Multiple sequence alignment - TraesCS2B01G411400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G411400 chr2B 100.000 3113 0 0 527 3639 584892931 584896043 0.000000e+00 5749.0
1 TraesCS2B01G411400 chr2B 88.793 812 73 4 1086 1882 584873590 584874398 0.000000e+00 979.0
2 TraesCS2B01G411400 chr2B 100.000 236 0 0 1 236 584892405 584892640 1.550000e-118 436.0
3 TraesCS2B01G411400 chr2B 90.000 120 12 0 1913 2032 584882391 584882510 4.870000e-34 156.0
4 TraesCS2B01G411400 chr3D 93.599 1203 72 5 2439 3639 365274793 365275992 0.000000e+00 1790.0
5 TraesCS2B01G411400 chr3D 82.126 856 108 31 1204 2033 540153262 540152426 0.000000e+00 691.0
6 TraesCS2B01G411400 chr3D 92.827 474 31 2 527 997 581970088 581970561 0.000000e+00 684.0
7 TraesCS2B01G411400 chr3D 83.680 625 84 14 1289 1903 540127619 540127003 1.130000e-159 573.0
8 TraesCS2B01G411400 chr3D 88.843 242 15 6 1 236 581969731 581969966 1.650000e-73 287.0
9 TraesCS2B01G411400 chr7B 92.964 1208 78 5 2435 3639 176237138 176238341 0.000000e+00 1753.0
10 TraesCS2B01G411400 chr2A 93.457 1131 50 10 997 2114 643016155 643017274 0.000000e+00 1657.0
11 TraesCS2B01G411400 chr2A 91.045 1206 97 9 2438 3639 550683658 550682460 0.000000e+00 1618.0
12 TraesCS2B01G411400 chr2A 88.131 1011 82 17 1058 2034 643007695 643008701 0.000000e+00 1168.0
13 TraesCS2B01G411400 chr2A 82.083 1200 165 28 2456 3639 73551828 73552993 0.000000e+00 979.0
14 TraesCS2B01G411400 chr2A 86.154 260 18 7 744 1003 756366910 756367151 7.750000e-67 265.0
15 TraesCS2B01G411400 chr2A 89.340 197 9 6 2197 2381 643017292 643017488 1.690000e-58 237.0
16 TraesCS2B01G411400 chr2A 87.065 201 10 8 46 236 756365615 756365809 2.850000e-51 213.0
17 TraesCS2B01G411400 chr1B 92.209 1168 79 3 2474 3639 631215980 631214823 0.000000e+00 1642.0
18 TraesCS2B01G411400 chr1B 92.593 54 4 0 943 996 545275828 545275881 1.080000e-10 78.7
19 TraesCS2B01G411400 chr2D 92.444 1125 37 11 997 2093 498282060 498283164 0.000000e+00 1563.0
20 TraesCS2B01G411400 chr2D 87.773 1006 79 12 1062 2034 498276060 498277054 0.000000e+00 1136.0
21 TraesCS2B01G411400 chr2D 96.330 109 4 0 2197 2305 498283197 498283305 2.890000e-41 180.0
22 TraesCS2B01G411400 chr1D 89.337 1191 85 11 2452 3639 438315872 438317023 0.000000e+00 1458.0
23 TraesCS2B01G411400 chr1D 92.664 777 51 4 2438 3210 60183868 60184642 0.000000e+00 1114.0
24 TraesCS2B01G411400 chr7D 92.597 824 55 4 2436 3258 10092707 10093525 0.000000e+00 1179.0
25 TraesCS2B01G411400 chr7D 85.846 1088 134 17 2439 3516 473407436 473408513 0.000000e+00 1138.0
26 TraesCS2B01G411400 chr4B 90.952 851 56 7 2790 3639 647768502 647767672 0.000000e+00 1125.0
27 TraesCS2B01G411400 chr6B 85.057 957 128 9 2438 3389 9311562 9310616 0.000000e+00 961.0
28 TraesCS2B01G411400 chr3B 80.248 886 111 36 1198 2049 716296338 716295483 3.110000e-170 608.0
29 TraesCS2B01G411400 chr3A 81.339 702 100 18 1204 1882 675154254 675153561 3.200000e-150 542.0
30 TraesCS2B01G411400 chr3A 94.231 52 3 0 943 994 679984376 679984427 3.010000e-11 80.5
31 TraesCS2B01G411400 chr7A 90.354 311 24 2 564 872 59935059 59935365 1.570000e-108 403.0
32 TraesCS2B01G411400 chr7A 90.032 311 24 3 564 872 60059854 60060159 2.630000e-106 396.0
33 TraesCS2B01G411400 chr7A 86.250 240 16 9 1 236 59934777 59935003 1.010000e-60 244.0
34 TraesCS2B01G411400 chr7A 86.250 240 16 9 1 236 60059572 60059798 1.010000e-60 244.0
35 TraesCS2B01G411400 chr7A 93.651 126 8 0 870 995 59935602 59935727 4.800000e-44 189.0
36 TraesCS2B01G411400 chr7A 93.651 126 8 0 870 995 60060396 60060521 4.800000e-44 189.0
37 TraesCS2B01G411400 chrUn 86.752 234 14 9 7 236 353522394 353522174 1.010000e-60 244.0
38 TraesCS2B01G411400 chr5B 92.188 64 5 0 930 993 17462965 17463028 1.390000e-14 91.6
39 TraesCS2B01G411400 chr4D 94.643 56 3 0 943 998 440408280 440408335 1.800000e-13 87.9
40 TraesCS2B01G411400 chr5D 94.444 54 3 0 943 996 2786150 2786097 2.330000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G411400 chr2B 584892405 584896043 3638 False 3092.500000 5749 100.000000 1 3639 2 chr2B.!!$F3 3638
1 TraesCS2B01G411400 chr2B 584873590 584874398 808 False 979.000000 979 88.793000 1086 1882 1 chr2B.!!$F1 796
2 TraesCS2B01G411400 chr3D 365274793 365275992 1199 False 1790.000000 1790 93.599000 2439 3639 1 chr3D.!!$F1 1200
3 TraesCS2B01G411400 chr3D 540152426 540153262 836 True 691.000000 691 82.126000 1204 2033 1 chr3D.!!$R2 829
4 TraesCS2B01G411400 chr3D 540127003 540127619 616 True 573.000000 573 83.680000 1289 1903 1 chr3D.!!$R1 614
5 TraesCS2B01G411400 chr3D 581969731 581970561 830 False 485.500000 684 90.835000 1 997 2 chr3D.!!$F2 996
6 TraesCS2B01G411400 chr7B 176237138 176238341 1203 False 1753.000000 1753 92.964000 2435 3639 1 chr7B.!!$F1 1204
7 TraesCS2B01G411400 chr2A 550682460 550683658 1198 True 1618.000000 1618 91.045000 2438 3639 1 chr2A.!!$R1 1201
8 TraesCS2B01G411400 chr2A 643007695 643008701 1006 False 1168.000000 1168 88.131000 1058 2034 1 chr2A.!!$F2 976
9 TraesCS2B01G411400 chr2A 73551828 73552993 1165 False 979.000000 979 82.083000 2456 3639 1 chr2A.!!$F1 1183
10 TraesCS2B01G411400 chr2A 643016155 643017488 1333 False 947.000000 1657 91.398500 997 2381 2 chr2A.!!$F3 1384
11 TraesCS2B01G411400 chr2A 756365615 756367151 1536 False 239.000000 265 86.609500 46 1003 2 chr2A.!!$F4 957
12 TraesCS2B01G411400 chr1B 631214823 631215980 1157 True 1642.000000 1642 92.209000 2474 3639 1 chr1B.!!$R1 1165
13 TraesCS2B01G411400 chr2D 498276060 498277054 994 False 1136.000000 1136 87.773000 1062 2034 1 chr2D.!!$F1 972
14 TraesCS2B01G411400 chr2D 498282060 498283305 1245 False 871.500000 1563 94.387000 997 2305 2 chr2D.!!$F2 1308
15 TraesCS2B01G411400 chr1D 438315872 438317023 1151 False 1458.000000 1458 89.337000 2452 3639 1 chr1D.!!$F2 1187
16 TraesCS2B01G411400 chr1D 60183868 60184642 774 False 1114.000000 1114 92.664000 2438 3210 1 chr1D.!!$F1 772
17 TraesCS2B01G411400 chr7D 10092707 10093525 818 False 1179.000000 1179 92.597000 2436 3258 1 chr7D.!!$F1 822
18 TraesCS2B01G411400 chr7D 473407436 473408513 1077 False 1138.000000 1138 85.846000 2439 3516 1 chr7D.!!$F2 1077
19 TraesCS2B01G411400 chr4B 647767672 647768502 830 True 1125.000000 1125 90.952000 2790 3639 1 chr4B.!!$R1 849
20 TraesCS2B01G411400 chr6B 9310616 9311562 946 True 961.000000 961 85.057000 2438 3389 1 chr6B.!!$R1 951
21 TraesCS2B01G411400 chr3B 716295483 716296338 855 True 608.000000 608 80.248000 1198 2049 1 chr3B.!!$R1 851
22 TraesCS2B01G411400 chr3A 675153561 675154254 693 True 542.000000 542 81.339000 1204 1882 1 chr3A.!!$R1 678
23 TraesCS2B01G411400 chr7A 59934777 59935727 950 False 278.666667 403 90.085000 1 995 3 chr7A.!!$F1 994
24 TraesCS2B01G411400 chr7A 60059572 60060521 949 False 276.333333 396 89.977667 1 995 3 chr7A.!!$F2 994

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
615 630 0.331278 TGGAGTAGGCAAATGGTGGG 59.669 55.0 0.0 0.0 0.00 4.61 F
2134 3400 0.327924 CCTGGTTGCAGATACACCCA 59.672 55.0 2.1 0.0 30.54 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2395 3673 0.035176 TAACAGTAACACCACCCCGC 59.965 55.000 0.0 0.0 0.0 6.13 R
3370 4680 1.979155 CTGGGCTGTCGTCTCCTCA 60.979 63.158 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.663464 CATGTAATGGAGCAGTCAACG 57.337 47.619 0.00 0.00 41.79 4.10
36 37 1.338674 TGTAATGGAGCAGTCAACGGG 60.339 52.381 0.00 0.00 0.00 5.28
44 45 0.727398 GCAGTCAACGGGTAATGAGC 59.273 55.000 0.00 0.00 0.00 4.26
83 84 8.755696 TGAGCATTTTTCCATTAACATGTAAC 57.244 30.769 0.00 0.00 0.00 2.50
90 96 5.984233 TCCATTAACATGTAACGAGCATC 57.016 39.130 0.00 0.00 0.00 3.91
192 206 9.769093 CAACGGGTAATTTTTCTCTAAAGTATG 57.231 33.333 0.00 0.00 0.00 2.39
193 207 9.511272 AACGGGTAATTTTTCTCTAAAGTATGT 57.489 29.630 0.00 0.00 0.00 2.29
614 629 1.271871 TGTGGAGTAGGCAAATGGTGG 60.272 52.381 0.00 0.00 0.00 4.61
615 630 0.331278 TGGAGTAGGCAAATGGTGGG 59.669 55.000 0.00 0.00 0.00 4.61
619 634 1.992557 AGTAGGCAAATGGTGGGAAGA 59.007 47.619 0.00 0.00 0.00 2.87
624 639 2.354003 GGCAAATGGTGGGAAGATGTTG 60.354 50.000 0.00 0.00 0.00 3.33
684 699 4.106029 TCTGGTCGCATTTAGAGTACAC 57.894 45.455 0.00 0.00 0.00 2.90
708 723 7.114529 CACAGTTGTACTTAAGGACTTCGTTAG 59.885 40.741 18.67 5.29 0.00 2.34
710 725 6.266330 AGTTGTACTTAAGGACTTCGTTAGGT 59.734 38.462 18.67 10.23 39.03 3.08
729 744 5.684550 AGGTTACTCAAAATTTGTCGACC 57.315 39.130 14.12 9.57 0.00 4.79
742 757 1.202486 TGTCGACCCTGTTGAGACAAC 60.202 52.381 14.12 7.55 38.66 3.32
795 1679 1.084289 GGTTAATGCGTGTCAGGGTC 58.916 55.000 0.00 0.00 0.00 4.46
819 1703 4.077184 CCGGCCGGTGAGTAGCAA 62.077 66.667 36.64 0.00 0.00 3.91
847 1733 1.035385 GGTTAAATGAGGGTGGGCCG 61.035 60.000 0.00 0.00 34.97 6.13
896 2021 9.141400 ACGAAACAGAGAAAGAGATAATACAAC 57.859 33.333 0.00 0.00 0.00 3.32
928 2053 3.494332 AGTATACTAGTAGGCGGGTTGG 58.506 50.000 2.75 0.00 0.00 3.77
1006 2131 6.750660 TTCGGTATTTCCCCACAATATAGA 57.249 37.500 0.00 0.00 0.00 1.98
1007 2132 6.354794 TCGGTATTTCCCCACAATATAGAG 57.645 41.667 0.00 0.00 0.00 2.43
1008 2133 4.935808 CGGTATTTCCCCACAATATAGAGC 59.064 45.833 0.00 0.00 0.00 4.09
1013 2138 2.979678 TCCCCACAATATAGAGCCCTTC 59.020 50.000 0.00 0.00 0.00 3.46
1054 2182 4.640771 TTCCACCAATTCTCTTACAGCT 57.359 40.909 0.00 0.00 0.00 4.24
1055 2183 5.755409 TTCCACCAATTCTCTTACAGCTA 57.245 39.130 0.00 0.00 0.00 3.32
1063 2191 6.212955 CAATTCTCTTACAGCTAGCTAGACC 58.787 44.000 25.15 7.60 0.00 3.85
1068 2196 5.017490 TCTTACAGCTAGCTAGACCAGTTT 58.983 41.667 25.15 3.18 0.00 2.66
1451 2622 2.100197 CAGGAAGATCACCGACCTGTA 58.900 52.381 0.00 0.00 41.91 2.74
1573 2756 3.195698 GCGTGACATTCTCCGGCC 61.196 66.667 0.00 0.00 0.00 6.13
1773 2966 4.007644 CGGTGCCTGCAGGACTCA 62.008 66.667 37.21 21.74 37.39 3.41
1869 3077 1.982660 ACCTCCGCTTCGAGATATCA 58.017 50.000 5.32 0.00 30.97 2.15
1870 3078 2.520069 ACCTCCGCTTCGAGATATCAT 58.480 47.619 5.32 0.00 30.97 2.45
1969 3223 1.661112 GTCTCTAACTTGTGATGCGCC 59.339 52.381 4.18 0.00 0.00 6.53
2034 3288 1.709147 GCATTGGCTTCATCGTCGCT 61.709 55.000 0.00 0.00 36.96 4.93
2083 3349 2.307686 AGAAGAAAGGCCGGGAATACAA 59.692 45.455 2.18 0.00 0.00 2.41
2084 3350 2.124277 AGAAAGGCCGGGAATACAAC 57.876 50.000 2.18 0.00 0.00 3.32
2085 3351 1.353022 AGAAAGGCCGGGAATACAACA 59.647 47.619 2.18 0.00 0.00 3.33
2086 3352 1.743394 GAAAGGCCGGGAATACAACAG 59.257 52.381 2.18 0.00 0.00 3.16
2087 3353 0.679960 AAGGCCGGGAATACAACAGC 60.680 55.000 2.18 0.00 0.00 4.40
2088 3354 1.377987 GGCCGGGAATACAACAGCA 60.378 57.895 2.18 0.00 0.00 4.41
2089 3355 0.963355 GGCCGGGAATACAACAGCAA 60.963 55.000 2.18 0.00 0.00 3.91
2095 3361 2.493278 GGGAATACAACAGCAACAGCAT 59.507 45.455 0.00 0.00 0.00 3.79
2107 3373 3.198635 AGCAACAGCATCAGGTATGTACT 59.801 43.478 0.00 0.00 37.93 2.73
2109 3375 4.681781 GCAACAGCATCAGGTATGTACTCT 60.682 45.833 0.00 0.00 37.93 3.24
2114 3380 6.000840 CAGCATCAGGTATGTACTCTCTCTA 58.999 44.000 0.00 0.00 37.93 2.43
2115 3381 6.001460 AGCATCAGGTATGTACTCTCTCTAC 58.999 44.000 0.00 0.00 37.93 2.59
2117 3383 6.539173 CATCAGGTATGTACTCTCTCTACCT 58.461 44.000 0.00 0.00 42.20 3.08
2119 3385 5.313280 AGGTATGTACTCTCTCTACCTGG 57.687 47.826 0.00 0.00 40.44 4.45
2120 3386 4.727841 AGGTATGTACTCTCTCTACCTGGT 59.272 45.833 4.05 4.05 40.44 4.00
2121 3387 5.194132 AGGTATGTACTCTCTCTACCTGGTT 59.806 44.000 3.84 0.00 40.44 3.67
2122 3388 5.299782 GGTATGTACTCTCTCTACCTGGTTG 59.700 48.000 3.84 2.56 31.19 3.77
2123 3389 3.090037 TGTACTCTCTCTACCTGGTTGC 58.910 50.000 3.84 0.00 0.00 4.17
2124 3390 2.310779 ACTCTCTCTACCTGGTTGCA 57.689 50.000 3.84 0.00 0.00 4.08
2125 3391 2.175202 ACTCTCTCTACCTGGTTGCAG 58.825 52.381 3.84 2.78 0.00 4.41
2126 3392 2.225142 ACTCTCTCTACCTGGTTGCAGA 60.225 50.000 3.84 7.08 0.00 4.26
2127 3393 3.030291 CTCTCTCTACCTGGTTGCAGAT 58.970 50.000 3.84 0.00 0.00 2.90
2128 3394 4.211125 CTCTCTCTACCTGGTTGCAGATA 58.789 47.826 3.84 0.00 0.00 1.98
2129 3395 3.954904 TCTCTCTACCTGGTTGCAGATAC 59.045 47.826 3.84 0.00 0.00 2.24
2130 3396 3.701542 CTCTCTACCTGGTTGCAGATACA 59.298 47.826 3.84 0.00 0.00 2.29
2131 3397 3.447586 TCTCTACCTGGTTGCAGATACAC 59.552 47.826 3.84 0.00 0.00 2.90
2132 3398 2.500098 TCTACCTGGTTGCAGATACACC 59.500 50.000 3.84 0.00 0.00 4.16
2133 3399 0.328258 ACCTGGTTGCAGATACACCC 59.672 55.000 2.10 0.00 0.00 4.61
2134 3400 0.327924 CCTGGTTGCAGATACACCCA 59.672 55.000 2.10 0.00 30.54 4.51
2135 3401 1.064463 CCTGGTTGCAGATACACCCAT 60.064 52.381 2.10 0.00 30.98 4.00
2136 3402 2.621407 CCTGGTTGCAGATACACCCATT 60.621 50.000 2.10 0.00 30.98 3.16
2137 3403 3.091545 CTGGTTGCAGATACACCCATTT 58.908 45.455 2.10 0.00 30.98 2.32
2138 3404 2.824936 TGGTTGCAGATACACCCATTTG 59.175 45.455 2.10 0.00 25.28 2.32
2139 3405 3.088532 GGTTGCAGATACACCCATTTGA 58.911 45.455 0.00 0.00 0.00 2.69
2140 3406 3.509575 GGTTGCAGATACACCCATTTGAA 59.490 43.478 0.00 0.00 0.00 2.69
2141 3407 4.485163 GTTGCAGATACACCCATTTGAAC 58.515 43.478 0.00 0.00 0.00 3.18
2142 3408 2.746904 TGCAGATACACCCATTTGAACG 59.253 45.455 0.00 0.00 0.00 3.95
2143 3409 3.006940 GCAGATACACCCATTTGAACGA 58.993 45.455 0.00 0.00 0.00 3.85
2144 3410 3.181510 GCAGATACACCCATTTGAACGAC 60.182 47.826 0.00 0.00 0.00 4.34
2145 3411 4.000325 CAGATACACCCATTTGAACGACA 59.000 43.478 0.00 0.00 0.00 4.35
2146 3412 4.454161 CAGATACACCCATTTGAACGACAA 59.546 41.667 0.00 0.00 36.65 3.18
2164 3430 9.543018 GAACGACAAATAGTTTCAGATAAAAGG 57.457 33.333 0.00 0.00 0.00 3.11
2191 3457 0.394488 TGTTTGGGCCTCGTTGTTGA 60.394 50.000 4.53 0.00 0.00 3.18
2209 3475 6.418057 TGTTGAGAAATTGGCCTAATTGTT 57.582 33.333 3.32 1.17 38.93 2.83
2210 3476 6.222389 TGTTGAGAAATTGGCCTAATTGTTG 58.778 36.000 3.32 0.00 38.93 3.33
2211 3477 6.041409 TGTTGAGAAATTGGCCTAATTGTTGA 59.959 34.615 3.32 0.00 38.93 3.18
2212 3478 6.271488 TGAGAAATTGGCCTAATTGTTGAG 57.729 37.500 3.32 0.00 38.93 3.02
2213 3479 6.009589 TGAGAAATTGGCCTAATTGTTGAGA 58.990 36.000 3.32 0.00 38.93 3.27
2214 3480 6.493115 TGAGAAATTGGCCTAATTGTTGAGAA 59.507 34.615 3.32 0.00 38.93 2.87
2215 3481 7.015098 TGAGAAATTGGCCTAATTGTTGAGAAA 59.985 33.333 3.32 0.00 38.93 2.52
2216 3482 7.910584 AGAAATTGGCCTAATTGTTGAGAAAT 58.089 30.769 3.32 0.00 38.93 2.17
2217 3483 8.377799 AGAAATTGGCCTAATTGTTGAGAAATT 58.622 29.630 3.32 0.00 38.93 1.82
2218 3484 7.910441 AATTGGCCTAATTGTTGAGAAATTG 57.090 32.000 3.32 0.00 37.59 2.32
2219 3485 5.404466 TGGCCTAATTGTTGAGAAATTGG 57.596 39.130 3.32 0.00 0.00 3.16
2220 3486 4.183865 GGCCTAATTGTTGAGAAATTGGC 58.816 43.478 0.00 0.00 38.76 4.52
2221 3487 4.183865 GCCTAATTGTTGAGAAATTGGCC 58.816 43.478 0.00 0.00 36.39 5.36
2222 3488 4.081476 GCCTAATTGTTGAGAAATTGGCCT 60.081 41.667 3.32 0.00 36.39 5.19
2223 3489 5.127031 GCCTAATTGTTGAGAAATTGGCCTA 59.873 40.000 3.32 0.00 36.39 3.93
2224 3490 6.350949 GCCTAATTGTTGAGAAATTGGCCTAA 60.351 38.462 3.32 0.00 36.39 2.69
2225 3491 7.633553 GCCTAATTGTTGAGAAATTGGCCTAAT 60.634 37.037 3.32 0.00 36.39 1.73
2226 3492 8.260114 CCTAATTGTTGAGAAATTGGCCTAATT 58.740 33.333 3.32 5.81 40.67 1.40
2227 3493 7.910441 AATTGTTGAGAAATTGGCCTAATTG 57.090 32.000 3.32 0.00 38.93 2.32
2228 3494 6.418057 TTGTTGAGAAATTGGCCTAATTGT 57.582 33.333 3.32 0.00 38.93 2.71
2311 3577 5.013079 AGCAATGATCTGACCGGGATAATAA 59.987 40.000 6.32 0.00 0.00 1.40
2316 3589 5.246203 TGATCTGACCGGGATAATAAGAAGG 59.754 44.000 6.32 0.00 0.00 3.46
2329 3602 7.093509 GGATAATAAGAAGGAGGCCAAACAAAA 60.094 37.037 5.01 0.00 0.00 2.44
2338 3611 1.414550 GGCCAAACAAAAGCAAGGGTA 59.585 47.619 0.00 0.00 0.00 3.69
2340 3613 2.102420 GCCAAACAAAAGCAAGGGTAGT 59.898 45.455 0.00 0.00 0.00 2.73
2381 3659 4.081087 CACACATAGCTAGTTAGGGTGGTT 60.081 45.833 18.76 3.70 0.00 3.67
2382 3660 5.128171 CACACATAGCTAGTTAGGGTGGTTA 59.872 44.000 18.76 0.00 0.00 2.85
2383 3661 5.722923 ACACATAGCTAGTTAGGGTGGTTAA 59.277 40.000 18.76 0.00 0.00 2.01
2384 3662 6.214005 ACACATAGCTAGTTAGGGTGGTTAAA 59.786 38.462 18.76 0.00 0.00 1.52
2385 3663 7.092578 ACACATAGCTAGTTAGGGTGGTTAAAT 60.093 37.037 18.76 2.17 0.00 1.40
2386 3664 7.773690 CACATAGCTAGTTAGGGTGGTTAAATT 59.226 37.037 0.00 0.00 0.00 1.82
2387 3665 8.333984 ACATAGCTAGTTAGGGTGGTTAAATTT 58.666 33.333 0.00 0.00 0.00 1.82
2388 3666 9.185680 CATAGCTAGTTAGGGTGGTTAAATTTT 57.814 33.333 0.00 0.00 0.00 1.82
2389 3667 9.763837 ATAGCTAGTTAGGGTGGTTAAATTTTT 57.236 29.630 0.00 0.00 0.00 1.94
2407 3685 4.035843 TTTTTGCGGGGTGGTGTT 57.964 50.000 0.00 0.00 0.00 3.32
2408 3686 3.202548 TTTTTGCGGGGTGGTGTTA 57.797 47.368 0.00 0.00 0.00 2.41
2409 3687 0.745468 TTTTTGCGGGGTGGTGTTAC 59.255 50.000 0.00 0.00 0.00 2.50
2410 3688 0.106619 TTTTGCGGGGTGGTGTTACT 60.107 50.000 0.00 0.00 0.00 2.24
2411 3689 0.820074 TTTGCGGGGTGGTGTTACTG 60.820 55.000 0.00 0.00 0.00 2.74
2412 3690 1.985460 TTGCGGGGTGGTGTTACTGT 61.985 55.000 0.00 0.00 0.00 3.55
2413 3691 1.228033 GCGGGGTGGTGTTACTGTT 60.228 57.895 0.00 0.00 0.00 3.16
2414 3692 0.035176 GCGGGGTGGTGTTACTGTTA 59.965 55.000 0.00 0.00 0.00 2.41
2415 3693 1.799544 CGGGGTGGTGTTACTGTTAC 58.200 55.000 0.00 0.00 0.00 2.50
2416 3694 1.799544 GGGGTGGTGTTACTGTTACG 58.200 55.000 0.00 0.00 0.00 3.18
2417 3695 1.070601 GGGGTGGTGTTACTGTTACGT 59.929 52.381 0.00 0.00 0.00 3.57
2418 3696 2.137523 GGGTGGTGTTACTGTTACGTG 58.862 52.381 0.00 0.00 0.00 4.49
2419 3697 2.224018 GGGTGGTGTTACTGTTACGTGA 60.224 50.000 0.00 0.00 0.00 4.35
2420 3698 3.555586 GGGTGGTGTTACTGTTACGTGAT 60.556 47.826 0.00 0.00 0.00 3.06
2421 3699 3.676646 GGTGGTGTTACTGTTACGTGATC 59.323 47.826 0.00 0.00 0.00 2.92
2422 3700 4.553323 GTGGTGTTACTGTTACGTGATCT 58.447 43.478 0.00 0.00 0.00 2.75
2423 3701 4.384846 GTGGTGTTACTGTTACGTGATCTG 59.615 45.833 0.00 0.00 0.00 2.90
2424 3702 4.038282 TGGTGTTACTGTTACGTGATCTGT 59.962 41.667 0.00 1.51 0.00 3.41
2425 3703 4.986659 GGTGTTACTGTTACGTGATCTGTT 59.013 41.667 0.00 0.00 0.00 3.16
2426 3704 5.107607 GGTGTTACTGTTACGTGATCTGTTG 60.108 44.000 0.00 0.00 0.00 3.33
2427 3705 5.461078 GTGTTACTGTTACGTGATCTGTTGT 59.539 40.000 0.00 0.00 0.00 3.32
2428 3706 6.638063 GTGTTACTGTTACGTGATCTGTTGTA 59.362 38.462 0.00 0.00 0.00 2.41
2429 3707 7.327761 GTGTTACTGTTACGTGATCTGTTGTAT 59.672 37.037 0.00 0.00 0.00 2.29
2430 3708 7.327518 TGTTACTGTTACGTGATCTGTTGTATG 59.672 37.037 0.00 0.00 0.00 2.39
2431 3709 4.625742 ACTGTTACGTGATCTGTTGTATGC 59.374 41.667 0.00 0.00 0.00 3.14
2432 3710 4.561105 TGTTACGTGATCTGTTGTATGCA 58.439 39.130 0.00 0.00 0.00 3.96
2433 3711 5.175127 TGTTACGTGATCTGTTGTATGCAT 58.825 37.500 3.79 3.79 0.00 3.96
2476 3755 9.814507 GAGCGTATATTAATATCGTGGAGATAG 57.185 37.037 11.28 0.00 44.30 2.08
2494 3773 0.698238 AGCAATTACACCCAGCCTCA 59.302 50.000 0.00 0.00 0.00 3.86
2621 3906 2.763448 AGCAGCAACCCAACAAAACTAA 59.237 40.909 0.00 0.00 0.00 2.24
2651 3936 4.037089 AGACAACACCCGGAATACAAAAAC 59.963 41.667 0.73 0.00 0.00 2.43
2713 3999 3.333189 CGCCATCGTCGCCTGATG 61.333 66.667 4.88 4.88 42.26 3.07
2744 4032 3.425659 AGGTTTTCATCCTGGAGAAAGC 58.574 45.455 18.22 18.22 35.41 3.51
2830 4118 4.278419 CCTTAGGTTTTCACCCTGAAAGTG 59.722 45.833 0.00 0.00 45.77 3.16
2856 4144 3.583383 GCACTTGAGAAGCGCCAT 58.417 55.556 2.29 0.00 30.51 4.40
3021 4319 2.224867 CCAACACTGGTCCTCCAATCTT 60.225 50.000 0.00 0.00 43.81 2.40
3311 4619 0.328258 AATGCTAGGACCACCACCAC 59.672 55.000 0.00 0.00 38.94 4.16
3318 4626 3.484953 AGGACCACCACCACTAATCTA 57.515 47.619 0.00 0.00 38.94 1.98
3370 4680 0.615331 ACCCAGCATGAACGACAGAT 59.385 50.000 0.00 0.00 39.69 2.90
3409 4719 0.735978 TAGCAACTGCATGTCGTCGG 60.736 55.000 4.22 0.00 45.16 4.79
3441 4751 1.074951 GCCACAACCTGCTTACCCT 59.925 57.895 0.00 0.00 0.00 4.34
3521 4833 1.740585 CCATAGCCTAGATCGAGACCG 59.259 57.143 4.15 0.00 37.07 4.79
3542 4864 4.819761 GATCCAGCTCGCACGCCA 62.820 66.667 0.00 0.00 0.00 5.69
3587 4909 3.217743 CTCCCCCTCGACGCTACC 61.218 72.222 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 4.629634 CGTTGACTGCTCCATTACATGTAA 59.370 41.667 20.14 20.14 0.00 2.41
34 35 9.507329 TCATCTAGAAATAAATGCTCATTACCC 57.493 33.333 0.00 0.00 0.00 3.69
61 62 7.462724 GCTCGTTACATGTTAATGGAAAAATGC 60.463 37.037 2.30 0.00 38.39 3.56
207 221 7.280044 ACATACCAGGAAATACTTTAACCCT 57.720 36.000 0.00 0.00 0.00 4.34
586 601 4.359434 TTGCCTACTCCACACACATTTA 57.641 40.909 0.00 0.00 0.00 1.40
598 613 2.026262 TCTTCCCACCATTTGCCTACTC 60.026 50.000 0.00 0.00 0.00 2.59
614 629 6.801539 TCATATTATTCGCCAACATCTTCC 57.198 37.500 0.00 0.00 0.00 3.46
615 630 9.121517 CATTTCATATTATTCGCCAACATCTTC 57.878 33.333 0.00 0.00 0.00 2.87
619 634 8.412456 TGTTCATTTCATATTATTCGCCAACAT 58.588 29.630 0.00 0.00 0.00 2.71
624 639 8.988934 TCTACTGTTCATTTCATATTATTCGCC 58.011 33.333 0.00 0.00 0.00 5.54
684 699 6.585322 CCTAACGAAGTCCTTAAGTACAACTG 59.415 42.308 0.68 0.00 45.00 3.16
694 709 6.899393 TTGAGTAACCTAACGAAGTCCTTA 57.101 37.500 0.00 0.00 45.00 2.69
708 723 4.517832 AGGGTCGACAAATTTTGAGTAACC 59.482 41.667 18.91 14.67 0.00 2.85
710 725 5.127491 ACAGGGTCGACAAATTTTGAGTAA 58.873 37.500 18.91 0.00 0.00 2.24
729 744 3.466836 TGCTACTTGTTGTCTCAACAGG 58.533 45.455 18.32 18.32 36.57 4.00
742 757 1.542915 AGTGCATTTGCCTGCTACTTG 59.457 47.619 0.00 0.00 42.75 3.16
763 1647 5.689961 CACGCATTAACCAACTTAGCTTTTT 59.310 36.000 0.00 0.00 0.00 1.94
808 1692 2.738013 AACGGTAGTTGCTACTCACC 57.262 50.000 3.45 9.86 39.48 4.02
819 1703 3.328637 ACCCTCATTTAACCAACGGTAGT 59.671 43.478 0.00 0.00 33.12 2.73
847 1733 2.437359 ATGCCTTCGGACAGCAGC 60.437 61.111 7.16 0.00 40.40 5.25
896 2021 7.644551 CGCCTACTAGTATACTTTGACTTTCTG 59.355 40.741 11.40 0.00 0.00 3.02
916 2041 0.179081 GTGATCTCCAACCCGCCTAC 60.179 60.000 0.00 0.00 0.00 3.18
928 2053 3.247173 GCCATTCATTCAGACGTGATCTC 59.753 47.826 0.00 0.00 34.41 2.75
1054 2182 3.367087 GCTCGAACAAACTGGTCTAGCTA 60.367 47.826 10.12 0.00 45.87 3.32
1055 2183 2.610727 GCTCGAACAAACTGGTCTAGCT 60.611 50.000 10.12 0.00 45.87 3.32
1063 2191 2.170985 CGGCGCTCGAACAAACTG 59.829 61.111 7.64 0.00 42.43 3.16
1211 2355 0.647410 GCACCTTGTCACGATCATCG 59.353 55.000 5.22 5.22 46.93 3.84
1485 2656 4.020617 CCCAGGAAGCAGCCGTCA 62.021 66.667 0.00 0.00 0.00 4.35
1680 2863 2.879462 CCGTTGCTCGCCGTAGAC 60.879 66.667 0.00 0.00 38.35 2.59
1681 2874 4.789075 GCCGTTGCTCGCCGTAGA 62.789 66.667 0.00 0.00 38.35 2.59
1773 2966 2.203167 CTGGCCATCTGCAGCGAT 60.203 61.111 5.51 0.00 43.89 4.58
1869 3077 4.414956 TCTCCCAGGGGCGGTGAT 62.415 66.667 5.33 0.00 34.68 3.06
1969 3223 2.336809 GATCCTCCCTACAGCGCG 59.663 66.667 0.00 0.00 0.00 6.86
2034 3288 3.066190 AGCACGGCTACGGCTACA 61.066 61.111 0.00 0.00 46.48 2.74
2083 3349 2.290514 ACATACCTGATGCTGTTGCTGT 60.291 45.455 0.00 0.00 39.39 4.40
2084 3350 2.362736 ACATACCTGATGCTGTTGCTG 58.637 47.619 0.00 0.00 39.39 4.41
2085 3351 2.795231 ACATACCTGATGCTGTTGCT 57.205 45.000 0.00 0.00 39.39 3.91
2086 3352 3.535561 AGTACATACCTGATGCTGTTGC 58.464 45.455 0.00 0.00 39.39 4.17
2087 3353 5.016051 AGAGTACATACCTGATGCTGTTG 57.984 43.478 0.00 0.00 39.39 3.33
2088 3354 4.959210 AGAGAGTACATACCTGATGCTGTT 59.041 41.667 0.00 0.00 39.39 3.16
2089 3355 4.541705 AGAGAGTACATACCTGATGCTGT 58.458 43.478 0.00 0.00 39.39 4.40
2107 3373 2.604912 TCTGCAACCAGGTAGAGAGA 57.395 50.000 0.00 0.00 39.61 3.10
2109 3375 3.447586 GTGTATCTGCAACCAGGTAGAGA 59.552 47.826 0.00 0.00 35.41 3.10
2114 3380 0.328258 GGGTGTATCTGCAACCAGGT 59.672 55.000 6.83 0.00 45.28 4.00
2115 3381 3.175133 GGGTGTATCTGCAACCAGG 57.825 57.895 6.83 0.00 45.28 4.45
2118 3384 3.088532 TCAAATGGGTGTATCTGCAACC 58.911 45.455 0.00 0.00 46.12 3.77
2119 3385 4.485163 GTTCAAATGGGTGTATCTGCAAC 58.515 43.478 0.00 0.00 0.00 4.17
2120 3386 3.190327 CGTTCAAATGGGTGTATCTGCAA 59.810 43.478 0.00 0.00 0.00 4.08
2121 3387 2.746904 CGTTCAAATGGGTGTATCTGCA 59.253 45.455 0.00 0.00 0.00 4.41
2122 3388 3.006940 TCGTTCAAATGGGTGTATCTGC 58.993 45.455 0.00 0.00 0.00 4.26
2123 3389 4.000325 TGTCGTTCAAATGGGTGTATCTG 59.000 43.478 0.00 0.00 0.00 2.90
2124 3390 4.280436 TGTCGTTCAAATGGGTGTATCT 57.720 40.909 0.00 0.00 0.00 1.98
2125 3391 5.365403 TTTGTCGTTCAAATGGGTGTATC 57.635 39.130 4.91 0.00 40.56 2.24
2138 3404 9.543018 CCTTTTATCTGAAACTATTTGTCGTTC 57.457 33.333 0.00 0.00 0.00 3.95
2139 3405 9.280174 TCCTTTTATCTGAAACTATTTGTCGTT 57.720 29.630 0.00 0.00 0.00 3.85
2140 3406 8.842358 TCCTTTTATCTGAAACTATTTGTCGT 57.158 30.769 0.00 0.00 0.00 4.34
2141 3407 8.936864 ACTCCTTTTATCTGAAACTATTTGTCG 58.063 33.333 0.00 0.00 0.00 4.35
2152 3418 9.667107 CCAAACATAGTACTCCTTTTATCTGAA 57.333 33.333 0.00 0.00 0.00 3.02
2153 3419 8.265055 CCCAAACATAGTACTCCTTTTATCTGA 58.735 37.037 0.00 0.00 0.00 3.27
2154 3420 7.012421 GCCCAAACATAGTACTCCTTTTATCTG 59.988 40.741 0.00 0.00 0.00 2.90
2155 3421 7.054751 GCCCAAACATAGTACTCCTTTTATCT 58.945 38.462 0.00 0.00 0.00 1.98
2156 3422 6.262496 GGCCCAAACATAGTACTCCTTTTATC 59.738 42.308 0.00 0.00 0.00 1.75
2157 3423 6.069029 AGGCCCAAACATAGTACTCCTTTTAT 60.069 38.462 0.00 0.00 0.00 1.40
2158 3424 5.252164 AGGCCCAAACATAGTACTCCTTTTA 59.748 40.000 0.00 0.00 0.00 1.52
2159 3425 4.044191 AGGCCCAAACATAGTACTCCTTTT 59.956 41.667 0.00 0.00 0.00 2.27
2160 3426 3.591977 AGGCCCAAACATAGTACTCCTTT 59.408 43.478 0.00 0.00 0.00 3.11
2161 3427 3.190439 AGGCCCAAACATAGTACTCCTT 58.810 45.455 0.00 0.00 0.00 3.36
2162 3428 2.772515 GAGGCCCAAACATAGTACTCCT 59.227 50.000 0.00 0.00 0.00 3.69
2163 3429 2.483188 CGAGGCCCAAACATAGTACTCC 60.483 54.545 0.00 0.00 0.00 3.85
2164 3430 2.167900 ACGAGGCCCAAACATAGTACTC 59.832 50.000 0.00 0.00 0.00 2.59
2168 3434 1.073284 ACAACGAGGCCCAAACATAGT 59.927 47.619 0.00 0.00 0.00 2.12
2177 3443 1.534729 ATTTCTCAACAACGAGGCCC 58.465 50.000 0.00 0.00 33.59 5.80
2191 3457 6.916360 TTCTCAACAATTAGGCCAATTTCT 57.084 33.333 5.01 0.00 34.49 2.52
2209 3475 6.009589 TCTCAACAATTAGGCCAATTTCTCA 58.990 36.000 5.01 0.00 34.49 3.27
2210 3476 6.515272 TCTCAACAATTAGGCCAATTTCTC 57.485 37.500 5.01 0.00 34.49 2.87
2211 3477 6.916360 TTCTCAACAATTAGGCCAATTTCT 57.084 33.333 5.01 0.00 34.49 2.52
2212 3478 9.822185 ATATTTCTCAACAATTAGGCCAATTTC 57.178 29.630 5.01 0.00 34.49 2.17
2215 3481 9.420118 TGTATATTTCTCAACAATTAGGCCAAT 57.580 29.630 5.01 0.00 0.00 3.16
2216 3482 8.815565 TGTATATTTCTCAACAATTAGGCCAA 57.184 30.769 5.01 0.00 0.00 4.52
2217 3483 8.995027 ATGTATATTTCTCAACAATTAGGCCA 57.005 30.769 5.01 0.00 0.00 5.36
2218 3484 9.289782 AGATGTATATTTCTCAACAATTAGGCC 57.710 33.333 0.00 0.00 0.00 5.19
2290 3556 6.935240 TCTTATTATCCCGGTCAGATCATT 57.065 37.500 0.00 0.00 0.00 2.57
2311 3577 1.688735 GCTTTTGTTTGGCCTCCTTCT 59.311 47.619 3.32 0.00 0.00 2.85
2316 3589 1.541015 CCCTTGCTTTTGTTTGGCCTC 60.541 52.381 3.32 0.00 0.00 4.70
2350 3623 1.486310 CTAGCTATGTGTGCCCTGGAA 59.514 52.381 0.00 0.00 0.00 3.53
2354 3627 2.700897 CCTAACTAGCTATGTGTGCCCT 59.299 50.000 0.00 0.00 0.00 5.19
2390 3668 0.745468 GTAACACCACCCCGCAAAAA 59.255 50.000 0.00 0.00 0.00 1.94
2391 3669 0.106619 AGTAACACCACCCCGCAAAA 60.107 50.000 0.00 0.00 0.00 2.44
2392 3670 0.820074 CAGTAACACCACCCCGCAAA 60.820 55.000 0.00 0.00 0.00 3.68
2393 3671 1.228003 CAGTAACACCACCCCGCAA 60.228 57.895 0.00 0.00 0.00 4.85
2394 3672 1.985460 AACAGTAACACCACCCCGCA 61.985 55.000 0.00 0.00 0.00 5.69
2395 3673 0.035176 TAACAGTAACACCACCCCGC 59.965 55.000 0.00 0.00 0.00 6.13
2396 3674 1.799544 GTAACAGTAACACCACCCCG 58.200 55.000 0.00 0.00 0.00 5.73
2397 3675 1.070601 ACGTAACAGTAACACCACCCC 59.929 52.381 0.00 0.00 0.00 4.95
2398 3676 2.137523 CACGTAACAGTAACACCACCC 58.862 52.381 0.00 0.00 0.00 4.61
2399 3677 3.096489 TCACGTAACAGTAACACCACC 57.904 47.619 0.00 0.00 0.00 4.61
2400 3678 4.384846 CAGATCACGTAACAGTAACACCAC 59.615 45.833 0.00 0.00 0.00 4.16
2401 3679 4.038282 ACAGATCACGTAACAGTAACACCA 59.962 41.667 0.00 0.00 0.00 4.17
2402 3680 4.553323 ACAGATCACGTAACAGTAACACC 58.447 43.478 0.00 0.00 0.00 4.16
2403 3681 5.461078 ACAACAGATCACGTAACAGTAACAC 59.539 40.000 0.00 0.00 0.00 3.32
2404 3682 5.593968 ACAACAGATCACGTAACAGTAACA 58.406 37.500 0.00 0.00 0.00 2.41
2405 3683 7.663664 CATACAACAGATCACGTAACAGTAAC 58.336 38.462 0.00 0.00 0.00 2.50
2406 3684 6.309494 GCATACAACAGATCACGTAACAGTAA 59.691 38.462 0.00 0.00 0.00 2.24
2407 3685 5.803461 GCATACAACAGATCACGTAACAGTA 59.197 40.000 0.00 0.00 0.00 2.74
2408 3686 4.625742 GCATACAACAGATCACGTAACAGT 59.374 41.667 0.00 0.00 0.00 3.55
2409 3687 4.625311 TGCATACAACAGATCACGTAACAG 59.375 41.667 0.00 0.00 0.00 3.16
2410 3688 4.561105 TGCATACAACAGATCACGTAACA 58.439 39.130 0.00 0.00 0.00 2.41
2411 3689 5.718649 ATGCATACAACAGATCACGTAAC 57.281 39.130 0.00 0.00 0.00 2.50
2412 3690 6.735678 AAATGCATACAACAGATCACGTAA 57.264 33.333 0.00 0.00 0.00 3.18
2413 3691 6.735678 AAAATGCATACAACAGATCACGTA 57.264 33.333 0.00 0.00 0.00 3.57
2414 3692 5.627499 AAAATGCATACAACAGATCACGT 57.373 34.783 0.00 0.00 0.00 4.49
2468 3747 3.433598 GCTGGGTGTAATTGCTATCTCCA 60.434 47.826 0.00 0.00 0.00 3.86
2476 3755 1.098050 CTGAGGCTGGGTGTAATTGC 58.902 55.000 0.00 0.00 0.00 3.56
2494 3773 3.883830 TTGTGACATTTTGTTGGTGCT 57.116 38.095 0.00 0.00 0.00 4.40
2621 3906 0.750182 CCGGGTGTTGTCTTTGGTGT 60.750 55.000 0.00 0.00 0.00 4.16
2651 3936 2.966309 GCGTGGCCTTTGGAGAACG 61.966 63.158 3.32 3.61 0.00 3.95
2676 3962 1.972872 CTTGTGCACTGTTTCCCTCT 58.027 50.000 19.41 0.00 0.00 3.69
2709 3995 7.056635 GGATGAAAACCTAAGATCTTCCATCA 58.943 38.462 12.24 9.50 36.59 3.07
2713 3999 5.825151 CCAGGATGAAAACCTAAGATCTTCC 59.175 44.000 12.24 2.80 36.74 3.46
2744 4032 5.640189 AGGAATTGTTTTGAGAGCTCATG 57.360 39.130 17.77 0.00 39.64 3.07
2788 4076 1.745653 GGCCTGACCTTCATTAGTTGC 59.254 52.381 0.00 0.00 34.51 4.17
2830 4118 1.795286 CTTCTCAAGTGCCGAGTGTTC 59.205 52.381 0.00 0.00 0.00 3.18
2856 4144 3.569701 GCACTGGAGGAATTCAAGTTTGA 59.430 43.478 7.93 0.00 38.04 2.69
3021 4319 3.031736 GTGGAGAAGGTCATGGTAGCTA 58.968 50.000 0.00 0.00 0.00 3.32
3159 4460 6.183361 CCTGGATATCTGGATAGGATGGAATG 60.183 46.154 2.05 0.00 36.68 2.67
3311 4619 3.804873 GGGCTTGCGAGTCTTTAGATTAG 59.195 47.826 5.34 0.00 0.00 1.73
3318 4626 2.034221 GGGGGCTTGCGAGTCTTT 59.966 61.111 5.34 0.00 0.00 2.52
3370 4680 1.979155 CTGGGCTGTCGTCTCCTCA 60.979 63.158 0.00 0.00 0.00 3.86
3441 4751 2.897326 TCTAGTCAAGGCTTGTGCTACA 59.103 45.455 25.39 14.02 39.59 2.74
3587 4909 3.554342 CCTGAGGATCCAGGCGGG 61.554 72.222 15.82 13.16 46.16 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.