Multiple sequence alignment - TraesCS2B01G410700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G410700 chr2B 100.000 3104 0 0 1 3104 584135973 584132870 0.000000e+00 5733
1 TraesCS2B01G410700 chr2B 93.130 393 23 3 2650 3039 689161791 689161400 9.660000e-160 573
2 TraesCS2B01G410700 chr2D 90.776 2190 130 30 7 2164 498055329 498053180 0.000000e+00 2859
3 TraesCS2B01G410700 chr2D 84.188 234 25 9 1543 1770 498053743 498053516 1.870000e-52 217
4 TraesCS2B01G410700 chr2A 87.641 2298 151 59 422 2649 642715165 642712931 0.000000e+00 2547
5 TraesCS2B01G410700 chr2A 93.333 195 9 2 161 355 642715385 642715195 5.070000e-73 285
6 TraesCS2B01G410700 chr2A 86.538 156 16 3 1647 1801 642713961 642713810 1.910000e-37 167
7 TraesCS2B01G410700 chr6B 93.924 395 17 5 2650 3039 21107610 21108002 9.590000e-165 590
8 TraesCS2B01G410700 chr3B 93.052 403 23 3 2640 3039 132397631 132398031 4.460000e-163 584
9 TraesCS2B01G410700 chr3B 93.434 396 21 3 2647 3039 55688245 55688638 1.600000e-162 582
10 TraesCS2B01G410700 chr3B 93.182 396 23 3 2647 3039 55696876 55697270 2.080000e-161 579
11 TraesCS2B01G410700 chr3B 92.621 393 26 2 2650 3039 2400919 2400527 2.090000e-156 562
12 TraesCS2B01G410700 chr5B 92.875 393 24 3 2649 3038 548124323 548123932 4.490000e-158 568
13 TraesCS2B01G410700 chr5B 92.621 393 25 3 2650 3039 705796168 705795777 2.090000e-156 562
14 TraesCS2B01G410700 chr1B 92.640 394 24 3 2649 3039 33077631 33078022 2.090000e-156 562


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G410700 chr2B 584132870 584135973 3103 True 5733.000000 5733 100.000000 1 3104 1 chr2B.!!$R1 3103
1 TraesCS2B01G410700 chr2D 498053180 498055329 2149 True 1538.000000 2859 87.482000 7 2164 2 chr2D.!!$R1 2157
2 TraesCS2B01G410700 chr2A 642712931 642715385 2454 True 999.666667 2547 89.170667 161 2649 3 chr2A.!!$R1 2488

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
744 785 0.025513 GTGAGAAAGCATACGCAGCG 59.974 55.0 14.82 14.82 42.27 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2402 2485 0.033405 CTCGAGGGTGAAGGGTAGGA 60.033 60.0 3.91 0.0 0.0 2.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 51 1.464997 GCCTTTTAACTCTGGAGTGCG 59.535 52.381 3.88 0.00 41.58 5.34
49 52 1.464997 CCTTTTAACTCTGGAGTGCGC 59.535 52.381 0.00 0.00 41.58 6.09
136 139 2.482374 GCTGCAAGACGCCATGAC 59.518 61.111 0.00 0.00 41.33 3.06
268 271 0.529773 GCGAATCAGACGGCCATACA 60.530 55.000 2.24 0.00 0.00 2.29
269 272 1.873903 GCGAATCAGACGGCCATACAT 60.874 52.381 2.24 0.00 0.00 2.29
270 273 1.794701 CGAATCAGACGGCCATACATG 59.205 52.381 2.24 0.00 0.00 3.21
271 274 1.532868 GAATCAGACGGCCATACATGC 59.467 52.381 2.24 0.00 0.00 4.06
427 442 0.604511 TGTGCCATCTGCTGTGTGAG 60.605 55.000 0.00 0.00 42.00 3.51
455 470 5.304101 TGAAATGCACATGTAACTTTTCCCT 59.696 36.000 22.89 4.03 30.53 4.20
526 564 0.950836 CGTGTCCATTCCACAGCAAA 59.049 50.000 0.00 0.00 33.00 3.68
548 586 6.380079 AAAGTTTCTGACCCTACAGATCAT 57.620 37.500 0.00 0.00 44.67 2.45
563 601 7.706607 CCTACAGATCATGTTTCTGATACGAAA 59.293 37.037 25.15 8.53 42.63 3.46
576 614 1.300697 ACGAAAGTGTCCCGTGCTC 60.301 57.895 0.00 0.00 46.97 4.26
630 669 1.071239 CGCTGTGAGTTTCGACACTTG 60.071 52.381 5.56 0.37 37.81 3.16
631 670 2.201732 GCTGTGAGTTTCGACACTTGA 58.798 47.619 5.56 0.00 37.81 3.02
701 741 6.260377 CACCGACAAGAATAGTATACAACGA 58.740 40.000 5.50 0.00 0.00 3.85
716 756 8.364894 AGTATACAACGATCATATGCCAAGTAA 58.635 33.333 5.50 0.00 0.00 2.24
744 785 0.025513 GTGAGAAAGCATACGCAGCG 59.974 55.000 14.82 14.82 42.27 5.18
747 788 1.060937 GAAAGCATACGCAGCGTGG 59.939 57.895 30.67 21.96 41.39 4.94
771 813 1.580942 CAATGTGCAACCACCGGAG 59.419 57.895 9.46 0.00 41.35 4.63
885 937 1.445410 GCAGTACATGCGACGTCCA 60.445 57.895 10.58 9.55 46.99 4.02
888 940 0.885879 AGTACATGCGACGTCCAGAA 59.114 50.000 10.58 0.00 0.00 3.02
889 941 1.271379 AGTACATGCGACGTCCAGAAA 59.729 47.619 10.58 0.00 0.00 2.52
898 950 0.383231 ACGTCCAGAAAGAACGTCGT 59.617 50.000 0.00 0.00 45.72 4.34
939 991 8.064447 GTGTAACGTAACACTAAACAAGATCA 57.936 34.615 0.00 0.00 45.12 2.92
949 1001 8.514330 ACACTAAACAAGATCACCAAAGTAAA 57.486 30.769 0.00 0.00 0.00 2.01
990 1042 0.182775 AAAACAAGACCACGAGCCCT 59.817 50.000 0.00 0.00 0.00 5.19
1947 2011 0.681564 GCGAGAGGAGGAGAGGAACA 60.682 60.000 0.00 0.00 0.00 3.18
1960 2024 0.322456 AGGAACAAGCGCCATTGCTA 60.322 50.000 2.29 0.00 46.60 3.49
1961 2025 0.525761 GGAACAAGCGCCATTGCTAA 59.474 50.000 2.29 0.00 46.60 3.09
1962 2026 1.617740 GAACAAGCGCCATTGCTAAC 58.382 50.000 2.29 0.00 46.60 2.34
1963 2027 0.958091 AACAAGCGCCATTGCTAACA 59.042 45.000 2.29 0.00 46.60 2.41
1980 2044 2.481289 ACAGCAGTTTAGCTTCCTCC 57.519 50.000 0.00 0.00 43.70 4.30
1983 2047 1.369839 GCAGTTTAGCTTCCTCCCGC 61.370 60.000 0.00 0.00 0.00 6.13
1990 2054 4.840005 CTTCCTCCCGCGCCTTCC 62.840 72.222 0.00 0.00 0.00 3.46
2002 2066 1.515521 CGCCTTCCCTTGCGTTCTTT 61.516 55.000 0.00 0.00 45.43 2.52
2003 2067 0.039165 GCCTTCCCTTGCGTTCTTTG 60.039 55.000 0.00 0.00 0.00 2.77
2005 2069 0.039165 CTTCCCTTGCGTTCTTTGCC 60.039 55.000 0.00 0.00 0.00 4.52
2008 2074 0.597377 CCCTTGCGTTCTTTGCCAAC 60.597 55.000 0.00 0.00 0.00 3.77
2013 2079 1.332375 TGCGTTCTTTGCCAACTACAC 59.668 47.619 0.00 0.00 0.00 2.90
2025 2091 3.516615 CCAACTACACTGCTCTAGCTTC 58.483 50.000 3.26 0.00 42.66 3.86
2116 2185 1.643880 TATATAGCGCGACGATCCGA 58.356 50.000 12.10 0.00 0.00 4.55
2146 2221 0.319727 GAGGCTCAGATCTGATGGCG 60.320 60.000 25.30 14.71 39.13 5.69
2178 2253 6.208599 TGACCAAATGAATGAACCTTCTTACC 59.791 38.462 0.00 0.00 0.00 2.85
2185 2260 0.323957 GAACCTTCTTACCGCCCAGT 59.676 55.000 0.00 0.00 0.00 4.00
2220 2300 3.486375 GCCAATAATGATCGATGGATGCG 60.486 47.826 0.54 0.00 32.82 4.73
2221 2301 3.934579 CCAATAATGATCGATGGATGCGA 59.065 43.478 0.54 0.00 42.48 5.10
2226 2306 3.310727 ATCGATGGATGCGATGCAA 57.689 47.368 0.00 0.00 45.74 4.08
2227 2307 1.817357 ATCGATGGATGCGATGCAAT 58.183 45.000 0.00 0.00 45.74 3.56
2228 2308 0.869730 TCGATGGATGCGATGCAATG 59.130 50.000 0.00 0.00 43.62 2.82
2229 2309 0.728129 CGATGGATGCGATGCAATGC 60.728 55.000 0.00 0.00 43.62 3.56
2352 2432 5.233988 CAGGTTTCATGCCCGAATTTAAAA 58.766 37.500 0.00 0.00 0.00 1.52
2359 2439 1.336056 GCCCGAATTTAAAACGGCACA 60.336 47.619 22.95 0.00 44.45 4.57
2360 2440 2.672760 GCCCGAATTTAAAACGGCACAT 60.673 45.455 22.95 0.00 44.45 3.21
2380 2460 4.100035 ACATCGATCTTCTCCTACATGCAA 59.900 41.667 0.00 0.00 0.00 4.08
2381 2461 4.944619 TCGATCTTCTCCTACATGCAAT 57.055 40.909 0.00 0.00 0.00 3.56
2383 2463 3.672397 CGATCTTCTCCTACATGCAATCG 59.328 47.826 0.00 0.00 0.00 3.34
2384 2464 4.626042 GATCTTCTCCTACATGCAATCGT 58.374 43.478 0.00 0.00 0.00 3.73
2385 2465 4.046938 TCTTCTCCTACATGCAATCGTC 57.953 45.455 0.00 0.00 0.00 4.20
2386 2466 2.492019 TCTCCTACATGCAATCGTCG 57.508 50.000 0.00 0.00 0.00 5.12
2393 2476 0.179100 CATGCAATCGTCGGGACTCT 60.179 55.000 0.00 0.00 0.00 3.24
2395 2478 2.167861 GCAATCGTCGGGACTCTGC 61.168 63.158 0.00 0.00 0.00 4.26
2399 2482 4.436998 CGTCGGGACTCTGCACCC 62.437 72.222 0.00 0.00 42.43 4.61
2404 2487 4.083862 GGACTCTGCACCCCGTCC 62.084 72.222 3.95 3.95 39.14 4.79
2416 2499 2.364780 CCCGTCCTACCCTTCACCC 61.365 68.421 0.00 0.00 0.00 4.61
2422 2505 0.033405 CCTACCCTTCACCCTCGAGA 60.033 60.000 15.71 0.00 0.00 4.04
2423 2506 1.394618 CTACCCTTCACCCTCGAGAG 58.605 60.000 15.71 2.13 0.00 3.20
2424 2507 0.997363 TACCCTTCACCCTCGAGAGA 59.003 55.000 15.71 6.03 39.12 3.10
2425 2508 0.612453 ACCCTTCACCCTCGAGAGAC 60.612 60.000 15.71 0.00 35.39 3.36
2426 2509 1.324005 CCCTTCACCCTCGAGAGACC 61.324 65.000 15.71 0.00 35.39 3.85
2427 2510 0.612174 CCTTCACCCTCGAGAGACCA 60.612 60.000 15.71 0.00 35.39 4.02
2428 2511 0.528470 CTTCACCCTCGAGAGACCAC 59.472 60.000 15.71 0.00 35.39 4.16
2429 2512 0.178973 TTCACCCTCGAGAGACCACA 60.179 55.000 15.71 0.00 35.39 4.17
2430 2513 0.894184 TCACCCTCGAGAGACCACAC 60.894 60.000 15.71 0.00 35.39 3.82
2431 2514 1.606889 ACCCTCGAGAGACCACACC 60.607 63.158 15.71 0.00 35.39 4.16
2432 2515 1.304547 CCCTCGAGAGACCACACCT 60.305 63.158 15.71 0.00 35.39 4.00
2433 2516 0.900647 CCCTCGAGAGACCACACCTT 60.901 60.000 15.71 0.00 35.39 3.50
2434 2517 0.244994 CCTCGAGAGACCACACCTTG 59.755 60.000 15.71 0.00 35.39 3.61
2435 2518 0.389166 CTCGAGAGACCACACCTTGC 60.389 60.000 6.58 0.00 35.39 4.01
2436 2519 1.112916 TCGAGAGACCACACCTTGCA 61.113 55.000 0.00 0.00 33.31 4.08
2437 2520 0.036952 CGAGAGACCACACCTTGCAT 60.037 55.000 0.00 0.00 0.00 3.96
2438 2521 1.204704 CGAGAGACCACACCTTGCATA 59.795 52.381 0.00 0.00 0.00 3.14
2439 2522 2.353704 CGAGAGACCACACCTTGCATAA 60.354 50.000 0.00 0.00 0.00 1.90
2440 2523 3.674997 GAGAGACCACACCTTGCATAAA 58.325 45.455 0.00 0.00 0.00 1.40
2441 2524 3.412386 AGAGACCACACCTTGCATAAAC 58.588 45.455 0.00 0.00 0.00 2.01
2442 2525 3.146066 GAGACCACACCTTGCATAAACA 58.854 45.455 0.00 0.00 0.00 2.83
2443 2526 3.561143 AGACCACACCTTGCATAAACAA 58.439 40.909 0.00 0.00 0.00 2.83
2444 2527 3.569701 AGACCACACCTTGCATAAACAAG 59.430 43.478 0.00 0.00 45.42 3.16
2470 2553 4.796231 CGTGGCGAGTTCGAGGGG 62.796 72.222 5.60 0.00 43.02 4.79
2476 2559 0.037975 GCGAGTTCGAGGGGTTAACA 60.038 55.000 8.10 0.00 43.02 2.41
2524 2611 1.865788 GCAAGAGGCCATGAACGCAA 61.866 55.000 5.01 0.00 36.11 4.85
2530 2617 2.953821 CCATGAACGCAAACGCCT 59.046 55.556 0.00 0.00 45.53 5.52
2583 2675 1.196808 ACGAATGATGGCAACGTGTTC 59.803 47.619 0.00 0.00 38.75 3.18
2649 2745 4.271816 CGAGCCTGGTCGATCCGG 62.272 72.222 13.03 1.02 42.85 5.14
2654 2750 2.499685 CTGGTCGATCCGGGGAAC 59.500 66.667 0.00 0.00 38.86 3.62
2655 2751 3.426117 CTGGTCGATCCGGGGAACG 62.426 68.421 10.71 10.71 40.87 3.95
2656 2752 3.455469 GGTCGATCCGGGGAACGT 61.455 66.667 15.56 0.00 40.48 3.99
2657 2753 2.120909 GGTCGATCCGGGGAACGTA 61.121 63.158 15.56 2.27 40.48 3.57
2658 2754 1.458639 GGTCGATCCGGGGAACGTAT 61.459 60.000 15.56 0.00 40.48 3.06
2659 2755 0.039708 GTCGATCCGGGGAACGTATC 60.040 60.000 15.56 0.00 40.48 2.24
2660 2756 0.179009 TCGATCCGGGGAACGTATCT 60.179 55.000 15.56 0.00 40.48 1.98
2661 2757 0.039437 CGATCCGGGGAACGTATCTG 60.039 60.000 0.00 0.00 42.24 2.90
2662 2758 0.317479 GATCCGGGGAACGTATCTGG 59.683 60.000 0.00 0.00 42.24 3.86
2663 2759 0.398098 ATCCGGGGAACGTATCTGGT 60.398 55.000 0.00 0.00 42.24 4.00
2664 2760 1.143183 CCGGGGAACGTATCTGGTG 59.857 63.158 0.00 0.00 42.24 4.17
2665 2761 1.520787 CGGGGAACGTATCTGGTGC 60.521 63.158 0.00 0.00 37.93 5.01
2666 2762 1.600107 GGGGAACGTATCTGGTGCA 59.400 57.895 0.00 0.00 0.00 4.57
2667 2763 0.743345 GGGGAACGTATCTGGTGCAC 60.743 60.000 8.80 8.80 0.00 4.57
2668 2764 0.743345 GGGAACGTATCTGGTGCACC 60.743 60.000 29.67 29.67 0.00 5.01
2669 2765 0.036765 GGAACGTATCTGGTGCACCA 60.037 55.000 35.49 35.49 45.30 4.17
2670 2766 1.609580 GGAACGTATCTGGTGCACCAA 60.610 52.381 36.71 26.88 46.97 3.67
2671 2767 1.732259 GAACGTATCTGGTGCACCAAG 59.268 52.381 36.71 28.54 46.97 3.61
2672 2768 0.036388 ACGTATCTGGTGCACCAAGG 60.036 55.000 36.71 28.27 46.97 3.61
2673 2769 1.369091 CGTATCTGGTGCACCAAGGC 61.369 60.000 36.71 24.56 46.97 4.35
2674 2770 0.322456 GTATCTGGTGCACCAAGGCA 60.322 55.000 36.71 21.83 46.97 4.75
2675 2771 0.403655 TATCTGGTGCACCAAGGCAA 59.596 50.000 36.71 20.61 46.97 4.52
2676 2772 0.251922 ATCTGGTGCACCAAGGCAAT 60.252 50.000 36.71 21.76 46.97 3.56
2677 2773 0.469705 TCTGGTGCACCAAGGCAATT 60.470 50.000 36.71 0.00 46.97 2.32
2678 2774 0.320073 CTGGTGCACCAAGGCAATTG 60.320 55.000 36.71 20.12 46.97 2.32
2698 2794 2.109181 GCTAGGTGCATCGGACCC 59.891 66.667 0.54 0.00 42.31 4.46
2699 2795 2.435693 GCTAGGTGCATCGGACCCT 61.436 63.158 0.54 0.00 42.31 4.34
2700 2796 1.443407 CTAGGTGCATCGGACCCTG 59.557 63.158 0.54 0.00 33.51 4.45
2701 2797 1.305802 TAGGTGCATCGGACCCTGT 60.306 57.895 0.54 0.00 33.51 4.00
2702 2798 0.907704 TAGGTGCATCGGACCCTGTT 60.908 55.000 0.54 0.00 33.51 3.16
2703 2799 2.040544 GGTGCATCGGACCCTGTTG 61.041 63.158 0.00 0.00 0.00 3.33
2704 2800 2.359850 TGCATCGGACCCTGTTGC 60.360 61.111 0.00 0.00 0.00 4.17
2705 2801 2.359850 GCATCGGACCCTGTTGCA 60.360 61.111 0.00 0.00 33.58 4.08
2706 2802 2.690778 GCATCGGACCCTGTTGCAC 61.691 63.158 0.00 0.00 33.58 4.57
2707 2803 1.302431 CATCGGACCCTGTTGCACA 60.302 57.895 0.00 0.00 0.00 4.57
2708 2804 0.677731 CATCGGACCCTGTTGCACAT 60.678 55.000 0.00 0.00 0.00 3.21
2709 2805 0.038166 ATCGGACCCTGTTGCACATT 59.962 50.000 0.00 0.00 0.00 2.71
2710 2806 0.605319 TCGGACCCTGTTGCACATTC 60.605 55.000 0.00 0.00 0.00 2.67
2711 2807 0.888736 CGGACCCTGTTGCACATTCA 60.889 55.000 0.00 0.00 0.00 2.57
2712 2808 1.327303 GGACCCTGTTGCACATTCAA 58.673 50.000 0.00 0.00 0.00 2.69
2713 2809 1.686052 GGACCCTGTTGCACATTCAAA 59.314 47.619 0.00 0.00 0.00 2.69
2714 2810 2.102252 GGACCCTGTTGCACATTCAAAA 59.898 45.455 0.00 0.00 0.00 2.44
2715 2811 3.431486 GGACCCTGTTGCACATTCAAAAA 60.431 43.478 0.00 0.00 0.00 1.94
2716 2812 4.379652 GACCCTGTTGCACATTCAAAAAT 58.620 39.130 0.00 0.00 0.00 1.82
2717 2813 5.510520 GGACCCTGTTGCACATTCAAAAATA 60.511 40.000 0.00 0.00 0.00 1.40
2718 2814 6.112927 ACCCTGTTGCACATTCAAAAATAT 57.887 33.333 0.00 0.00 0.00 1.28
2719 2815 6.532826 ACCCTGTTGCACATTCAAAAATATT 58.467 32.000 0.00 0.00 0.00 1.28
2720 2816 6.650390 ACCCTGTTGCACATTCAAAAATATTC 59.350 34.615 0.00 0.00 0.00 1.75
2721 2817 6.649973 CCCTGTTGCACATTCAAAAATATTCA 59.350 34.615 0.00 0.00 0.00 2.57
2722 2818 7.148540 CCCTGTTGCACATTCAAAAATATTCAG 60.149 37.037 0.00 0.00 0.00 3.02
2723 2819 7.599621 CCTGTTGCACATTCAAAAATATTCAGA 59.400 33.333 0.00 0.00 0.00 3.27
2724 2820 8.883954 TGTTGCACATTCAAAAATATTCAGAA 57.116 26.923 0.00 0.00 0.00 3.02
2725 2821 9.322773 TGTTGCACATTCAAAAATATTCAGAAA 57.677 25.926 0.00 0.00 0.00 2.52
2770 2866 9.541143 TGTATCGACACAATATCAATGTATGTT 57.459 29.630 0.00 0.00 0.00 2.71
2771 2867 9.797473 GTATCGACACAATATCAATGTATGTTG 57.203 33.333 0.00 0.00 34.98 3.33
2772 2868 7.245419 TCGACACAATATCAATGTATGTTGG 57.755 36.000 0.00 0.00 33.61 3.77
2773 2869 5.909054 CGACACAATATCAATGTATGTTGGC 59.091 40.000 0.00 0.00 33.61 4.52
2774 2870 5.820131 ACACAATATCAATGTATGTTGGCG 58.180 37.500 0.00 0.00 33.61 5.69
2775 2871 4.676471 CACAATATCAATGTATGTTGGCGC 59.324 41.667 0.00 0.00 33.61 6.53
2776 2872 4.337836 ACAATATCAATGTATGTTGGCGCA 59.662 37.500 10.83 0.00 33.61 6.09
2777 2873 5.163571 ACAATATCAATGTATGTTGGCGCAA 60.164 36.000 10.83 0.00 33.61 4.85
2778 2874 3.865011 ATCAATGTATGTTGGCGCAAA 57.135 38.095 10.83 0.00 0.00 3.68
2779 2875 3.650070 TCAATGTATGTTGGCGCAAAA 57.350 38.095 10.83 0.00 0.00 2.44
2780 2876 3.982475 TCAATGTATGTTGGCGCAAAAA 58.018 36.364 10.83 0.00 0.00 1.94
2781 2877 4.564041 TCAATGTATGTTGGCGCAAAAAT 58.436 34.783 10.83 7.78 0.00 1.82
2782 2878 4.993584 TCAATGTATGTTGGCGCAAAAATT 59.006 33.333 5.28 0.00 0.00 1.82
2783 2879 5.468072 TCAATGTATGTTGGCGCAAAAATTT 59.532 32.000 5.28 0.00 0.00 1.82
2784 2880 6.646653 TCAATGTATGTTGGCGCAAAAATTTA 59.353 30.769 5.28 0.00 0.00 1.40
2785 2881 7.171508 TCAATGTATGTTGGCGCAAAAATTTAA 59.828 29.630 5.28 0.00 0.00 1.52
2786 2882 6.844696 TGTATGTTGGCGCAAAAATTTAAA 57.155 29.167 5.28 0.00 0.00 1.52
2787 2883 7.426929 TGTATGTTGGCGCAAAAATTTAAAT 57.573 28.000 5.28 0.00 0.00 1.40
2788 2884 7.513968 TGTATGTTGGCGCAAAAATTTAAATC 58.486 30.769 5.28 0.00 0.00 2.17
2789 2885 5.991328 TGTTGGCGCAAAAATTTAAATCA 57.009 30.435 10.83 0.00 0.00 2.57
2790 2886 6.363577 TGTTGGCGCAAAAATTTAAATCAA 57.636 29.167 10.83 0.00 0.00 2.57
2791 2887 6.785191 TGTTGGCGCAAAAATTTAAATCAAA 58.215 28.000 10.83 0.00 0.00 2.69
2792 2888 7.250569 TGTTGGCGCAAAAATTTAAATCAAAA 58.749 26.923 10.83 0.00 0.00 2.44
2793 2889 7.917505 TGTTGGCGCAAAAATTTAAATCAAAAT 59.082 25.926 10.83 0.00 0.00 1.82
2794 2890 8.750416 GTTGGCGCAAAAATTTAAATCAAAATT 58.250 25.926 10.83 0.00 40.02 1.82
2795 2891 8.499514 TGGCGCAAAAATTTAAATCAAAATTC 57.500 26.923 10.83 0.00 37.93 2.17
2796 2892 8.131100 TGGCGCAAAAATTTAAATCAAAATTCA 58.869 25.926 10.83 0.00 37.93 2.57
2797 2893 8.962111 GGCGCAAAAATTTAAATCAAAATTCAA 58.038 25.926 10.83 0.00 37.93 2.69
2798 2894 9.762600 GCGCAAAAATTTAAATCAAAATTCAAC 57.237 25.926 0.30 0.00 37.93 3.18
2807 2903 8.899427 TTAAATCAAAATTCAACCAATGCTCA 57.101 26.923 0.00 0.00 0.00 4.26
2808 2904 7.804843 AAATCAAAATTCAACCAATGCTCAA 57.195 28.000 0.00 0.00 0.00 3.02
2809 2905 7.429636 AATCAAAATTCAACCAATGCTCAAG 57.570 32.000 0.00 0.00 0.00 3.02
2810 2906 6.159299 TCAAAATTCAACCAATGCTCAAGA 57.841 33.333 0.00 0.00 0.00 3.02
2811 2907 6.761312 TCAAAATTCAACCAATGCTCAAGAT 58.239 32.000 0.00 0.00 0.00 2.40
2812 2908 7.894708 TCAAAATTCAACCAATGCTCAAGATA 58.105 30.769 0.00 0.00 0.00 1.98
2813 2909 7.814107 TCAAAATTCAACCAATGCTCAAGATAC 59.186 33.333 0.00 0.00 0.00 2.24
2814 2910 6.839124 AATTCAACCAATGCTCAAGATACA 57.161 33.333 0.00 0.00 0.00 2.29
2815 2911 6.839124 ATTCAACCAATGCTCAAGATACAA 57.161 33.333 0.00 0.00 0.00 2.41
2816 2912 6.647334 TTCAACCAATGCTCAAGATACAAA 57.353 33.333 0.00 0.00 0.00 2.83
2817 2913 6.647334 TCAACCAATGCTCAAGATACAAAA 57.353 33.333 0.00 0.00 0.00 2.44
2818 2914 7.048629 TCAACCAATGCTCAAGATACAAAAA 57.951 32.000 0.00 0.00 0.00 1.94
2819 2915 7.669427 TCAACCAATGCTCAAGATACAAAAAT 58.331 30.769 0.00 0.00 0.00 1.82
2820 2916 7.599621 TCAACCAATGCTCAAGATACAAAAATG 59.400 33.333 0.00 0.00 0.00 2.32
2821 2917 7.230849 ACCAATGCTCAAGATACAAAAATGA 57.769 32.000 0.00 0.00 0.00 2.57
2822 2918 7.092716 ACCAATGCTCAAGATACAAAAATGAC 58.907 34.615 0.00 0.00 0.00 3.06
2823 2919 7.092079 CCAATGCTCAAGATACAAAAATGACA 58.908 34.615 0.00 0.00 0.00 3.58
2824 2920 7.599621 CCAATGCTCAAGATACAAAAATGACAA 59.400 33.333 0.00 0.00 0.00 3.18
2825 2921 8.980610 CAATGCTCAAGATACAAAAATGACAAA 58.019 29.630 0.00 0.00 0.00 2.83
2826 2922 9.715121 AATGCTCAAGATACAAAAATGACAAAT 57.285 25.926 0.00 0.00 0.00 2.32
2827 2923 9.715121 ATGCTCAAGATACAAAAATGACAAATT 57.285 25.926 0.00 0.00 0.00 1.82
2828 2924 9.545105 TGCTCAAGATACAAAAATGACAAATTT 57.455 25.926 0.00 0.00 0.00 1.82
2842 2938 9.777297 AAATGACAAATTTAACCTTAATGTGCT 57.223 25.926 0.00 0.00 0.00 4.40
2847 2943 9.651913 ACAAATTTAACCTTAATGTGCTAATGG 57.348 29.630 0.00 0.00 0.00 3.16
2848 2944 9.097257 CAAATTTAACCTTAATGTGCTAATGGG 57.903 33.333 0.00 0.00 0.00 4.00
2849 2945 5.845391 TTAACCTTAATGTGCTAATGGGC 57.155 39.130 0.00 0.00 0.00 5.36
2850 2946 2.666317 ACCTTAATGTGCTAATGGGCC 58.334 47.619 0.00 0.00 0.00 5.80
2851 2947 2.024464 ACCTTAATGTGCTAATGGGCCA 60.024 45.455 9.61 9.61 0.00 5.36
2852 2948 3.030291 CCTTAATGTGCTAATGGGCCAA 58.970 45.455 11.89 0.00 0.00 4.52
2853 2949 3.450457 CCTTAATGTGCTAATGGGCCAAA 59.550 43.478 11.89 0.00 0.00 3.28
2854 2950 4.081198 CCTTAATGTGCTAATGGGCCAAAA 60.081 41.667 11.89 0.00 0.00 2.44
2855 2951 5.486526 CTTAATGTGCTAATGGGCCAAAAA 58.513 37.500 11.89 0.00 0.00 1.94
2856 2952 4.573021 AATGTGCTAATGGGCCAAAAAT 57.427 36.364 11.89 0.00 0.00 1.82
2857 2953 3.331478 TGTGCTAATGGGCCAAAAATG 57.669 42.857 11.89 0.24 0.00 2.32
2858 2954 2.902486 TGTGCTAATGGGCCAAAAATGA 59.098 40.909 11.89 0.00 0.00 2.57
2859 2955 3.326006 TGTGCTAATGGGCCAAAAATGAA 59.674 39.130 11.89 0.00 0.00 2.57
2860 2956 3.934579 GTGCTAATGGGCCAAAAATGAAG 59.065 43.478 11.89 1.50 0.00 3.02
2861 2957 2.938451 GCTAATGGGCCAAAAATGAAGC 59.062 45.455 11.89 8.25 0.00 3.86
2862 2958 2.495155 AATGGGCCAAAAATGAAGCC 57.505 45.000 11.89 0.00 44.99 4.35
2866 2962 1.522668 GGCCAAAAATGAAGCCCAAC 58.477 50.000 0.00 0.00 39.60 3.77
2867 2963 1.072173 GGCCAAAAATGAAGCCCAACT 59.928 47.619 0.00 0.00 39.60 3.16
2868 2964 2.487086 GGCCAAAAATGAAGCCCAACTT 60.487 45.455 0.00 0.00 42.98 2.66
2869 2965 2.549329 GCCAAAAATGAAGCCCAACTTG 59.451 45.455 0.00 0.00 39.29 3.16
2870 2966 3.807553 CCAAAAATGAAGCCCAACTTGT 58.192 40.909 0.00 0.00 39.29 3.16
2871 2967 3.560896 CCAAAAATGAAGCCCAACTTGTG 59.439 43.478 0.00 0.00 39.29 3.33
2872 2968 4.190772 CAAAAATGAAGCCCAACTTGTGT 58.809 39.130 0.00 0.00 39.29 3.72
2873 2969 4.486125 AAAATGAAGCCCAACTTGTGTT 57.514 36.364 0.00 0.00 39.29 3.32
2874 2970 5.606348 AAAATGAAGCCCAACTTGTGTTA 57.394 34.783 0.00 0.00 39.29 2.41
2875 2971 5.806654 AAATGAAGCCCAACTTGTGTTAT 57.193 34.783 0.00 0.00 39.29 1.89
2876 2972 4.789012 ATGAAGCCCAACTTGTGTTATG 57.211 40.909 0.00 0.00 39.29 1.90
2877 2973 3.561143 TGAAGCCCAACTTGTGTTATGT 58.439 40.909 0.00 0.00 39.29 2.29
2878 2974 4.720046 TGAAGCCCAACTTGTGTTATGTA 58.280 39.130 0.00 0.00 39.29 2.29
2879 2975 4.517453 TGAAGCCCAACTTGTGTTATGTAC 59.483 41.667 0.00 0.00 39.29 2.90
2880 2976 4.367039 AGCCCAACTTGTGTTATGTACT 57.633 40.909 0.00 0.00 34.60 2.73
2881 2977 5.492855 AGCCCAACTTGTGTTATGTACTA 57.507 39.130 0.00 0.00 34.60 1.82
2882 2978 6.062258 AGCCCAACTTGTGTTATGTACTAT 57.938 37.500 0.00 0.00 34.60 2.12
2883 2979 6.481643 AGCCCAACTTGTGTTATGTACTATT 58.518 36.000 0.00 0.00 34.60 1.73
2884 2980 6.598064 AGCCCAACTTGTGTTATGTACTATTC 59.402 38.462 0.00 0.00 34.60 1.75
2885 2981 6.373216 GCCCAACTTGTGTTATGTACTATTCA 59.627 38.462 0.00 0.00 34.60 2.57
2886 2982 7.414098 GCCCAACTTGTGTTATGTACTATTCAG 60.414 40.741 0.00 0.00 34.60 3.02
2887 2983 7.606456 CCCAACTTGTGTTATGTACTATTCAGT 59.394 37.037 0.00 0.00 35.38 3.41
2888 2984 8.443160 CCAACTTGTGTTATGTACTATTCAGTG 58.557 37.037 0.00 0.00 34.00 3.66
2889 2985 8.988934 CAACTTGTGTTATGTACTATTCAGTGT 58.011 33.333 0.00 0.00 34.00 3.55
2890 2986 8.758633 ACTTGTGTTATGTACTATTCAGTGTC 57.241 34.615 0.00 0.00 36.14 3.67
2891 2987 7.541091 ACTTGTGTTATGTACTATTCAGTGTCG 59.459 37.037 0.00 0.00 36.14 4.35
2892 2988 7.148355 TGTGTTATGTACTATTCAGTGTCGA 57.852 36.000 0.00 0.00 36.14 4.20
2893 2989 7.595604 TGTGTTATGTACTATTCAGTGTCGAA 58.404 34.615 0.00 0.00 36.14 3.71
2894 2990 8.248253 TGTGTTATGTACTATTCAGTGTCGAAT 58.752 33.333 0.00 0.00 39.03 3.34
2895 2991 9.084164 GTGTTATGTACTATTCAGTGTCGAATT 57.916 33.333 0.00 0.00 36.92 2.17
2896 2992 9.647797 TGTTATGTACTATTCAGTGTCGAATTT 57.352 29.630 0.00 0.00 36.92 1.82
2897 2993 9.901724 GTTATGTACTATTCAGTGTCGAATTTG 57.098 33.333 0.00 0.00 36.92 2.32
2898 2994 9.647797 TTATGTACTATTCAGTGTCGAATTTGT 57.352 29.630 0.00 0.00 36.92 2.83
2899 2995 7.956420 TGTACTATTCAGTGTCGAATTTGTT 57.044 32.000 0.00 0.00 36.92 2.83
2900 2996 9.647797 ATGTACTATTCAGTGTCGAATTTGTTA 57.352 29.630 0.00 0.00 36.92 2.41
2901 2997 9.647797 TGTACTATTCAGTGTCGAATTTGTTAT 57.352 29.630 0.00 0.00 36.92 1.89
2929 3025 9.720667 TTTATATCTCGAGCAATGTTTCAAATG 57.279 29.630 7.81 0.00 0.00 2.32
2930 3026 5.633830 ATCTCGAGCAATGTTTCAAATGT 57.366 34.783 7.81 0.00 0.00 2.71
2931 3027 5.437289 TCTCGAGCAATGTTTCAAATGTT 57.563 34.783 7.81 0.00 0.00 2.71
2932 3028 5.214417 TCTCGAGCAATGTTTCAAATGTTG 58.786 37.500 7.81 0.00 0.00 3.33
2933 3029 5.008514 TCTCGAGCAATGTTTCAAATGTTGA 59.991 36.000 7.81 0.00 38.04 3.18
2934 3030 5.771469 TCGAGCAATGTTTCAAATGTTGAT 58.229 33.333 2.58 0.00 39.84 2.57
2935 3031 6.215121 TCGAGCAATGTTTCAAATGTTGATT 58.785 32.000 2.58 0.00 39.84 2.57
2936 3032 6.700960 TCGAGCAATGTTTCAAATGTTGATTT 59.299 30.769 2.58 0.00 39.84 2.17
2937 3033 7.864882 TCGAGCAATGTTTCAAATGTTGATTTA 59.135 29.630 2.58 0.00 39.84 1.40
2938 3034 8.486383 CGAGCAATGTTTCAAATGTTGATTTAA 58.514 29.630 2.58 0.00 39.84 1.52
2964 3060 9.522804 AATTTTTGTAACAACGTACATTGATGT 57.477 25.926 8.94 1.84 44.48 3.06
2965 3061 8.912787 TTTTTGTAACAACGTACATTGATGTT 57.087 26.923 8.94 4.61 41.97 2.71
2971 3067 5.089396 CAACGTACATTGATGTTGTGTCA 57.911 39.130 0.00 0.00 40.15 3.58
2972 3068 5.506181 CAACGTACATTGATGTTGTGTCAA 58.494 37.500 0.00 0.00 40.15 3.18
2973 3069 5.940192 ACGTACATTGATGTTGTGTCAAT 57.060 34.783 1.46 0.00 44.74 2.57
2978 3074 4.859304 ATTGATGTTGTGTCAATGCACT 57.141 36.364 0.00 0.00 42.87 4.40
2979 3075 5.963176 ATTGATGTTGTGTCAATGCACTA 57.037 34.783 0.00 0.20 42.87 2.74
2980 3076 5.361135 TTGATGTTGTGTCAATGCACTAG 57.639 39.130 0.00 0.00 39.89 2.57
2981 3077 4.640364 TGATGTTGTGTCAATGCACTAGA 58.360 39.130 0.00 1.91 39.89 2.43
2982 3078 5.247862 TGATGTTGTGTCAATGCACTAGAT 58.752 37.500 0.00 5.79 39.89 1.98
2983 3079 5.706833 TGATGTTGTGTCAATGCACTAGATT 59.293 36.000 0.00 0.00 39.89 2.40
2984 3080 6.207221 TGATGTTGTGTCAATGCACTAGATTT 59.793 34.615 0.00 0.00 39.89 2.17
2985 3081 6.389830 TGTTGTGTCAATGCACTAGATTTT 57.610 33.333 0.00 0.00 39.89 1.82
2986 3082 6.804677 TGTTGTGTCAATGCACTAGATTTTT 58.195 32.000 0.00 0.00 39.89 1.94
3049 3145 2.702847 GGTGCACCCGATACATTCC 58.297 57.895 26.31 0.00 0.00 3.01
3050 3146 0.818040 GGTGCACCCGATACATTCCC 60.818 60.000 26.31 0.00 0.00 3.97
3051 3147 1.145156 TGCACCCGATACATTCCCG 59.855 57.895 0.00 0.00 0.00 5.14
3052 3148 1.597027 GCACCCGATACATTCCCGG 60.597 63.158 0.00 0.00 42.64 5.73
3053 3149 1.827394 CACCCGATACATTCCCGGT 59.173 57.895 0.00 0.00 41.53 5.28
3054 3150 0.249741 CACCCGATACATTCCCGGTC 60.250 60.000 0.00 0.00 41.53 4.79
3055 3151 1.006571 CCCGATACATTCCCGGTCG 60.007 63.158 0.00 0.23 41.53 4.79
3056 3152 1.457823 CCCGATACATTCCCGGTCGA 61.458 60.000 9.68 0.00 41.53 4.20
3057 3153 0.318445 CCGATACATTCCCGGTCGAC 60.318 60.000 7.13 7.13 38.55 4.20
3058 3154 0.318445 CGATACATTCCCGGTCGACC 60.318 60.000 25.28 25.28 34.46 4.79
3059 3155 0.033090 GATACATTCCCGGTCGACCC 59.967 60.000 28.52 11.28 0.00 4.46
3078 3174 4.798682 ACCCGCCCCGAAGAGGAT 62.799 66.667 0.00 0.00 45.00 3.24
3079 3175 4.241555 CCCGCCCCGAAGAGGATG 62.242 72.222 0.00 0.00 45.00 3.51
3080 3176 4.241555 CCGCCCCGAAGAGGATGG 62.242 72.222 0.00 0.00 45.00 3.51
3081 3177 3.470888 CGCCCCGAAGAGGATGGT 61.471 66.667 0.00 0.00 45.00 3.55
3082 3178 2.506472 GCCCCGAAGAGGATGGTC 59.494 66.667 0.00 0.00 45.00 4.02
3083 3179 2.815308 CCCCGAAGAGGATGGTCG 59.185 66.667 0.00 0.00 45.00 4.79
3084 3180 1.756950 CCCCGAAGAGGATGGTCGA 60.757 63.158 0.00 0.00 45.00 4.20
3085 3181 1.327690 CCCCGAAGAGGATGGTCGAA 61.328 60.000 0.00 0.00 45.00 3.71
3086 3182 0.535335 CCCGAAGAGGATGGTCGAAA 59.465 55.000 0.00 0.00 45.00 3.46
3087 3183 1.139058 CCCGAAGAGGATGGTCGAAAT 59.861 52.381 0.00 0.00 45.00 2.17
3088 3184 2.474816 CCGAAGAGGATGGTCGAAATC 58.525 52.381 0.00 0.00 45.00 2.17
3089 3185 2.101582 CCGAAGAGGATGGTCGAAATCT 59.898 50.000 8.74 0.00 45.00 2.40
3090 3186 3.376540 CGAAGAGGATGGTCGAAATCTC 58.623 50.000 8.74 2.88 36.92 2.75
3091 3187 3.067461 CGAAGAGGATGGTCGAAATCTCT 59.933 47.826 8.74 4.79 36.92 3.10
3092 3188 4.367450 GAAGAGGATGGTCGAAATCTCTG 58.633 47.826 8.74 0.00 0.00 3.35
3093 3189 2.102252 AGAGGATGGTCGAAATCTCTGC 59.898 50.000 8.74 0.00 0.00 4.26
3094 3190 1.202463 AGGATGGTCGAAATCTCTGCG 60.202 52.381 8.74 0.00 0.00 5.18
3095 3191 1.212616 GATGGTCGAAATCTCTGCGG 58.787 55.000 0.00 0.00 0.00 5.69
3096 3192 0.811616 ATGGTCGAAATCTCTGCGGC 60.812 55.000 0.00 0.00 0.00 6.53
3097 3193 2.517450 GGTCGAAATCTCTGCGGCG 61.517 63.158 0.51 0.51 0.00 6.46
3098 3194 1.516386 GTCGAAATCTCTGCGGCGA 60.516 57.895 12.98 0.00 0.00 5.54
3099 3195 1.516386 TCGAAATCTCTGCGGCGAC 60.516 57.895 12.98 2.02 0.00 5.19
3100 3196 2.517450 CGAAATCTCTGCGGCGACC 61.517 63.158 12.98 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.399440 CACCACCGCTGAATTCATGAG 59.601 52.381 8.96 5.28 0.00 2.90
1 2 1.452110 CACCACCGCTGAATTCATGA 58.548 50.000 8.96 0.00 0.00 3.07
2 3 0.179156 GCACCACCGCTGAATTCATG 60.179 55.000 8.96 4.17 0.00 3.07
3 4 1.647545 CGCACCACCGCTGAATTCAT 61.648 55.000 8.96 0.00 0.00 2.57
4 5 2.324330 CGCACCACCGCTGAATTCA 61.324 57.895 8.12 8.12 0.00 2.57
5 6 2.480555 CGCACCACCGCTGAATTC 59.519 61.111 0.00 0.00 0.00 2.17
26 27 2.226674 GCACTCCAGAGTTAAAAGGCAC 59.773 50.000 0.00 0.00 40.20 5.01
31 32 2.143122 CAGCGCACTCCAGAGTTAAAA 58.857 47.619 11.47 0.00 40.20 1.52
99 102 0.037303 CCCGGTAGCGGTAGGATCTA 59.963 60.000 29.86 0.00 0.00 1.98
226 229 2.373169 AGCAGGACAGATTTCAGGACAA 59.627 45.455 0.00 0.00 0.00 3.18
227 230 1.980765 AGCAGGACAGATTTCAGGACA 59.019 47.619 0.00 0.00 0.00 4.02
455 470 1.300620 CACGGAGGCTGACGAAACA 60.301 57.895 14.19 0.00 0.00 2.83
526 564 5.249393 ACATGATCTGTAGGGTCAGAAACTT 59.751 40.000 0.00 0.00 45.65 2.66
548 586 4.312443 GGGACACTTTCGTATCAGAAACA 58.688 43.478 0.00 0.00 35.44 2.83
563 601 2.997897 GGAGGAGCACGGGACACT 60.998 66.667 0.00 0.00 0.00 3.55
576 614 1.750399 CAAATGTGGGCCGAGGAGG 60.750 63.158 0.00 0.00 44.97 4.30
618 657 3.594312 CGTTCACTTCAAGTGTCGAAAC 58.406 45.455 23.11 16.54 46.03 2.78
630 669 0.368227 CTGAGATGCGCGTTCACTTC 59.632 55.000 8.43 0.00 0.00 3.01
631 670 1.016130 CCTGAGATGCGCGTTCACTT 61.016 55.000 8.43 0.00 0.00 3.16
701 741 5.853936 TCGCTTACTTACTTGGCATATGAT 58.146 37.500 6.97 0.00 0.00 2.45
716 756 3.601443 ATGCTTTCTCACTCGCTTACT 57.399 42.857 0.00 0.00 0.00 2.24
771 813 8.360390 TGATATCTCAGATGTACCATGTACAAC 58.640 37.037 10.76 8.53 0.00 3.32
885 937 0.039708 GTCCCGACGACGTTCTTTCT 60.040 55.000 0.13 0.00 37.88 2.52
888 940 0.595825 GTTGTCCCGACGACGTTCTT 60.596 55.000 0.13 0.00 45.23 2.52
889 941 1.008079 GTTGTCCCGACGACGTTCT 60.008 57.895 0.13 0.00 45.23 3.01
898 950 3.598715 ACGAGCGTGTTGTCCCGA 61.599 61.111 0.00 0.00 0.00 5.14
939 991 1.995376 CAGGGCTGGTTTACTTTGGT 58.005 50.000 0.00 0.00 0.00 3.67
949 1001 3.715097 GAGCAGAGCAGGGCTGGT 61.715 66.667 0.00 0.00 45.79 4.00
1296 1354 4.473520 CCCGCAATGGCTCCGTCT 62.474 66.667 0.00 0.00 38.10 4.18
1614 1672 4.056125 CCGACTGTCGCTGCCTCA 62.056 66.667 23.87 0.00 38.82 3.86
1960 2024 2.553247 GGGAGGAAGCTAAACTGCTGTT 60.553 50.000 2.72 2.72 43.24 3.16
1961 2025 1.003696 GGGAGGAAGCTAAACTGCTGT 59.996 52.381 0.00 0.00 43.24 4.40
1962 2026 1.743996 GGGAGGAAGCTAAACTGCTG 58.256 55.000 0.00 0.00 43.24 4.41
1963 2027 0.250513 CGGGAGGAAGCTAAACTGCT 59.749 55.000 0.00 0.00 46.40 4.24
1966 2030 1.218316 CGCGGGAGGAAGCTAAACT 59.782 57.895 0.00 0.00 0.00 2.66
1990 2054 0.385390 AGTTGGCAAAGAACGCAAGG 59.615 50.000 0.00 0.00 46.39 3.61
1994 2058 1.602377 AGTGTAGTTGGCAAAGAACGC 59.398 47.619 0.00 7.37 0.00 4.84
1995 2059 2.602217 GCAGTGTAGTTGGCAAAGAACG 60.602 50.000 0.00 0.00 0.00 3.95
1996 2060 2.618709 AGCAGTGTAGTTGGCAAAGAAC 59.381 45.455 0.00 0.97 0.00 3.01
2002 2066 1.066858 GCTAGAGCAGTGTAGTTGGCA 60.067 52.381 0.00 0.00 41.59 4.92
2003 2067 1.205893 AGCTAGAGCAGTGTAGTTGGC 59.794 52.381 4.01 0.00 45.16 4.52
2005 2069 3.175152 CGAAGCTAGAGCAGTGTAGTTG 58.825 50.000 4.01 0.00 45.16 3.16
2025 2091 0.962855 TCCCAGAGTCACAGAGAGCG 60.963 60.000 0.00 0.00 0.00 5.03
2067 2133 3.386237 AGCTCTCGCCACCTCCAC 61.386 66.667 0.00 0.00 36.60 4.02
2130 2199 1.216122 GTTCGCCATCAGATCTGAGC 58.784 55.000 28.26 24.50 43.61 4.26
2132 2201 1.469767 CGTGTTCGCCATCAGATCTGA 60.470 52.381 27.03 27.03 44.59 3.27
2133 2202 0.926155 CGTGTTCGCCATCAGATCTG 59.074 55.000 17.07 17.07 0.00 2.90
2146 2221 4.481930 TCATTCATTTGGTCACGTGTTC 57.518 40.909 16.51 9.97 0.00 3.18
2189 2266 0.531974 TCATTATTGGCGCGAGGACC 60.532 55.000 12.10 0.65 0.00 4.46
2223 2303 3.086309 CGGCTTGCATTGCATTGC 58.914 55.556 23.33 23.33 38.76 3.56
2224 2304 2.794355 CGCGGCTTGCATTGCATTG 61.794 57.895 12.95 9.71 46.97 2.82
2225 2305 2.507547 CGCGGCTTGCATTGCATT 60.508 55.556 12.95 0.00 46.97 3.56
2229 2309 2.918163 AATACGCGCGGCTTGCATTG 62.918 55.000 35.22 1.83 46.97 2.82
2291 2371 1.942712 CGGATGTAGGCACGTACGC 60.943 63.158 16.72 0.00 40.95 4.42
2293 2373 1.590792 GGCGGATGTAGGCACGTAC 60.591 63.158 0.00 0.00 0.00 3.67
2352 2432 0.103208 GGAGAAGATCGATGTGCCGT 59.897 55.000 0.54 0.00 0.00 5.68
2359 2439 4.944619 TTGCATGTAGGAGAAGATCGAT 57.055 40.909 0.00 0.00 0.00 3.59
2360 2440 4.557496 CGATTGCATGTAGGAGAAGATCGA 60.557 45.833 6.06 0.00 36.82 3.59
2380 2460 2.711922 GGTGCAGAGTCCCGACGAT 61.712 63.158 0.00 0.00 36.20 3.73
2381 2461 3.371063 GGTGCAGAGTCCCGACGA 61.371 66.667 0.00 0.00 36.20 4.20
2383 2463 4.083862 GGGGTGCAGAGTCCCGAC 62.084 72.222 4.14 0.00 44.27 4.79
2386 2466 4.083862 GACGGGGTGCAGAGTCCC 62.084 72.222 1.34 1.34 42.73 4.46
2393 2476 3.857521 AAGGGTAGGACGGGGTGCA 62.858 63.158 0.00 0.00 0.00 4.57
2395 2478 1.611261 TGAAGGGTAGGACGGGGTG 60.611 63.158 0.00 0.00 0.00 4.61
2399 2482 1.305887 AGGGTGAAGGGTAGGACGG 60.306 63.158 0.00 0.00 0.00 4.79
2402 2485 0.033405 CTCGAGGGTGAAGGGTAGGA 60.033 60.000 3.91 0.00 0.00 2.94
2404 2487 1.064611 TCTCTCGAGGGTGAAGGGTAG 60.065 57.143 13.10 0.00 0.00 3.18
2416 2499 0.389166 GCAAGGTGTGGTCTCTCGAG 60.389 60.000 5.93 5.93 0.00 4.04
2422 2505 3.222173 TGTTTATGCAAGGTGTGGTCT 57.778 42.857 0.00 0.00 0.00 3.85
2423 2506 3.857010 GCTTGTTTATGCAAGGTGTGGTC 60.857 47.826 7.75 0.00 44.29 4.02
2424 2507 2.035832 GCTTGTTTATGCAAGGTGTGGT 59.964 45.455 7.75 0.00 44.29 4.16
2425 2508 2.676076 GCTTGTTTATGCAAGGTGTGG 58.324 47.619 7.75 0.00 44.29 4.17
2430 2513 5.321516 GTTACGTAGCTTGTTTATGCAAGG 58.678 41.667 1.72 0.00 44.29 3.61
2431 2514 5.013236 CGTTACGTAGCTTGTTTATGCAAG 58.987 41.667 7.85 1.84 46.21 4.01
2432 2515 4.448395 ACGTTACGTAGCTTGTTTATGCAA 59.552 37.500 9.22 0.00 38.73 4.08
2433 2516 3.989167 ACGTTACGTAGCTTGTTTATGCA 59.011 39.130 9.22 0.00 38.73 3.96
2434 2517 4.320491 CACGTTACGTAGCTTGTTTATGC 58.680 43.478 10.89 0.00 38.32 3.14
2435 2518 4.722908 GCCACGTTACGTAGCTTGTTTATG 60.723 45.833 19.72 0.00 40.85 1.90
2436 2519 3.368843 GCCACGTTACGTAGCTTGTTTAT 59.631 43.478 19.72 0.00 40.85 1.40
2437 2520 2.730928 GCCACGTTACGTAGCTTGTTTA 59.269 45.455 19.72 0.00 40.85 2.01
2438 2521 1.528161 GCCACGTTACGTAGCTTGTTT 59.472 47.619 19.72 0.00 40.85 2.83
2439 2522 1.142474 GCCACGTTACGTAGCTTGTT 58.858 50.000 19.72 0.00 40.85 2.83
2440 2523 1.005294 CGCCACGTTACGTAGCTTGT 61.005 55.000 23.35 0.00 41.74 3.16
2441 2524 0.730155 TCGCCACGTTACGTAGCTTG 60.730 55.000 23.35 11.02 41.74 4.01
2442 2525 0.455633 CTCGCCACGTTACGTAGCTT 60.456 55.000 23.35 0.00 41.74 3.74
2443 2526 1.136147 CTCGCCACGTTACGTAGCT 59.864 57.895 23.35 0.00 41.74 3.32
2444 2527 0.730494 AACTCGCCACGTTACGTAGC 60.730 55.000 17.42 17.42 40.65 3.58
2462 2545 1.545582 CCGTACTGTTAACCCCTCGAA 59.454 52.381 2.48 0.00 0.00 3.71
2470 2553 3.543460 GCGATGCAATCCGTACTGTTAAC 60.543 47.826 0.00 0.00 41.39 2.01
2476 2559 1.290203 CAAGCGATGCAATCCGTACT 58.710 50.000 0.00 0.00 41.39 2.73
2505 2592 1.865788 TTGCGTTCATGGCCTCTTGC 61.866 55.000 3.32 0.92 40.16 4.01
2524 2611 1.555075 TCTAGGAAGCAATGAGGCGTT 59.445 47.619 0.00 0.00 39.27 4.84
2530 2617 3.181479 ACGCGTAATCTAGGAAGCAATGA 60.181 43.478 11.67 0.00 0.00 2.57
2568 2660 1.938125 CACGAACACGTTGCCATCA 59.062 52.632 0.00 0.00 38.21 3.07
2602 2697 4.144703 GGTTCCGGGGTCGAGCTC 62.145 72.222 15.18 9.96 39.00 4.09
2605 2700 1.440476 GTATGGTTCCGGGGTCGAG 59.560 63.158 0.00 0.00 39.00 4.04
2606 2701 2.417257 CGTATGGTTCCGGGGTCGA 61.417 63.158 0.00 0.00 39.00 4.20
2640 2736 0.039708 GATACGTTCCCCGGATCGAC 60.040 60.000 18.55 7.71 46.38 4.20
2641 2737 2.334307 GATACGTTCCCCGGATCGA 58.666 57.895 18.55 0.00 46.38 3.59
2645 2741 1.000739 ACCAGATACGTTCCCCGGA 59.999 57.895 0.73 0.00 42.24 5.14
2649 2745 0.743345 GGTGCACCAGATACGTTCCC 60.743 60.000 31.23 0.00 35.64 3.97
2650 2746 0.036765 TGGTGCACCAGATACGTTCC 60.037 55.000 34.74 4.36 42.01 3.62
2651 2747 3.525619 TGGTGCACCAGATACGTTC 57.474 52.632 34.74 4.89 42.01 3.95
2660 2756 1.747145 CAATTGCCTTGGTGCACCA 59.253 52.632 34.74 34.74 45.94 4.17
2661 2757 4.679412 CAATTGCCTTGGTGCACC 57.321 55.556 29.67 29.67 41.88 5.01
2681 2777 2.109181 GGGTCCGATGCACCTAGC 59.891 66.667 0.00 0.00 45.96 3.42
2682 2778 1.330655 ACAGGGTCCGATGCACCTAG 61.331 60.000 0.00 0.00 33.96 3.02
2683 2779 0.907704 AACAGGGTCCGATGCACCTA 60.908 55.000 0.00 0.00 33.96 3.08
2684 2780 2.224159 AACAGGGTCCGATGCACCT 61.224 57.895 0.00 0.00 33.96 4.00
2685 2781 2.040544 CAACAGGGTCCGATGCACC 61.041 63.158 0.00 0.00 0.00 5.01
2686 2782 2.690778 GCAACAGGGTCCGATGCAC 61.691 63.158 0.00 0.00 37.00 4.57
2687 2783 2.359850 GCAACAGGGTCCGATGCA 60.360 61.111 0.00 0.00 37.00 3.96
2688 2784 2.359850 TGCAACAGGGTCCGATGC 60.360 61.111 7.44 7.44 37.52 3.91
2689 2785 1.302431 TGTGCAACAGGGTCCGATG 60.302 57.895 0.00 0.00 45.67 3.84
2690 2786 3.156714 TGTGCAACAGGGTCCGAT 58.843 55.556 0.00 0.00 45.67 4.18
2744 2840 9.541143 AACATACATTGATATTGTGTCGATACA 57.459 29.630 11.30 11.30 0.00 2.29
2745 2841 9.797473 CAACATACATTGATATTGTGTCGATAC 57.203 33.333 5.21 5.21 0.00 2.24
2746 2842 8.987890 CCAACATACATTGATATTGTGTCGATA 58.012 33.333 0.00 0.00 0.00 2.92
2747 2843 7.520453 GCCAACATACATTGATATTGTGTCGAT 60.520 37.037 0.00 0.00 0.00 3.59
2748 2844 6.238347 GCCAACATACATTGATATTGTGTCGA 60.238 38.462 0.00 0.00 0.00 4.20
2749 2845 5.909054 GCCAACATACATTGATATTGTGTCG 59.091 40.000 0.00 0.00 0.00 4.35
2750 2846 5.909054 CGCCAACATACATTGATATTGTGTC 59.091 40.000 0.00 0.00 0.00 3.67
2751 2847 5.733091 GCGCCAACATACATTGATATTGTGT 60.733 40.000 0.00 0.00 0.00 3.72
2752 2848 4.676471 GCGCCAACATACATTGATATTGTG 59.324 41.667 0.00 0.00 0.00 3.33
2753 2849 4.337836 TGCGCCAACATACATTGATATTGT 59.662 37.500 4.18 0.00 0.00 2.71
2754 2850 4.857799 TGCGCCAACATACATTGATATTG 58.142 39.130 4.18 0.00 0.00 1.90
2755 2851 5.512753 TTGCGCCAACATACATTGATATT 57.487 34.783 4.18 0.00 0.00 1.28
2756 2852 5.512753 TTTGCGCCAACATACATTGATAT 57.487 34.783 4.18 0.00 0.00 1.63
2757 2853 4.972514 TTTGCGCCAACATACATTGATA 57.027 36.364 4.18 0.00 0.00 2.15
2758 2854 3.865011 TTTGCGCCAACATACATTGAT 57.135 38.095 4.18 0.00 0.00 2.57
2759 2855 3.650070 TTTTGCGCCAACATACATTGA 57.350 38.095 4.18 0.00 0.00 2.57
2760 2856 4.925061 ATTTTTGCGCCAACATACATTG 57.075 36.364 4.18 0.00 0.00 2.82
2761 2857 5.938438 AAATTTTTGCGCCAACATACATT 57.062 30.435 4.18 0.00 0.00 2.71
2762 2858 7.426929 TTTAAATTTTTGCGCCAACATACAT 57.573 28.000 4.18 0.00 0.00 2.29
2763 2859 6.844696 TTTAAATTTTTGCGCCAACATACA 57.155 29.167 4.18 0.00 0.00 2.29
2764 2860 7.513968 TGATTTAAATTTTTGCGCCAACATAC 58.486 30.769 4.18 0.00 0.00 2.39
2765 2861 7.658179 TGATTTAAATTTTTGCGCCAACATA 57.342 28.000 4.18 0.00 0.00 2.29
2766 2862 6.551385 TGATTTAAATTTTTGCGCCAACAT 57.449 29.167 4.18 0.00 0.00 2.71
2767 2863 5.991328 TGATTTAAATTTTTGCGCCAACA 57.009 30.435 4.18 0.00 0.00 3.33
2768 2864 7.670894 TTTTGATTTAAATTTTTGCGCCAAC 57.329 28.000 4.18 0.00 0.00 3.77
2769 2865 8.862550 AATTTTGATTTAAATTTTTGCGCCAA 57.137 23.077 4.18 0.00 34.86 4.52
2770 2866 8.131100 TGAATTTTGATTTAAATTTTTGCGCCA 58.869 25.926 4.18 0.00 37.72 5.69
2771 2867 8.499514 TGAATTTTGATTTAAATTTTTGCGCC 57.500 26.923 4.18 0.00 37.72 6.53
2772 2868 9.762600 GTTGAATTTTGATTTAAATTTTTGCGC 57.237 25.926 0.00 0.00 37.72 6.09
2781 2877 9.334947 TGAGCATTGGTTGAATTTTGATTTAAA 57.665 25.926 0.00 0.00 0.00 1.52
2782 2878 8.899427 TGAGCATTGGTTGAATTTTGATTTAA 57.101 26.923 0.00 0.00 0.00 1.52
2783 2879 8.899427 TTGAGCATTGGTTGAATTTTGATTTA 57.101 26.923 0.00 0.00 0.00 1.40
2784 2880 7.716123 TCTTGAGCATTGGTTGAATTTTGATTT 59.284 29.630 0.00 0.00 0.00 2.17
2785 2881 7.218614 TCTTGAGCATTGGTTGAATTTTGATT 58.781 30.769 0.00 0.00 0.00 2.57
2786 2882 6.761312 TCTTGAGCATTGGTTGAATTTTGAT 58.239 32.000 0.00 0.00 0.00 2.57
2787 2883 6.159299 TCTTGAGCATTGGTTGAATTTTGA 57.841 33.333 0.00 0.00 0.00 2.69
2788 2884 7.599621 TGTATCTTGAGCATTGGTTGAATTTTG 59.400 33.333 0.00 0.00 0.00 2.44
2789 2885 7.669427 TGTATCTTGAGCATTGGTTGAATTTT 58.331 30.769 0.00 0.00 0.00 1.82
2790 2886 7.230849 TGTATCTTGAGCATTGGTTGAATTT 57.769 32.000 0.00 0.00 0.00 1.82
2791 2887 6.839124 TGTATCTTGAGCATTGGTTGAATT 57.161 33.333 0.00 0.00 0.00 2.17
2792 2888 6.839124 TTGTATCTTGAGCATTGGTTGAAT 57.161 33.333 0.00 0.00 0.00 2.57
2793 2889 6.647334 TTTGTATCTTGAGCATTGGTTGAA 57.353 33.333 0.00 0.00 0.00 2.69
2794 2890 6.647334 TTTTGTATCTTGAGCATTGGTTGA 57.353 33.333 0.00 0.00 0.00 3.18
2795 2891 7.599621 TCATTTTTGTATCTTGAGCATTGGTTG 59.400 33.333 0.00 0.00 0.00 3.77
2796 2892 7.599998 GTCATTTTTGTATCTTGAGCATTGGTT 59.400 33.333 0.00 0.00 0.00 3.67
2797 2893 7.092716 GTCATTTTTGTATCTTGAGCATTGGT 58.907 34.615 0.00 0.00 0.00 3.67
2798 2894 7.092079 TGTCATTTTTGTATCTTGAGCATTGG 58.908 34.615 0.00 0.00 0.00 3.16
2799 2895 8.523523 TTGTCATTTTTGTATCTTGAGCATTG 57.476 30.769 0.00 0.00 0.00 2.82
2800 2896 9.715121 ATTTGTCATTTTTGTATCTTGAGCATT 57.285 25.926 0.00 0.00 0.00 3.56
2801 2897 9.715121 AATTTGTCATTTTTGTATCTTGAGCAT 57.285 25.926 0.00 0.00 0.00 3.79
2802 2898 9.545105 AAATTTGTCATTTTTGTATCTTGAGCA 57.455 25.926 0.00 0.00 0.00 4.26
2816 2912 9.777297 AGCACATTAAGGTTAAATTTGTCATTT 57.223 25.926 0.00 0.00 0.00 2.32
2821 2917 9.651913 CCATTAGCACATTAAGGTTAAATTTGT 57.348 29.630 0.00 0.00 0.00 2.83
2822 2918 9.097257 CCCATTAGCACATTAAGGTTAAATTTG 57.903 33.333 0.00 0.00 0.00 2.32
2823 2919 7.768582 GCCCATTAGCACATTAAGGTTAAATTT 59.231 33.333 0.00 0.00 0.00 1.82
2824 2920 7.272244 GCCCATTAGCACATTAAGGTTAAATT 58.728 34.615 0.00 0.00 0.00 1.82
2825 2921 6.183360 GGCCCATTAGCACATTAAGGTTAAAT 60.183 38.462 0.00 0.00 0.00 1.40
2826 2922 5.128008 GGCCCATTAGCACATTAAGGTTAAA 59.872 40.000 0.00 0.00 0.00 1.52
2827 2923 4.647399 GGCCCATTAGCACATTAAGGTTAA 59.353 41.667 0.00 0.00 0.00 2.01
2828 2924 4.211920 GGCCCATTAGCACATTAAGGTTA 58.788 43.478 0.00 0.00 0.00 2.85
2829 2925 3.031013 GGCCCATTAGCACATTAAGGTT 58.969 45.455 0.00 0.00 0.00 3.50
2830 2926 2.024464 TGGCCCATTAGCACATTAAGGT 60.024 45.455 0.00 0.00 0.00 3.50
2831 2927 2.665165 TGGCCCATTAGCACATTAAGG 58.335 47.619 0.00 0.00 0.00 2.69
2832 2928 4.734398 TTTGGCCCATTAGCACATTAAG 57.266 40.909 0.00 0.00 0.00 1.85
2833 2929 5.489792 TTTTTGGCCCATTAGCACATTAA 57.510 34.783 0.00 0.00 0.00 1.40
2834 2930 5.188555 TCATTTTTGGCCCATTAGCACATTA 59.811 36.000 0.00 0.00 0.00 1.90
2835 2931 4.019501 TCATTTTTGGCCCATTAGCACATT 60.020 37.500 0.00 0.00 0.00 2.71
2836 2932 3.518705 TCATTTTTGGCCCATTAGCACAT 59.481 39.130 0.00 0.00 0.00 3.21
2837 2933 2.902486 TCATTTTTGGCCCATTAGCACA 59.098 40.909 0.00 0.00 0.00 4.57
2838 2934 3.608316 TCATTTTTGGCCCATTAGCAC 57.392 42.857 0.00 0.00 0.00 4.40
2839 2935 3.619487 GCTTCATTTTTGGCCCATTAGCA 60.619 43.478 0.00 0.00 0.00 3.49
2840 2936 2.938451 GCTTCATTTTTGGCCCATTAGC 59.062 45.455 0.00 0.00 0.00 3.09
2841 2937 3.534554 GGCTTCATTTTTGGCCCATTAG 58.465 45.455 0.00 0.00 38.77 1.73
2842 2938 3.625649 GGCTTCATTTTTGGCCCATTA 57.374 42.857 0.00 0.00 38.77 1.90
2843 2939 2.495155 GGCTTCATTTTTGGCCCATT 57.505 45.000 0.00 0.00 38.77 3.16
2847 2943 1.072173 AGTTGGGCTTCATTTTTGGCC 59.928 47.619 0.00 0.00 45.24 5.36
2848 2944 2.549064 AGTTGGGCTTCATTTTTGGC 57.451 45.000 0.00 0.00 0.00 4.52
2849 2945 3.560896 CACAAGTTGGGCTTCATTTTTGG 59.439 43.478 7.96 0.00 34.69 3.28
2850 2946 4.190772 ACACAAGTTGGGCTTCATTTTTG 58.809 39.130 4.63 0.00 34.69 2.44
2851 2947 4.486125 ACACAAGTTGGGCTTCATTTTT 57.514 36.364 4.63 0.00 34.69 1.94
2852 2948 4.486125 AACACAAGTTGGGCTTCATTTT 57.514 36.364 4.63 0.00 36.39 1.82
2853 2949 5.070313 ACATAACACAAGTTGGGCTTCATTT 59.930 36.000 4.63 0.00 38.69 2.32
2854 2950 4.588528 ACATAACACAAGTTGGGCTTCATT 59.411 37.500 4.63 0.00 38.69 2.57
2855 2951 4.151883 ACATAACACAAGTTGGGCTTCAT 58.848 39.130 4.63 0.00 38.69 2.57
2856 2952 3.561143 ACATAACACAAGTTGGGCTTCA 58.439 40.909 4.63 0.00 38.69 3.02
2857 2953 4.760204 AGTACATAACACAAGTTGGGCTTC 59.240 41.667 4.63 0.00 38.69 3.86
2858 2954 4.725490 AGTACATAACACAAGTTGGGCTT 58.275 39.130 4.63 1.74 38.69 4.35
2859 2955 4.367039 AGTACATAACACAAGTTGGGCT 57.633 40.909 4.63 0.00 38.69 5.19
2860 2956 6.373216 TGAATAGTACATAACACAAGTTGGGC 59.627 38.462 4.63 0.00 38.69 5.36
2861 2957 7.606456 ACTGAATAGTACATAACACAAGTTGGG 59.394 37.037 2.79 2.79 35.32 4.12
2862 2958 8.443160 CACTGAATAGTACATAACACAAGTTGG 58.557 37.037 7.96 0.00 35.32 3.77
2863 2959 8.988934 ACACTGAATAGTACATAACACAAGTTG 58.011 33.333 0.00 0.00 35.32 3.16
2864 2960 9.204570 GACACTGAATAGTACATAACACAAGTT 57.795 33.333 0.00 0.00 37.27 2.66
2865 2961 7.541091 CGACACTGAATAGTACATAACACAAGT 59.459 37.037 0.00 0.00 34.74 3.16
2866 2962 7.753580 TCGACACTGAATAGTACATAACACAAG 59.246 37.037 0.00 0.00 34.74 3.16
2867 2963 7.595604 TCGACACTGAATAGTACATAACACAA 58.404 34.615 0.00 0.00 34.74 3.33
2868 2964 7.148355 TCGACACTGAATAGTACATAACACA 57.852 36.000 0.00 0.00 34.74 3.72
2869 2965 8.630278 ATTCGACACTGAATAGTACATAACAC 57.370 34.615 0.00 0.00 36.83 3.32
2870 2966 9.647797 AAATTCGACACTGAATAGTACATAACA 57.352 29.630 0.00 0.00 37.59 2.41
2871 2967 9.901724 CAAATTCGACACTGAATAGTACATAAC 57.098 33.333 0.00 0.00 37.59 1.89
2872 2968 9.647797 ACAAATTCGACACTGAATAGTACATAA 57.352 29.630 0.00 0.00 37.59 1.90
2873 2969 9.647797 AACAAATTCGACACTGAATAGTACATA 57.352 29.630 0.00 0.00 37.59 2.29
2874 2970 8.547967 AACAAATTCGACACTGAATAGTACAT 57.452 30.769 0.00 0.00 37.59 2.29
2875 2971 7.956420 AACAAATTCGACACTGAATAGTACA 57.044 32.000 0.00 0.00 37.59 2.90
2903 2999 9.720667 CATTTGAAACATTGCTCGAGATATAAA 57.279 29.630 18.75 5.72 0.00 1.40
2904 3000 8.892723 ACATTTGAAACATTGCTCGAGATATAA 58.107 29.630 18.75 5.47 0.00 0.98
2905 3001 8.437360 ACATTTGAAACATTGCTCGAGATATA 57.563 30.769 18.75 0.00 0.00 0.86
2906 3002 7.325660 ACATTTGAAACATTGCTCGAGATAT 57.674 32.000 18.75 5.17 0.00 1.63
2907 3003 6.741992 ACATTTGAAACATTGCTCGAGATA 57.258 33.333 18.75 2.54 0.00 1.98
2908 3004 5.633830 ACATTTGAAACATTGCTCGAGAT 57.366 34.783 18.75 0.00 0.00 2.75
2909 3005 5.008514 TCAACATTTGAAACATTGCTCGAGA 59.991 36.000 18.75 0.00 36.59 4.04
2910 3006 5.214417 TCAACATTTGAAACATTGCTCGAG 58.786 37.500 8.45 8.45 36.59 4.04
2911 3007 5.180367 TCAACATTTGAAACATTGCTCGA 57.820 34.783 0.00 0.00 36.59 4.04
2912 3008 6.456447 AATCAACATTTGAAACATTGCTCG 57.544 33.333 0.00 0.00 43.95 5.03
2938 3034 9.522804 ACATCAATGTACGTTGTTACAAAAATT 57.477 25.926 23.68 0.00 39.68 1.82
2939 3035 9.522804 AACATCAATGTACGTTGTTACAAAAAT 57.477 25.926 23.68 7.85 40.80 1.82
2940 3036 8.799091 CAACATCAATGTACGTTGTTACAAAAA 58.201 29.630 23.68 5.97 40.80 1.94
2941 3037 8.329066 CAACATCAATGTACGTTGTTACAAAA 57.671 30.769 23.68 6.64 40.80 2.44
2942 3038 7.900299 CAACATCAATGTACGTTGTTACAAA 57.100 32.000 23.68 7.29 40.80 2.83
2949 3045 5.089396 TGACACAACATCAATGTACGTTG 57.911 39.130 19.82 19.82 40.80 4.10
2950 3046 5.743026 TTGACACAACATCAATGTACGTT 57.257 34.783 0.00 0.00 40.80 3.99
2951 3047 5.940192 ATTGACACAACATCAATGTACGT 57.060 34.783 0.00 0.00 43.54 3.57
2957 3053 4.859304 AGTGCATTGACACAACATCAAT 57.141 36.364 11.85 0.00 45.57 2.57
2958 3054 5.062528 TCTAGTGCATTGACACAACATCAA 58.937 37.500 11.85 0.00 43.23 2.57
2959 3055 4.640364 TCTAGTGCATTGACACAACATCA 58.360 39.130 11.85 0.00 43.23 3.07
2960 3056 5.808042 ATCTAGTGCATTGACACAACATC 57.192 39.130 11.85 0.00 43.23 3.06
2961 3057 6.579666 AAATCTAGTGCATTGACACAACAT 57.420 33.333 11.85 1.09 43.23 2.71
2962 3058 6.389830 AAAATCTAGTGCATTGACACAACA 57.610 33.333 11.85 0.00 43.23 3.33
3008 3104 1.337071 TCGCCCGTTGCACATTAAAAA 59.663 42.857 0.00 0.00 41.33 1.94
3009 3105 0.952280 TCGCCCGTTGCACATTAAAA 59.048 45.000 0.00 0.00 41.33 1.52
3010 3106 0.238817 GTCGCCCGTTGCACATTAAA 59.761 50.000 0.00 0.00 41.33 1.52
3011 3107 1.579084 GGTCGCCCGTTGCACATTAA 61.579 55.000 0.00 0.00 41.33 1.40
3012 3108 2.036006 GGTCGCCCGTTGCACATTA 61.036 57.895 0.00 0.00 41.33 1.90
3013 3109 3.361977 GGTCGCCCGTTGCACATT 61.362 61.111 0.00 0.00 41.33 2.71
3031 3127 0.818040 GGGAATGTATCGGGTGCACC 60.818 60.000 28.57 28.57 0.00 5.01
3032 3128 1.157870 CGGGAATGTATCGGGTGCAC 61.158 60.000 8.80 8.80 0.00 4.57
3033 3129 1.145156 CGGGAATGTATCGGGTGCA 59.855 57.895 0.00 0.00 0.00 4.57
3034 3130 1.597027 CCGGGAATGTATCGGGTGC 60.597 63.158 0.00 0.00 40.07 5.01
3035 3131 4.771127 CCGGGAATGTATCGGGTG 57.229 61.111 0.00 0.00 40.07 4.61
3039 3135 0.318445 GGTCGACCGGGAATGTATCG 60.318 60.000 20.85 3.88 0.00 2.92
3040 3136 0.033090 GGGTCGACCGGGAATGTATC 59.967 60.000 27.68 6.46 36.71 2.24
3041 3137 2.130512 GGGTCGACCGGGAATGTAT 58.869 57.895 27.68 0.00 36.71 2.29
3042 3138 3.619938 GGGTCGACCGGGAATGTA 58.380 61.111 27.68 0.00 36.71 2.29
3061 3157 4.798682 ATCCTCTTCGGGGCGGGT 62.799 66.667 0.00 0.00 0.00 5.28
3062 3158 4.241555 CATCCTCTTCGGGGCGGG 62.242 72.222 0.00 0.00 0.00 6.13
3063 3159 4.241555 CCATCCTCTTCGGGGCGG 62.242 72.222 0.00 0.00 0.00 6.13
3064 3160 3.447025 GACCATCCTCTTCGGGGCG 62.447 68.421 0.00 0.00 0.00 6.13
3065 3161 2.506472 GACCATCCTCTTCGGGGC 59.494 66.667 0.00 0.00 0.00 5.80
3066 3162 1.327690 TTCGACCATCCTCTTCGGGG 61.328 60.000 0.00 0.00 33.50 5.73
3067 3163 0.535335 TTTCGACCATCCTCTTCGGG 59.465 55.000 0.00 0.00 33.50 5.14
3068 3164 2.101582 AGATTTCGACCATCCTCTTCGG 59.898 50.000 0.00 0.00 33.50 4.30
3069 3165 3.067461 AGAGATTTCGACCATCCTCTTCG 59.933 47.826 0.00 0.00 0.00 3.79
3070 3166 4.367450 CAGAGATTTCGACCATCCTCTTC 58.633 47.826 0.00 0.00 0.00 2.87
3071 3167 3.431486 GCAGAGATTTCGACCATCCTCTT 60.431 47.826 0.00 0.00 0.00 2.85
3072 3168 2.102252 GCAGAGATTTCGACCATCCTCT 59.898 50.000 0.00 0.00 0.00 3.69
3073 3169 2.478831 GCAGAGATTTCGACCATCCTC 58.521 52.381 0.00 0.00 0.00 3.71
3074 3170 1.202463 CGCAGAGATTTCGACCATCCT 60.202 52.381 0.00 0.00 0.00 3.24
3075 3171 1.212616 CGCAGAGATTTCGACCATCC 58.787 55.000 0.00 0.00 0.00 3.51
3076 3172 1.212616 CCGCAGAGATTTCGACCATC 58.787 55.000 0.00 0.00 0.00 3.51
3077 3173 0.811616 GCCGCAGAGATTTCGACCAT 60.812 55.000 0.00 0.00 0.00 3.55
3078 3174 1.447838 GCCGCAGAGATTTCGACCA 60.448 57.895 0.00 0.00 0.00 4.02
3079 3175 2.517450 CGCCGCAGAGATTTCGACC 61.517 63.158 0.00 0.00 0.00 4.79
3080 3176 1.516386 TCGCCGCAGAGATTTCGAC 60.516 57.895 0.00 0.00 0.00 4.20
3081 3177 1.516386 GTCGCCGCAGAGATTTCGA 60.516 57.895 0.00 0.00 0.00 3.71
3082 3178 2.517450 GGTCGCCGCAGAGATTTCG 61.517 63.158 0.00 0.00 0.00 3.46
3083 3179 2.517450 CGGTCGCCGCAGAGATTTC 61.517 63.158 5.38 0.00 41.17 2.17
3084 3180 2.509336 CGGTCGCCGCAGAGATTT 60.509 61.111 5.38 0.00 41.17 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.