Multiple sequence alignment - TraesCS2B01G411600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G411600 chr2B 100.000 2560 0 0 1 2560 585889214 585891773 0.000000e+00 4728.0
1 TraesCS2B01G411600 chr2B 85.057 87 9 4 2429 2513 625260842 625260758 4.540000e-13 86.1
2 TraesCS2B01G411600 chr2D 92.182 857 43 8 732 1567 498766635 498767488 0.000000e+00 1190.0
3 TraesCS2B01G411600 chr2D 91.092 696 48 5 1870 2560 498767807 498768493 0.000000e+00 929.0
4 TraesCS2B01G411600 chr2D 85.270 611 42 28 805 1383 527648429 527647835 1.020000e-163 586.0
5 TraesCS2B01G411600 chr2D 85.329 593 45 28 811 1387 528994490 528995056 2.210000e-160 575.0
6 TraesCS2B01G411600 chr2D 84.354 588 62 20 811 1388 527804794 527804227 1.340000e-152 549.0
7 TraesCS2B01G411600 chr2D 87.793 213 20 5 158 369 498730985 498731192 7.080000e-61 244.0
8 TraesCS2B01G411600 chr2A 91.246 674 35 11 739 1388 643438139 643438812 0.000000e+00 896.0
9 TraesCS2B01G411600 chr2A 86.499 674 70 11 1559 2224 643439077 643439737 0.000000e+00 721.0
10 TraesCS2B01G411600 chr2A 84.893 609 43 29 809 1389 673451875 673452462 1.030000e-158 569.0
11 TraesCS2B01G411600 chr2A 84.359 601 52 26 804 1384 673419732 673420310 3.720000e-153 551.0
12 TraesCS2B01G411600 chr2A 91.202 341 16 8 2223 2560 643439863 643440192 3.880000e-123 451.0
13 TraesCS2B01G411600 chr2A 83.696 368 37 11 368 718 643437327 643437688 2.460000e-85 326.0
14 TraesCS2B01G411600 chr2A 88.235 153 7 9 1428 1577 643438811 643438955 3.390000e-39 172.0
15 TraesCS2B01G411600 chr7D 95.129 349 11 5 1063 1405 134467046 134466698 1.730000e-151 545.0
16 TraesCS2B01G411600 chr7D 79.562 137 14 7 2434 2560 134466261 134466129 4.540000e-13 86.1
17 TraesCS2B01G411600 chr7A 96.636 327 11 0 1063 1389 133627440 133627114 6.230000e-151 544.0
18 TraesCS2B01G411600 chr4B 87.432 183 20 3 1 181 313108768 313108587 9.280000e-50 207.0
19 TraesCS2B01G411600 chr4B 88.889 162 13 4 2 161 13201836 13201678 7.230000e-46 195.0
20 TraesCS2B01G411600 chr5D 95.349 43 2 0 386 428 232600049 232600091 4.570000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G411600 chr2B 585889214 585891773 2559 False 4728.00 4728 100.0000 1 2560 1 chr2B.!!$F1 2559
1 TraesCS2B01G411600 chr2D 498766635 498768493 1858 False 1059.50 1190 91.6370 732 2560 2 chr2D.!!$F3 1828
2 TraesCS2B01G411600 chr2D 527647835 527648429 594 True 586.00 586 85.2700 805 1383 1 chr2D.!!$R1 578
3 TraesCS2B01G411600 chr2D 528994490 528995056 566 False 575.00 575 85.3290 811 1387 1 chr2D.!!$F2 576
4 TraesCS2B01G411600 chr2D 527804227 527804794 567 True 549.00 549 84.3540 811 1388 1 chr2D.!!$R2 577
5 TraesCS2B01G411600 chr2A 673451875 673452462 587 False 569.00 569 84.8930 809 1389 1 chr2A.!!$F2 580
6 TraesCS2B01G411600 chr2A 673419732 673420310 578 False 551.00 551 84.3590 804 1384 1 chr2A.!!$F1 580
7 TraesCS2B01G411600 chr2A 643437327 643440192 2865 False 513.20 896 88.1756 368 2560 5 chr2A.!!$F3 2192
8 TraesCS2B01G411600 chr7D 134466129 134467046 917 True 315.55 545 87.3455 1063 2560 2 chr7D.!!$R1 1497

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
720 738 0.100682 CATACCGTCCTGACCGACAG 59.899 60.0 3.25 3.25 45.36 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1906 2686 1.609208 AAACCAGATTCAACGCAGCT 58.391 45.0 0.0 0.0 0.0 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.087892 CCGGTGCTCCTCCAGGTG 62.088 72.222 2.85 0.00 36.34 4.00
29 30 4.459089 GCTCCTCCAGGTGCCGTC 62.459 72.222 8.26 0.00 46.01 4.79
30 31 4.135153 CTCCTCCAGGTGCCGTCG 62.135 72.222 0.00 0.00 36.34 5.12
36 37 4.530857 CAGGTGCCGTCGGGGATC 62.531 72.222 14.38 0.00 38.47 3.36
39 40 4.446413 GTGCCGTCGGGGATCGTT 62.446 66.667 14.38 0.00 38.47 3.85
40 41 4.444838 TGCCGTCGGGGATCGTTG 62.445 66.667 14.38 0.00 38.47 4.10
42 43 4.143333 CCGTCGGGGATCGTTGCT 62.143 66.667 2.34 0.00 38.47 3.91
43 44 2.582498 CGTCGGGGATCGTTGCTC 60.582 66.667 0.00 0.00 40.32 4.26
44 45 2.202892 GTCGGGGATCGTTGCTCC 60.203 66.667 0.00 0.00 40.32 4.70
45 46 2.682136 TCGGGGATCGTTGCTCCA 60.682 61.111 0.00 0.00 40.32 3.86
46 47 2.063979 TCGGGGATCGTTGCTCCAT 61.064 57.895 0.00 0.00 40.32 3.41
47 48 1.889105 CGGGGATCGTTGCTCCATG 60.889 63.158 0.00 0.00 34.24 3.66
48 49 2.189499 GGGGATCGTTGCTCCATGC 61.189 63.158 0.00 0.00 43.25 4.06
58 59 2.614581 GCTCCATGCAGATCCTTCG 58.385 57.895 0.00 0.00 42.31 3.79
59 60 0.105593 GCTCCATGCAGATCCTTCGA 59.894 55.000 0.00 0.00 42.31 3.71
60 61 1.873069 GCTCCATGCAGATCCTTCGAG 60.873 57.143 0.00 0.00 42.31 4.04
61 62 1.685517 CTCCATGCAGATCCTTCGAGA 59.314 52.381 0.00 0.00 0.00 4.04
62 63 1.410517 TCCATGCAGATCCTTCGAGAC 59.589 52.381 0.00 0.00 0.00 3.36
63 64 1.485397 CATGCAGATCCTTCGAGACG 58.515 55.000 0.00 0.00 0.00 4.18
64 65 0.387202 ATGCAGATCCTTCGAGACGG 59.613 55.000 0.00 0.00 0.00 4.79
65 66 1.066587 GCAGATCCTTCGAGACGGG 59.933 63.158 0.00 0.00 0.00 5.28
66 67 1.736586 CAGATCCTTCGAGACGGGG 59.263 63.158 0.00 0.00 0.00 5.73
67 68 1.038130 CAGATCCTTCGAGACGGGGT 61.038 60.000 0.00 0.00 0.00 4.95
68 69 0.752376 AGATCCTTCGAGACGGGGTC 60.752 60.000 0.00 0.00 0.00 4.46
69 70 1.736365 GATCCTTCGAGACGGGGTCC 61.736 65.000 0.00 0.00 32.18 4.46
70 71 2.226149 ATCCTTCGAGACGGGGTCCT 62.226 60.000 0.00 0.00 32.18 3.85
71 72 2.416432 CCTTCGAGACGGGGTCCTC 61.416 68.421 0.00 0.00 32.18 3.71
72 73 2.362120 TTCGAGACGGGGTCCTCC 60.362 66.667 0.00 0.00 32.18 4.30
73 74 2.840467 CTTCGAGACGGGGTCCTCCT 62.840 65.000 0.00 0.00 32.18 3.69
74 75 2.829458 CGAGACGGGGTCCTCCTC 60.829 72.222 0.00 0.00 32.18 3.71
75 76 2.442458 GAGACGGGGTCCTCCTCC 60.442 72.222 0.00 0.00 32.18 4.30
76 77 4.444081 AGACGGGGTCCTCCTCCG 62.444 72.222 0.00 0.00 45.94 4.63
79 80 4.133373 CGGGGTCCTCCTCCGGTA 62.133 72.222 0.00 0.00 40.95 4.02
80 81 2.613421 GGGGTCCTCCTCCGGTAT 59.387 66.667 0.00 0.00 35.33 2.73
81 82 1.533513 GGGGTCCTCCTCCGGTATC 60.534 68.421 0.00 0.00 35.33 2.24
82 83 1.542679 GGGTCCTCCTCCGGTATCT 59.457 63.158 0.00 0.00 0.00 1.98
83 84 0.540133 GGGTCCTCCTCCGGTATCTC 60.540 65.000 0.00 0.00 0.00 2.75
84 85 0.540133 GGTCCTCCTCCGGTATCTCC 60.540 65.000 0.00 0.00 0.00 3.71
85 86 0.540133 GTCCTCCTCCGGTATCTCCC 60.540 65.000 0.00 0.00 0.00 4.30
86 87 0.701659 TCCTCCTCCGGTATCTCCCT 60.702 60.000 0.00 0.00 0.00 4.20
87 88 0.188834 CCTCCTCCGGTATCTCCCTT 59.811 60.000 0.00 0.00 0.00 3.95
88 89 1.623163 CTCCTCCGGTATCTCCCTTC 58.377 60.000 0.00 0.00 0.00 3.46
89 90 0.187851 TCCTCCGGTATCTCCCTTCC 59.812 60.000 0.00 0.00 0.00 3.46
90 91 0.832559 CCTCCGGTATCTCCCTTCCC 60.833 65.000 0.00 0.00 0.00 3.97
91 92 0.832559 CTCCGGTATCTCCCTTCCCC 60.833 65.000 0.00 0.00 0.00 4.81
92 93 1.842010 CCGGTATCTCCCTTCCCCC 60.842 68.421 0.00 0.00 0.00 5.40
93 94 1.236282 CGGTATCTCCCTTCCCCCT 59.764 63.158 0.00 0.00 0.00 4.79
94 95 0.832559 CGGTATCTCCCTTCCCCCTC 60.833 65.000 0.00 0.00 0.00 4.30
95 96 0.568697 GGTATCTCCCTTCCCCCTCT 59.431 60.000 0.00 0.00 0.00 3.69
96 97 1.483496 GGTATCTCCCTTCCCCCTCTC 60.483 61.905 0.00 0.00 0.00 3.20
97 98 1.505977 GTATCTCCCTTCCCCCTCTCT 59.494 57.143 0.00 0.00 0.00 3.10
98 99 1.942882 ATCTCCCTTCCCCCTCTCTA 58.057 55.000 0.00 0.00 0.00 2.43
99 100 1.942882 TCTCCCTTCCCCCTCTCTAT 58.057 55.000 0.00 0.00 0.00 1.98
100 101 1.790157 TCTCCCTTCCCCCTCTCTATC 59.210 57.143 0.00 0.00 0.00 2.08
101 102 1.792651 CTCCCTTCCCCCTCTCTATCT 59.207 57.143 0.00 0.00 0.00 1.98
102 103 2.181196 CTCCCTTCCCCCTCTCTATCTT 59.819 54.545 0.00 0.00 0.00 2.40
103 104 2.597304 TCCCTTCCCCCTCTCTATCTTT 59.403 50.000 0.00 0.00 0.00 2.52
104 105 3.015275 TCCCTTCCCCCTCTCTATCTTTT 59.985 47.826 0.00 0.00 0.00 2.27
105 106 3.392947 CCCTTCCCCCTCTCTATCTTTTC 59.607 52.174 0.00 0.00 0.00 2.29
106 107 4.040755 CCTTCCCCCTCTCTATCTTTTCA 58.959 47.826 0.00 0.00 0.00 2.69
107 108 4.141597 CCTTCCCCCTCTCTATCTTTTCAC 60.142 50.000 0.00 0.00 0.00 3.18
108 109 4.354208 TCCCCCTCTCTATCTTTTCACT 57.646 45.455 0.00 0.00 0.00 3.41
109 110 4.290942 TCCCCCTCTCTATCTTTTCACTC 58.709 47.826 0.00 0.00 0.00 3.51
110 111 3.389656 CCCCCTCTCTATCTTTTCACTCC 59.610 52.174 0.00 0.00 0.00 3.85
111 112 4.033709 CCCCTCTCTATCTTTTCACTCCA 58.966 47.826 0.00 0.00 0.00 3.86
112 113 4.657969 CCCCTCTCTATCTTTTCACTCCAT 59.342 45.833 0.00 0.00 0.00 3.41
113 114 5.454471 CCCCTCTCTATCTTTTCACTCCATG 60.454 48.000 0.00 0.00 0.00 3.66
114 115 5.454471 CCCTCTCTATCTTTTCACTCCATGG 60.454 48.000 4.97 4.97 0.00 3.66
115 116 5.365025 CCTCTCTATCTTTTCACTCCATGGA 59.635 44.000 15.27 15.27 0.00 3.41
116 117 6.043012 CCTCTCTATCTTTTCACTCCATGGAT 59.957 42.308 16.63 2.66 0.00 3.41
117 118 7.234371 CCTCTCTATCTTTTCACTCCATGGATA 59.766 40.741 16.63 0.69 0.00 2.59
118 119 7.957002 TCTCTATCTTTTCACTCCATGGATAC 58.043 38.462 16.63 0.00 0.00 2.24
136 137 7.563724 TGGATACACTTCTAGTTTTTAGGGT 57.436 36.000 0.00 0.00 46.17 4.34
137 138 7.981142 TGGATACACTTCTAGTTTTTAGGGTT 58.019 34.615 0.00 0.00 46.17 4.11
138 139 8.098912 TGGATACACTTCTAGTTTTTAGGGTTC 58.901 37.037 0.00 0.00 46.17 3.62
139 140 7.551974 GGATACACTTCTAGTTTTTAGGGTTCC 59.448 40.741 0.00 0.00 0.00 3.62
140 141 6.511017 ACACTTCTAGTTTTTAGGGTTCCT 57.489 37.500 0.00 0.00 37.71 3.36
141 142 6.531923 ACACTTCTAGTTTTTAGGGTTCCTC 58.468 40.000 0.00 0.00 34.61 3.71
142 143 6.329460 ACACTTCTAGTTTTTAGGGTTCCTCT 59.671 38.462 0.00 0.00 34.61 3.69
143 144 7.147355 ACACTTCTAGTTTTTAGGGTTCCTCTT 60.147 37.037 0.00 0.00 34.61 2.85
144 145 7.720074 CACTTCTAGTTTTTAGGGTTCCTCTTT 59.280 37.037 0.00 0.00 34.61 2.52
145 146 7.720074 ACTTCTAGTTTTTAGGGTTCCTCTTTG 59.280 37.037 0.00 0.00 34.61 2.77
146 147 7.383156 TCTAGTTTTTAGGGTTCCTCTTTGA 57.617 36.000 0.00 0.00 34.61 2.69
147 148 7.985589 TCTAGTTTTTAGGGTTCCTCTTTGAT 58.014 34.615 0.00 0.00 34.61 2.57
148 149 8.101419 TCTAGTTTTTAGGGTTCCTCTTTGATC 58.899 37.037 0.00 0.00 34.61 2.92
149 150 6.853490 AGTTTTTAGGGTTCCTCTTTGATCT 58.147 36.000 0.00 0.00 34.61 2.75
150 151 6.943146 AGTTTTTAGGGTTCCTCTTTGATCTC 59.057 38.462 0.00 0.00 34.61 2.75
151 152 6.704056 TTTTAGGGTTCCTCTTTGATCTCT 57.296 37.500 0.00 0.00 34.61 3.10
152 153 7.808279 TTTTAGGGTTCCTCTTTGATCTCTA 57.192 36.000 0.00 0.00 34.61 2.43
153 154 7.425224 TTTAGGGTTCCTCTTTGATCTCTAG 57.575 40.000 0.00 0.00 34.61 2.43
154 155 4.954089 AGGGTTCCTCTTTGATCTCTAGT 58.046 43.478 0.00 0.00 0.00 2.57
155 156 4.959839 AGGGTTCCTCTTTGATCTCTAGTC 59.040 45.833 0.00 0.00 0.00 2.59
156 157 4.959839 GGGTTCCTCTTTGATCTCTAGTCT 59.040 45.833 0.00 0.00 0.00 3.24
157 158 6.068735 AGGGTTCCTCTTTGATCTCTAGTCTA 60.069 42.308 0.00 0.00 0.00 2.59
158 159 6.264518 GGGTTCCTCTTTGATCTCTAGTCTAG 59.735 46.154 0.00 0.00 0.00 2.43
159 160 6.264518 GGTTCCTCTTTGATCTCTAGTCTAGG 59.735 46.154 7.05 0.00 0.00 3.02
160 161 5.947663 TCCTCTTTGATCTCTAGTCTAGGG 58.052 45.833 7.05 3.54 0.00 3.53
161 162 5.672653 TCCTCTTTGATCTCTAGTCTAGGGA 59.327 44.000 11.97 11.97 40.13 4.20
162 163 6.003950 CCTCTTTGATCTCTAGTCTAGGGAG 58.996 48.000 14.78 3.08 38.99 4.30
163 164 5.947663 TCTTTGATCTCTAGTCTAGGGAGG 58.052 45.833 14.78 3.67 38.99 4.30
164 165 5.433712 TCTTTGATCTCTAGTCTAGGGAGGT 59.566 44.000 14.78 0.00 38.99 3.85
165 166 6.620267 TCTTTGATCTCTAGTCTAGGGAGGTA 59.380 42.308 14.78 1.66 38.99 3.08
166 167 6.442541 TTGATCTCTAGTCTAGGGAGGTAG 57.557 45.833 14.78 0.79 38.99 3.18
167 168 5.478844 TGATCTCTAGTCTAGGGAGGTAGT 58.521 45.833 14.78 0.00 38.99 2.73
168 169 5.308497 TGATCTCTAGTCTAGGGAGGTAGTG 59.692 48.000 14.78 0.00 38.99 2.74
169 170 3.391955 TCTCTAGTCTAGGGAGGTAGTGC 59.608 52.174 5.26 0.00 30.22 4.40
170 171 3.393278 CTCTAGTCTAGGGAGGTAGTGCT 59.607 52.174 0.00 0.00 0.00 4.40
171 172 2.445682 AGTCTAGGGAGGTAGTGCTG 57.554 55.000 0.00 0.00 0.00 4.41
172 173 0.747852 GTCTAGGGAGGTAGTGCTGC 59.252 60.000 0.00 0.00 0.00 5.25
173 174 0.335019 TCTAGGGAGGTAGTGCTGCA 59.665 55.000 0.00 0.00 0.00 4.41
174 175 1.062886 TCTAGGGAGGTAGTGCTGCAT 60.063 52.381 5.27 0.00 0.00 3.96
175 176 2.177016 TCTAGGGAGGTAGTGCTGCATA 59.823 50.000 5.27 0.00 0.00 3.14
176 177 1.418334 AGGGAGGTAGTGCTGCATAG 58.582 55.000 5.27 0.00 0.00 2.23
177 178 1.123928 GGGAGGTAGTGCTGCATAGT 58.876 55.000 5.27 0.00 0.00 2.12
178 179 2.091278 AGGGAGGTAGTGCTGCATAGTA 60.091 50.000 5.27 0.00 0.00 1.82
179 180 2.297597 GGGAGGTAGTGCTGCATAGTAG 59.702 54.545 5.27 0.00 0.00 2.57
180 181 3.223435 GGAGGTAGTGCTGCATAGTAGA 58.777 50.000 5.27 0.00 0.00 2.59
181 182 3.004944 GGAGGTAGTGCTGCATAGTAGAC 59.995 52.174 5.27 0.00 0.00 2.59
182 183 3.886505 GAGGTAGTGCTGCATAGTAGACT 59.113 47.826 5.27 0.00 0.00 3.24
183 184 4.282496 AGGTAGTGCTGCATAGTAGACTT 58.718 43.478 5.27 0.00 0.00 3.01
184 185 5.446860 AGGTAGTGCTGCATAGTAGACTTA 58.553 41.667 5.27 0.00 0.00 2.24
185 186 5.892119 AGGTAGTGCTGCATAGTAGACTTAA 59.108 40.000 5.27 0.00 0.00 1.85
186 187 5.978322 GGTAGTGCTGCATAGTAGACTTAAC 59.022 44.000 5.27 0.00 0.00 2.01
187 188 5.923733 AGTGCTGCATAGTAGACTTAACT 57.076 39.130 5.27 0.00 0.00 2.24
188 189 7.013083 GGTAGTGCTGCATAGTAGACTTAACTA 59.987 40.741 5.27 0.00 34.11 2.24
189 190 7.033530 AGTGCTGCATAGTAGACTTAACTAG 57.966 40.000 5.27 0.00 33.15 2.57
190 191 6.039941 AGTGCTGCATAGTAGACTTAACTAGG 59.960 42.308 5.27 0.00 35.02 3.02
198 199 9.817809 CATAGTAGACTTAACTAGGCAATTTGA 57.182 33.333 0.00 0.00 32.58 2.69
200 201 6.819146 AGTAGACTTAACTAGGCAATTTGAGC 59.181 38.462 0.00 0.00 32.58 4.26
201 202 5.560724 AGACTTAACTAGGCAATTTGAGCA 58.439 37.500 0.00 0.00 32.58 4.26
202 203 5.412904 AGACTTAACTAGGCAATTTGAGCAC 59.587 40.000 0.00 0.00 32.58 4.40
203 204 4.154195 ACTTAACTAGGCAATTTGAGCACG 59.846 41.667 0.00 0.00 0.00 5.34
204 205 2.472695 ACTAGGCAATTTGAGCACGA 57.527 45.000 0.00 0.00 0.00 4.35
205 206 2.991250 ACTAGGCAATTTGAGCACGAT 58.009 42.857 0.00 0.00 0.00 3.73
206 207 2.679837 ACTAGGCAATTTGAGCACGATG 59.320 45.455 0.00 0.00 0.00 3.84
207 208 1.538047 AGGCAATTTGAGCACGATGT 58.462 45.000 0.00 0.00 0.00 3.06
208 209 1.888512 AGGCAATTTGAGCACGATGTT 59.111 42.857 0.00 0.00 0.00 2.71
209 210 2.297033 AGGCAATTTGAGCACGATGTTT 59.703 40.909 0.00 0.00 0.00 2.83
210 211 3.505680 AGGCAATTTGAGCACGATGTTTA 59.494 39.130 0.00 0.00 0.00 2.01
211 212 3.853671 GGCAATTTGAGCACGATGTTTAG 59.146 43.478 0.00 0.00 0.00 1.85
212 213 4.379394 GGCAATTTGAGCACGATGTTTAGA 60.379 41.667 0.00 0.00 0.00 2.10
213 214 4.790140 GCAATTTGAGCACGATGTTTAGAG 59.210 41.667 0.00 0.00 0.00 2.43
214 215 4.606457 ATTTGAGCACGATGTTTAGAGC 57.394 40.909 0.00 0.00 0.00 4.09
215 216 2.010145 TGAGCACGATGTTTAGAGCC 57.990 50.000 0.00 0.00 0.00 4.70
216 217 0.924090 GAGCACGATGTTTAGAGCCG 59.076 55.000 0.00 0.00 0.00 5.52
217 218 0.530744 AGCACGATGTTTAGAGCCGA 59.469 50.000 0.00 0.00 0.00 5.54
218 219 0.924090 GCACGATGTTTAGAGCCGAG 59.076 55.000 0.00 0.00 0.00 4.63
219 220 1.469251 GCACGATGTTTAGAGCCGAGA 60.469 52.381 0.00 0.00 0.00 4.04
220 221 2.186076 CACGATGTTTAGAGCCGAGAC 58.814 52.381 0.00 0.00 0.00 3.36
221 222 1.816835 ACGATGTTTAGAGCCGAGACA 59.183 47.619 0.00 0.00 0.00 3.41
222 223 2.230508 ACGATGTTTAGAGCCGAGACAA 59.769 45.455 0.00 0.00 0.00 3.18
223 224 2.599082 CGATGTTTAGAGCCGAGACAAC 59.401 50.000 0.00 0.00 0.00 3.32
224 225 3.673594 CGATGTTTAGAGCCGAGACAACT 60.674 47.826 0.00 0.00 0.00 3.16
225 226 3.299340 TGTTTAGAGCCGAGACAACTC 57.701 47.619 0.00 0.00 39.54 3.01
226 227 2.891580 TGTTTAGAGCCGAGACAACTCT 59.108 45.455 0.00 0.00 43.12 3.24
227 228 3.057456 TGTTTAGAGCCGAGACAACTCTC 60.057 47.826 0.00 0.00 41.03 3.20
233 234 4.580835 GAGACAACTCTCGGTGGC 57.419 61.111 0.00 0.00 39.78 5.01
234 235 1.666011 GAGACAACTCTCGGTGGCA 59.334 57.895 0.00 0.00 39.78 4.92
235 236 0.389166 GAGACAACTCTCGGTGGCAG 60.389 60.000 0.00 0.00 39.78 4.85
236 237 0.827925 AGACAACTCTCGGTGGCAGA 60.828 55.000 0.00 0.00 0.00 4.26
237 238 0.389166 GACAACTCTCGGTGGCAGAG 60.389 60.000 0.00 0.00 42.84 3.35
238 239 1.739562 CAACTCTCGGTGGCAGAGC 60.740 63.158 1.73 0.00 41.13 4.09
239 240 2.210013 AACTCTCGGTGGCAGAGCA 61.210 57.895 1.73 0.00 41.13 4.26
240 241 1.548357 AACTCTCGGTGGCAGAGCAT 61.548 55.000 1.73 0.00 41.13 3.79
241 242 1.220206 CTCTCGGTGGCAGAGCATT 59.780 57.895 0.00 0.00 35.79 3.56
242 243 1.078918 TCTCGGTGGCAGAGCATTG 60.079 57.895 0.00 0.00 35.79 2.82
243 244 2.046023 TCGGTGGCAGAGCATTGG 60.046 61.111 0.00 0.00 0.00 3.16
244 245 3.818787 CGGTGGCAGAGCATTGGC 61.819 66.667 7.02 7.02 43.38 4.52
260 261 5.520022 CATTGGCTATGCTTCAACAAAAC 57.480 39.130 0.00 0.00 0.00 2.43
261 262 4.935352 TTGGCTATGCTTCAACAAAACT 57.065 36.364 0.00 0.00 0.00 2.66
262 263 4.935352 TGGCTATGCTTCAACAAAACTT 57.065 36.364 0.00 0.00 0.00 2.66
263 264 6.398234 TTGGCTATGCTTCAACAAAACTTA 57.602 33.333 0.00 0.00 0.00 2.24
264 265 5.768317 TGGCTATGCTTCAACAAAACTTAC 58.232 37.500 0.00 0.00 0.00 2.34
265 266 5.300539 TGGCTATGCTTCAACAAAACTTACA 59.699 36.000 0.00 0.00 0.00 2.41
266 267 5.629435 GGCTATGCTTCAACAAAACTTACAC 59.371 40.000 0.00 0.00 0.00 2.90
267 268 6.438763 GCTATGCTTCAACAAAACTTACACT 58.561 36.000 0.00 0.00 0.00 3.55
268 269 6.918022 GCTATGCTTCAACAAAACTTACACTT 59.082 34.615 0.00 0.00 0.00 3.16
269 270 8.073768 GCTATGCTTCAACAAAACTTACACTTA 58.926 33.333 0.00 0.00 0.00 2.24
270 271 9.382244 CTATGCTTCAACAAAACTTACACTTAC 57.618 33.333 0.00 0.00 0.00 2.34
271 272 7.385778 TGCTTCAACAAAACTTACACTTACT 57.614 32.000 0.00 0.00 0.00 2.24
272 273 7.822658 TGCTTCAACAAAACTTACACTTACTT 58.177 30.769 0.00 0.00 0.00 2.24
273 274 8.301002 TGCTTCAACAAAACTTACACTTACTTT 58.699 29.630 0.00 0.00 0.00 2.66
274 275 9.135843 GCTTCAACAAAACTTACACTTACTTTT 57.864 29.630 0.00 0.00 0.00 2.27
294 295 5.809719 TTTTTGAGGGAAACAAAACATGC 57.190 34.783 0.00 0.00 43.62 4.06
295 296 4.478206 TTTGAGGGAAACAAAACATGCA 57.522 36.364 0.00 0.00 34.89 3.96
296 297 3.451141 TGAGGGAAACAAAACATGCAC 57.549 42.857 0.00 0.00 0.00 4.57
297 298 3.030291 TGAGGGAAACAAAACATGCACT 58.970 40.909 0.00 0.00 0.00 4.40
298 299 3.068024 TGAGGGAAACAAAACATGCACTC 59.932 43.478 0.00 0.00 0.00 3.51
299 300 2.365293 AGGGAAACAAAACATGCACTCC 59.635 45.455 0.00 0.00 0.00 3.85
300 301 2.102252 GGGAAACAAAACATGCACTCCA 59.898 45.455 0.00 0.00 0.00 3.86
301 302 3.123050 GGAAACAAAACATGCACTCCAC 58.877 45.455 0.00 0.00 0.00 4.02
302 303 3.430098 GGAAACAAAACATGCACTCCACA 60.430 43.478 0.00 0.00 0.00 4.17
303 304 3.883830 AACAAAACATGCACTCCACAA 57.116 38.095 0.00 0.00 0.00 3.33
304 305 3.163630 ACAAAACATGCACTCCACAAC 57.836 42.857 0.00 0.00 0.00 3.32
305 306 2.495270 ACAAAACATGCACTCCACAACA 59.505 40.909 0.00 0.00 0.00 3.33
306 307 3.117794 CAAAACATGCACTCCACAACAG 58.882 45.455 0.00 0.00 0.00 3.16
307 308 2.346766 AACATGCACTCCACAACAGA 57.653 45.000 0.00 0.00 0.00 3.41
308 309 1.888215 ACATGCACTCCACAACAGAG 58.112 50.000 0.00 0.00 37.39 3.35
309 310 1.417517 ACATGCACTCCACAACAGAGA 59.582 47.619 0.00 0.00 35.27 3.10
310 311 2.158769 ACATGCACTCCACAACAGAGAA 60.159 45.455 0.00 0.00 35.27 2.87
311 312 2.245159 TGCACTCCACAACAGAGAAG 57.755 50.000 0.00 0.00 35.27 2.85
312 313 1.202687 TGCACTCCACAACAGAGAAGG 60.203 52.381 0.00 0.00 35.27 3.46
313 314 1.879796 GCACTCCACAACAGAGAAGGG 60.880 57.143 0.00 0.00 35.27 3.95
314 315 1.417890 CACTCCACAACAGAGAAGGGT 59.582 52.381 0.00 0.00 35.27 4.34
315 316 1.694696 ACTCCACAACAGAGAAGGGTC 59.305 52.381 0.00 0.00 35.27 4.46
316 317 1.694150 CTCCACAACAGAGAAGGGTCA 59.306 52.381 0.00 0.00 32.86 4.02
317 318 1.416401 TCCACAACAGAGAAGGGTCAC 59.584 52.381 0.00 0.00 0.00 3.67
318 319 1.543429 CCACAACAGAGAAGGGTCACC 60.543 57.143 0.00 0.00 0.00 4.02
329 330 3.109847 GGGTCACCTGTGAAAAGCA 57.890 52.632 0.75 0.00 41.85 3.91
330 331 1.620822 GGGTCACCTGTGAAAAGCAT 58.379 50.000 0.75 0.00 41.85 3.79
331 332 1.963515 GGGTCACCTGTGAAAAGCATT 59.036 47.619 0.75 0.00 41.85 3.56
332 333 2.365293 GGGTCACCTGTGAAAAGCATTT 59.635 45.455 0.75 0.00 41.85 2.32
344 345 2.507339 AAGCATTTTTGGACACACGG 57.493 45.000 0.00 0.00 0.00 4.94
345 346 0.673437 AGCATTTTTGGACACACGGG 59.327 50.000 0.00 0.00 0.00 5.28
346 347 0.387565 GCATTTTTGGACACACGGGT 59.612 50.000 0.00 0.00 0.00 5.28
347 348 6.992755 AAAGCATTTTTGGACACACGGGTG 62.993 45.833 18.21 18.21 43.34 4.61
355 356 4.043168 CACACGGGTGTCCTGAAC 57.957 61.111 10.41 0.00 42.83 3.18
356 357 1.954146 CACACGGGTGTCCTGAACG 60.954 63.158 10.41 0.00 42.83 3.95
357 358 3.041940 CACGGGTGTCCTGAACGC 61.042 66.667 1.33 0.00 37.67 4.84
358 359 3.231736 ACGGGTGTCCTGAACGCT 61.232 61.111 1.33 0.00 38.49 5.07
359 360 2.030562 CGGGTGTCCTGAACGCTT 59.969 61.111 0.00 0.00 38.49 4.68
360 361 1.597027 CGGGTGTCCTGAACGCTTT 60.597 57.895 0.00 0.00 38.49 3.51
361 362 0.320073 CGGGTGTCCTGAACGCTTTA 60.320 55.000 0.00 0.00 38.49 1.85
362 363 1.674817 CGGGTGTCCTGAACGCTTTAT 60.675 52.381 0.00 0.00 38.49 1.40
363 364 2.433436 GGGTGTCCTGAACGCTTTATT 58.567 47.619 0.00 0.00 38.49 1.40
364 365 2.817844 GGGTGTCCTGAACGCTTTATTT 59.182 45.455 0.00 0.00 38.49 1.40
365 366 3.365969 GGGTGTCCTGAACGCTTTATTTG 60.366 47.826 0.00 0.00 38.49 2.32
366 367 3.365969 GGTGTCCTGAACGCTTTATTTGG 60.366 47.826 0.00 0.00 38.49 3.28
423 424 7.861630 ACTACACATGTGTAAAGTTTGATGAC 58.138 34.615 32.40 0.00 44.47 3.06
430 431 6.252281 TGTGTAAAGTTTGATGACGAAACAC 58.748 36.000 0.00 2.28 36.03 3.32
431 432 6.128254 TGTGTAAAGTTTGATGACGAAACACA 60.128 34.615 9.87 9.87 37.53 3.72
433 434 8.065407 GTGTAAAGTTTGATGACGAAACACATA 58.935 33.333 0.00 0.00 36.03 2.29
434 435 8.613482 TGTAAAGTTTGATGACGAAACACATAA 58.387 29.630 0.00 0.00 36.03 1.90
436 437 8.918961 AAAGTTTGATGACGAAACACATAAAA 57.081 26.923 0.00 0.00 36.03 1.52
437 438 9.528018 AAAGTTTGATGACGAAACACATAAAAT 57.472 25.926 0.00 0.00 36.03 1.82
442 443 7.192913 TGATGACGAAACACATAAAATATGGC 58.807 34.615 0.00 0.00 0.00 4.40
447 465 8.406172 ACGAAACACATAAAATATGGCAATTC 57.594 30.769 0.00 1.72 0.00 2.17
485 503 4.339872 AAACCATGCACACATTGTTCAT 57.660 36.364 0.00 0.00 40.29 2.57
487 505 2.231964 ACCATGCACACATTGTTCATCC 59.768 45.455 0.00 0.00 32.09 3.51
489 507 1.255882 TGCACACATTGTTCATCCCC 58.744 50.000 0.00 0.00 0.00 4.81
490 508 0.532115 GCACACATTGTTCATCCCCC 59.468 55.000 0.00 0.00 0.00 5.40
530 548 5.237127 TCTTGTCTTCTTTGTGTAGCACATG 59.763 40.000 2.65 0.00 44.16 3.21
555 573 9.872757 TGTTAATTTACTTCGTCATCAAACTTC 57.127 29.630 0.00 0.00 0.00 3.01
556 574 9.872757 GTTAATTTACTTCGTCATCAAACTTCA 57.127 29.630 0.00 0.00 0.00 3.02
558 576 6.912203 TTTACTTCGTCATCAAACTTCACA 57.088 33.333 0.00 0.00 0.00 3.58
559 577 6.525121 TTACTTCGTCATCAAACTTCACAG 57.475 37.500 0.00 0.00 0.00 3.66
565 583 4.690748 CGTCATCAAACTTCACAGGTGTAT 59.309 41.667 0.00 0.00 0.00 2.29
569 587 6.873605 TCATCAAACTTCACAGGTGTATAGTG 59.126 38.462 0.00 0.00 34.67 2.74
573 591 7.817478 TCAAACTTCACAGGTGTATAGTGTATG 59.183 37.037 0.00 4.04 34.94 2.39
584 602 7.668886 AGGTGTATAGTGTATGTCCATACTACC 59.331 40.741 16.15 12.32 43.04 3.18
585 603 7.449395 GGTGTATAGTGTATGTCCATACTACCA 59.551 40.741 16.15 5.32 43.04 3.25
657 675 7.862372 TCAAACTATTTGAAATGAAGTGCTGAC 59.138 33.333 0.00 0.00 45.94 3.51
658 676 6.259550 ACTATTTGAAATGAAGTGCTGACC 57.740 37.500 0.00 0.00 0.00 4.02
661 679 0.169009 GAAATGAAGTGCTGACCCGC 59.831 55.000 0.00 0.00 0.00 6.13
690 708 3.670377 GGAGCAACGTTGTGGCCC 61.670 66.667 27.78 18.92 31.88 5.80
703 721 1.935400 TGGCCCTCCCATGTTCCAT 60.935 57.895 0.00 0.00 39.18 3.41
712 730 1.475034 CCCATGTTCCATACCGTCCTG 60.475 57.143 0.00 0.00 0.00 3.86
718 736 1.033746 TCCATACCGTCCTGACCGAC 61.034 60.000 0.00 0.00 0.00 4.79
720 738 0.100682 CATACCGTCCTGACCGACAG 59.899 60.000 3.25 3.25 45.36 3.51
729 747 2.986311 TGACCGACAGACACTTTGC 58.014 52.632 0.00 0.00 0.00 3.68
730 748 0.176910 TGACCGACAGACACTTTGCA 59.823 50.000 0.00 0.00 0.00 4.08
887 1351 2.350057 TTTCAATCCAACGTCCCACA 57.650 45.000 0.00 0.00 0.00 4.17
968 1455 0.922626 GCTTCCCTCCCAAATCCTCT 59.077 55.000 0.00 0.00 0.00 3.69
1000 1498 2.625460 CCTCAGCCCCCAATCCCAA 61.625 63.158 0.00 0.00 0.00 4.12
1037 1553 3.308046 GCACTTCCTCTTCTTCCCAATCT 60.308 47.826 0.00 0.00 0.00 2.40
1039 1555 3.196685 ACTTCCTCTTCTTCCCAATCTCG 59.803 47.826 0.00 0.00 0.00 4.04
1044 1560 1.734465 CTTCTTCCCAATCTCGCACAC 59.266 52.381 0.00 0.00 0.00 3.82
1290 1807 2.646719 GACGCCGTCACCTACACA 59.353 61.111 13.23 0.00 32.09 3.72
1417 1942 2.202837 GGCGGTAGCGGTAGTTGG 60.203 66.667 17.08 0.00 46.35 3.77
1419 1944 2.713967 GCGGTAGCGGTAGTTGGGA 61.714 63.158 17.08 0.00 0.00 4.37
1470 1995 1.341285 TGCTGTGGGAGATGGGATTTG 60.341 52.381 0.00 0.00 0.00 2.32
1475 2000 1.494721 TGGGAGATGGGATTTGCTACC 59.505 52.381 0.00 0.00 31.74 3.18
1567 2093 7.509546 TGAAACTAGTTCTGTTCTGAATCCTT 58.490 34.615 8.95 0.00 37.13 3.36
1594 2263 1.946081 TGCTTCGCTGTGTTGAATTCA 59.054 42.857 3.38 3.38 0.00 2.57
1602 2271 3.245990 GCTGTGTTGAATTCAGTTTTGGC 59.754 43.478 8.41 6.88 0.00 4.52
1610 2279 7.491048 TGTTGAATTCAGTTTTGGCTTTCTAAC 59.509 33.333 8.41 0.00 0.00 2.34
1611 2280 7.346751 TGAATTCAGTTTTGGCTTTCTAACT 57.653 32.000 3.38 0.00 0.00 2.24
1619 2288 5.923733 TTTGGCTTTCTAACTTTGGTTGA 57.076 34.783 0.00 0.00 36.92 3.18
1621 2290 5.705609 TGGCTTTCTAACTTTGGTTGATC 57.294 39.130 0.00 0.00 36.92 2.92
1624 2293 5.241728 GGCTTTCTAACTTTGGTTGATCTGT 59.758 40.000 0.00 0.00 36.92 3.41
1625 2294 6.239036 GGCTTTCTAACTTTGGTTGATCTGTT 60.239 38.462 0.00 0.00 36.92 3.16
1626 2295 6.858478 GCTTTCTAACTTTGGTTGATCTGTTC 59.142 38.462 0.00 0.00 36.92 3.18
1640 2309 9.400638 GGTTGATCTGTTCTATTATACTTCTCG 57.599 37.037 0.00 0.00 0.00 4.04
1683 2352 7.275888 TGAAGTGCAATTGATTTGACTTAGT 57.724 32.000 10.34 0.00 36.59 2.24
1689 2358 8.268738 GTGCAATTGATTTGACTTAGTTGAAAC 58.731 33.333 10.34 0.00 37.53 2.78
1724 2393 3.120338 ACGATTTACCACTCGTTGCAATG 60.120 43.478 12.66 12.66 45.15 2.82
1741 2410 4.945543 TGCAATGTGTAGAAGAGATGCATT 59.054 37.500 0.00 0.00 37.61 3.56
1781 2450 1.974957 TCACTGGGGAACGAATCTTGA 59.025 47.619 0.00 0.00 0.00 3.02
1783 2452 3.772572 TCACTGGGGAACGAATCTTGATA 59.227 43.478 0.00 0.00 0.00 2.15
1785 2454 5.600898 TCACTGGGGAACGAATCTTGATATA 59.399 40.000 0.00 0.00 0.00 0.86
1816 2485 3.067883 GTGCAGATCTACAGATGCAGAGA 59.932 47.826 7.57 0.00 35.17 3.10
1820 2489 5.739647 GCAGATCTACAGATGCAGAGATGTT 60.740 44.000 0.00 0.00 34.37 2.71
1829 2498 5.587443 CAGATGCAGAGATGTTATTGTTGGA 59.413 40.000 0.00 0.00 0.00 3.53
1830 2499 5.821470 AGATGCAGAGATGTTATTGTTGGAG 59.179 40.000 0.00 0.00 0.00 3.86
1831 2500 4.910195 TGCAGAGATGTTATTGTTGGAGT 58.090 39.130 0.00 0.00 0.00 3.85
1832 2501 4.696877 TGCAGAGATGTTATTGTTGGAGTG 59.303 41.667 0.00 0.00 0.00 3.51
1834 2503 5.248640 CAGAGATGTTATTGTTGGAGTGGT 58.751 41.667 0.00 0.00 0.00 4.16
1835 2504 6.406370 CAGAGATGTTATTGTTGGAGTGGTA 58.594 40.000 0.00 0.00 0.00 3.25
1836 2505 7.050377 CAGAGATGTTATTGTTGGAGTGGTAT 58.950 38.462 0.00 0.00 0.00 2.73
1837 2506 7.011763 CAGAGATGTTATTGTTGGAGTGGTATG 59.988 40.741 0.00 0.00 0.00 2.39
1838 2507 6.957631 AGATGTTATTGTTGGAGTGGTATGA 58.042 36.000 0.00 0.00 0.00 2.15
1839 2508 7.402054 AGATGTTATTGTTGGAGTGGTATGAA 58.598 34.615 0.00 0.00 0.00 2.57
1848 2517 6.170506 GTTGGAGTGGTATGAAGTATGAACA 58.829 40.000 0.00 0.00 0.00 3.18
1874 2654 6.851609 TCCATAAAAATGTGAATCAAGACGG 58.148 36.000 0.00 0.00 0.00 4.79
1875 2655 5.516339 CCATAAAAATGTGAATCAAGACGGC 59.484 40.000 0.00 0.00 0.00 5.68
1900 2680 7.528543 GCAGATACCTATTCCTGAAATCCTGAT 60.529 40.741 0.00 0.00 0.00 2.90
1906 2686 7.348274 ACCTATTCCTGAAATCCTGATCAAGTA 59.652 37.037 0.00 0.00 0.00 2.24
1907 2687 7.877097 CCTATTCCTGAAATCCTGATCAAGTAG 59.123 40.741 0.00 0.00 0.00 2.57
1908 2688 5.028549 TCCTGAAATCCTGATCAAGTAGC 57.971 43.478 0.00 0.00 0.00 3.58
1910 2690 4.815308 CCTGAAATCCTGATCAAGTAGCTG 59.185 45.833 0.00 0.00 0.00 4.24
1911 2691 4.194640 TGAAATCCTGATCAAGTAGCTGC 58.805 43.478 0.00 0.00 0.00 5.25
2000 2784 4.192317 AGTTGGTATAGCTTTACTGCTGC 58.808 43.478 13.13 0.00 43.87 5.25
2005 2789 4.636206 GGTATAGCTTTACTGCTGCAACTT 59.364 41.667 13.13 0.00 43.87 2.66
2076 2860 1.098050 GGTAGCTGAACTGCAATGGG 58.902 55.000 0.00 0.00 34.99 4.00
2080 2864 1.926511 GCTGAACTGCAATGGGTCCG 61.927 60.000 0.00 0.00 0.00 4.79
2124 2908 6.415798 TGCTGAAATGCAATTGAATGAATG 57.584 33.333 10.34 0.00 40.29 2.67
2194 3004 4.463050 TTTGGTTTTACTGGGGAGTGAT 57.537 40.909 0.00 0.00 0.00 3.06
2349 3291 1.002366 CGAGCATGTGGAGCAACTAC 58.998 55.000 0.00 0.00 0.00 2.73
2390 3332 0.896940 ATCAAGCACTGGGGCAACTG 60.897 55.000 0.00 0.00 35.83 3.16
2396 3338 0.886490 CACTGGGGCAACTGTCAGAC 60.886 60.000 6.91 0.00 34.74 3.51
2403 3345 1.541588 GGCAACTGTCAGACCATTTCC 59.458 52.381 6.91 0.00 0.00 3.13
2428 3370 3.378512 TGATACATCAAGCCTCTGGAGT 58.621 45.455 0.00 0.00 33.08 3.85
2429 3371 3.386078 TGATACATCAAGCCTCTGGAGTC 59.614 47.826 0.00 0.00 33.08 3.36
2430 3372 1.949799 ACATCAAGCCTCTGGAGTCT 58.050 50.000 0.00 0.00 0.00 3.24
2431 3373 1.554160 ACATCAAGCCTCTGGAGTCTG 59.446 52.381 0.00 0.00 0.00 3.51
2432 3374 1.134461 CATCAAGCCTCTGGAGTCTGG 60.134 57.143 0.00 0.00 0.00 3.86
2433 3375 0.115152 TCAAGCCTCTGGAGTCTGGA 59.885 55.000 0.00 0.00 0.00 3.86
2434 3376 0.536260 CAAGCCTCTGGAGTCTGGAG 59.464 60.000 6.11 6.11 0.00 3.86
2525 3477 4.701765 AGGCTCTGCACTAAACTGATATG 58.298 43.478 0.00 0.00 0.00 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 4.087892 CACCTGGAGGAGCACCGG 62.088 72.222 0.00 0.00 41.83 5.28
13 14 4.135153 CGACGGCACCTGGAGGAG 62.135 72.222 0.00 0.00 38.94 3.69
19 20 4.530857 GATCCCCGACGGCACCTG 62.531 72.222 8.86 0.00 0.00 4.00
22 23 4.446413 AACGATCCCCGACGGCAC 62.446 66.667 8.86 0.00 41.76 5.01
23 24 4.444838 CAACGATCCCCGACGGCA 62.445 66.667 8.86 0.00 41.76 5.69
25 26 4.143333 AGCAACGATCCCCGACGG 62.143 66.667 6.99 6.99 41.76 4.79
26 27 2.582498 GAGCAACGATCCCCGACG 60.582 66.667 0.00 0.00 41.76 5.12
27 28 2.202892 GGAGCAACGATCCCCGAC 60.203 66.667 0.00 0.00 41.76 4.79
28 29 2.063979 ATGGAGCAACGATCCCCGA 61.064 57.895 0.00 0.00 37.30 5.14
29 30 1.889105 CATGGAGCAACGATCCCCG 60.889 63.158 0.00 0.00 37.30 5.73
30 31 2.189499 GCATGGAGCAACGATCCCC 61.189 63.158 0.00 0.00 44.79 4.81
31 32 3.425422 GCATGGAGCAACGATCCC 58.575 61.111 0.00 0.00 44.79 3.85
40 41 0.105593 TCGAAGGATCTGCATGGAGC 59.894 55.000 9.76 0.00 45.96 4.70
41 42 1.685517 TCTCGAAGGATCTGCATGGAG 59.314 52.381 8.12 8.12 0.00 3.86
42 43 1.410517 GTCTCGAAGGATCTGCATGGA 59.589 52.381 0.00 0.00 0.00 3.41
43 44 1.863267 GTCTCGAAGGATCTGCATGG 58.137 55.000 0.00 0.00 0.00 3.66
44 45 1.485397 CGTCTCGAAGGATCTGCATG 58.515 55.000 0.00 0.00 0.00 4.06
45 46 0.387202 CCGTCTCGAAGGATCTGCAT 59.613 55.000 0.00 0.00 31.21 3.96
46 47 1.667154 CCCGTCTCGAAGGATCTGCA 61.667 60.000 0.23 0.00 31.21 4.41
47 48 1.066587 CCCGTCTCGAAGGATCTGC 59.933 63.158 0.23 0.00 31.21 4.26
48 49 1.038130 ACCCCGTCTCGAAGGATCTG 61.038 60.000 0.23 0.00 31.21 2.90
49 50 0.752376 GACCCCGTCTCGAAGGATCT 60.752 60.000 0.23 0.00 31.21 2.75
50 51 1.734748 GACCCCGTCTCGAAGGATC 59.265 63.158 0.23 0.00 31.21 3.36
51 52 1.757340 GGACCCCGTCTCGAAGGAT 60.757 63.158 0.23 0.00 32.47 3.24
52 53 2.362120 GGACCCCGTCTCGAAGGA 60.362 66.667 0.23 0.00 32.47 3.36
53 54 2.362632 AGGACCCCGTCTCGAAGG 60.363 66.667 0.00 0.00 32.47 3.46
54 55 2.416432 GGAGGACCCCGTCTCGAAG 61.416 68.421 0.00 0.00 32.47 3.79
55 56 2.362120 GGAGGACCCCGTCTCGAA 60.362 66.667 0.00 0.00 32.47 3.71
56 57 3.336568 AGGAGGACCCCGTCTCGA 61.337 66.667 0.00 0.00 36.73 4.04
57 58 2.829458 GAGGAGGACCCCGTCTCG 60.829 72.222 0.00 0.00 36.73 4.04
58 59 2.442458 GGAGGAGGACCCCGTCTC 60.442 72.222 0.00 0.00 36.73 3.36
59 60 4.444081 CGGAGGAGGACCCCGTCT 62.444 72.222 0.00 0.00 41.58 4.18
72 73 0.832559 GGGGAAGGGAGATACCGGAG 60.833 65.000 9.46 0.00 40.11 4.63
73 74 1.235112 GGGGAAGGGAGATACCGGA 59.765 63.158 9.46 0.00 40.11 5.14
74 75 1.842010 GGGGGAAGGGAGATACCGG 60.842 68.421 0.00 0.00 40.11 5.28
75 76 0.832559 GAGGGGGAAGGGAGATACCG 60.833 65.000 0.00 0.00 40.11 4.02
76 77 0.568697 AGAGGGGGAAGGGAGATACC 59.431 60.000 0.00 0.00 38.08 2.73
77 78 1.505977 AGAGAGGGGGAAGGGAGATAC 59.494 57.143 0.00 0.00 0.00 2.24
78 79 1.942882 AGAGAGGGGGAAGGGAGATA 58.057 55.000 0.00 0.00 0.00 1.98
79 80 1.942882 TAGAGAGGGGGAAGGGAGAT 58.057 55.000 0.00 0.00 0.00 2.75
80 81 1.790157 GATAGAGAGGGGGAAGGGAGA 59.210 57.143 0.00 0.00 0.00 3.71
81 82 1.792651 AGATAGAGAGGGGGAAGGGAG 59.207 57.143 0.00 0.00 0.00 4.30
82 83 1.942882 AGATAGAGAGGGGGAAGGGA 58.057 55.000 0.00 0.00 0.00 4.20
83 84 2.805290 AAGATAGAGAGGGGGAAGGG 57.195 55.000 0.00 0.00 0.00 3.95
84 85 4.040755 TGAAAAGATAGAGAGGGGGAAGG 58.959 47.826 0.00 0.00 0.00 3.46
85 86 4.719273 AGTGAAAAGATAGAGAGGGGGAAG 59.281 45.833 0.00 0.00 0.00 3.46
86 87 4.699994 AGTGAAAAGATAGAGAGGGGGAA 58.300 43.478 0.00 0.00 0.00 3.97
87 88 4.290942 GAGTGAAAAGATAGAGAGGGGGA 58.709 47.826 0.00 0.00 0.00 4.81
88 89 3.389656 GGAGTGAAAAGATAGAGAGGGGG 59.610 52.174 0.00 0.00 0.00 5.40
89 90 4.033709 TGGAGTGAAAAGATAGAGAGGGG 58.966 47.826 0.00 0.00 0.00 4.79
90 91 5.454471 CCATGGAGTGAAAAGATAGAGAGGG 60.454 48.000 5.56 0.00 0.00 4.30
91 92 5.365025 TCCATGGAGTGAAAAGATAGAGAGG 59.635 44.000 11.44 0.00 0.00 3.69
92 93 6.477053 TCCATGGAGTGAAAAGATAGAGAG 57.523 41.667 11.44 0.00 0.00 3.20
93 94 7.565029 TGTATCCATGGAGTGAAAAGATAGAGA 59.435 37.037 21.33 0.00 0.00 3.10
94 95 7.655328 GTGTATCCATGGAGTGAAAAGATAGAG 59.345 40.741 21.33 0.00 0.00 2.43
95 96 7.345653 AGTGTATCCATGGAGTGAAAAGATAGA 59.654 37.037 21.33 0.00 0.00 1.98
96 97 7.504403 AGTGTATCCATGGAGTGAAAAGATAG 58.496 38.462 21.33 0.00 0.00 2.08
97 98 7.437713 AGTGTATCCATGGAGTGAAAAGATA 57.562 36.000 21.33 0.95 0.00 1.98
98 99 6.319048 AGTGTATCCATGGAGTGAAAAGAT 57.681 37.500 21.33 2.02 0.00 2.40
99 100 5.762179 AGTGTATCCATGGAGTGAAAAGA 57.238 39.130 21.33 0.00 0.00 2.52
100 101 6.176183 AGAAGTGTATCCATGGAGTGAAAAG 58.824 40.000 21.33 0.00 0.00 2.27
101 102 6.126863 AGAAGTGTATCCATGGAGTGAAAA 57.873 37.500 21.33 0.00 0.00 2.29
102 103 5.762179 AGAAGTGTATCCATGGAGTGAAA 57.238 39.130 21.33 0.00 0.00 2.69
103 104 5.958380 ACTAGAAGTGTATCCATGGAGTGAA 59.042 40.000 21.33 2.77 0.00 3.18
104 105 5.519808 ACTAGAAGTGTATCCATGGAGTGA 58.480 41.667 21.33 5.09 0.00 3.41
105 106 5.860941 ACTAGAAGTGTATCCATGGAGTG 57.139 43.478 21.33 3.19 0.00 3.51
106 107 6.875972 AAACTAGAAGTGTATCCATGGAGT 57.124 37.500 21.33 10.87 0.00 3.85
107 108 9.319143 CTAAAAACTAGAAGTGTATCCATGGAG 57.681 37.037 21.33 4.67 0.00 3.86
108 109 8.265055 CCTAAAAACTAGAAGTGTATCCATGGA 58.735 37.037 18.88 18.88 0.00 3.41
109 110 7.499232 CCCTAAAAACTAGAAGTGTATCCATGG 59.501 40.741 4.97 4.97 0.00 3.66
110 111 8.047310 ACCCTAAAAACTAGAAGTGTATCCATG 58.953 37.037 0.00 0.00 0.00 3.66
111 112 8.159229 ACCCTAAAAACTAGAAGTGTATCCAT 57.841 34.615 0.00 0.00 0.00 3.41
112 113 7.563724 ACCCTAAAAACTAGAAGTGTATCCA 57.436 36.000 0.00 0.00 0.00 3.41
113 114 7.551974 GGAACCCTAAAAACTAGAAGTGTATCC 59.448 40.741 0.00 0.00 0.00 2.59
114 115 8.319881 AGGAACCCTAAAAACTAGAAGTGTATC 58.680 37.037 0.00 0.00 28.47 2.24
115 116 8.215954 AGGAACCCTAAAAACTAGAAGTGTAT 57.784 34.615 0.00 0.00 28.47 2.29
116 117 7.511714 AGAGGAACCCTAAAAACTAGAAGTGTA 59.488 37.037 0.00 0.00 31.76 2.90
117 118 6.329460 AGAGGAACCCTAAAAACTAGAAGTGT 59.671 38.462 0.00 0.00 31.76 3.55
118 119 6.770542 AGAGGAACCCTAAAAACTAGAAGTG 58.229 40.000 0.00 0.00 31.76 3.16
119 120 7.390013 AAGAGGAACCCTAAAAACTAGAAGT 57.610 36.000 0.00 0.00 31.76 3.01
120 121 7.937394 TCAAAGAGGAACCCTAAAAACTAGAAG 59.063 37.037 0.00 0.00 31.76 2.85
121 122 7.808218 TCAAAGAGGAACCCTAAAAACTAGAA 58.192 34.615 0.00 0.00 31.76 2.10
122 123 7.383156 TCAAAGAGGAACCCTAAAAACTAGA 57.617 36.000 0.00 0.00 31.76 2.43
123 124 8.103935 AGATCAAAGAGGAACCCTAAAAACTAG 58.896 37.037 0.00 0.00 31.76 2.57
124 125 7.985589 AGATCAAAGAGGAACCCTAAAAACTA 58.014 34.615 0.00 0.00 31.76 2.24
125 126 6.853490 AGATCAAAGAGGAACCCTAAAAACT 58.147 36.000 0.00 0.00 31.76 2.66
126 127 6.943146 AGAGATCAAAGAGGAACCCTAAAAAC 59.057 38.462 0.00 0.00 31.76 2.43
127 128 7.091533 AGAGATCAAAGAGGAACCCTAAAAA 57.908 36.000 0.00 0.00 31.76 1.94
128 129 6.704056 AGAGATCAAAGAGGAACCCTAAAA 57.296 37.500 0.00 0.00 31.76 1.52
129 130 6.960542 ACTAGAGATCAAAGAGGAACCCTAAA 59.039 38.462 0.00 0.00 31.76 1.85
130 131 6.503944 ACTAGAGATCAAAGAGGAACCCTAA 58.496 40.000 0.00 0.00 31.76 2.69
131 132 6.068735 AGACTAGAGATCAAAGAGGAACCCTA 60.069 42.308 0.00 0.00 31.76 3.53
132 133 4.954089 ACTAGAGATCAAAGAGGAACCCT 58.046 43.478 0.00 0.00 36.03 4.34
133 134 4.959839 AGACTAGAGATCAAAGAGGAACCC 59.040 45.833 0.00 0.00 0.00 4.11
134 135 6.264518 CCTAGACTAGAGATCAAAGAGGAACC 59.735 46.154 11.27 0.00 0.00 3.62
135 136 6.264518 CCCTAGACTAGAGATCAAAGAGGAAC 59.735 46.154 11.27 0.00 0.00 3.62
136 137 6.160636 TCCCTAGACTAGAGATCAAAGAGGAA 59.839 42.308 11.27 0.00 0.00 3.36
137 138 5.672653 TCCCTAGACTAGAGATCAAAGAGGA 59.327 44.000 11.27 2.32 0.00 3.71
138 139 5.947663 TCCCTAGACTAGAGATCAAAGAGG 58.052 45.833 11.27 0.00 0.00 3.69
139 140 6.003950 CCTCCCTAGACTAGAGATCAAAGAG 58.996 48.000 11.27 4.18 0.00 2.85
140 141 5.433712 ACCTCCCTAGACTAGAGATCAAAGA 59.566 44.000 11.27 0.00 0.00 2.52
141 142 5.701224 ACCTCCCTAGACTAGAGATCAAAG 58.299 45.833 11.27 0.00 0.00 2.77
142 143 5.735733 ACCTCCCTAGACTAGAGATCAAA 57.264 43.478 11.27 0.00 0.00 2.69
143 144 5.912354 ACTACCTCCCTAGACTAGAGATCAA 59.088 44.000 11.27 0.00 0.00 2.57
144 145 5.308497 CACTACCTCCCTAGACTAGAGATCA 59.692 48.000 11.27 0.00 0.00 2.92
145 146 5.801380 CACTACCTCCCTAGACTAGAGATC 58.199 50.000 11.27 0.00 0.00 2.75
146 147 4.042435 GCACTACCTCCCTAGACTAGAGAT 59.958 50.000 11.27 0.00 0.00 2.75
147 148 3.391955 GCACTACCTCCCTAGACTAGAGA 59.608 52.174 11.27 2.10 0.00 3.10
148 149 3.393278 AGCACTACCTCCCTAGACTAGAG 59.607 52.174 11.27 0.00 0.00 2.43
149 150 3.136809 CAGCACTACCTCCCTAGACTAGA 59.863 52.174 11.27 0.00 0.00 2.43
150 151 3.482436 CAGCACTACCTCCCTAGACTAG 58.518 54.545 2.18 2.18 0.00 2.57
151 152 2.423088 GCAGCACTACCTCCCTAGACTA 60.423 54.545 0.00 0.00 0.00 2.59
152 153 1.686741 GCAGCACTACCTCCCTAGACT 60.687 57.143 0.00 0.00 0.00 3.24
153 154 0.747852 GCAGCACTACCTCCCTAGAC 59.252 60.000 0.00 0.00 0.00 2.59
154 155 0.335019 TGCAGCACTACCTCCCTAGA 59.665 55.000 0.00 0.00 0.00 2.43
155 156 1.418334 ATGCAGCACTACCTCCCTAG 58.582 55.000 0.00 0.00 0.00 3.02
156 157 2.091278 ACTATGCAGCACTACCTCCCTA 60.091 50.000 0.00 0.00 0.00 3.53
157 158 1.343478 ACTATGCAGCACTACCTCCCT 60.343 52.381 0.00 0.00 0.00 4.20
158 159 1.123928 ACTATGCAGCACTACCTCCC 58.876 55.000 0.00 0.00 0.00 4.30
159 160 3.004944 GTCTACTATGCAGCACTACCTCC 59.995 52.174 0.00 0.00 0.00 4.30
160 161 3.886505 AGTCTACTATGCAGCACTACCTC 59.113 47.826 0.00 0.00 0.00 3.85
161 162 3.904717 AGTCTACTATGCAGCACTACCT 58.095 45.455 0.00 0.00 0.00 3.08
162 163 4.657436 AAGTCTACTATGCAGCACTACC 57.343 45.455 0.00 0.00 0.00 3.18
163 164 6.797454 AGTTAAGTCTACTATGCAGCACTAC 58.203 40.000 0.00 0.00 0.00 2.73
164 165 7.228906 CCTAGTTAAGTCTACTATGCAGCACTA 59.771 40.741 0.00 0.00 0.00 2.74
165 166 5.923733 AGTTAAGTCTACTATGCAGCACT 57.076 39.130 0.00 0.00 0.00 4.40
166 167 6.210078 CCTAGTTAAGTCTACTATGCAGCAC 58.790 44.000 0.00 0.00 0.00 4.40
167 168 5.221263 GCCTAGTTAAGTCTACTATGCAGCA 60.221 44.000 0.00 0.00 38.67 4.41
168 169 5.221263 TGCCTAGTTAAGTCTACTATGCAGC 60.221 44.000 8.05 0.00 41.56 5.25
169 170 6.392625 TGCCTAGTTAAGTCTACTATGCAG 57.607 41.667 8.05 0.00 41.56 4.41
170 171 6.785337 TTGCCTAGTTAAGTCTACTATGCA 57.215 37.500 8.05 8.05 43.34 3.96
171 172 8.552034 CAAATTGCCTAGTTAAGTCTACTATGC 58.448 37.037 0.00 0.00 39.03 3.14
172 173 9.817809 TCAAATTGCCTAGTTAAGTCTACTATG 57.182 33.333 0.00 0.00 0.00 2.23
174 175 7.980099 GCTCAAATTGCCTAGTTAAGTCTACTA 59.020 37.037 0.00 0.00 0.00 1.82
175 176 6.819146 GCTCAAATTGCCTAGTTAAGTCTACT 59.181 38.462 0.00 0.00 0.00 2.57
176 177 6.594159 TGCTCAAATTGCCTAGTTAAGTCTAC 59.406 38.462 0.00 0.00 0.00 2.59
177 178 6.594159 GTGCTCAAATTGCCTAGTTAAGTCTA 59.406 38.462 0.00 0.00 0.00 2.59
178 179 5.412904 GTGCTCAAATTGCCTAGTTAAGTCT 59.587 40.000 0.00 0.00 0.00 3.24
179 180 5.631992 GTGCTCAAATTGCCTAGTTAAGTC 58.368 41.667 0.00 0.00 0.00 3.01
180 181 4.154195 CGTGCTCAAATTGCCTAGTTAAGT 59.846 41.667 0.00 0.00 0.00 2.24
181 182 4.391830 TCGTGCTCAAATTGCCTAGTTAAG 59.608 41.667 0.00 0.00 0.00 1.85
182 183 4.320023 TCGTGCTCAAATTGCCTAGTTAA 58.680 39.130 0.00 0.00 0.00 2.01
183 184 3.932822 TCGTGCTCAAATTGCCTAGTTA 58.067 40.909 0.00 0.00 0.00 2.24
184 185 2.778299 TCGTGCTCAAATTGCCTAGTT 58.222 42.857 0.00 0.00 0.00 2.24
185 186 2.472695 TCGTGCTCAAATTGCCTAGT 57.527 45.000 0.00 0.00 0.00 2.57
186 187 2.679837 ACATCGTGCTCAAATTGCCTAG 59.320 45.455 0.00 0.00 0.00 3.02
187 188 2.710377 ACATCGTGCTCAAATTGCCTA 58.290 42.857 0.00 0.00 0.00 3.93
188 189 1.538047 ACATCGTGCTCAAATTGCCT 58.462 45.000 0.00 0.00 0.00 4.75
189 190 2.352503 AACATCGTGCTCAAATTGCC 57.647 45.000 0.00 0.00 0.00 4.52
190 191 4.722194 TCTAAACATCGTGCTCAAATTGC 58.278 39.130 0.00 0.00 0.00 3.56
191 192 4.790140 GCTCTAAACATCGTGCTCAAATTG 59.210 41.667 0.00 0.00 0.00 2.32
192 193 4.142600 GGCTCTAAACATCGTGCTCAAATT 60.143 41.667 0.00 0.00 0.00 1.82
193 194 3.375299 GGCTCTAAACATCGTGCTCAAAT 59.625 43.478 0.00 0.00 0.00 2.32
194 195 2.742053 GGCTCTAAACATCGTGCTCAAA 59.258 45.455 0.00 0.00 0.00 2.69
195 196 2.346803 GGCTCTAAACATCGTGCTCAA 58.653 47.619 0.00 0.00 0.00 3.02
196 197 1.735700 CGGCTCTAAACATCGTGCTCA 60.736 52.381 0.00 0.00 0.00 4.26
197 198 0.924090 CGGCTCTAAACATCGTGCTC 59.076 55.000 0.00 0.00 0.00 4.26
198 199 0.530744 TCGGCTCTAAACATCGTGCT 59.469 50.000 0.00 0.00 0.00 4.40
199 200 0.924090 CTCGGCTCTAAACATCGTGC 59.076 55.000 0.00 0.00 0.00 5.34
200 201 2.186076 GTCTCGGCTCTAAACATCGTG 58.814 52.381 0.00 0.00 0.00 4.35
201 202 1.816835 TGTCTCGGCTCTAAACATCGT 59.183 47.619 0.00 0.00 0.00 3.73
202 203 2.561733 TGTCTCGGCTCTAAACATCG 57.438 50.000 0.00 0.00 0.00 3.84
203 204 3.851098 AGTTGTCTCGGCTCTAAACATC 58.149 45.455 0.00 0.00 0.00 3.06
204 205 3.511934 AGAGTTGTCTCGGCTCTAAACAT 59.488 43.478 0.00 0.00 44.65 2.71
205 206 2.891580 AGAGTTGTCTCGGCTCTAAACA 59.108 45.455 0.00 0.00 44.65 2.83
206 207 3.503891 GAGAGTTGTCTCGGCTCTAAAC 58.496 50.000 0.00 0.00 44.65 2.01
207 208 3.851976 GAGAGTTGTCTCGGCTCTAAA 57.148 47.619 0.00 0.00 44.65 1.85
216 217 0.389166 CTGCCACCGAGAGTTGTCTC 60.389 60.000 0.00 0.00 45.29 3.36
217 218 0.827925 TCTGCCACCGAGAGTTGTCT 60.828 55.000 0.00 0.00 34.86 3.41
218 219 0.389166 CTCTGCCACCGAGAGTTGTC 60.389 60.000 0.00 0.00 33.54 3.18
219 220 1.668294 CTCTGCCACCGAGAGTTGT 59.332 57.895 0.00 0.00 33.54 3.32
220 221 1.739562 GCTCTGCCACCGAGAGTTG 60.740 63.158 0.00 0.00 39.42 3.16
221 222 1.548357 ATGCTCTGCCACCGAGAGTT 61.548 55.000 0.00 0.00 39.42 3.01
222 223 1.548357 AATGCTCTGCCACCGAGAGT 61.548 55.000 0.00 0.00 39.42 3.24
223 224 1.088340 CAATGCTCTGCCACCGAGAG 61.088 60.000 0.00 0.00 40.10 3.20
224 225 1.078918 CAATGCTCTGCCACCGAGA 60.079 57.895 0.00 0.00 0.00 4.04
225 226 2.110967 CCAATGCTCTGCCACCGAG 61.111 63.158 0.00 0.00 0.00 4.63
226 227 2.046023 CCAATGCTCTGCCACCGA 60.046 61.111 0.00 0.00 0.00 4.69
227 228 3.818787 GCCAATGCTCTGCCACCG 61.819 66.667 0.00 0.00 33.53 4.94
238 239 5.232463 AGTTTTGTTGAAGCATAGCCAATG 58.768 37.500 0.00 0.00 38.74 2.82
239 240 5.473066 AGTTTTGTTGAAGCATAGCCAAT 57.527 34.783 0.00 0.00 0.00 3.16
240 241 4.935352 AGTTTTGTTGAAGCATAGCCAA 57.065 36.364 0.00 0.00 0.00 4.52
241 242 4.935352 AAGTTTTGTTGAAGCATAGCCA 57.065 36.364 0.00 0.00 0.00 4.75
242 243 5.629435 GTGTAAGTTTTGTTGAAGCATAGCC 59.371 40.000 0.00 0.00 0.00 3.93
243 244 6.438763 AGTGTAAGTTTTGTTGAAGCATAGC 58.561 36.000 0.00 0.00 0.00 2.97
244 245 9.382244 GTAAGTGTAAGTTTTGTTGAAGCATAG 57.618 33.333 0.00 0.00 0.00 2.23
245 246 9.116067 AGTAAGTGTAAGTTTTGTTGAAGCATA 57.884 29.630 0.00 0.00 0.00 3.14
246 247 7.996385 AGTAAGTGTAAGTTTTGTTGAAGCAT 58.004 30.769 0.00 0.00 0.00 3.79
247 248 7.385778 AGTAAGTGTAAGTTTTGTTGAAGCA 57.614 32.000 0.00 0.00 0.00 3.91
248 249 8.683550 AAAGTAAGTGTAAGTTTTGTTGAAGC 57.316 30.769 0.00 0.00 0.00 3.86
272 273 5.123027 GTGCATGTTTTGTTTCCCTCAAAAA 59.877 36.000 5.59 0.00 43.27 1.94
273 274 4.633565 GTGCATGTTTTGTTTCCCTCAAAA 59.366 37.500 0.00 0.00 40.77 2.44
274 275 4.081198 AGTGCATGTTTTGTTTCCCTCAAA 60.081 37.500 0.00 0.00 33.76 2.69
275 276 3.450457 AGTGCATGTTTTGTTTCCCTCAA 59.550 39.130 0.00 0.00 0.00 3.02
276 277 3.030291 AGTGCATGTTTTGTTTCCCTCA 58.970 40.909 0.00 0.00 0.00 3.86
277 278 3.552890 GGAGTGCATGTTTTGTTTCCCTC 60.553 47.826 0.00 0.00 0.00 4.30
278 279 2.365293 GGAGTGCATGTTTTGTTTCCCT 59.635 45.455 0.00 0.00 0.00 4.20
279 280 2.102252 TGGAGTGCATGTTTTGTTTCCC 59.898 45.455 0.00 0.00 0.00 3.97
280 281 3.123050 GTGGAGTGCATGTTTTGTTTCC 58.877 45.455 0.00 0.00 0.00 3.13
281 282 3.779759 TGTGGAGTGCATGTTTTGTTTC 58.220 40.909 0.00 0.00 0.00 2.78
282 283 3.883830 TGTGGAGTGCATGTTTTGTTT 57.116 38.095 0.00 0.00 0.00 2.83
283 284 3.056250 TGTTGTGGAGTGCATGTTTTGTT 60.056 39.130 0.00 0.00 0.00 2.83
284 285 2.495270 TGTTGTGGAGTGCATGTTTTGT 59.505 40.909 0.00 0.00 0.00 2.83
285 286 3.117794 CTGTTGTGGAGTGCATGTTTTG 58.882 45.455 0.00 0.00 0.00 2.44
286 287 3.023119 TCTGTTGTGGAGTGCATGTTTT 58.977 40.909 0.00 0.00 0.00 2.43
287 288 2.620115 CTCTGTTGTGGAGTGCATGTTT 59.380 45.455 0.00 0.00 0.00 2.83
288 289 2.158769 TCTCTGTTGTGGAGTGCATGTT 60.159 45.455 0.00 0.00 33.06 2.71
289 290 1.417517 TCTCTGTTGTGGAGTGCATGT 59.582 47.619 0.00 0.00 33.06 3.21
290 291 2.174363 TCTCTGTTGTGGAGTGCATG 57.826 50.000 0.00 0.00 33.06 4.06
291 292 2.551721 CCTTCTCTGTTGTGGAGTGCAT 60.552 50.000 0.00 0.00 33.06 3.96
292 293 1.202687 CCTTCTCTGTTGTGGAGTGCA 60.203 52.381 0.00 0.00 33.06 4.57
293 294 1.517242 CCTTCTCTGTTGTGGAGTGC 58.483 55.000 0.00 0.00 33.06 4.40
294 295 1.417890 ACCCTTCTCTGTTGTGGAGTG 59.582 52.381 0.00 0.00 33.06 3.51
295 296 1.694696 GACCCTTCTCTGTTGTGGAGT 59.305 52.381 0.00 0.00 33.06 3.85
296 297 1.694150 TGACCCTTCTCTGTTGTGGAG 59.306 52.381 0.00 0.00 0.00 3.86
297 298 1.416401 GTGACCCTTCTCTGTTGTGGA 59.584 52.381 0.00 0.00 0.00 4.02
298 299 1.543429 GGTGACCCTTCTCTGTTGTGG 60.543 57.143 0.00 0.00 0.00 4.17
299 300 1.417890 AGGTGACCCTTCTCTGTTGTG 59.582 52.381 0.00 0.00 38.13 3.33
300 301 1.417890 CAGGTGACCCTTCTCTGTTGT 59.582 52.381 0.00 0.00 39.89 3.32
301 302 1.417890 ACAGGTGACCCTTCTCTGTTG 59.582 52.381 0.00 0.00 39.89 3.33
302 303 1.417890 CACAGGTGACCCTTCTCTGTT 59.582 52.381 0.00 0.00 39.89 3.16
303 304 1.051812 CACAGGTGACCCTTCTCTGT 58.948 55.000 0.00 0.00 39.89 3.41
304 305 1.342074 TCACAGGTGACCCTTCTCTG 58.658 55.000 0.00 0.00 39.89 3.35
305 306 2.103153 TTCACAGGTGACCCTTCTCT 57.897 50.000 0.00 0.00 39.89 3.10
306 307 2.930826 TTTCACAGGTGACCCTTCTC 57.069 50.000 0.00 0.00 39.89 2.87
307 308 2.749800 GCTTTTCACAGGTGACCCTTCT 60.750 50.000 0.00 0.00 39.89 2.85
308 309 1.609072 GCTTTTCACAGGTGACCCTTC 59.391 52.381 0.00 0.00 39.89 3.46
309 310 1.064017 TGCTTTTCACAGGTGACCCTT 60.064 47.619 0.00 0.00 39.89 3.95
310 311 0.550914 TGCTTTTCACAGGTGACCCT 59.449 50.000 0.00 0.00 44.02 4.34
311 312 1.620822 ATGCTTTTCACAGGTGACCC 58.379 50.000 0.00 0.00 39.66 4.46
312 313 3.733443 AAATGCTTTTCACAGGTGACC 57.267 42.857 0.77 0.00 39.66 4.02
313 314 4.270808 CCAAAAATGCTTTTCACAGGTGAC 59.729 41.667 0.77 0.00 39.66 3.67
314 315 4.161189 TCCAAAAATGCTTTTCACAGGTGA 59.839 37.500 0.00 0.00 37.91 4.02
315 316 4.270808 GTCCAAAAATGCTTTTCACAGGTG 59.729 41.667 0.00 0.00 32.24 4.00
316 317 4.081198 TGTCCAAAAATGCTTTTCACAGGT 60.081 37.500 0.00 0.00 32.24 4.00
317 318 4.270808 GTGTCCAAAAATGCTTTTCACAGG 59.729 41.667 0.00 0.00 32.24 4.00
318 319 4.869297 TGTGTCCAAAAATGCTTTTCACAG 59.131 37.500 10.57 0.00 34.43 3.66
319 320 4.629200 GTGTGTCCAAAAATGCTTTTCACA 59.371 37.500 10.57 10.57 35.80 3.58
320 321 4.259770 CGTGTGTCCAAAAATGCTTTTCAC 60.260 41.667 0.00 3.09 32.24 3.18
321 322 3.862267 CGTGTGTCCAAAAATGCTTTTCA 59.138 39.130 0.00 0.00 32.24 2.69
322 323 3.245048 CCGTGTGTCCAAAAATGCTTTTC 59.755 43.478 0.00 0.00 32.24 2.29
323 324 3.194062 CCGTGTGTCCAAAAATGCTTTT 58.806 40.909 0.00 0.00 35.02 2.27
324 325 2.482839 CCCGTGTGTCCAAAAATGCTTT 60.483 45.455 0.00 0.00 0.00 3.51
325 326 1.068434 CCCGTGTGTCCAAAAATGCTT 59.932 47.619 0.00 0.00 0.00 3.91
326 327 0.673437 CCCGTGTGTCCAAAAATGCT 59.327 50.000 0.00 0.00 0.00 3.79
327 328 0.387565 ACCCGTGTGTCCAAAAATGC 59.612 50.000 0.00 0.00 0.00 3.56
328 329 2.132740 CACCCGTGTGTCCAAAAATG 57.867 50.000 0.00 0.00 37.72 2.32
338 339 1.954146 CGTTCAGGACACCCGTGTG 60.954 63.158 4.96 0.00 45.05 3.82
340 341 2.989055 AAGCGTTCAGGACACCCGTG 62.989 60.000 0.00 0.00 37.58 4.94
341 342 2.319890 AAAGCGTTCAGGACACCCGT 62.320 55.000 0.00 0.00 37.58 5.28
342 343 0.320073 TAAAGCGTTCAGGACACCCG 60.320 55.000 0.00 0.00 37.58 5.28
343 344 2.109425 ATAAAGCGTTCAGGACACCC 57.891 50.000 0.00 0.00 0.00 4.61
344 345 3.365969 CCAAATAAAGCGTTCAGGACACC 60.366 47.826 0.00 0.00 0.00 4.16
345 346 3.500680 TCCAAATAAAGCGTTCAGGACAC 59.499 43.478 0.00 0.00 0.00 3.67
346 347 3.745799 TCCAAATAAAGCGTTCAGGACA 58.254 40.909 0.00 0.00 0.00 4.02
347 348 4.759516 TTCCAAATAAAGCGTTCAGGAC 57.240 40.909 0.00 0.00 0.00 3.85
348 349 4.580995 TGTTTCCAAATAAAGCGTTCAGGA 59.419 37.500 0.00 0.00 0.00 3.86
349 350 4.865776 TGTTTCCAAATAAAGCGTTCAGG 58.134 39.130 0.00 0.00 0.00 3.86
350 351 6.292114 GGTTTGTTTCCAAATAAAGCGTTCAG 60.292 38.462 7.44 0.00 42.26 3.02
351 352 5.520649 GGTTTGTTTCCAAATAAAGCGTTCA 59.479 36.000 7.44 0.00 42.26 3.18
352 353 5.050634 GGGTTTGTTTCCAAATAAAGCGTTC 60.051 40.000 13.76 2.03 43.68 3.95
353 354 4.812091 GGGTTTGTTTCCAAATAAAGCGTT 59.188 37.500 13.76 0.00 43.68 4.84
354 355 4.100344 AGGGTTTGTTTCCAAATAAAGCGT 59.900 37.500 13.76 12.30 43.68 5.07
355 356 4.627058 AGGGTTTGTTTCCAAATAAAGCG 58.373 39.130 13.76 0.00 43.68 4.68
356 357 6.422701 GTGTAGGGTTTGTTTCCAAATAAAGC 59.577 38.462 12.47 12.47 42.26 3.51
357 358 7.493367 TGTGTAGGGTTTGTTTCCAAATAAAG 58.507 34.615 0.00 0.00 42.26 1.85
358 359 7.124448 ACTGTGTAGGGTTTGTTTCCAAATAAA 59.876 33.333 0.00 0.00 42.26 1.40
359 360 6.608002 ACTGTGTAGGGTTTGTTTCCAAATAA 59.392 34.615 0.00 0.00 42.26 1.40
360 361 6.130569 ACTGTGTAGGGTTTGTTTCCAAATA 58.869 36.000 0.00 0.00 42.26 1.40
361 362 4.959839 ACTGTGTAGGGTTTGTTTCCAAAT 59.040 37.500 0.00 0.00 42.26 2.32
362 363 4.345854 ACTGTGTAGGGTTTGTTTCCAAA 58.654 39.130 0.00 0.00 38.22 3.28
363 364 3.970842 ACTGTGTAGGGTTTGTTTCCAA 58.029 40.909 0.00 0.00 0.00 3.53
364 365 3.655615 ACTGTGTAGGGTTTGTTTCCA 57.344 42.857 0.00 0.00 0.00 3.53
365 366 7.608761 TCATATTACTGTGTAGGGTTTGTTTCC 59.391 37.037 0.00 0.00 0.00 3.13
366 367 8.556213 TCATATTACTGTGTAGGGTTTGTTTC 57.444 34.615 0.00 0.00 0.00 2.78
400 401 6.702282 TCGTCATCAAACTTTACACATGTGTA 59.298 34.615 30.31 30.31 44.42 2.90
406 407 6.128254 TGTGTTTCGTCATCAAACTTTACACA 60.128 34.615 0.00 0.00 39.58 3.72
423 424 8.633075 AGAATTGCCATATTTTATGTGTTTCG 57.367 30.769 0.00 0.00 0.00 3.46
452 470 6.820656 TGTGTGCATGGTTTAACTTTTCAAAT 59.179 30.769 0.00 0.00 0.00 2.32
458 476 5.669477 ACAATGTGTGCATGGTTTAACTTT 58.331 33.333 0.00 0.00 35.84 2.66
555 573 5.592104 TGGACATACACTATACACCTGTG 57.408 43.478 0.00 0.00 37.67 3.66
556 574 7.067421 AGTATGGACATACACTATACACCTGT 58.933 38.462 20.84 0.00 44.58 4.00
558 576 7.668886 GGTAGTATGGACATACACTATACACCT 59.331 40.741 20.84 3.02 44.58 4.00
559 577 7.449395 TGGTAGTATGGACATACACTATACACC 59.551 40.741 20.84 15.23 44.58 4.16
565 583 8.999905 TTATGTGGTAGTATGGACATACACTA 57.000 34.615 20.84 13.11 44.58 2.74
684 702 2.043953 GGAACATGGGAGGGCCAC 60.044 66.667 6.18 0.00 35.15 5.01
703 721 0.957395 GTCTGTCGGTCAGGACGGTA 60.957 60.000 6.84 0.00 42.63 4.02
712 730 1.003866 GTTGCAAAGTGTCTGTCGGTC 60.004 52.381 0.00 0.00 0.00 4.79
718 736 3.763097 TGAACTGTTGCAAAGTGTCTG 57.237 42.857 0.00 0.00 0.00 3.51
720 738 5.837586 TTTTTGAACTGTTGCAAAGTGTC 57.162 34.783 0.00 8.32 35.64 3.67
968 1455 1.000506 GCTGAGGCGGGTTTATATCGA 59.999 52.381 0.00 0.00 0.00 3.59
1396 1919 4.217159 CTACCGCTACCGCCACCC 62.217 72.222 0.00 0.00 0.00 4.61
1405 1928 0.892755 CACAGTCCCAACTACCGCTA 59.107 55.000 0.00 0.00 33.25 4.26
1412 1937 0.389391 CGACAGACACAGTCCCAACT 59.611 55.000 0.00 0.00 35.60 3.16
1417 1942 0.102481 ACACACGACAGACACAGTCC 59.898 55.000 0.00 0.00 32.18 3.85
1419 1944 0.102481 GGACACACGACAGACACAGT 59.898 55.000 0.00 0.00 0.00 3.55
1594 2263 5.932619 ACCAAAGTTAGAAAGCCAAAACT 57.067 34.783 0.00 0.00 33.72 2.66
1602 2271 8.159344 AGAACAGATCAACCAAAGTTAGAAAG 57.841 34.615 0.00 0.00 33.27 2.62
1632 2301 8.180267 GCTACACACTATCTAAAACGAGAAGTA 58.820 37.037 0.00 0.00 0.00 2.24
1634 2303 7.219154 CAGCTACACACTATCTAAAACGAGAAG 59.781 40.741 0.00 0.00 0.00 2.85
1640 2309 7.412020 GCACTTCAGCTACACACTATCTAAAAC 60.412 40.741 0.00 0.00 0.00 2.43
1649 2318 2.620251 TTGCACTTCAGCTACACACT 57.380 45.000 0.00 0.00 34.99 3.55
1654 2323 5.570589 GTCAAATCAATTGCACTTCAGCTAC 59.429 40.000 0.00 0.00 38.98 3.58
1683 2352 4.602006 TCGTTCATTCAATTGCGTTTCAA 58.398 34.783 0.00 0.00 39.32 2.69
1689 2358 5.003402 GTGGTAAATCGTTCATTCAATTGCG 59.997 40.000 0.00 0.00 0.00 4.85
1724 2393 7.369803 TCAAAAGAATGCATCTCTTCTACAC 57.630 36.000 18.32 0.00 37.42 2.90
1741 2410 6.593382 CAGTGAAACCAAACCAAATCAAAAGA 59.407 34.615 0.00 0.00 37.80 2.52
1816 2485 7.175104 ACTTCATACCACTCCAACAATAACAT 58.825 34.615 0.00 0.00 0.00 2.71
1820 2489 8.084985 TCATACTTCATACCACTCCAACAATA 57.915 34.615 0.00 0.00 0.00 1.90
1829 2498 5.483937 TGGAGTGTTCATACTTCATACCACT 59.516 40.000 0.00 0.00 31.27 4.00
1830 2499 5.730550 TGGAGTGTTCATACTTCATACCAC 58.269 41.667 0.00 0.00 31.27 4.16
1831 2500 6.560003 ATGGAGTGTTCATACTTCATACCA 57.440 37.500 0.00 0.00 43.46 3.25
1832 2501 8.958119 TTTATGGAGTGTTCATACTTCATACC 57.042 34.615 6.44 0.00 44.75 2.73
1836 2505 9.295825 ACATTTTTATGGAGTGTTCATACTTCA 57.704 29.630 0.00 0.00 40.33 3.02
1837 2506 9.559958 CACATTTTTATGGAGTGTTCATACTTC 57.440 33.333 0.00 0.00 0.00 3.01
1838 2507 9.295825 TCACATTTTTATGGAGTGTTCATACTT 57.704 29.630 0.00 0.00 0.00 2.24
1839 2508 8.862325 TCACATTTTTATGGAGTGTTCATACT 57.138 30.769 0.00 0.00 0.00 2.12
1848 2517 7.362056 CCGTCTTGATTCACATTTTTATGGAGT 60.362 37.037 0.00 0.00 0.00 3.85
1874 2654 5.936956 CAGGATTTCAGGAATAGGTATCTGC 59.063 44.000 0.00 0.00 0.00 4.26
1875 2655 7.308450 TCAGGATTTCAGGAATAGGTATCTG 57.692 40.000 0.00 0.00 0.00 2.90
1900 2680 2.995939 CAGATTCAACGCAGCTACTTGA 59.004 45.455 0.00 0.00 0.00 3.02
1906 2686 1.609208 AAACCAGATTCAACGCAGCT 58.391 45.000 0.00 0.00 0.00 4.24
1907 2687 2.053627 CAAAACCAGATTCAACGCAGC 58.946 47.619 0.00 0.00 0.00 5.25
1908 2688 3.624326 TCAAAACCAGATTCAACGCAG 57.376 42.857 0.00 0.00 0.00 5.18
1910 2690 5.905480 AAAATCAAAACCAGATTCAACGC 57.095 34.783 0.00 0.00 34.78 4.84
1972 2756 6.539103 GCAGTAAAGCTATACCAACTAAAGCT 59.461 38.462 0.00 0.00 45.12 3.74
1980 2764 4.214986 TGCAGCAGTAAAGCTATACCAA 57.785 40.909 0.00 0.00 44.54 3.67
1982 2766 4.192317 AGTTGCAGCAGTAAAGCTATACC 58.808 43.478 2.55 0.00 44.54 2.73
1991 2775 6.039270 ACTCAAATGTAAAGTTGCAGCAGTAA 59.961 34.615 2.55 0.00 0.00 2.24
2058 2842 1.740025 GACCCATTGCAGTTCAGCTAC 59.260 52.381 0.00 0.00 34.99 3.58
2076 2860 3.518590 ACTCGAATGTTCAATACCGGAC 58.481 45.455 9.46 0.00 0.00 4.79
2080 2864 4.851558 GCAACAACTCGAATGTTCAATACC 59.148 41.667 12.03 0.00 38.90 2.73
2124 2908 4.130118 ACAGATTGCAACGAGGGATAATC 58.870 43.478 0.00 0.00 0.00 1.75
2131 2915 3.849911 TCTTCTACAGATTGCAACGAGG 58.150 45.455 0.00 0.00 0.00 4.63
2235 3174 2.549778 CCCCGCCAACATTGAAACATTT 60.550 45.455 0.00 0.00 0.00 2.32
2315 3254 3.885724 TGCTCGTTGTATCATTCAGGA 57.114 42.857 0.00 0.00 0.00 3.86
2349 3291 8.680001 TTGATGTATCATTCAGAAACATTCTGG 58.320 33.333 17.42 4.84 45.29 3.86
2390 3332 5.116180 TGTATCATTCGGAAATGGTCTGAC 58.884 41.667 0.00 0.00 41.58 3.51
2396 3338 5.455392 GCTTGATGTATCATTCGGAAATGG 58.545 41.667 0.00 0.00 42.19 3.16
2403 3345 3.744942 CCAGAGGCTTGATGTATCATTCG 59.255 47.826 0.00 0.00 36.56 3.34
2428 3370 5.682234 TCAAATCTGATAGTTGCTCCAGA 57.318 39.130 0.00 0.00 39.60 3.86
2429 3371 6.748333 TTTCAAATCTGATAGTTGCTCCAG 57.252 37.500 0.00 0.00 33.18 3.86
2430 3372 8.049117 ACTATTTCAAATCTGATAGTTGCTCCA 58.951 33.333 0.00 0.00 33.18 3.86
2431 3373 8.443953 ACTATTTCAAATCTGATAGTTGCTCC 57.556 34.615 0.00 0.00 33.18 4.70
2433 3375 9.890629 TGTACTATTTCAAATCTGATAGTTGCT 57.109 29.630 0.00 0.00 32.25 3.91
2463 3406 8.335532 ACATACTACATGCAGTTGTAATTGTT 57.664 30.769 3.37 0.00 40.79 2.83
2525 3477 6.049790 AGGAACGAGCTGATTATTAGGAAAC 58.950 40.000 0.00 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.