Multiple sequence alignment - TraesCS2B01G410900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G410900 chr2B 100.000 3215 0 0 1 3215 584474581 584477795 0.000000e+00 5938
1 TraesCS2B01G410900 chr2A 94.847 2057 65 15 710 2756 642728587 642730612 0.000000e+00 3173
2 TraesCS2B01G410900 chr2A 91.541 662 23 6 1 662 642727946 642728574 0.000000e+00 881
3 TraesCS2B01G410900 chr2A 96.744 430 11 3 2738 3165 642730638 642731066 0.000000e+00 713
4 TraesCS2B01G410900 chr2D 94.287 1873 66 10 1230 3090 498101940 498103783 0.000000e+00 2828
5 TraesCS2B01G410900 chr2D 93.539 681 39 3 1 680 498100482 498101158 0.000000e+00 1009
6 TraesCS2B01G410900 chr2D 94.253 522 17 6 710 1224 498101155 498101670 0.000000e+00 785
7 TraesCS2B01G410900 chr2D 92.651 381 27 1 2 382 425214346 425213967 6.060000e-152 547
8 TraesCS2B01G410900 chr2D 91.601 381 32 0 2 382 627324652 627324272 7.900000e-146 527
9 TraesCS2B01G410900 chr2D 90.598 117 8 3 3051 3165 498103770 498103885 5.560000e-33 152
10 TraesCS2B01G410900 chr1B 88.571 245 28 0 138 382 167949881 167949637 6.740000e-77 298


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G410900 chr2B 584474581 584477795 3214 False 5938.0 5938 100.000000 1 3215 1 chr2B.!!$F1 3214
1 TraesCS2B01G410900 chr2A 642727946 642731066 3120 False 1589.0 3173 94.377333 1 3165 3 chr2A.!!$F1 3164
2 TraesCS2B01G410900 chr2D 498100482 498103885 3403 False 1193.5 2828 93.169250 1 3165 4 chr2D.!!$F1 3164

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
701 703 0.310854 CTTTTCAAGGGGCACGACAC 59.689 55.0 0.0 0.0 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2277 2560 0.843309 TTGCTGAAACCCTCACCTCA 59.157 50.0 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 1.292223 CGGTCAAGGTCGTGTCCAT 59.708 57.895 2.15 0.00 0.00 3.41
88 89 0.669318 CGCAGAGCTTTACGTCCCAA 60.669 55.000 0.00 0.00 0.00 4.12
241 242 2.751436 AGCCGGTCGCGGTAGTAA 60.751 61.111 6.13 0.00 44.76 2.24
387 388 0.473755 TGGATATGCGCCATTCTGGT 59.526 50.000 4.18 0.00 40.46 4.00
503 505 1.402613 GTGCCCAATTTATACGCGGTT 59.597 47.619 12.47 0.00 0.00 4.44
504 506 1.671845 TGCCCAATTTATACGCGGTTC 59.328 47.619 12.47 0.00 0.00 3.62
539 541 1.162181 CCATTGCCATCGACGCATCT 61.162 55.000 9.62 0.00 35.83 2.90
545 547 2.287608 TGCCATCGACGCATCTTAGTAG 60.288 50.000 4.94 0.00 0.00 2.57
583 585 3.104766 CTTAGCTACCCGTCGCGA 58.895 61.111 3.71 3.71 0.00 5.87
654 656 5.538118 TGTTGAAATCGAGCTAGTCTTTCA 58.462 37.500 16.79 16.79 34.87 2.69
686 688 6.743575 CGATAGTCCATTCAGTTTCCTTTT 57.256 37.500 0.00 0.00 0.00 2.27
687 689 6.776094 CGATAGTCCATTCAGTTTCCTTTTC 58.224 40.000 0.00 0.00 0.00 2.29
688 690 6.371548 CGATAGTCCATTCAGTTTCCTTTTCA 59.628 38.462 0.00 0.00 0.00 2.69
689 691 7.094805 CGATAGTCCATTCAGTTTCCTTTTCAA 60.095 37.037 0.00 0.00 0.00 2.69
690 692 6.396829 AGTCCATTCAGTTTCCTTTTCAAG 57.603 37.500 0.00 0.00 0.00 3.02
698 700 4.492604 CCTTTTCAAGGGGCACGA 57.507 55.556 0.00 0.00 45.27 4.35
699 701 1.956802 CCTTTTCAAGGGGCACGAC 59.043 57.895 0.00 0.00 45.27 4.34
700 702 0.821711 CCTTTTCAAGGGGCACGACA 60.822 55.000 0.00 0.00 45.27 4.35
701 703 0.310854 CTTTTCAAGGGGCACGACAC 59.689 55.000 0.00 0.00 0.00 3.67
702 704 1.440938 TTTTCAAGGGGCACGACACG 61.441 55.000 0.00 0.00 0.00 4.49
703 705 2.313051 TTTCAAGGGGCACGACACGA 62.313 55.000 0.00 0.00 0.00 4.35
704 706 2.047274 CAAGGGGCACGACACGAT 60.047 61.111 0.00 0.00 0.00 3.73
705 707 2.100631 CAAGGGGCACGACACGATC 61.101 63.158 0.00 0.00 0.00 3.69
706 708 2.283529 AAGGGGCACGACACGATCT 61.284 57.895 0.00 0.00 0.00 2.75
707 709 2.507110 AAGGGGCACGACACGATCTG 62.507 60.000 0.00 0.00 0.00 2.90
708 710 3.188786 GGGCACGACACGATCTGC 61.189 66.667 0.00 0.00 33.30 4.26
709 711 2.432456 GGCACGACACGATCTGCA 60.432 61.111 4.94 0.00 34.80 4.41
710 712 2.447887 GGCACGACACGATCTGCAG 61.448 63.158 7.63 7.63 34.80 4.41
711 713 1.734477 GCACGACACGATCTGCAGT 60.734 57.895 14.67 0.42 33.88 4.40
712 714 1.949015 GCACGACACGATCTGCAGTG 61.949 60.000 14.67 7.99 43.46 3.66
722 724 2.156504 CGATCTGCAGTGTCACAAACTC 59.843 50.000 14.67 0.00 0.00 3.01
723 725 1.570813 TCTGCAGTGTCACAAACTCG 58.429 50.000 14.67 0.00 0.00 4.18
786 791 2.432444 TGAAAAGCCCAACTATGTCGG 58.568 47.619 0.00 0.00 0.00 4.79
870 884 3.120165 GCGGAATTTGTCTCTTCTTCCAC 60.120 47.826 0.00 0.00 36.06 4.02
876 890 1.620819 TGTCTCTTCTTCCACCTCTGC 59.379 52.381 0.00 0.00 0.00 4.26
879 893 0.473694 TCTTCTTCCACCTCTGCCCA 60.474 55.000 0.00 0.00 0.00 5.36
883 897 2.475371 CTTCCACCTCTGCCCACCTG 62.475 65.000 0.00 0.00 0.00 4.00
976 995 2.281761 CCACTCACCACACCAGCC 60.282 66.667 0.00 0.00 0.00 4.85
1386 1669 2.367377 CTGGCCTCCATCCTCCCA 60.367 66.667 3.32 0.00 30.82 4.37
1683 1966 1.518774 GGACGATTTCCACCGGCTA 59.481 57.895 0.00 0.00 45.10 3.93
1695 1978 1.030457 ACCGGCTACCTTACATCTCG 58.970 55.000 0.00 0.00 0.00 4.04
1908 2191 1.745232 ACCTGTCGTTGAAGTGCAAA 58.255 45.000 0.00 0.00 38.44 3.68
1917 2200 0.299300 TGAAGTGCAAAACGACGACG 59.701 50.000 5.58 5.58 45.75 5.12
2058 2341 3.135994 GTCCAAGCTGGTTTTAGACGAA 58.864 45.455 0.00 0.00 39.03 3.85
2166 2449 4.801521 TGGAATGGAGATTGTGGATGAT 57.198 40.909 0.00 0.00 0.00 2.45
2208 2491 7.562640 TGATTATGATGAACGCGATAGTTAC 57.437 36.000 15.93 0.00 34.00 2.50
2239 2522 2.097825 GGATGGTGATTTCTGCTTGCT 58.902 47.619 0.00 0.00 0.00 3.91
2277 2560 0.548031 ATGATGGGCGGTGACTTCAT 59.452 50.000 0.00 0.00 0.00 2.57
2278 2561 0.392863 TGATGGGCGGTGACTTCATG 60.393 55.000 0.00 0.00 0.00 3.07
2287 2571 1.065854 GGTGACTTCATGAGGTGAGGG 60.066 57.143 16.10 0.00 38.19 4.30
2396 2680 2.886523 TGAGTGGTTTCAGAAGGCAATG 59.113 45.455 0.00 0.00 0.00 2.82
2424 2708 4.666512 ACCATTGTGAATTGCTAGTTCCT 58.333 39.130 0.00 0.00 0.00 3.36
2505 2789 9.084533 AGATACCTAGTTTCTATGGTCATCTTC 57.915 37.037 0.00 0.00 34.33 2.87
2591 2875 4.568359 AGTCATCACGATTCAACTGTATGC 59.432 41.667 0.00 0.00 0.00 3.14
2608 2892 7.649973 ACTGTATGCTAGATAGTTAACCGAAG 58.350 38.462 0.88 0.00 0.00 3.79
2609 2893 7.284944 ACTGTATGCTAGATAGTTAACCGAAGT 59.715 37.037 0.88 0.00 0.00 3.01
2610 2894 8.681486 TGTATGCTAGATAGTTAACCGAAGTA 57.319 34.615 0.88 0.00 0.00 2.24
2611 2895 8.562892 TGTATGCTAGATAGTTAACCGAAGTAC 58.437 37.037 0.88 0.00 0.00 2.73
2612 2896 7.578310 ATGCTAGATAGTTAACCGAAGTACA 57.422 36.000 0.88 0.00 0.00 2.90
2613 2897 7.024340 TGCTAGATAGTTAACCGAAGTACAG 57.976 40.000 0.88 0.00 0.00 2.74
2614 2898 6.825213 TGCTAGATAGTTAACCGAAGTACAGA 59.175 38.462 0.88 0.00 0.00 3.41
2615 2899 7.337689 TGCTAGATAGTTAACCGAAGTACAGAA 59.662 37.037 0.88 0.00 0.00 3.02
2616 2900 7.643371 GCTAGATAGTTAACCGAAGTACAGAAC 59.357 40.741 0.88 0.00 0.00 3.01
2617 2901 7.458409 AGATAGTTAACCGAAGTACAGAACA 57.542 36.000 0.88 0.00 0.00 3.18
2618 2902 7.311408 AGATAGTTAACCGAAGTACAGAACAC 58.689 38.462 0.88 0.00 0.00 3.32
2619 2903 5.266733 AGTTAACCGAAGTACAGAACACA 57.733 39.130 0.88 0.00 0.00 3.72
2632 2916 5.947228 ACAGAACACATTTCATGTACAGG 57.053 39.130 0.00 0.00 42.70 4.00
2677 2961 6.025896 CACACAAAATAGAGTTGCAGCTATG 58.974 40.000 8.06 1.92 0.00 2.23
2729 3013 2.092103 TGTATTTGCCACAGGGGGTATC 60.092 50.000 0.00 0.00 37.04 2.24
2930 3258 2.231529 GGATAGCCTAGCTTCGAGACA 58.768 52.381 0.00 0.00 40.44 3.41
3052 3385 6.282199 TGTAGGTGAGACTTAATCCTGTTC 57.718 41.667 0.00 0.00 0.00 3.18
3060 3393 2.505819 ACTTAATCCTGTTCGGGCAGAT 59.494 45.455 8.38 0.00 38.70 2.90
3170 3530 9.816787 TTAAAGTTGGAATAAAATGTACTCCCT 57.183 29.630 0.00 0.00 0.00 4.20
3171 3531 7.939784 AAGTTGGAATAAAATGTACTCCCTC 57.060 36.000 0.00 0.00 0.00 4.30
3172 3532 6.424032 AGTTGGAATAAAATGTACTCCCTCC 58.576 40.000 0.00 0.00 0.00 4.30
3173 3533 5.031066 TGGAATAAAATGTACTCCCTCCG 57.969 43.478 0.00 0.00 0.00 4.63
3174 3534 4.472108 TGGAATAAAATGTACTCCCTCCGT 59.528 41.667 0.00 0.00 0.00 4.69
3175 3535 5.055144 GGAATAAAATGTACTCCCTCCGTC 58.945 45.833 0.00 0.00 0.00 4.79
3176 3536 4.684484 ATAAAATGTACTCCCTCCGTCC 57.316 45.455 0.00 0.00 0.00 4.79
3177 3537 1.201424 AAATGTACTCCCTCCGTCCC 58.799 55.000 0.00 0.00 0.00 4.46
3178 3538 0.042131 AATGTACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
3179 3539 0.264955 ATGTACTCCCTCCGTCCCAT 59.735 55.000 0.00 0.00 0.00 4.00
3180 3540 0.928505 TGTACTCCCTCCGTCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
3181 3541 1.502039 TGTACTCCCTCCGTCCCATAT 59.498 52.381 0.00 0.00 0.00 1.78
3182 3542 2.090943 TGTACTCCCTCCGTCCCATATT 60.091 50.000 0.00 0.00 0.00 1.28
3183 3543 1.718280 ACTCCCTCCGTCCCATATTC 58.282 55.000 0.00 0.00 0.00 1.75
3184 3544 1.220750 ACTCCCTCCGTCCCATATTCT 59.779 52.381 0.00 0.00 0.00 2.40
3185 3545 2.449730 ACTCCCTCCGTCCCATATTCTA 59.550 50.000 0.00 0.00 0.00 2.10
3186 3546 3.093057 CTCCCTCCGTCCCATATTCTAG 58.907 54.545 0.00 0.00 0.00 2.43
3187 3547 2.180276 CCCTCCGTCCCATATTCTAGG 58.820 57.143 0.00 0.00 0.00 3.02
3188 3548 2.225293 CCCTCCGTCCCATATTCTAGGA 60.225 54.545 0.00 0.00 0.00 2.94
3189 3549 2.826725 CCTCCGTCCCATATTCTAGGAC 59.173 54.545 0.00 0.00 45.49 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.541310 TTGACCGCGTTCCTGGAGAT 61.541 55.000 4.92 0.00 0.00 2.75
9 10 2.154798 CTTGACCGCGTTCCTGGAGA 62.155 60.000 4.92 0.00 0.00 3.71
39 40 4.819761 GGCTGCTCATGGCGTCGA 62.820 66.667 0.00 0.00 45.43 4.20
79 80 3.021473 GCCGTGGGATTGGGACGTA 62.021 63.158 0.00 0.00 0.00 3.57
172 173 4.008933 GCGTGGGTGCAGGAGTCT 62.009 66.667 0.00 0.00 34.15 3.24
387 388 4.342987 ACGCTCGCAGACGCAGAA 62.343 61.111 0.00 0.00 39.84 3.02
503 505 0.945099 TGGCACGTAAAATTGCACGA 59.055 45.000 16.41 0.00 40.75 4.35
504 506 1.975837 ATGGCACGTAAAATTGCACG 58.024 45.000 9.78 9.78 40.75 5.34
511 513 1.135546 CGATGGCAATGGCACGTAAAA 60.136 47.619 12.83 0.00 41.84 1.52
539 541 7.095940 CCAAAATCAAACGACTCGAACTACTAA 60.096 37.037 5.20 0.00 0.00 2.24
545 547 2.971261 GCCAAAATCAAACGACTCGAAC 59.029 45.455 5.20 0.00 0.00 3.95
593 595 1.300971 CGTGACCTCAACAGCCCATG 61.301 60.000 0.00 0.00 0.00 3.66
654 656 5.186021 ACTGAATGGACTATCGTGAAAGTCT 59.814 40.000 2.82 0.00 41.53 3.24
682 684 0.310854 GTGTCGTGCCCCTTGAAAAG 59.689 55.000 0.00 0.00 45.69 2.27
683 685 1.440938 CGTGTCGTGCCCCTTGAAAA 61.441 55.000 0.00 0.00 0.00 2.29
684 686 1.890041 CGTGTCGTGCCCCTTGAAA 60.890 57.895 0.00 0.00 0.00 2.69
685 687 2.107041 ATCGTGTCGTGCCCCTTGAA 62.107 55.000 0.00 0.00 0.00 2.69
686 688 2.501223 GATCGTGTCGTGCCCCTTGA 62.501 60.000 0.00 0.00 0.00 3.02
687 689 2.047274 ATCGTGTCGTGCCCCTTG 60.047 61.111 0.00 0.00 0.00 3.61
688 690 2.264794 GATCGTGTCGTGCCCCTT 59.735 61.111 0.00 0.00 0.00 3.95
689 691 2.680352 AGATCGTGTCGTGCCCCT 60.680 61.111 0.00 0.00 0.00 4.79
690 692 2.509336 CAGATCGTGTCGTGCCCC 60.509 66.667 0.00 0.00 0.00 5.80
691 693 3.188786 GCAGATCGTGTCGTGCCC 61.189 66.667 0.00 0.00 0.00 5.36
692 694 2.432456 TGCAGATCGTGTCGTGCC 60.432 61.111 0.48 0.00 33.07 5.01
693 695 1.734477 ACTGCAGATCGTGTCGTGC 60.734 57.895 23.35 0.00 33.98 5.34
694 696 0.664466 ACACTGCAGATCGTGTCGTG 60.664 55.000 23.35 8.12 40.06 4.35
695 697 0.387367 GACACTGCAGATCGTGTCGT 60.387 55.000 23.35 3.75 46.99 4.34
696 698 2.353807 GACACTGCAGATCGTGTCG 58.646 57.895 23.35 0.44 46.99 4.35
698 700 0.389025 TGTGACACTGCAGATCGTGT 59.611 50.000 23.35 15.37 46.20 4.49
699 701 1.501169 TTGTGACACTGCAGATCGTG 58.499 50.000 23.35 11.76 37.18 4.35
700 702 1.867233 GTTTGTGACACTGCAGATCGT 59.133 47.619 23.35 14.23 0.00 3.73
701 703 2.138320 AGTTTGTGACACTGCAGATCG 58.862 47.619 23.35 10.83 0.00 3.69
702 704 2.156504 CGAGTTTGTGACACTGCAGATC 59.843 50.000 23.35 17.48 0.00 2.75
703 705 2.138320 CGAGTTTGTGACACTGCAGAT 58.862 47.619 23.35 7.98 0.00 2.90
704 706 1.570813 CGAGTTTGTGACACTGCAGA 58.429 50.000 23.35 0.00 0.00 4.26
705 707 0.041839 GCGAGTTTGTGACACTGCAG 60.042 55.000 13.48 13.48 0.00 4.41
706 708 0.742635 TGCGAGTTTGTGACACTGCA 60.743 50.000 7.20 4.88 0.00 4.41
707 709 0.376852 TTGCGAGTTTGTGACACTGC 59.623 50.000 7.20 2.43 0.00 4.40
708 710 1.665679 ACTTGCGAGTTTGTGACACTG 59.334 47.619 7.20 0.00 29.87 3.66
709 711 2.024176 ACTTGCGAGTTTGTGACACT 57.976 45.000 7.20 0.00 29.87 3.55
710 712 2.825086 AACTTGCGAGTTTGTGACAC 57.175 45.000 13.90 0.00 43.48 3.67
736 738 4.210120 CAGTACTTGTGAGTTTGTGAGCTC 59.790 45.833 6.82 6.82 37.33 4.09
746 750 1.700955 ACGGTCCAGTACTTGTGAGT 58.299 50.000 0.00 0.00 39.97 3.41
786 791 0.389025 CTGGGCCTGTTTGTTTGGTC 59.611 55.000 4.53 0.00 0.00 4.02
845 850 4.023193 GGAAGAAGAGACAAATTCCGCAAA 60.023 41.667 0.00 0.00 30.90 3.68
883 897 4.484872 GTACAAGGGGGAGCGGCC 62.485 72.222 0.00 0.00 0.00 6.13
893 907 1.136565 CGGGCAAATGCGTACAAGG 59.863 57.895 0.00 0.00 43.26 3.61
895 909 0.238817 GTTCGGGCAAATGCGTACAA 59.761 50.000 0.00 0.00 43.26 2.41
1458 1741 2.427506 GAGATGTGGTTGTTGGAGACC 58.572 52.381 0.00 0.00 36.45 3.85
1683 1966 2.304092 TCATACGGCGAGATGTAAGGT 58.696 47.619 16.62 0.00 0.00 3.50
1695 1978 1.436600 CTGAGGCATCATCATACGGC 58.563 55.000 0.00 0.00 34.12 5.68
2058 2341 2.315176 CCCTCCTCTTCATCGTCATCT 58.685 52.381 0.00 0.00 0.00 2.90
2166 2449 2.982643 ATCATTGCCAGGCCCGTCA 61.983 57.895 9.64 0.00 0.00 4.35
2208 2491 2.385013 TCACCATCCAGTGTCAATCG 57.615 50.000 0.00 0.00 38.91 3.34
2277 2560 0.843309 TTGCTGAAACCCTCACCTCA 59.157 50.000 0.00 0.00 0.00 3.86
2278 2561 1.239347 GTTGCTGAAACCCTCACCTC 58.761 55.000 0.00 0.00 32.13 3.85
2287 2571 4.110036 AGTTGAAACCTGTTGCTGAAAC 57.890 40.909 0.00 0.00 39.41 2.78
2396 2680 9.884465 GAACTAGCAATTCACAATGGTATTATC 57.116 33.333 0.00 0.00 0.00 1.75
2438 2722 5.125417 TCTCAAGCAGGCAATGTAAAATACC 59.875 40.000 0.00 0.00 0.00 2.73
2505 2789 6.183360 GGGACAAATTTCACCTCGAGAAATAG 60.183 42.308 15.71 10.73 42.98 1.73
2511 2795 3.059352 AGGGACAAATTTCACCTCGAG 57.941 47.619 5.13 5.13 0.00 4.04
2591 2875 8.671921 TGTTCTGTACTTCGGTTAACTATCTAG 58.328 37.037 5.42 0.00 0.00 2.43
2632 2916 8.050121 GTGTGTGTCACAAATTGAATAAGAAC 57.950 34.615 7.38 0.00 46.28 3.01
2677 2961 9.180678 CTCATTACAACAATCAACAAACCTAAC 57.819 33.333 0.00 0.00 0.00 2.34
2798 3126 3.428452 GCACTAGACACTACATTACGGCA 60.428 47.826 0.00 0.00 0.00 5.69
2930 3258 9.508642 CCCTAAAAGAGAGACTGAAAATTAAGT 57.491 33.333 0.00 0.00 0.00 2.24
3052 3385 3.143728 TGATCAAATCATCATCTGCCCG 58.856 45.455 0.00 0.00 33.59 6.13
3060 3393 4.957327 TGCCCAAATCTGATCAAATCATCA 59.043 37.500 0.00 0.00 38.85 3.07
3165 3525 2.016905 AGAATATGGGACGGAGGGAG 57.983 55.000 0.00 0.00 0.00 4.30
3166 3526 2.225293 CCTAGAATATGGGACGGAGGGA 60.225 54.545 0.00 0.00 0.00 4.20
3167 3527 2.180276 CCTAGAATATGGGACGGAGGG 58.820 57.143 0.00 0.00 0.00 4.30
3168 3528 3.170991 TCCTAGAATATGGGACGGAGG 57.829 52.381 0.00 0.00 32.67 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.