50.000 0.00 0.00 38.56 4.51
3819 4329 2.253610 TGGTAGCCCGAATATACCCAG 58.746 52.381 0.00 0.00 38.56 4.45
3820 4330 2.254508 GGTAGCCCGAATATACCCAGT 58.745 52.381 0.00 0.00 34.14 4.00
3821 4331 2.233186 GGTAGCCCGAATATACCCAGTC 59.767 54.545 0.00 0.00 34.14 3.51
3822 4332 2.097110 AGCCCGAATATACCCAGTCA 57.903 50.000 0.00 0.00 0.00 3.41
3823 4333 1.971357 AGCCCGAATATACCCAGTCAG 59.029 52.381 0.00 0.00 0.00 3.51
3824 4334 1.002087 GCCCGAATATACCCAGTCAGG 59.998 57.143 0.00 0.00 37.03 3.86
3825 4335 1.002087 CCCGAATATACCCAGTCAGGC 59.998 57.143 0.00 0.00 35.39 4.85
3826 4336 1.002087 CCGAATATACCCAGTCAGGCC 59.998 57.143 0.00 0.00 35.39 5.19
3827 4337 1.002087 CGAATATACCCAGTCAGGCCC 59.998 57.143 0.00 0.00 35.39 5.80
3828 4338 2.054799 GAATATACCCAGTCAGGCCCA 58.945 52.381 0.00 0.00 35.39 5.36
3829 4339 1.435256 ATATACCCAGTCAGGCCCAC 58.565 55.000 0.00 0.00 35.39 4.61
3830 4340 1.046472 TATACCCAGTCAGGCCCACG 61.046 60.000 0.00 0.00 35.39 4.94
3841 4351 3.799755 GCCCACGCGCGAAGATTT 61.800 61.111 39.36 10.31 0.00 2.17
3842 4352 2.867472 CCCACGCGCGAAGATTTT 59.133 55.556 39.36 9.38 0.00 1.82
3843 4353 1.511887 CCCACGCGCGAAGATTTTG 60.512 57.895 39.36 21.93 0.00 2.44
3844 4354 1.511887 CCACGCGCGAAGATTTTGG 60.512 57.895 39.36 27.00 0.00 3.28
3845 4355 1.206578 CACGCGCGAAGATTTTGGT 59.793 52.632 39.36 6.60 0.00 3.67
3846 4356 0.789383 CACGCGCGAAGATTTTGGTC 60.789 55.000 39.36 0.00 0.00 4.02
3847 4357 0.949105 ACGCGCGAAGATTTTGGTCT 60.949 50.000 39.36 5.70 0.00 3.85
3848 4358 0.519175 CGCGCGAAGATTTTGGTCTG 60.519 55.000 28.94 0.00 0.00 3.51
3849 4359 0.517316 GCGCGAAGATTTTGGTCTGT 59.483 50.000 12.10 0.00 0.00 3.41
3850 4360 1.069227 GCGCGAAGATTTTGGTCTGTT 60.069 47.619 12.10 0.00 0.00 3.16
3851 4361 2.604614 GCGCGAAGATTTTGGTCTGTTT 60.605 45.455 12.10 0.00 0.00 2.83
3852 4362 2.973224 CGCGAAGATTTTGGTCTGTTTG 59.027 45.455 0.00 0.00 0.00 2.93
3853 4363 3.303725 CGCGAAGATTTTGGTCTGTTTGA 60.304 43.478 0.00 0.00 0.00 2.69
3854 4364 4.613622 CGCGAAGATTTTGGTCTGTTTGAT 60.614 41.667 0.00 0.00 0.00 2.57
3855 4365 5.222631 GCGAAGATTTTGGTCTGTTTGATT 58.777 37.500 0.00 0.00 0.00 2.57
3856 4366 6.378582 GCGAAGATTTTGGTCTGTTTGATTA 58.621 36.000 0.00 0.00 0.00 1.75
3857 4367 7.029563 GCGAAGATTTTGGTCTGTTTGATTAT 58.970 34.615 0.00 0.00 0.00 1.28
3858 4368 7.218963 GCGAAGATTTTGGTCTGTTTGATTATC 59.781 37.037 0.00 0.00 0.00 1.75
3859 4369 8.454106 CGAAGATTTTGGTCTGTTTGATTATCT 58.546 33.333 0.00 0.00 0.00 1.98
3860 4370 9.565213 GAAGATTTTGGTCTGTTTGATTATCTG 57.435 33.333 0.00 0.00 0.00 2.90
3861 4371 7.542025 AGATTTTGGTCTGTTTGATTATCTGC 58.458 34.615 0.00 0.00 0.00 4.26
3862 4372 6.647334 TTTTGGTCTGTTTGATTATCTGCA 57.353 33.333 0.00 0.00 0.00 4.41
3863 4373 6.839124 TTTGGTCTGTTTGATTATCTGCAT 57.161 33.333 0.00 0.00 0.00 3.96
3864 4374 6.839124 TTGGTCTGTTTGATTATCTGCATT 57.161 33.333 0.00 0.00 0.00 3.56
3865 4375 6.441093 TGGTCTGTTTGATTATCTGCATTC 57.559 37.500 0.00 0.00 0.00 2.67
3866 4376 5.065090 TGGTCTGTTTGATTATCTGCATTCG 59.935 40.000 0.00 0.00 0.00 3.34
3867 4377 4.966366 GTCTGTTTGATTATCTGCATTCGC 59.034 41.667 0.00 0.00 39.24 4.70
3868 4378 4.877823 TCTGTTTGATTATCTGCATTCGCT 59.122 37.500 0.00 0.00 39.64 4.93
3869 4379 5.007039 TCTGTTTGATTATCTGCATTCGCTC 59.993 40.000 0.00 0.00 39.64 5.03
3870 4380 4.877823 TGTTTGATTATCTGCATTCGCTCT 59.122 37.500 0.00 0.00 39.64 4.09
3871 4381 5.355071 TGTTTGATTATCTGCATTCGCTCTT 59.645 36.000 0.00 0.00 39.64 2.85
3872 4382 6.538381 TGTTTGATTATCTGCATTCGCTCTTA 59.462 34.615 0.00 0.00 39.64 2.10
3873 4383 7.065683 TGTTTGATTATCTGCATTCGCTCTTAA 59.934 33.333 0.00 0.00 39.64 1.85
3874 4384 6.775939 TGATTATCTGCATTCGCTCTTAAG 57.224 37.500 0.00 0.00 39.64 1.85
3875 4385 5.178252 TGATTATCTGCATTCGCTCTTAAGC 59.822 40.000 0.00 0.00 45.56 3.09
3876 4386 2.680312 TCTGCATTCGCTCTTAAGCT 57.320 45.000 0.00 0.00 46.91 3.74
3877 4387 2.977914 TCTGCATTCGCTCTTAAGCTT 58.022 42.857 3.48 3.48 46.91 3.74
3878 4388 2.674852 TCTGCATTCGCTCTTAAGCTTG 59.325 45.455 9.86 0.00 46.91 4.01
3879 4389 2.417933 CTGCATTCGCTCTTAAGCTTGT 59.582 45.455 9.86 0.00 46.91 3.16
3880 4390 3.595173 TGCATTCGCTCTTAAGCTTGTA 58.405 40.909 9.86 0.00 46.91 2.41
3881 4391 4.191544 TGCATTCGCTCTTAAGCTTGTAT 58.808 39.130 9.86 0.00 46.91 2.29
3882 4392 5.356426 TGCATTCGCTCTTAAGCTTGTATA 58.644 37.500 9.86 0.00 46.91 1.47
3883 4393 5.463392 TGCATTCGCTCTTAAGCTTGTATAG 59.537 40.000 9.86 2.49 46.91 1.31
3884 4394 5.613577 GCATTCGCTCTTAAGCTTGTATAGC 60.614 44.000 9.86 11.45 46.91 2.97
3885 4395 7.932854 GCATTCGCTCTTAAGCTTGTATAGCA 61.933 42.308 9.86 0.00 46.91 3.49
3886 4396 9.156803 GCATTCGCTCTTAAGCTTGTATAGCAT 62.157 40.741 9.86 1.33 46.91 3.79
3902 4412 9.449550 TTGTATAGCATGAATTTTAAAGCATCG 57.550 29.630 0.00 0.00 0.00 3.84
3903 4413 8.835439 TGTATAGCATGAATTTTAAAGCATCGA 58.165 29.630 0.00 0.00 0.00 3.59
3904 4414 9.831737 GTATAGCATGAATTTTAAAGCATCGAT 57.168 29.630 0.00 0.00 0.00 3.59
3905 4415 8.738199 ATAGCATGAATTTTAAAGCATCGATG 57.262 30.769 21.27 21.27 0.00 3.84
3906 4416 5.981315 AGCATGAATTTTAAAGCATCGATGG 59.019 36.000 26.00 8.82 0.00 3.51
3907 4417 5.176223 GCATGAATTTTAAAGCATCGATGGG 59.824 40.000 26.00 2.75 0.00 4.00
3908 4418 5.913137 TGAATTTTAAAGCATCGATGGGT 57.087 34.783 26.00 10.24 0.00 4.51
3909 4419 5.890334 TGAATTTTAAAGCATCGATGGGTC 58.110 37.500 26.00 10.25 0.00 4.46
3910 4420 5.652014 TGAATTTTAAAGCATCGATGGGTCT 59.348 36.000 26.00 12.40 0.00 3.85
3911 4421 4.963276 TTTTAAAGCATCGATGGGTCTG 57.037 40.909 26.00 2.01 0.00 3.51
3912 4422 1.953559 TAAAGCATCGATGGGTCTGC 58.046 50.000 26.00 12.78 34.85 4.26
3913 4423 0.035152 AAAGCATCGATGGGTCTGCA 60.035 50.000 26.00 0.00 37.09 4.41
3914 4424 0.182061 AAGCATCGATGGGTCTGCAT 59.818 50.000 26.00 2.81 37.09 3.96
3915 4425 0.182061 AGCATCGATGGGTCTGCATT 59.818 50.000 26.00 0.00 37.09 3.56
3916 4426 0.309922 GCATCGATGGGTCTGCATTG 59.690 55.000 26.00 0.00 34.77 2.82
3917 4427 1.671979 CATCGATGGGTCTGCATTGT 58.328 50.000 17.96 0.00 0.00 2.71
3918 4428 2.019249 CATCGATGGGTCTGCATTGTT 58.981 47.619 17.96 0.00 0.00 2.83
3919 4429 3.205338 CATCGATGGGTCTGCATTGTTA 58.795 45.455 17.96 0.00 0.00 2.41
3920 4430 2.905075 TCGATGGGTCTGCATTGTTAG 58.095 47.619 0.00 0.00 0.00 2.34
3921 4431 1.331756 CGATGGGTCTGCATTGTTAGC 59.668 52.381 0.00 0.00 0.00 3.09
3922 4432 1.331756 GATGGGTCTGCATTGTTAGCG 59.668 52.381 0.00 0.00 33.85 4.26
3923 4433 0.036164 TGGGTCTGCATTGTTAGCGT 59.964 50.000 0.00 0.00 33.85 5.07
3924 4434 0.727398 GGGTCTGCATTGTTAGCGTC 59.273 55.000 0.00 0.00 33.85 5.19
3925 4435 0.727398 GGTCTGCATTGTTAGCGTCC 59.273 55.000 0.00 0.00 33.85 4.79
3926 4436 1.438651 GTCTGCATTGTTAGCGTCCA 58.561 50.000 0.00 0.00 33.85 4.02
3927 4437 1.804151 GTCTGCATTGTTAGCGTCCAA 59.196 47.619 0.00 0.00 33.85 3.53
3928 4438 2.420022 GTCTGCATTGTTAGCGTCCAAT 59.580 45.455 0.00 0.00 33.85 3.16
3929 4439 3.081061 TCTGCATTGTTAGCGTCCAATT 58.919 40.909 0.00 0.00 33.85 2.32
3930 4440 3.505680 TCTGCATTGTTAGCGTCCAATTT 59.494 39.130 0.00 0.00 33.85 1.82
3931 4441 3.573598 TGCATTGTTAGCGTCCAATTTG 58.426 40.909 0.00 0.00 33.85 2.32
3932 4442 2.923020 GCATTGTTAGCGTCCAATTTGG 59.077 45.455 9.28 9.28 39.43 3.28
3933 4443 3.613910 GCATTGTTAGCGTCCAATTTGGT 60.614 43.478 14.98 0.00 39.03 3.67
3934 4444 3.907894 TTGTTAGCGTCCAATTTGGTC 57.092 42.857 14.98 8.82 39.03 4.02
3935 4445 3.134574 TGTTAGCGTCCAATTTGGTCT 57.865 42.857 14.98 12.39 39.03 3.85
3936 4446 4.274602 TGTTAGCGTCCAATTTGGTCTA 57.725 40.909 14.98 11.54 39.03 2.59
3937 4447 4.250464 TGTTAGCGTCCAATTTGGTCTAG 58.750 43.478 14.98 6.59 39.03 2.43
3938 4448 1.739067 AGCGTCCAATTTGGTCTAGC 58.261 50.000 14.98 14.67 39.03 3.42
3939 4449 0.733150 GCGTCCAATTTGGTCTAGCC 59.267 55.000 14.98 0.00 39.03 3.93
3940 4450 1.379527 CGTCCAATTTGGTCTAGCCC 58.620 55.000 14.98 0.00 39.03 5.19
3941 4451 1.339631 CGTCCAATTTGGTCTAGCCCA 60.340 52.381 14.98 0.00 39.03 5.36
3942 4452 2.092323 GTCCAATTTGGTCTAGCCCAC 58.908 52.381 14.98 0.02 39.03 4.61
3943 4453 1.707989 TCCAATTTGGTCTAGCCCACA 59.292 47.619 14.98 0.00 39.03 4.17
3944 4454 1.818674 CCAATTTGGTCTAGCCCACAC 59.181 52.381 7.31 0.00 33.14 3.82
3945 4455 2.555227 CCAATTTGGTCTAGCCCACACT 60.555 50.000 7.31 0.00 33.14 3.55
3946 4456 2.749621 CAATTTGGTCTAGCCCACACTC 59.250 50.000 0.00 0.00 33.14 3.51
3947 4457 0.320374 TTTGGTCTAGCCCACACTCG 59.680 55.000 0.00 0.00 33.14 4.18
3948 4458 2.167398 TTGGTCTAGCCCACACTCGC 62.167 60.000 0.00 0.00 33.14 5.03
3949 4459 2.646175 GGTCTAGCCCACACTCGCA 61.646 63.158 0.00 0.00 0.00 5.10
3950 4460 1.446272 GTCTAGCCCACACTCGCAC 60.446 63.158 0.00 0.00 0.00 5.34
3951 4461 1.906333 TCTAGCCCACACTCGCACA 60.906 57.895 0.00 0.00 0.00 4.57
3952 4462 1.738099 CTAGCCCACACTCGCACAC 60.738 63.158 0.00 0.00 0.00 3.82
3953 4463 3.567478 TAGCCCACACTCGCACACG 62.567 63.158 0.00 0.00 42.01 4.49
3955 4465 2.587753 CCCACACTCGCACACGTT 60.588 61.111 0.00 0.00 41.18 3.99
3956 4466 2.594962 CCCACACTCGCACACGTTC 61.595 63.158 0.00 0.00 41.18 3.95
3957 4467 1.591594 CCACACTCGCACACGTTCT 60.592 57.895 0.00 0.00 41.18 3.01
3958 4468 1.559814 CACACTCGCACACGTTCTG 59.440 57.895 0.00 0.00 41.18 3.02
3959 4469 0.869880 CACACTCGCACACGTTCTGA 60.870 55.000 0.00 0.00 41.18 3.27
3960 4470 0.179121 ACACTCGCACACGTTCTGAA 60.179 50.000 0.00 0.00 41.18 3.02
3961 4471 0.229753 CACTCGCACACGTTCTGAAC 59.770 55.000 10.48 10.48 41.18 3.18
3971 4481 2.964076 GTTCTGAACGTTTACGCGC 58.036 52.632 5.73 0.00 44.43 6.86
3972 4482 0.230260 GTTCTGAACGTTTACGCGCA 59.770 50.000 5.73 0.00 44.43 6.09
3973 4483 0.230260 TTCTGAACGTTTACGCGCAC 59.770 50.000 5.73 0.00 44.43 5.34
3974 4484 0.870735 TCTGAACGTTTACGCGCACA 60.871 50.000 5.73 0.00 44.43 4.57
3975 4485 0.716926 CTGAACGTTTACGCGCACAC 60.717 55.000 5.73 0.00 44.43 3.82
3976 4486 1.437573 GAACGTTTACGCGCACACC 60.438 57.895 5.73 0.00 44.43 4.16
3977 4487 3.213009 AACGTTTACGCGCACACCG 62.213 57.895 5.73 5.00 44.43 4.94
3978 4488 3.396502 CGTTTACGCGCACACCGA 61.397 61.111 5.73 0.00 40.02 4.69
3979 4489 2.169327 GTTTACGCGCACACCGAC 59.831 61.111 5.73 0.00 40.02 4.79
3980 4490 3.037249 TTTACGCGCACACCGACC 61.037 61.111 5.73 0.00 40.02 4.79
3981 4491 3.786901 TTTACGCGCACACCGACCA 62.787 57.895 5.73 0.00 40.02 4.02
3982 4492 4.710695 TACGCGCACACCGACCAG 62.711 66.667 5.73 0.00 40.02 4.00
3984 4494 4.710695 CGCGCACACCGACCAGTA 62.711 66.667 8.75 0.00 40.02 2.74
3985 4495 2.125673 GCGCACACCGACCAGTAT 60.126 61.111 0.30 0.00 40.02 2.12
3986 4496 1.740296 GCGCACACCGACCAGTATT 60.740 57.895 0.30 0.00 40.02 1.89
3987 4497 1.693083 GCGCACACCGACCAGTATTC 61.693 60.000 0.30 0.00 40.02 1.75
3988 4498 0.389296 CGCACACCGACCAGTATTCA 60.389 55.000 0.00 0.00 40.02 2.57
3989 4499 1.359848 GCACACCGACCAGTATTCAG 58.640 55.000 0.00 0.00 0.00 3.02
3990 4500 1.359848 CACACCGACCAGTATTCAGC 58.640 55.000 0.00 0.00 0.00 4.26
3991 4501 0.108804 ACACCGACCAGTATTCAGCG 60.109 55.000 0.00 0.00 0.00 5.18
3992 4502 0.806102 CACCGACCAGTATTCAGCGG 60.806 60.000 0.00 0.00 43.95 5.52
3993 4503 0.968901 ACCGACCAGTATTCAGCGGA 60.969 55.000 0.00 0.00 41.11 5.54
3994 4504 0.249073 CCGACCAGTATTCAGCGGAG 60.249 60.000 0.00 0.00 41.11 4.63
3995 4505 0.738975 CGACCAGTATTCAGCGGAGA 59.261 55.000 0.00 0.00 0.00 3.71
3996 4506 1.268794 CGACCAGTATTCAGCGGAGAG 60.269 57.143 0.00 0.00 0.00 3.20
4009 4519 2.733945 GAGAGCCCGCTCCATCTC 59.266 66.667 13.02 0.79 43.70 2.75
4010 4520 2.042537 AGAGCCCGCTCCATCTCA 60.043 61.111 13.02 0.00 43.70 3.27
4011 4521 1.680522 GAGAGCCCGCTCCATCTCAA 61.681 60.000 13.02 0.00 43.70 3.02
4012 4522 1.221840 GAGCCCGCTCCATCTCAAA 59.778 57.895 5.34 0.00 37.11 2.69
4013 4523 0.392998 GAGCCCGCTCCATCTCAAAA 60.393 55.000 5.34 0.00 37.11 2.44
4014 4524 0.393537 AGCCCGCTCCATCTCAAAAG 60.394 55.000 0.00 0.00 0.00 2.27
4015 4525 1.379642 GCCCGCTCCATCTCAAAAGG 61.380 60.000 0.00 0.00 0.00 3.11
4016 4526 0.035056 CCCGCTCCATCTCAAAAGGT 60.035 55.000 0.00 0.00 0.00 3.50
4017 4527 1.373570 CCGCTCCATCTCAAAAGGTC 58.626 55.000 0.00 0.00 0.00 3.85
4018 4528 1.002366 CGCTCCATCTCAAAAGGTCG 58.998 55.000 0.00 0.00 0.00 4.79
4019 4529 1.373570 GCTCCATCTCAAAAGGTCGG 58.626 55.000 0.00 0.00 0.00 4.79
4020 4530 2.014068 GCTCCATCTCAAAAGGTCGGG 61.014 57.143 0.00 0.00 0.00 5.14
4021 4531 0.035439 TCCATCTCAAAAGGTCGGGC 60.035 55.000 0.00 0.00 0.00 6.13
4022 4532 0.035056 CCATCTCAAAAGGTCGGGCT 60.035 55.000 0.00 0.00 0.00 5.19
4023 4533 1.089920 CATCTCAAAAGGTCGGGCTG 58.910 55.000 0.00 0.00 0.00 4.85
4024 4534 0.984230 ATCTCAAAAGGTCGGGCTGA 59.016 50.000 0.00 0.00 0.00 4.26
4025 4535 0.762418 TCTCAAAAGGTCGGGCTGAA 59.238 50.000 0.00 0.00 0.00 3.02
4026 4536 1.160137 CTCAAAAGGTCGGGCTGAAG 58.840 55.000 0.00 0.00 0.00 3.02
4027 4537 0.762418 TCAAAAGGTCGGGCTGAAGA 59.238 50.000 0.00 0.00 0.00 2.87
4028 4538 1.160137 CAAAAGGTCGGGCTGAAGAG 58.840 55.000 0.00 0.00 0.00 2.85
4029 4539 1.056660 AAAAGGTCGGGCTGAAGAGA 58.943 50.000 0.00 0.00 0.00 3.10
4030 4540 0.610687 AAAGGTCGGGCTGAAGAGAG 59.389 55.000 0.00 0.00 0.00 3.20
4031 4541 1.261238 AAGGTCGGGCTGAAGAGAGG 61.261 60.000 0.00 0.00 0.00 3.69
4032 4542 1.682684 GGTCGGGCTGAAGAGAGGA 60.683 63.158 0.00 0.00 0.00 3.71
4033 4543 1.258445 GGTCGGGCTGAAGAGAGGAA 61.258 60.000 0.00 0.00 0.00 3.36
4034 4544 0.174617 GTCGGGCTGAAGAGAGGAAG 59.825 60.000 0.00 0.00 0.00 3.46
4035 4545 0.972983 TCGGGCTGAAGAGAGGAAGG 60.973 60.000 0.00 0.00 0.00 3.46
4036 4546 0.972983 CGGGCTGAAGAGAGGAAGGA 60.973 60.000 0.00 0.00 0.00 3.36
4037 4547 1.280457 GGGCTGAAGAGAGGAAGGAA 58.720 55.000 0.00 0.00 0.00 3.36
4038 4548 1.843206 GGGCTGAAGAGAGGAAGGAAT 59.157 52.381 0.00 0.00 0.00 3.01
4039 4549 2.158827 GGGCTGAAGAGAGGAAGGAATC 60.159 54.545 0.00 0.00 0.00 2.52
4040 4550 2.771372 GGCTGAAGAGAGGAAGGAATCT 59.229 50.000 0.00 0.00 0.00 2.40
4041 4551 3.181466 GGCTGAAGAGAGGAAGGAATCTC 60.181 52.174 0.00 0.00 41.90 2.75
4046 4556 3.328535 GAGAGGAAGGAATCTCTCCCT 57.671 52.381 8.66 0.00 46.81 4.20
4047 4557 3.653164 GAGAGGAAGGAATCTCTCCCTT 58.347 50.000 8.66 0.00 46.81 3.95
4048 4558 3.383223 AGAGGAAGGAATCTCTCCCTTG 58.617 50.000 0.00 0.00 46.81 3.61
4049 4559 3.111484 GAGGAAGGAATCTCTCCCTTGT 58.889 50.000 0.00 0.00 46.81 3.16
4050 4560 4.016105 AGAGGAAGGAATCTCTCCCTTGTA 60.016 45.833 0.00 0.00 46.81 2.41
4051 4561 4.699994 AGGAAGGAATCTCTCCCTTGTAA 58.300 43.478 0.00 0.00 46.81 2.41
4052 4562 4.719273 AGGAAGGAATCTCTCCCTTGTAAG 59.281 45.833 0.00 0.00 46.81 2.34
4053 4563 4.471747 GGAAGGAATCTCTCCCTTGTAAGT 59.528 45.833 0.00 0.00 46.81 2.24
4054 4564 5.045505 GGAAGGAATCTCTCCCTTGTAAGTT 60.046 44.000 0.00 0.00 46.81 2.66
4055 4565 5.428184 AGGAATCTCTCCCTTGTAAGTTG 57.572 43.478 0.00 0.00 46.81 3.16
4056 4566 4.226168 AGGAATCTCTCCCTTGTAAGTTGG 59.774 45.833 0.00 0.00 46.81 3.77
4057 4567 4.019231 GGAATCTCTCCCTTGTAAGTTGGT 60.019 45.833 0.00 0.00 38.44 3.67
4058 4568 5.515008 GGAATCTCTCCCTTGTAAGTTGGTT 60.515 44.000 0.00 0.00 38.44 3.67
4059 4569 4.351874 TCTCTCCCTTGTAAGTTGGTTG 57.648 45.455 0.00 0.00 0.00 3.77
4060 4570 3.714798 TCTCTCCCTTGTAAGTTGGTTGT 59.285 43.478 0.00 0.00 0.00 3.32
4061 4571 3.815401 CTCTCCCTTGTAAGTTGGTTGTG 59.185 47.826 0.00 0.00 0.00 3.33
4062 4572 2.884639 CTCCCTTGTAAGTTGGTTGTGG 59.115 50.000 0.00 0.00 0.00 4.17
4063 4573 1.339929 CCCTTGTAAGTTGGTTGTGGC 59.660 52.381 0.00 0.00 0.00 5.01
4064 4574 1.339929 CCTTGTAAGTTGGTTGTGGCC 59.660 52.381 0.00 0.00 0.00 5.36
4065 4575 2.306847 CTTGTAAGTTGGTTGTGGCCT 58.693 47.619 3.32 0.00 0.00 5.19
4066 4576 1.975660 TGTAAGTTGGTTGTGGCCTC 58.024 50.000 3.32 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.782331 AGGATTACTATTAGCTGATGAGGCA 59.218 40.000 0.32 0.00 0.00 4.75
1 2 6.105333 CAGGATTACTATTAGCTGATGAGGC 58.895 44.000 0.32 0.00 0.00 4.70
2 3 6.351711 CCCAGGATTACTATTAGCTGATGAGG 60.352 46.154 0.32 0.00 0.00 3.86
3 4 6.351711 CCCCAGGATTACTATTAGCTGATGAG 60.352 46.154 0.32 0.00 0.00 2.90
4 5 5.485353 CCCCAGGATTACTATTAGCTGATGA 59.515 44.000 0.32 0.00 0.00 2.92
5 6 5.738909 CCCCAGGATTACTATTAGCTGATG 58.261 45.833 0.32 0.00 0.00 3.07
6 7 4.226168 GCCCCAGGATTACTATTAGCTGAT 59.774 45.833 0.00 0.00 0.00 2.90
7 8 3.583086 GCCCCAGGATTACTATTAGCTGA 59.417 47.826 0.00 0.00 0.00 4.26
8 9 3.584848 AGCCCCAGGATTACTATTAGCTG 59.415 47.826 0.00 0.00 0.00 4.24
9 10 3.584848 CAGCCCCAGGATTACTATTAGCT 59.415 47.826 0.00 0.00 0.00 3.32
10 11 3.583086 TCAGCCCCAGGATTACTATTAGC 59.417 47.826 0.00 0.00 0.00 3.09
11 12 5.485353 TCATCAGCCCCAGGATTACTATTAG 59.515 44.000 0.00 0.00 0.00 1.73
12 13 5.411493 TCATCAGCCCCAGGATTACTATTA 58.589 41.667 0.00 0.00 0.00 0.98
13 14 4.242811 TCATCAGCCCCAGGATTACTATT 58.757 43.478 0.00 0.00 0.00 1.73
14 15 3.843027 CTCATCAGCCCCAGGATTACTAT 59.157 47.826 0.00 0.00 0.00 2.12
15 16 3.242867 CTCATCAGCCCCAGGATTACTA 58.757 50.000 0.00 0.00 0.00 1.82
16 17 2.053244 CTCATCAGCCCCAGGATTACT 58.947 52.381 0.00 0.00 0.00 2.24
17 18 1.544314 GCTCATCAGCCCCAGGATTAC 60.544 57.143 0.00 0.00 40.14 1.89
18 19 0.767375 GCTCATCAGCCCCAGGATTA 59.233 55.000 0.00 0.00 40.14 1.75
19 20 1.284111 TGCTCATCAGCCCCAGGATT 61.284 55.000 0.00 0.00 46.26 3.01
20 21 1.695239 TGCTCATCAGCCCCAGGAT 60.695 57.895 0.00 0.00 46.26 3.24
21 22 2.285592 TGCTCATCAGCCCCAGGA 60.286 61.111 0.00 0.00 46.26 3.86
22 23 2.124403 GTGCTCATCAGCCCCAGG 60.124 66.667 0.00 0.00 46.26 4.45
23 24 1.001764 TTGTGCTCATCAGCCCCAG 60.002 57.895 0.00 0.00 46.26 4.45
24 25 1.001764 CTTGTGCTCATCAGCCCCA 60.002 57.895 0.00 0.00 46.26 4.96
25 26 1.751927 CCTTGTGCTCATCAGCCCC 60.752 63.158 0.00 0.00 46.26 5.80
26 27 1.751927 CCCTTGTGCTCATCAGCCC 60.752 63.158 0.00 0.00 46.26 5.19
27 28 2.413142 GCCCTTGTGCTCATCAGCC 61.413 63.158 0.00 0.00 46.26 4.85
29 30 0.395311 ATGGCCCTTGTGCTCATCAG 60.395 55.000 0.00 0.00 0.00 2.90
30 31 0.040058 AATGGCCCTTGTGCTCATCA 59.960 50.000 0.00 0.00 0.00 3.07
31 32 1.188863 AAATGGCCCTTGTGCTCATC 58.811 50.000 0.00 0.00 0.00 2.92
32 33 1.551883 GAAAATGGCCCTTGTGCTCAT 59.448 47.619 0.00 0.00 0.00 2.90
33 34 0.968405 GAAAATGGCCCTTGTGCTCA 59.032 50.000 0.00 0.00 0.00 4.26
34 35 1.067354 CAGAAAATGGCCCTTGTGCTC 60.067 52.381 0.00 0.00 0.00 4.26
35 36 0.971386 CAGAAAATGGCCCTTGTGCT 59.029 50.000 0.00 0.00 0.00 4.40
36 37 0.037046 CCAGAAAATGGCCCTTGTGC 60.037 55.000 0.00 0.00 43.83 4.57
46 47 5.830991 TCCGGGTATTAATTCCCAGAAAATG 59.169 40.000 25.04 10.32 43.57 2.32
47 48 6.020881 TCCGGGTATTAATTCCCAGAAAAT 57.979 37.500 25.04 0.00 43.57 1.82
48 49 5.453866 TCCGGGTATTAATTCCCAGAAAA 57.546 39.130 25.04 6.83 43.57 2.29
49 50 5.453866 TTCCGGGTATTAATTCCCAGAAA 57.546 39.130 25.04 14.73 43.57 2.52
50 51 5.453866 TTTCCGGGTATTAATTCCCAGAA 57.546 39.130 25.04 22.27 43.57 3.02
51 52 5.195185 GTTTTCCGGGTATTAATTCCCAGA 58.805 41.667 25.04 18.42 43.57 3.86
52 53 4.340097 GGTTTTCCGGGTATTAATTCCCAG 59.660 45.833 25.04 16.63 43.57 4.45
53 54 4.279982 GGTTTTCCGGGTATTAATTCCCA 58.720 43.478 25.04 8.22 43.57 4.37
54 55 4.924305 GGTTTTCCGGGTATTAATTCCC 57.076 45.455 18.01 18.01 40.26 3.97
68 69 2.188161 TTGTGGCGACCGGTTTTCC 61.188 57.895 9.42 11.24 0.00 3.13
69 70 1.009335 GTTGTGGCGACCGGTTTTC 60.009 57.895 9.42 1.31 0.00 2.29
70 71 2.825975 CGTTGTGGCGACCGGTTTT 61.826 57.895 9.42 0.00 0.00 2.43
71 72 2.999739 ATCGTTGTGGCGACCGGTTT 63.000 55.000 9.42 0.00 43.99 3.27
72 73 3.524648 ATCGTTGTGGCGACCGGTT 62.525 57.895 9.42 0.00 43.99 4.44
73 74 3.998672 ATCGTTGTGGCGACCGGT 61.999 61.111 6.92 6.92 43.99 5.28
74 75 3.487202 CATCGTTGTGGCGACCGG 61.487 66.667 0.00 0.00 43.99 5.28
75 76 4.147322 GCATCGTTGTGGCGACCG 62.147 66.667 0.00 0.00 43.99 4.79
76 77 3.799755 GGCATCGTTGTGGCGACC 61.800 66.667 0.00 0.00 43.99 4.79
77 78 3.799755 GGGCATCGTTGTGGCGAC 61.800 66.667 0.00 0.00 44.85 5.19
80 81 4.740822 AGGGGGCATCGTTGTGGC 62.741 66.667 0.00 0.00 43.34 5.01
81 82 2.751436 CAGGGGGCATCGTTGTGG 60.751 66.667 0.00 0.00 0.00 4.17
82 83 3.443045 GCAGGGGGCATCGTTGTG 61.443 66.667 0.00 0.00 43.97 3.33
84 85 4.776322 TCGCAGGGGGCATCGTTG 62.776 66.667 0.00 0.00 45.17 4.10
85 86 4.473520 CTCGCAGGGGGCATCGTT 62.474 66.667 0.00 0.00 45.17 3.85
137 138 6.268855 AGCTCTCCCTATGTTAGAGTTCTA 57.731 41.667 0.00 0.00 39.18 2.10
143 144 5.067413 CACGTTTAGCTCTCCCTATGTTAGA 59.933 44.000 0.00 0.00 0.00 2.10
144 145 5.163540 ACACGTTTAGCTCTCCCTATGTTAG 60.164 44.000 0.00 0.00 0.00 2.34
145 146 4.708421 ACACGTTTAGCTCTCCCTATGTTA 59.292 41.667 0.00 0.00 0.00 2.41
153 154 6.924060 ACATTATATGACACGTTTAGCTCTCC 59.076 38.462 0.00 0.00 0.00 3.71
218 219 6.560003 TGCTCCTAATTCTCTATTTGTCCA 57.440 37.500 0.00 0.00 0.00 4.02
245 246 5.586643 CCAAGCTCTAAGAAAATACACCTCC 59.413 44.000 0.00 0.00 0.00 4.30
246 247 5.586643 CCCAAGCTCTAAGAAAATACACCTC 59.413 44.000 0.00 0.00 0.00 3.85
260 573 1.306997 CCCACTCCCCCAAGCTCTA 60.307 63.158 0.00 0.00 0.00 2.43
354 667 1.595109 GGCTTGGCTTGGTTGTTGC 60.595 57.895 0.00 0.00 0.00 4.17
367 680 2.672651 TGTGGATGGCGTGGCTTG 60.673 61.111 0.00 0.00 0.00 4.01
398 713 2.049802 TCGCGTCGGAAAGTGGAC 60.050 61.111 5.77 0.00 0.00 4.02
409 724 4.994201 TGGCAGTCGTGTCGCGTC 62.994 66.667 5.77 0.00 42.13 5.19
413 728 1.424403 TATTTGTGGCAGTCGTGTCG 58.576 50.000 0.00 0.00 0.00 4.35
467 783 3.660865 ACCGAAGAACGCCCATTATATC 58.339 45.455 0.00 0.00 41.07 1.63
487 803 1.337110 GCTTCCGCATTTCGCACAAC 61.337 55.000 0.00 0.00 42.60 3.32
500 816 9.734620 TTGATAGAATTCAATAATTTGCTTCCG 57.265 29.630 8.44 0.00 35.41 4.30
521 837 5.105392 GCTTCATTGTTGGGTTCCATTGATA 60.105 40.000 0.00 0.00 31.53 2.15
730 1054 2.532250 ATTTGGGGTCCAAGACATCC 57.468 50.000 0.00 0.00 44.84 3.51
772 1096 3.994392 ACCAGTTAACTTGTGATGCTACG 59.006 43.478 11.31 0.00 0.00 3.51
823 1147 3.011517 TCTCTGGAGGGGCTTGGC 61.012 66.667 0.00 0.00 0.00 4.52
838 1162 1.002134 CCACGGCCTCATTTGGTCT 60.002 57.895 0.00 0.00 0.00 3.85
874 1201 5.401674 GCAAGTGAAAGAAGCTCAGAATTTG 59.598 40.000 0.00 0.00 0.00 2.32
879 1206 2.498167 GGCAAGTGAAAGAAGCTCAGA 58.502 47.619 0.00 0.00 0.00 3.27
966 1294 1.519455 CTGTCTGATTCGGACGGGC 60.519 63.158 22.02 1.00 42.18 6.13
967 1295 0.246635 AACTGTCTGATTCGGACGGG 59.753 55.000 29.39 21.22 46.94 5.28
973 1301 2.076863 GGGTGGAAACTGTCTGATTCG 58.923 52.381 0.00 0.00 0.00 3.34
1002 1330 1.854664 GTCGCGCTGGTTTTTACGA 59.145 52.632 5.56 0.00 0.00 3.43
1054 1382 0.953960 GAACCACGCTTGTTCGGGAT 60.954 55.000 0.00 0.00 34.16 3.85
1102 1430 3.633525 GAGTAGCATTTGGCCATGATTCA 59.366 43.478 6.09 0.00 46.50 2.57
1242 1570 2.754375 GGCTCAAGAACGGGGGAA 59.246 61.111 0.00 0.00 0.00 3.97
1275 1603 1.373570 CGGAAAGAACATGGAGCTCC 58.626 55.000 26.78 26.78 0.00 4.70
1327 1655 1.592669 CAGCATCCGGAAGCGTAGG 60.593 63.158 24.66 12.66 35.48 3.18
1553 1881 2.418910 CGTCTCTCCGGGAGCACAT 61.419 63.158 19.48 0.00 41.60 3.21
1641 1969 1.404315 CCCTTCTTCCCTTCGAGAACG 60.404 57.143 0.00 0.00 41.26 3.95
1644 1972 1.265454 GGCCCTTCTTCCCTTCGAGA 61.265 60.000 0.00 0.00 0.00 4.04
2109 2437 3.564644 GCATGATGATCACCTTCAGGAAG 59.435 47.826 12.37 2.01 38.94 3.46
2215 2543 1.438651 CCGTTGACGATTGTGGACAT 58.561 50.000 4.91 0.00 43.02 3.06
2217 2545 0.949105 AGCCGTTGACGATTGTGGAC 60.949 55.000 4.91 0.00 43.02 4.02
2256 2584 2.470362 CGCTCTGATGGCTGGCTTG 61.470 63.158 2.00 0.00 0.00 4.01
2822 3150 1.757306 CTCCTGTCCAGCTTGGTGT 59.243 57.895 0.00 0.00 39.03 4.16
2942 3270 2.668280 GGCACTCGTCGAGTTTGGC 61.668 63.158 24.94 23.04 41.37 4.52
2943 3271 1.006102 AGGCACTCGTCGAGTTTGG 60.006 57.895 24.94 15.06 41.37 3.28
2946 3274 0.109086 CATCAGGCACTCGTCGAGTT 60.109 55.000 24.94 8.72 41.37 3.01
2951 3279 1.216444 TGAGCATCAGGCACTCGTC 59.784 57.895 0.00 0.00 42.56 4.20
2966 3294 1.202498 TGCTCCGATGCTGAAGATGAG 60.202 52.381 0.00 0.00 0.00 2.90
2987 3315 2.053747 TTACAGACACCCAATCCCCT 57.946 50.000 0.00 0.00 0.00 4.79
2989 3317 4.770010 TCAAATTTACAGACACCCAATCCC 59.230 41.667 0.00 0.00 0.00 3.85
3040 3386 5.368256 ACAGTGTCAATTTCTTCATGAGC 57.632 39.130 0.00 0.00 0.00 4.26
3140 3521 7.606858 ATCCGATATGAATGCAGAACTATTG 57.393 36.000 0.00 0.00 0.00 1.90
3145 3526 4.686091 TCGAATCCGATATGAATGCAGAAC 59.314 41.667 0.00 0.00 40.30 3.01
3158 3539 6.206829 TGTACAAGAGTATCATCGAATCCGAT 59.793 38.462 0.00 0.00 43.13 4.18
3200 3581 4.216411 ACAAGTTATTACATCCGCCACT 57.784 40.909 0.00 0.00 0.00 4.00
3294 3675 3.716006 CGGCTGTGGCTTCACGTG 61.716 66.667 9.94 9.94 44.00 4.49
3320 3701 2.408704 GGATACGCGCATAATCACTCAC 59.591 50.000 5.73 0.00 0.00 3.51
3341 3722 0.664761 CGCTTGGCTCCAATGGTATG 59.335 55.000 0.00 0.00 35.20 2.39
3380 3761 7.872163 GAAATGTGTTTCAAATATGTCTGCA 57.128 32.000 0.00 0.00 42.61 4.41
3393 3774 8.261908 CGTCAGAAGAAAAATGAAATGTGTTTC 58.738 33.333 0.00 0.00 43.22 2.78
3394 3775 7.222611 CCGTCAGAAGAAAAATGAAATGTGTTT 59.777 33.333 0.00 0.00 0.00 2.83
3395 3776 6.697019 CCGTCAGAAGAAAAATGAAATGTGTT 59.303 34.615 0.00 0.00 0.00 3.32
3396 3777 6.208644 CCGTCAGAAGAAAAATGAAATGTGT 58.791 36.000 0.00 0.00 0.00 3.72
3397 3778 5.630680 CCCGTCAGAAGAAAAATGAAATGTG 59.369 40.000 0.00 0.00 0.00 3.21
3398 3779 5.301805 ACCCGTCAGAAGAAAAATGAAATGT 59.698 36.000 0.00 0.00 0.00 2.71
3399 3780 5.772521 ACCCGTCAGAAGAAAAATGAAATG 58.227 37.500 0.00 0.00 0.00 2.32
3400 3781 6.349363 GCTACCCGTCAGAAGAAAAATGAAAT 60.349 38.462 0.00 0.00 0.00 2.17
3401 3782 5.048991 GCTACCCGTCAGAAGAAAAATGAAA 60.049 40.000 0.00 0.00 0.00 2.69
3402 3783 4.454504 GCTACCCGTCAGAAGAAAAATGAA 59.545 41.667 0.00 0.00 0.00 2.57
3403 3784 4.000988 GCTACCCGTCAGAAGAAAAATGA 58.999 43.478 0.00 0.00 0.00 2.57
3404 3785 4.003648 AGCTACCCGTCAGAAGAAAAATG 58.996 43.478 0.00 0.00 0.00 2.32
3405 3786 4.287766 AGCTACCCGTCAGAAGAAAAAT 57.712 40.909 0.00 0.00 0.00 1.82
3406 3787 3.764237 AGCTACCCGTCAGAAGAAAAA 57.236 42.857 0.00 0.00 0.00 1.94
3407 3788 6.379133 TCTTATAGCTACCCGTCAGAAGAAAA 59.621 38.462 0.00 0.00 0.00 2.29
3408 3789 5.889853 TCTTATAGCTACCCGTCAGAAGAAA 59.110 40.000 0.00 0.00 0.00 2.52
3409 3790 5.443283 TCTTATAGCTACCCGTCAGAAGAA 58.557 41.667 0.00 0.00 0.00 2.52
3410 3791 5.045012 TCTTATAGCTACCCGTCAGAAGA 57.955 43.478 0.00 0.00 0.00 2.87
3411 3792 5.473846 TCATCTTATAGCTACCCGTCAGAAG 59.526 44.000 0.00 0.00 0.00 2.85
3412 3793 5.241064 GTCATCTTATAGCTACCCGTCAGAA 59.759 44.000 0.00 0.00 0.00 3.02
3413 3794 4.760715 GTCATCTTATAGCTACCCGTCAGA 59.239 45.833 0.00 0.00 0.00 3.27
3414 3795 4.519350 TGTCATCTTATAGCTACCCGTCAG 59.481 45.833 0.00 0.00 0.00 3.51
3415 3796 4.466827 TGTCATCTTATAGCTACCCGTCA 58.533 43.478 0.00 0.00 0.00 4.35
3416 3797 4.760715 TCTGTCATCTTATAGCTACCCGTC 59.239 45.833 0.00 0.00 0.00 4.79
3417 3798 4.726583 TCTGTCATCTTATAGCTACCCGT 58.273 43.478 0.00 0.00 0.00 5.28
3418 3799 5.707242 TTCTGTCATCTTATAGCTACCCG 57.293 43.478 0.00 0.00 0.00 5.28
3419 3800 7.475137 AGATTCTGTCATCTTATAGCTACCC 57.525 40.000 0.00 0.00 28.19 3.69
3420 3801 8.580720 TGAAGATTCTGTCATCTTATAGCTACC 58.419 37.037 0.00 0.00 42.52 3.18
3421 3802 9.624697 CTGAAGATTCTGTCATCTTATAGCTAC 57.375 37.037 0.00 0.00 42.52 3.58
3422 3803 9.360901 ACTGAAGATTCTGTCATCTTATAGCTA 57.639 33.333 0.00 0.00 42.52 3.32
3423 3804 8.143193 CACTGAAGATTCTGTCATCTTATAGCT 58.857 37.037 2.49 0.00 42.52 3.32
3424 3805 7.384660 CCACTGAAGATTCTGTCATCTTATAGC 59.615 40.741 2.49 0.00 42.52 2.97
3462 3843 2.300967 ACATCACCGCCCCATGAGT 61.301 57.895 0.00 0.00 0.00 3.41
3631 4141 1.569479 GGCAAGCTGGTCGTCTTCAC 61.569 60.000 0.00 0.00 0.00 3.18
3722 4232 4.314440 GACGCCCTGGAGCACACA 62.314 66.667 0.00 0.00 0.00 3.72
3761 4271 2.707849 GGTAGCCTCGCTTCACGGA 61.708 63.158 0.00 0.00 43.89 4.69
3788 4298 2.895372 GCTACCAACCGCATCCCG 60.895 66.667 0.00 0.00 0.00 5.14
3789 4299 2.516225 GGCTACCAACCGCATCCC 60.516 66.667 0.00 0.00 0.00 3.85
3790 4300 2.516225 GGGCTACCAACCGCATCC 60.516 66.667 0.00 0.00 36.50 3.51
3791 4301 2.895372 CGGGCTACCAACCGCATC 60.895 66.667 0.00 0.00 43.96 3.91
3796 4306 2.289882 GGGTATATTCGGGCTACCAACC 60.290 54.545 0.00 0.00 37.28 3.77
3797 4307 2.369532 TGGGTATATTCGGGCTACCAAC 59.630 50.000 0.00 0.00 37.28 3.77
3798 4308 2.635915 CTGGGTATATTCGGGCTACCAA 59.364 50.000 0.00 0.00 37.28 3.67
3799 4309 2.253610 CTGGGTATATTCGGGCTACCA 58.746 52.381 0.00 0.00 37.28 3.25
3800 4310 2.233186 GACTGGGTATATTCGGGCTACC 59.767 54.545 0.00 0.00 35.24 3.18
3801 4311 2.895404 TGACTGGGTATATTCGGGCTAC 59.105 50.000 0.00 0.00 0.00 3.58
3802 4312 3.162666 CTGACTGGGTATATTCGGGCTA 58.837 50.000 0.00 0.00 0.00 3.93
3803 4313 1.971357 CTGACTGGGTATATTCGGGCT 59.029 52.381 0.00 0.00 0.00 5.19
3804 4314 1.002087 CCTGACTGGGTATATTCGGGC 59.998 57.143 0.00 0.00 0.00 6.13
3805 4315 1.002087 GCCTGACTGGGTATATTCGGG 59.998 57.143 0.01 0.00 37.54 5.14
3806 4316 1.002087 GGCCTGACTGGGTATATTCGG 59.998 57.143 0.00 0.00 36.00 4.30
3807 4317 1.002087 GGGCCTGACTGGGTATATTCG 59.998 57.143 0.84 0.00 36.00 3.34
3808 4318 2.054799 TGGGCCTGACTGGGTATATTC 58.945 52.381 4.53 0.00 36.00 1.75
3809 4319 1.774856 GTGGGCCTGACTGGGTATATT 59.225 52.381 4.53 0.00 36.00 1.28
3810 4320 1.435256 GTGGGCCTGACTGGGTATAT 58.565 55.000 4.53 0.00 36.00 0.86
3811 4321 1.046472 CGTGGGCCTGACTGGGTATA 61.046 60.000 4.53 0.00 36.00 1.47
3812 4322 2.367202 CGTGGGCCTGACTGGGTAT 61.367 63.158 4.53 0.00 36.00 2.73
3813 4323 3.000819 CGTGGGCCTGACTGGGTA 61.001 66.667 4.53 0.00 36.00 3.69
3824 4334 3.322706 AAAATCTTCGCGCGTGGGC 62.323 57.895 30.98 0.00 0.00 5.36
3825 4335 1.511887 CAAAATCTTCGCGCGTGGG 60.512 57.895 30.98 19.78 0.00 4.61
3826 4336 1.511887 CCAAAATCTTCGCGCGTGG 60.512 57.895 30.98 23.39 0.00 4.94
3827 4337 0.789383 GACCAAAATCTTCGCGCGTG 60.789 55.000 30.98 22.78 0.00 5.34
3828 4338 0.949105 AGACCAAAATCTTCGCGCGT 60.949 50.000 30.98 7.39 0.00 6.01
3829 4339 0.519175 CAGACCAAAATCTTCGCGCG 60.519 55.000 26.76 26.76 0.00 6.86
3830 4340 0.517316 ACAGACCAAAATCTTCGCGC 59.483 50.000 0.00 0.00 0.00 6.86
3831 4341 2.969443 AACAGACCAAAATCTTCGCG 57.031 45.000 0.00 0.00 0.00 5.87
3832 4342 4.223320 TCAAACAGACCAAAATCTTCGC 57.777 40.909 0.00 0.00 0.00 4.70
3833 4343 8.454106 AGATAATCAAACAGACCAAAATCTTCG 58.546 33.333 0.00 0.00 0.00 3.79
3834 4344 9.565213 CAGATAATCAAACAGACCAAAATCTTC 57.435 33.333 0.00 0.00 0.00 2.87
3835 4345 8.031277 GCAGATAATCAAACAGACCAAAATCTT 58.969 33.333 0.00 0.00 0.00 2.40
3836 4346 7.177216 TGCAGATAATCAAACAGACCAAAATCT 59.823 33.333 0.00 0.00 0.00 2.40
3837 4347 7.315142 TGCAGATAATCAAACAGACCAAAATC 58.685 34.615 0.00 0.00 0.00 2.17
3838 4348 7.230849 TGCAGATAATCAAACAGACCAAAAT 57.769 32.000 0.00 0.00 0.00 1.82
3839 4349 6.647334 TGCAGATAATCAAACAGACCAAAA 57.353 33.333 0.00 0.00 0.00 2.44
3840 4350 6.839124 ATGCAGATAATCAAACAGACCAAA 57.161 33.333 0.00 0.00 0.00 3.28
3841 4351 6.403527 CGAATGCAGATAATCAAACAGACCAA 60.404 38.462 0.00 0.00 0.00 3.67
3842 4352 5.065090 CGAATGCAGATAATCAAACAGACCA 59.935 40.000 0.00 0.00 0.00 4.02
3843 4353 5.505286 CGAATGCAGATAATCAAACAGACC 58.495 41.667 0.00 0.00 0.00 3.85
3844 4354 4.966366 GCGAATGCAGATAATCAAACAGAC 59.034 41.667 0.00 0.00 42.15 3.51
3845 4355 4.877823 AGCGAATGCAGATAATCAAACAGA 59.122 37.500 0.00 0.00 46.23 3.41
3846 4356 5.007430 AGAGCGAATGCAGATAATCAAACAG 59.993 40.000 0.00 0.00 46.23 3.16
3847 4357 4.877823 AGAGCGAATGCAGATAATCAAACA 59.122 37.500 0.00 0.00 46.23 2.83
3848 4358 5.415415 AGAGCGAATGCAGATAATCAAAC 57.585 39.130 0.00 0.00 46.23 2.93
3849 4359 7.552458 TTAAGAGCGAATGCAGATAATCAAA 57.448 32.000 0.00 0.00 46.23 2.69
3850 4360 6.293081 GCTTAAGAGCGAATGCAGATAATCAA 60.293 38.462 6.67 0.00 46.23 2.57
3851 4361 5.178252 GCTTAAGAGCGAATGCAGATAATCA 59.822 40.000 6.67 0.00 46.23 2.57
3852 4362 5.616658 GCTTAAGAGCGAATGCAGATAATC 58.383 41.667 6.67 0.00 46.23 1.75
3853 4363 5.604010 GCTTAAGAGCGAATGCAGATAAT 57.396 39.130 6.67 0.00 46.23 1.28
3876 4386 9.449550 CGATGCTTTAAAATTCATGCTATACAA 57.550 29.630 0.00 0.00 0.00 2.41
3877 4387 8.835439 TCGATGCTTTAAAATTCATGCTATACA 58.165 29.630 0.00 0.00 0.00 2.29
3878 4388 9.831737 ATCGATGCTTTAAAATTCATGCTATAC 57.168 29.630 0.00 0.00 0.00 1.47
3879 4389 9.830294 CATCGATGCTTTAAAATTCATGCTATA 57.170 29.630 13.37 0.00 0.00 1.31
3880 4390 7.811236 CCATCGATGCTTTAAAATTCATGCTAT 59.189 33.333 20.25 0.00 0.00 2.97
3881 4391 7.140705 CCATCGATGCTTTAAAATTCATGCTA 58.859 34.615 20.25 0.00 0.00 3.49
3882 4392 5.981315 CCATCGATGCTTTAAAATTCATGCT 59.019 36.000 20.25 0.00 0.00 3.79
3883 4393 5.176223 CCCATCGATGCTTTAAAATTCATGC 59.824 40.000 20.25 0.00 0.00 4.06
3884 4394 6.275335 ACCCATCGATGCTTTAAAATTCATG 58.725 36.000 20.25 0.94 0.00 3.07
3885 4395 6.322201 AGACCCATCGATGCTTTAAAATTCAT 59.678 34.615 20.25 0.00 0.00 2.57
3886 4396 5.652014 AGACCCATCGATGCTTTAAAATTCA 59.348 36.000 20.25 0.00 0.00 2.57
3887 4397 5.973565 CAGACCCATCGATGCTTTAAAATTC 59.026 40.000 20.25 4.93 0.00 2.17
3888 4398 5.679638 GCAGACCCATCGATGCTTTAAAATT 60.680 40.000 20.25 0.00 35.78 1.82
3889 4399 4.202050 GCAGACCCATCGATGCTTTAAAAT 60.202 41.667 20.25 0.00 35.78 1.82
3890 4400 3.128589 GCAGACCCATCGATGCTTTAAAA 59.871 43.478 20.25 0.00 35.78 1.52
3891 4401 2.682856 GCAGACCCATCGATGCTTTAAA 59.317 45.455 20.25 0.00 35.78 1.52
3892 4402 2.288666 GCAGACCCATCGATGCTTTAA 58.711 47.619 20.25 0.00 35.78 1.52
3893 4403 1.209261 TGCAGACCCATCGATGCTTTA 59.791 47.619 20.25 0.87 39.42 1.85
3894 4404 0.035152 TGCAGACCCATCGATGCTTT 60.035 50.000 20.25 5.62 39.42 3.51
3895 4405 0.182061 ATGCAGACCCATCGATGCTT 59.818 50.000 20.25 8.29 39.42 3.91
3896 4406 0.182061 AATGCAGACCCATCGATGCT 59.818 50.000 20.25 8.98 39.42 3.79
3897 4407 0.309922 CAATGCAGACCCATCGATGC 59.690 55.000 20.25 9.72 39.14 3.91
3898 4408 1.671979 ACAATGCAGACCCATCGATG 58.328 50.000 18.76 18.76 0.00 3.84
3899 4409 2.425143 AACAATGCAGACCCATCGAT 57.575 45.000 0.00 0.00 0.00 3.59
3900 4410 2.905075 CTAACAATGCAGACCCATCGA 58.095 47.619 0.00 0.00 0.00 3.59
3901 4411 1.331756 GCTAACAATGCAGACCCATCG 59.668 52.381 0.00 0.00 0.00 3.84
3902 4412 1.331756 CGCTAACAATGCAGACCCATC 59.668 52.381 0.00 0.00 0.00 3.51
3903 4413 1.340017 ACGCTAACAATGCAGACCCAT 60.340 47.619 0.00 0.00 0.00 4.00
3904 4414 0.036164 ACGCTAACAATGCAGACCCA 59.964 50.000 0.00 0.00 0.00 4.51
3905 4415 0.727398 GACGCTAACAATGCAGACCC 59.273 55.000 0.00 0.00 0.00 4.46
3906 4416 0.727398 GGACGCTAACAATGCAGACC 59.273 55.000 0.00 0.00 0.00 3.85
3907 4417 1.438651 TGGACGCTAACAATGCAGAC 58.561 50.000 0.00 0.00 0.00 3.51
3908 4418 2.177394 TTGGACGCTAACAATGCAGA 57.823 45.000 0.00 0.00 0.00 4.26
3909 4419 3.492421 AATTGGACGCTAACAATGCAG 57.508 42.857 0.00 0.00 37.38 4.41
3910 4420 3.573598 CAAATTGGACGCTAACAATGCA 58.426 40.909 0.00 0.00 37.38 3.96
3911 4421 2.923020 CCAAATTGGACGCTAACAATGC 59.077 45.455 6.04 0.00 40.96 3.56
3912 4422 4.082787 AGACCAAATTGGACGCTAACAATG 60.083 41.667 20.25 0.00 40.96 2.82
3913 4423 4.079253 AGACCAAATTGGACGCTAACAAT 58.921 39.130 20.25 0.00 40.96 2.71
3914 4424 3.482436 AGACCAAATTGGACGCTAACAA 58.518 40.909 20.25 0.00 40.96 2.83
3915 4425 3.134574 AGACCAAATTGGACGCTAACA 57.865 42.857 20.25 0.00 40.96 2.41
3916 4426 3.063588 GCTAGACCAAATTGGACGCTAAC 59.936 47.826 20.25 8.59 40.96 2.34
3917 4427 3.267483 GCTAGACCAAATTGGACGCTAA 58.733 45.455 20.25 0.90 40.96 3.09
3918 4428 2.419574 GGCTAGACCAAATTGGACGCTA 60.420 50.000 20.25 14.57 40.96 4.26
3919 4429 1.679032 GGCTAGACCAAATTGGACGCT 60.679 52.381 20.25 14.23 40.96 5.07
3920 4430 0.733150 GGCTAGACCAAATTGGACGC 59.267 55.000 20.25 11.88 40.96 5.19
3921 4431 1.339631 TGGGCTAGACCAAATTGGACG 60.340 52.381 17.39 2.06 40.96 4.79
3922 4432 2.092323 GTGGGCTAGACCAAATTGGAC 58.908 52.381 22.11 13.03 43.34 4.02
3923 4433 1.707989 TGTGGGCTAGACCAAATTGGA 59.292 47.619 22.11 0.00 43.34 3.53
3924 4434 1.818674 GTGTGGGCTAGACCAAATTGG 59.181 52.381 22.11 11.02 43.34 3.16
3925 4435 2.749621 GAGTGTGGGCTAGACCAAATTG 59.250 50.000 22.11 0.00 43.34 2.32
3926 4436 2.615493 CGAGTGTGGGCTAGACCAAATT 60.615 50.000 22.11 11.75 43.34 1.82
3927 4437 1.066143 CGAGTGTGGGCTAGACCAAAT 60.066 52.381 22.11 8.22 43.34 2.32
3928 4438 0.320374 CGAGTGTGGGCTAGACCAAA 59.680 55.000 22.11 12.61 43.34 3.28
3929 4439 1.972198 CGAGTGTGGGCTAGACCAA 59.028 57.895 22.11 7.19 43.34 3.67
3930 4440 2.646175 GCGAGTGTGGGCTAGACCA 61.646 63.158 15.37 15.37 42.05 4.02
3931 4441 2.184579 GCGAGTGTGGGCTAGACC 59.815 66.667 8.06 8.06 37.93 3.85
3932 4442 1.446272 GTGCGAGTGTGGGCTAGAC 60.446 63.158 0.00 0.00 0.00 2.59
3933 4443 1.906333 TGTGCGAGTGTGGGCTAGA 60.906 57.895 0.00 0.00 0.00 2.43
3934 4444 1.738099 GTGTGCGAGTGTGGGCTAG 60.738 63.158 0.00 0.00 0.00 3.42
3935 4445 2.342279 GTGTGCGAGTGTGGGCTA 59.658 61.111 0.00 0.00 0.00 3.93
3936 4446 4.969196 CGTGTGCGAGTGTGGGCT 62.969 66.667 0.00 0.00 41.33 5.19
3938 4448 2.587753 AACGTGTGCGAGTGTGGG 60.588 61.111 0.00 0.00 42.00 4.61
3939 4449 1.591594 AGAACGTGTGCGAGTGTGG 60.592 57.895 0.00 0.00 42.00 4.17
3940 4450 0.869880 TCAGAACGTGTGCGAGTGTG 60.870 55.000 0.00 0.00 42.00 3.82
3941 4451 0.179121 TTCAGAACGTGTGCGAGTGT 60.179 50.000 0.00 0.00 42.00 3.55
3942 4452 0.229753 GTTCAGAACGTGTGCGAGTG 59.770 55.000 0.00 0.00 42.00 3.51
3943 4453 2.589890 GTTCAGAACGTGTGCGAGT 58.410 52.632 0.00 0.00 42.00 4.18
3953 4463 0.230260 TGCGCGTAAACGTTCAGAAC 59.770 50.000 8.43 2.85 42.22 3.01
3954 4464 0.230260 GTGCGCGTAAACGTTCAGAA 59.770 50.000 8.43 0.00 42.22 3.02
3955 4465 0.870735 TGTGCGCGTAAACGTTCAGA 60.871 50.000 8.43 0.00 42.22 3.27
3956 4466 0.716926 GTGTGCGCGTAAACGTTCAG 60.717 55.000 8.43 0.00 42.22 3.02
3957 4467 1.273300 GTGTGCGCGTAAACGTTCA 59.727 52.632 8.43 0.00 42.22 3.18
3958 4468 1.437573 GGTGTGCGCGTAAACGTTC 60.438 57.895 11.51 0.00 42.22 3.95
3959 4469 2.627555 GGTGTGCGCGTAAACGTT 59.372 55.556 11.51 0.00 42.22 3.99
3960 4470 3.694394 CGGTGTGCGCGTAAACGT 61.694 61.111 11.51 0.00 42.22 3.99
3961 4471 3.396502 TCGGTGTGCGCGTAAACG 61.397 61.111 11.51 9.95 43.27 3.60
3962 4472 2.169327 GTCGGTGTGCGCGTAAAC 59.831 61.111 9.24 9.24 0.00 2.01
3963 4473 3.037249 GGTCGGTGTGCGCGTAAA 61.037 61.111 8.43 0.00 0.00 2.01
3964 4474 4.281947 TGGTCGGTGTGCGCGTAA 62.282 61.111 8.43 0.00 0.00 3.18
3965 4475 4.710695 CTGGTCGGTGTGCGCGTA 62.711 66.667 8.43 0.00 0.00 4.42
3967 4477 3.982372 ATACTGGTCGGTGTGCGCG 62.982 63.158 0.00 0.00 0.00 6.86
3968 4478 1.693083 GAATACTGGTCGGTGTGCGC 61.693 60.000 0.00 0.00 0.00 6.09
3969 4479 0.389296 TGAATACTGGTCGGTGTGCG 60.389 55.000 0.00 0.00 0.00 5.34
3970 4480 1.359848 CTGAATACTGGTCGGTGTGC 58.640 55.000 0.00 0.00 0.00 4.57
3971 4481 1.359848 GCTGAATACTGGTCGGTGTG 58.640 55.000 0.00 0.00 0.00 3.82
3972 4482 0.108804 CGCTGAATACTGGTCGGTGT 60.109 55.000 0.00 0.00 0.00 4.16
3973 4483 0.806102 CCGCTGAATACTGGTCGGTG 60.806 60.000 0.00 0.00 32.93 4.94
3974 4484 0.968901 TCCGCTGAATACTGGTCGGT 60.969 55.000 0.00 0.00 38.18 4.69
3975 4485 0.249073 CTCCGCTGAATACTGGTCGG 60.249 60.000 0.00 0.00 38.34 4.79
3976 4486 0.738975 TCTCCGCTGAATACTGGTCG 59.261 55.000 0.00 0.00 0.00 4.79
3977 4487 1.537135 GCTCTCCGCTGAATACTGGTC 60.537 57.143 0.00 0.00 35.14 4.02
3978 4488 0.461961 GCTCTCCGCTGAATACTGGT 59.538 55.000 0.00 0.00 35.14 4.00
3979 4489 0.249657 GGCTCTCCGCTGAATACTGG 60.250 60.000 0.00 0.00 39.13 4.00
3980 4490 0.249657 GGGCTCTCCGCTGAATACTG 60.250 60.000 0.00 0.00 39.13 2.74
3981 4491 2.128729 GGGCTCTCCGCTGAATACT 58.871 57.895 0.00 0.00 39.13 2.12
3982 4492 4.760757 GGGCTCTCCGCTGAATAC 57.239 61.111 0.00 0.00 39.13 1.89
3992 4502 1.680522 TTGAGATGGAGCGGGCTCTC 61.681 60.000 19.14 10.58 42.38 3.20
3993 4503 1.267574 TTTGAGATGGAGCGGGCTCT 61.268 55.000 19.14 1.38 42.38 4.09
3994 4504 0.392998 TTTTGAGATGGAGCGGGCTC 60.393 55.000 12.17 12.17 42.04 4.70
3995 4505 0.393537 CTTTTGAGATGGAGCGGGCT 60.394 55.000 0.00 0.00 0.00 5.19
3996 4506 1.379642 CCTTTTGAGATGGAGCGGGC 61.380 60.000 0.00 0.00 0.00 6.13
3997 4507 0.035056 ACCTTTTGAGATGGAGCGGG 60.035 55.000 0.00 0.00 0.00 6.13
3998 4508 1.373570 GACCTTTTGAGATGGAGCGG 58.626 55.000 0.00 0.00 0.00 5.52
3999 4509 1.002366 CGACCTTTTGAGATGGAGCG 58.998 55.000 0.00 0.00 0.00 5.03
4000 4510 1.373570 CCGACCTTTTGAGATGGAGC 58.626 55.000 0.00 0.00 0.00 4.70
4001 4511 2.014068 GCCCGACCTTTTGAGATGGAG 61.014 57.143 0.00 0.00 0.00 3.86
4002 4512 0.035439 GCCCGACCTTTTGAGATGGA 60.035 55.000 0.00 0.00 0.00 3.41
4003 4513 0.035056 AGCCCGACCTTTTGAGATGG 60.035 55.000 0.00 0.00 0.00 3.51
4004 4514 1.089920 CAGCCCGACCTTTTGAGATG 58.910 55.000 0.00 0.00 0.00 2.90
4005 4515 0.984230 TCAGCCCGACCTTTTGAGAT 59.016 50.000 0.00 0.00 0.00 2.75
4006 4516 0.762418 TTCAGCCCGACCTTTTGAGA 59.238 50.000 0.00 0.00 0.00 3.27
4007 4517 1.160137 CTTCAGCCCGACCTTTTGAG 58.840 55.000 0.00 0.00 0.00 3.02
4008 4518 0.762418 TCTTCAGCCCGACCTTTTGA 59.238 50.000 0.00 0.00 0.00 2.69
4009 4519 1.160137 CTCTTCAGCCCGACCTTTTG 58.840 55.000 0.00 0.00 0.00 2.44
4010 4520 1.002544 CTCTCTTCAGCCCGACCTTTT 59.997 52.381 0.00 0.00 0.00 2.27
4011 4521 0.610687 CTCTCTTCAGCCCGACCTTT 59.389 55.000 0.00 0.00 0.00 3.11
4012 4522 1.261238 CCTCTCTTCAGCCCGACCTT 61.261 60.000 0.00 0.00 0.00 3.50
4013 4523 1.684049 CCTCTCTTCAGCCCGACCT 60.684 63.158 0.00 0.00 0.00 3.85
4014 4524 1.258445 TTCCTCTCTTCAGCCCGACC 61.258 60.000 0.00 0.00 0.00 4.79
4015 4525 0.174617 CTTCCTCTCTTCAGCCCGAC 59.825 60.000 0.00 0.00 0.00 4.79
4016 4526 0.972983 CCTTCCTCTCTTCAGCCCGA 60.973 60.000 0.00 0.00 0.00 5.14
4017 4527 0.972983 TCCTTCCTCTCTTCAGCCCG 60.973 60.000 0.00 0.00 0.00 6.13
4018 4528 1.280457 TTCCTTCCTCTCTTCAGCCC 58.720 55.000 0.00 0.00 0.00 5.19
4019 4529 2.771372 AGATTCCTTCCTCTCTTCAGCC 59.229 50.000 0.00 0.00 0.00 4.85
4020 4530 3.706086 AGAGATTCCTTCCTCTCTTCAGC 59.294 47.826 0.00 0.00 44.51 4.26
4021 4531 5.520376 GAGAGATTCCTTCCTCTCTTCAG 57.480 47.826 11.02 0.00 46.32 3.02
4027 4537 3.246314 ACAAGGGAGAGATTCCTTCCTCT 60.246 47.826 3.30 0.00 45.98 3.69
4028 4538 3.111484 ACAAGGGAGAGATTCCTTCCTC 58.889 50.000 3.30 0.00 45.98 3.71
4029 4539 3.213160 ACAAGGGAGAGATTCCTTCCT 57.787 47.619 0.00 0.00 45.98 3.36
4030 4540 4.471747 ACTTACAAGGGAGAGATTCCTTCC 59.528 45.833 0.00 0.00 45.98 3.46
4031 4541 5.685520 ACTTACAAGGGAGAGATTCCTTC 57.314 43.478 0.00 0.00 45.98 3.46
4032 4542 5.280727 CCAACTTACAAGGGAGAGATTCCTT 60.281 44.000 0.00 0.00 45.98 3.36
4033 4543 4.226168 CCAACTTACAAGGGAGAGATTCCT 59.774 45.833 0.00 0.00 45.98 3.36
4034 4544 4.019231 ACCAACTTACAAGGGAGAGATTCC 60.019 45.833 0.00 0.00 46.00 3.01
4035 4545 5.167303 ACCAACTTACAAGGGAGAGATTC 57.833 43.478 0.00 0.00 0.00 2.52
4036 4546 5.163088 ACAACCAACTTACAAGGGAGAGATT 60.163 40.000 0.00 0.00 0.00 2.40
4037 4547 4.351111 ACAACCAACTTACAAGGGAGAGAT 59.649 41.667 0.00 0.00 0.00 2.75
4038 4548 3.714798 ACAACCAACTTACAAGGGAGAGA 59.285 43.478 0.00 0.00 0.00 3.10
4039 4549 3.815401 CACAACCAACTTACAAGGGAGAG 59.185 47.826 0.00 0.00 0.00 3.20
4040 4550 3.434453 CCACAACCAACTTACAAGGGAGA 60.434 47.826 0.00 0.00 0.00 3.71
4041 4551 2.884639 CCACAACCAACTTACAAGGGAG 59.115 50.000 0.00 0.00 0.00 4.30
4042 4552 2.938838 CCACAACCAACTTACAAGGGA 58.061 47.619 0.00 0.00 0.00 4.20
4043 4553 1.339929 GCCACAACCAACTTACAAGGG 59.660 52.381 0.00 0.00 0.00 3.95
4044 4554 1.339929 GGCCACAACCAACTTACAAGG 59.660 52.381 0.00 0.00 0.00 3.61
4045 4555 2.293399 GAGGCCACAACCAACTTACAAG 59.707 50.000 5.01 0.00 0.00 3.16
4046 4556 2.303175 GAGGCCACAACCAACTTACAA 58.697 47.619 5.01 0.00 0.00 2.41
4047 4557 1.975660 GAGGCCACAACCAACTTACA 58.024 50.000 5.01 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.