Multiple sequence alignment - TraesCS2B01G410400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G410400 chr2B 100.000 5889 0 0 1 5889 583792861 583786973 0.000000e+00 10876.0
1 TraesCS2B01G410400 chr2B 82.692 780 125 9 5081 5857 211012891 211013663 0.000000e+00 684.0
2 TraesCS2B01G410400 chr2B 83.911 404 65 0 5486 5889 776762434 776762837 2.570000e-103 387.0
3 TraesCS2B01G410400 chr2B 82.550 447 68 3 5145 5582 672527446 672527891 9.260000e-103 385.0
4 TraesCS2B01G410400 chr2B 81.900 221 32 6 4256 4471 508959387 508959604 4.690000e-41 180.0
5 TraesCS2B01G410400 chr2B 77.778 126 23 5 215 336 5700596 5700720 8.190000e-09 73.1
6 TraesCS2B01G410400 chr2A 88.707 3781 247 76 575 4257 642228555 642224857 0.000000e+00 4451.0
7 TraesCS2B01G410400 chr2A 88.283 990 70 20 4239 5190 642224848 642223867 0.000000e+00 1144.0
8 TraesCS2B01G410400 chr2A 87.989 716 79 5 5180 5889 642221777 642221063 0.000000e+00 839.0
9 TraesCS2B01G410400 chr2A 83.977 699 94 11 5153 5847 148021495 148020811 0.000000e+00 654.0
10 TraesCS2B01G410400 chr2D 89.710 1895 137 26 31 1881 497927282 497925402 0.000000e+00 2366.0
11 TraesCS2B01G410400 chr2D 87.896 1578 115 31 3356 4898 497923903 497922367 0.000000e+00 1786.0
12 TraesCS2B01G410400 chr2D 87.429 1408 111 29 1866 3227 497925380 497923993 0.000000e+00 1559.0
13 TraesCS2B01G410400 chr2D 88.050 1046 101 7 4846 5887 497922371 497921346 0.000000e+00 1218.0
14 TraesCS2B01G410400 chr2D 83.578 408 64 3 5127 5533 326855515 326855110 4.310000e-101 379.0
15 TraesCS2B01G410400 chr2D 80.269 223 34 9 4256 4471 139025724 139025505 6.110000e-35 159.0
16 TraesCS2B01G410400 chr4D 82.603 753 114 11 5085 5829 245113990 245114733 0.000000e+00 649.0
17 TraesCS2B01G410400 chr4D 77.733 494 95 11 5398 5887 435662199 435662681 7.470000e-74 289.0
18 TraesCS2B01G410400 chr1A 82.769 650 99 12 5246 5889 329525070 329524428 8.560000e-158 568.0
19 TraesCS2B01G410400 chr1A 85.096 208 27 4 5144 5349 40918194 40918399 5.980000e-50 209.0
20 TraesCS2B01G410400 chr1A 82.474 97 14 3 3231 3326 91479082 91478988 1.360000e-11 82.4
21 TraesCS2B01G410400 chr1D 78.091 639 129 7 5254 5889 196098955 196099585 1.540000e-105 394.0
22 TraesCS2B01G410400 chr1D 86.290 248 30 4 5147 5392 41304809 41304564 3.500000e-67 267.0
23 TraesCS2B01G410400 chr7D 76.963 764 129 23 5082 5816 368815005 368815750 5.530000e-105 392.0
24 TraesCS2B01G410400 chr6B 78.435 626 105 9 5126 5725 450642725 450642104 1.200000e-101 381.0
25 TraesCS2B01G410400 chr6B 93.496 123 8 0 4710 4832 508941865 508941987 3.620000e-42 183.0
26 TraesCS2B01G410400 chr5A 78.409 616 90 19 5083 5669 594724317 594724918 1.560000e-95 361.0
27 TraesCS2B01G410400 chr5A 100.000 29 0 0 3278 3306 554178648 554178620 3.000000e-03 54.7
28 TraesCS2B01G410400 chr3D 79.354 557 79 21 5085 5611 121390845 121390295 5.610000e-95 359.0
29 TraesCS2B01G410400 chr3D 81.522 184 29 5 4256 4435 400694389 400694571 4.760000e-31 147.0
30 TraesCS2B01G410400 chr3D 78.000 150 29 4 1913 2060 122581258 122581111 2.260000e-14 91.6
31 TraesCS2B01G410400 chr1B 78.834 463 94 3 5430 5889 603102517 603102056 5.730000e-80 309.0
32 TraesCS2B01G410400 chr1B 83.333 102 11 3 4258 4353 245959013 245958912 8.130000e-14 89.8
33 TraesCS2B01G410400 chr1B 82.692 104 12 5 4260 4357 313450840 313450737 2.920000e-13 87.9
34 TraesCS2B01G410400 chr6D 91.667 132 11 0 4710 4841 315957408 315957277 3.620000e-42 183.0
35 TraesCS2B01G410400 chr6A 92.248 129 10 0 4710 4838 453825093 453824965 3.620000e-42 183.0
36 TraesCS2B01G410400 chr6A 79.845 129 21 4 4286 4411 445773021 445772895 8.130000e-14 89.8
37 TraesCS2B01G410400 chr3B 81.068 206 32 5 4256 4454 526293480 526293685 2.200000e-34 158.0
38 TraesCS2B01G410400 chr7B 78.125 160 26 5 4314 4471 659419855 659419703 6.280000e-15 93.5
39 TraesCS2B01G410400 chr5B 81.651 109 18 2 4318 4425 317057934 317057827 8.130000e-14 89.8
40 TraesCS2B01G410400 chr5D 100.000 29 0 0 3278 3306 438468387 438468359 3.000000e-03 54.7
41 TraesCS2B01G410400 chr5D 100.000 29 0 0 3278 3306 438565314 438565286 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G410400 chr2B 583786973 583792861 5888 True 10876.000000 10876 100.000000 1 5889 1 chr2B.!!$R1 5888
1 TraesCS2B01G410400 chr2B 211012891 211013663 772 False 684.000000 684 82.692000 5081 5857 1 chr2B.!!$F2 776
2 TraesCS2B01G410400 chr2A 642221063 642228555 7492 True 2144.666667 4451 88.326333 575 5889 3 chr2A.!!$R2 5314
3 TraesCS2B01G410400 chr2A 148020811 148021495 684 True 654.000000 654 83.977000 5153 5847 1 chr2A.!!$R1 694
4 TraesCS2B01G410400 chr2D 497921346 497927282 5936 True 1732.250000 2366 88.271250 31 5887 4 chr2D.!!$R3 5856
5 TraesCS2B01G410400 chr4D 245113990 245114733 743 False 649.000000 649 82.603000 5085 5829 1 chr4D.!!$F1 744
6 TraesCS2B01G410400 chr1A 329524428 329525070 642 True 568.000000 568 82.769000 5246 5889 1 chr1A.!!$R2 643
7 TraesCS2B01G410400 chr1D 196098955 196099585 630 False 394.000000 394 78.091000 5254 5889 1 chr1D.!!$F1 635
8 TraesCS2B01G410400 chr7D 368815005 368815750 745 False 392.000000 392 76.963000 5082 5816 1 chr7D.!!$F1 734
9 TraesCS2B01G410400 chr6B 450642104 450642725 621 True 381.000000 381 78.435000 5126 5725 1 chr6B.!!$R1 599
10 TraesCS2B01G410400 chr5A 594724317 594724918 601 False 361.000000 361 78.409000 5083 5669 1 chr5A.!!$F1 586
11 TraesCS2B01G410400 chr3D 121390295 121390845 550 True 359.000000 359 79.354000 5085 5611 1 chr3D.!!$R1 526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
434 440 0.030101 CCGTCGAGATGAAGAGGCTC 59.970 60.0 6.34 6.34 0.00 4.70 F
916 941 0.109723 CCTACCCCTCTCTCTCTCCG 59.890 65.0 0.00 0.00 0.00 4.63 F
2467 2597 0.095935 CGTCAATCTGAAGCTTGGCG 59.904 55.0 2.10 6.52 41.61 5.69 F
3244 3439 0.242286 TTGTGTGTGTGTGTTGGTGC 59.758 50.0 0.00 0.00 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1480 1519 0.458669 ACGCCCAATCGTCGATACTT 59.541 50.0 8.43 0.00 38.44 2.24 R
2504 2634 0.249155 CAAGCAAAGCACCACCACAG 60.249 55.0 0.00 0.00 0.00 3.66 R
3747 3947 0.248458 GGGACAACACGTGTTTGCTG 60.248 55.0 30.49 22.07 41.96 4.41 R
5106 5429 0.966179 GTTTGAGGGGGCGAATTGTT 59.034 50.0 0.00 0.00 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.768834 GCCTCTTCACCGTTGGATC 58.231 57.895 0.00 0.00 0.00 3.36
19 20 0.744771 GCCTCTTCACCGTTGGATCC 60.745 60.000 4.20 4.20 0.00 3.36
20 21 0.613260 CCTCTTCACCGTTGGATCCA 59.387 55.000 11.44 11.44 0.00 3.41
21 22 1.676014 CCTCTTCACCGTTGGATCCAC 60.676 57.143 15.91 9.07 0.00 4.02
22 23 1.001974 CTCTTCACCGTTGGATCCACA 59.998 52.381 15.91 2.99 0.00 4.17
23 24 1.628340 TCTTCACCGTTGGATCCACAT 59.372 47.619 15.91 0.00 0.00 3.21
24 25 2.835156 TCTTCACCGTTGGATCCACATA 59.165 45.455 15.91 0.00 0.00 2.29
25 26 2.979814 TCACCGTTGGATCCACATAG 57.020 50.000 15.91 6.32 0.00 2.23
26 27 2.462723 TCACCGTTGGATCCACATAGA 58.537 47.619 15.91 6.47 0.00 1.98
27 28 2.167693 TCACCGTTGGATCCACATAGAC 59.832 50.000 15.91 8.81 0.00 2.59
28 29 2.093711 CACCGTTGGATCCACATAGACA 60.094 50.000 15.91 0.00 0.00 3.41
29 30 2.569853 ACCGTTGGATCCACATAGACAA 59.430 45.455 15.91 0.00 0.00 3.18
48 49 7.181143 AGACAATGAACACATTTTGAATTGC 57.819 32.000 0.00 0.00 32.76 3.56
51 52 5.600908 ATGAACACATTTTGAATTGCAGC 57.399 34.783 0.00 0.00 0.00 5.25
69 70 1.755959 AGCACATGCACAACCTCAAAA 59.244 42.857 6.64 0.00 45.16 2.44
80 81 3.891366 ACAACCTCAAAACTCCCTCAATG 59.109 43.478 0.00 0.00 0.00 2.82
86 87 4.739793 TCAAAACTCCCTCAATGGATTGT 58.260 39.130 0.00 0.00 38.84 2.71
91 92 3.220110 CTCCCTCAATGGATTGTGATGG 58.780 50.000 3.53 0.00 38.84 3.51
95 96 3.623703 CTCAATGGATTGTGATGGACCA 58.376 45.455 0.00 0.00 38.84 4.02
99 100 0.035439 GGATTGTGATGGACCACCGT 60.035 55.000 0.00 0.00 39.42 4.83
108 109 3.050275 GACCACCGTTGCTGCCTC 61.050 66.667 0.00 0.00 0.00 4.70
110 111 2.281761 CCACCGTTGCTGCCTCTT 60.282 61.111 0.00 0.00 0.00 2.85
118 119 0.737367 TTGCTGCCTCTTCATCGTCG 60.737 55.000 0.00 0.00 0.00 5.12
119 120 1.139734 GCTGCCTCTTCATCGTCGA 59.860 57.895 0.00 0.00 0.00 4.20
123 124 0.458543 GCCTCTTCATCGTCGAAGCA 60.459 55.000 0.00 0.00 41.84 3.91
138 139 2.220824 CGAAGCAAGTCGTTGTTGATCA 59.779 45.455 0.00 0.00 35.92 2.92
145 146 3.273434 AGTCGTTGTTGATCATGGATGG 58.727 45.455 0.00 0.00 0.00 3.51
146 147 2.355756 GTCGTTGTTGATCATGGATGGG 59.644 50.000 0.00 0.00 0.00 4.00
148 149 3.016031 CGTTGTTGATCATGGATGGGAA 58.984 45.455 0.00 0.00 0.00 3.97
149 150 3.065786 CGTTGTTGATCATGGATGGGAAG 59.934 47.826 0.00 0.00 0.00 3.46
156 159 2.780414 TCATGGATGGGAAGTCCTCAT 58.220 47.619 0.00 0.00 36.68 2.90
157 160 3.940335 TCATGGATGGGAAGTCCTCATA 58.060 45.455 0.00 0.00 36.68 2.15
162 165 1.204146 TGGGAAGTCCTCATAGCCAC 58.796 55.000 0.00 0.00 36.20 5.01
167 170 1.043673 AGTCCTCATAGCCACGGTCC 61.044 60.000 0.00 0.00 0.00 4.46
171 174 0.674534 CTCATAGCCACGGTCCTACC 59.325 60.000 0.00 0.00 34.05 3.18
172 175 0.757935 TCATAGCCACGGTCCTACCC 60.758 60.000 0.00 0.00 33.75 3.69
178 181 1.295423 CACGGTCCTACCCAACCAG 59.705 63.158 0.00 0.00 33.75 4.00
180 183 2.589157 CGGTCCTACCCAACCAGCA 61.589 63.158 0.00 0.00 33.75 4.41
189 192 1.604378 CCAACCAGCACCCTAGAGG 59.396 63.158 0.00 0.00 43.78 3.69
191 194 0.984230 CAACCAGCACCCTAGAGGAA 59.016 55.000 0.00 0.00 39.89 3.36
195 198 2.649816 ACCAGCACCCTAGAGGAAAAAT 59.350 45.455 0.00 0.00 39.89 1.82
197 200 3.445096 CCAGCACCCTAGAGGAAAAATTG 59.555 47.826 0.00 0.00 39.89 2.32
206 209 6.348540 CCCTAGAGGAAAAATTGTTGAAGTCG 60.349 42.308 0.00 0.00 38.24 4.18
209 215 5.588648 AGAGGAAAAATTGTTGAAGTCGTCA 59.411 36.000 0.00 0.00 0.00 4.35
216 222 2.821546 TGTTGAAGTCGTCACAGGAAG 58.178 47.619 0.00 0.00 35.39 3.46
219 225 3.577649 TGAAGTCGTCACAGGAAGATC 57.422 47.619 0.00 0.00 34.08 2.75
246 252 1.354368 TCCAAGATCCCAACCTCCAAC 59.646 52.381 0.00 0.00 0.00 3.77
255 261 1.338020 CCAACCTCCAACAAAGCTCAC 59.662 52.381 0.00 0.00 0.00 3.51
283 289 1.153168 GCTGCACCGGTGGTCATAT 60.153 57.895 34.58 0.00 31.02 1.78
287 293 1.211703 TGCACCGGTGGTCATATCAAT 59.788 47.619 34.58 0.00 31.02 2.57
293 299 2.539688 CGGTGGTCATATCAATGTGACG 59.460 50.000 12.03 0.19 46.07 4.35
303 309 0.898320 CAATGTGACGGAGAGGAGGT 59.102 55.000 0.00 0.00 0.00 3.85
328 334 2.031870 GACCAAACTGCAAAGGGAAGT 58.968 47.619 0.00 0.00 0.00 3.01
330 336 1.001378 CCAAACTGCAAAGGGAAGTCG 60.001 52.381 0.00 0.00 0.00 4.18
339 345 2.126580 GGGAAGTCGTCGTCACCG 60.127 66.667 0.00 0.00 0.00 4.94
345 351 1.081641 GTCGTCGTCACCGTCACAT 60.082 57.895 0.00 0.00 35.01 3.21
362 368 5.239963 CGTCACATTAACAAACCCTAACCTT 59.760 40.000 0.00 0.00 0.00 3.50
365 371 5.010617 CACATTAACAAACCCTAACCTTGCT 59.989 40.000 0.00 0.00 0.00 3.91
368 374 6.638096 TTAACAAACCCTAACCTTGCTAAC 57.362 37.500 0.00 0.00 0.00 2.34
369 375 3.143728 ACAAACCCTAACCTTGCTAACG 58.856 45.455 0.00 0.00 0.00 3.18
390 396 2.484889 GATAGACCGGCAGGAATTCAC 58.515 52.381 10.86 0.00 41.02 3.18
396 402 1.729881 GGCAGGAATTCACGCCATC 59.270 57.895 24.89 5.30 44.25 3.51
399 405 1.368641 CAGGAATTCACGCCATCGAA 58.631 50.000 7.93 0.00 39.41 3.71
401 407 2.355756 CAGGAATTCACGCCATCGAATT 59.644 45.455 7.93 0.00 42.92 2.17
408 414 1.063006 CGCCATCGAATTGCCACAG 59.937 57.895 0.00 0.00 38.10 3.66
434 440 0.030101 CCGTCGAGATGAAGAGGCTC 59.970 60.000 6.34 6.34 0.00 4.70
444 450 6.227298 AGATGAAGAGGCTCGAGAAAAATA 57.773 37.500 18.75 0.00 0.00 1.40
450 456 7.657761 TGAAGAGGCTCGAGAAAAATATATTCC 59.342 37.037 18.75 2.68 0.00 3.01
453 459 5.073144 AGGCTCGAGAAAAATATATTCCCCA 59.927 40.000 18.75 0.00 0.00 4.96
457 463 7.065204 GCTCGAGAAAAATATATTCCCCAGATC 59.935 40.741 18.75 0.00 0.00 2.75
467 473 3.770040 CCCAGATCGGCACCGTCA 61.770 66.667 9.23 0.00 40.74 4.35
470 476 1.946156 CAGATCGGCACCGTCATCG 60.946 63.158 9.23 0.00 40.74 3.84
505 513 1.001597 CCGCCGCCTAAGTCTACTAAG 60.002 57.143 0.00 0.00 0.00 2.18
508 516 3.704512 GCCGCCTAAGTCTACTAAGAAC 58.295 50.000 0.00 0.00 32.16 3.01
511 519 3.067883 CGCCTAAGTCTACTAAGAACCCC 59.932 52.174 0.00 0.00 32.16 4.95
533 541 5.222068 CCCCCAAAGTAGGAAAAACTAGAGT 60.222 44.000 0.00 0.00 0.00 3.24
546 554 2.946785 ACTAGAGTTCCATCCGGTAGG 58.053 52.381 0.00 4.77 39.46 3.18
556 564 2.890371 CCGGTAGGTCGGTTCCTG 59.110 66.667 0.00 0.00 44.60 3.86
557 565 1.679977 CCGGTAGGTCGGTTCCTGA 60.680 63.158 0.00 0.00 44.60 3.86
589 605 5.294306 TGCATGACTCTAACAATCGGAAATC 59.706 40.000 0.00 0.00 0.00 2.17
633 649 1.073763 TGTAGCTCCATGTGCTTTGGT 59.926 47.619 14.28 0.00 41.46 3.67
637 653 4.443978 AGCTCCATGTGCTTTGGTATAT 57.556 40.909 4.83 0.00 37.52 0.86
684 704 7.225538 GCATAACTGACAAAGCATATGTAGACT 59.774 37.037 4.29 0.00 34.08 3.24
716 736 7.928706 AGCTAGTTTATAACAGGTAAGCATCAG 59.071 37.037 0.00 0.00 0.00 2.90
916 941 0.109723 CCTACCCCTCTCTCTCTCCG 59.890 65.000 0.00 0.00 0.00 4.63
960 990 1.831286 CATCTCATGCCCCCAAGCC 60.831 63.158 0.00 0.00 0.00 4.35
1085 1122 2.123251 TCCCCTCCTCGCTCCATC 60.123 66.667 0.00 0.00 0.00 3.51
1131 1168 4.697756 CCGCCGGTGCTCCAAGAA 62.698 66.667 10.27 0.00 34.43 2.52
1141 1178 3.628646 CTCCAAGAACAGCCCGGGG 62.629 68.421 25.28 9.31 0.00 5.73
1142 1179 3.966543 CCAAGAACAGCCCGGGGT 61.967 66.667 22.45 22.45 0.00 4.95
1320 1359 1.734117 GCCTTTGTTGTCGCATGGC 60.734 57.895 0.00 0.00 33.64 4.40
1342 1381 4.672801 GCGTTTCTTGCTTGATTCCTTAGG 60.673 45.833 0.00 0.00 0.00 2.69
1365 1404 5.186603 GGAATCTTGGAATTTTTCTCAGGCT 59.813 40.000 0.00 0.00 0.00 4.58
1373 1412 1.999648 TTTTCTCAGGCTGGCACATT 58.000 45.000 15.73 0.00 38.20 2.71
1384 1423 4.120331 GCACATTGGCGGCCAGAC 62.120 66.667 22.59 7.38 33.81 3.51
1385 1424 2.672651 CACATTGGCGGCCAGACA 60.673 61.111 22.59 8.22 33.81 3.41
1460 1499 3.068165 CCGAGCTCATGGTAAGATGTGTA 59.932 47.826 15.40 0.00 0.00 2.90
1477 1516 8.595362 AGATGTGTATTGCTATATACCTGCTA 57.405 34.615 11.34 0.00 31.38 3.49
1515 1563 2.343101 GGCGTGTGATAGTGCTAACAA 58.657 47.619 0.00 0.00 0.00 2.83
1556 1608 0.401979 AGGGGACTGATGGGTATGGG 60.402 60.000 0.00 0.00 41.13 4.00
1613 1665 4.033709 CAGAGAAGGGGAAGATGAAGGTA 58.966 47.826 0.00 0.00 0.00 3.08
1751 1803 1.063006 CAGGTATGCACGCACATGC 59.937 57.895 0.00 0.00 46.32 4.06
1819 1871 2.035066 CCCAAATCCAATTCGAGGATGC 59.965 50.000 5.51 0.00 44.94 3.91
1835 1887 4.430423 GCGCGCGAACTGTGAAGG 62.430 66.667 37.18 0.00 0.00 3.46
1897 1985 8.784043 ACTCTAATTTGCAGATTCTAAAAACGT 58.216 29.630 5.63 0.00 0.00 3.99
1907 1995 7.692705 GCAGATTCTAAAAACGTGGAAATAGAC 59.307 37.037 0.00 0.00 0.00 2.59
1931 2032 5.972107 AAAGTGGGATAGCAATATCATGC 57.028 39.130 0.00 0.00 46.78 4.06
1950 2051 2.694628 TGCCCATTCAAATCCTACATGC 59.305 45.455 0.00 0.00 0.00 4.06
1992 2097 7.080353 TGCATCACAGAAAGACATAGAATTG 57.920 36.000 0.00 0.00 0.00 2.32
2073 2180 9.116067 TCATTAGAAAAATCCCTATGGTTTACG 57.884 33.333 0.00 0.00 0.00 3.18
2077 2184 6.482308 AGAAAAATCCCTATGGTTTACGATCG 59.518 38.462 14.88 14.88 0.00 3.69
2101 2215 6.258068 CGTAAAAACCACATAGGAGGATTCTC 59.742 42.308 0.00 0.00 41.22 2.87
2185 2314 7.410991 ACATAAGCCAAGTAATTTACCCTTCT 58.589 34.615 2.92 0.00 0.00 2.85
2224 2353 9.777297 GTAATAATTAATCCATTGCCCACATTT 57.223 29.630 5.80 0.00 0.00 2.32
2326 2456 4.019858 TCCAAACATTGTGAGAACCAACA 58.980 39.130 0.00 0.00 0.00 3.33
2360 2490 1.549203 TACGAGGGTGGTTGTACTCC 58.451 55.000 0.00 0.00 0.00 3.85
2426 2556 7.873505 GTGTCCCACTAAGGTGATATATTCTTC 59.126 40.741 0.00 0.00 45.61 2.87
2427 2557 7.567250 TGTCCCACTAAGGTGATATATTCTTCA 59.433 37.037 0.00 0.00 45.61 3.02
2431 2561 8.091449 CCACTAAGGTGATATATTCTTCAGGTC 58.909 40.741 0.00 0.00 45.61 3.85
2464 2594 5.084722 GTGAATTCGTCAATCTGAAGCTTG 58.915 41.667 2.10 0.00 38.23 4.01
2466 2596 1.442769 TCGTCAATCTGAAGCTTGGC 58.557 50.000 2.10 0.00 0.00 4.52
2467 2597 0.095935 CGTCAATCTGAAGCTTGGCG 59.904 55.000 2.10 6.52 41.61 5.69
2486 2616 2.791849 GCGACTCATGTCTTCGGTAGTC 60.792 54.545 12.85 6.28 40.86 2.59
2501 2631 1.521423 GTAGTCGTTGTGTGAGTGTGC 59.479 52.381 0.00 0.00 0.00 4.57
2504 2634 1.143373 TCGTTGTGTGAGTGTGCGTC 61.143 55.000 0.00 0.00 0.00 5.19
2515 2645 3.649986 GTGCGTCTGTGGTGGTGC 61.650 66.667 0.00 0.00 0.00 5.01
2519 2649 1.648720 CGTCTGTGGTGGTGCTTTG 59.351 57.895 0.00 0.00 0.00 2.77
2533 2663 1.012486 GCTTTGCTTGCATGTGAGCC 61.012 55.000 16.42 1.86 38.11 4.70
2614 2744 5.409826 CCACACATAACCTTGAGAAAGACTC 59.590 44.000 0.00 0.00 45.11 3.36
2636 2766 5.880341 TCGGAAGTATGATAGATATGCACG 58.120 41.667 0.00 0.00 0.00 5.34
2639 2769 6.416161 CGGAAGTATGATAGATATGCACGATG 59.584 42.308 0.00 0.00 0.00 3.84
2678 2809 3.068165 GGGTGCCCTGTTCATTATTTAGC 59.932 47.826 0.00 0.00 0.00 3.09
2715 2846 8.742777 AGCATAACATTGAAGTATCATTGTGTT 58.257 29.630 7.01 7.94 44.94 3.32
2716 2847 8.800972 GCATAACATTGAAGTATCATTGTGTTG 58.199 33.333 7.01 8.50 44.94 3.33
2719 2850 8.801715 AACATTGAAGTATCATTGTGTTGAAC 57.198 30.769 7.01 0.00 44.94 3.18
2720 2851 8.169977 ACATTGAAGTATCATTGTGTTGAACT 57.830 30.769 0.00 0.00 44.35 3.01
2721 2852 8.077991 ACATTGAAGTATCATTGTGTTGAACTG 58.922 33.333 0.00 0.00 44.35 3.16
2722 2853 7.566760 TTGAAGTATCATTGTGTTGAACTGT 57.433 32.000 0.00 0.00 34.96 3.55
2825 2964 7.549839 ACACTTTGATTGTATGAATTCCATGG 58.450 34.615 4.97 4.97 36.71 3.66
2843 2982 7.605410 TCCATGGAAAAGATTAGAACGTTAC 57.395 36.000 13.46 0.00 0.00 2.50
2876 3015 5.725551 ATACCATGACCTTTCCAACCATA 57.274 39.130 0.00 0.00 0.00 2.74
2956 3095 5.553290 TTTTGACATGAACTCAAACGTCA 57.447 34.783 8.93 6.10 37.36 4.35
2958 3097 6.852858 TTTGACATGAACTCAAACGTCATA 57.147 33.333 0.00 4.59 35.24 2.15
2964 3103 9.297586 GACATGAACTCAAACGTCATAGTATTA 57.702 33.333 0.00 0.00 0.00 0.98
3038 3177 8.480501 AGCATTGCAACTGGATTTCTTATAAAT 58.519 29.630 11.91 0.00 0.00 1.40
3086 3229 2.832661 TTGCTTGCCTGGTGCGTT 60.833 55.556 0.00 0.00 45.60 4.84
3087 3230 3.136345 TTGCTTGCCTGGTGCGTTG 62.136 57.895 0.00 0.00 45.60 4.10
3089 3232 3.594775 CTTGCCTGGTGCGTTGCA 61.595 61.111 0.00 0.00 45.60 4.08
3090 3233 2.911509 TTGCCTGGTGCGTTGCAT 60.912 55.556 0.00 0.00 45.60 3.96
3091 3234 1.585267 CTTGCCTGGTGCGTTGCATA 61.585 55.000 0.00 0.00 45.60 3.14
3092 3235 1.175347 TTGCCTGGTGCGTTGCATAA 61.175 50.000 0.00 0.00 45.60 1.90
3118 3261 1.852067 GCTCGCGTGGTTTTGTCCAT 61.852 55.000 5.77 0.00 39.81 3.41
3135 3278 9.631257 TTTTGTCCATATTCAGATCATGTATGT 57.369 29.630 0.00 0.00 0.00 2.29
3150 3293 6.350906 TCATGTATGTCTGCATCATCTTCAA 58.649 36.000 7.62 0.00 36.58 2.69
3167 3310 3.965379 TCAATGGATGTGCAATTGCTT 57.035 38.095 29.37 15.27 42.66 3.91
3173 3316 2.159071 GGATGTGCAATTGCTTGGCATA 60.159 45.455 29.37 9.14 38.76 3.14
3174 3317 3.493699 GGATGTGCAATTGCTTGGCATAT 60.494 43.478 29.37 13.47 38.76 1.78
3175 3318 3.167921 TGTGCAATTGCTTGGCATATC 57.832 42.857 29.37 10.02 38.76 1.63
3176 3319 2.496470 TGTGCAATTGCTTGGCATATCA 59.504 40.909 29.37 12.08 38.76 2.15
3177 3320 3.133183 TGTGCAATTGCTTGGCATATCAT 59.867 39.130 29.37 0.00 38.76 2.45
3178 3321 4.124238 GTGCAATTGCTTGGCATATCATT 58.876 39.130 29.37 0.00 38.76 2.57
3179 3322 4.025229 GTGCAATTGCTTGGCATATCATTG 60.025 41.667 29.37 9.10 38.76 2.82
3210 3357 3.265737 TGCATCCACCTAGGTACAACATT 59.734 43.478 15.80 0.00 39.02 2.71
3216 3363 4.505918 CCACCTAGGTACAACATTGGTCAA 60.506 45.833 15.80 0.00 35.98 3.18
3236 3431 5.182487 TCAAGTATGACTTTGTGTGTGTGT 58.818 37.500 0.00 0.00 36.03 3.72
3244 3439 0.242286 TTGTGTGTGTGTGTTGGTGC 59.758 50.000 0.00 0.00 0.00 5.01
3245 3440 0.890996 TGTGTGTGTGTGTTGGTGCA 60.891 50.000 0.00 0.00 0.00 4.57
3254 3449 0.530288 GTGTTGGTGCAGGTTGTGTT 59.470 50.000 0.00 0.00 0.00 3.32
3256 3451 1.102978 GTTGGTGCAGGTTGTGTTCT 58.897 50.000 0.00 0.00 0.00 3.01
3267 3462 5.163814 GCAGGTTGTGTTCTTCATAGTCATC 60.164 44.000 0.00 0.00 0.00 2.92
3268 3463 5.934043 CAGGTTGTGTTCTTCATAGTCATCA 59.066 40.000 0.00 0.00 0.00 3.07
3301 3497 6.094048 AGTGTGTGCTCATTGTATTTGTATCC 59.906 38.462 0.00 0.00 0.00 2.59
3312 3509 9.466497 CATTGTATTTGTATCCCCTTATGCTAT 57.534 33.333 0.00 0.00 0.00 2.97
3349 3546 9.959749 AAAAGTAATAAAAACGCTCTTCATTGA 57.040 25.926 0.00 0.00 0.00 2.57
3415 3614 8.647143 TTTTCTAAGACTTCCTTTGCAATTTG 57.353 30.769 0.00 0.00 36.34 2.32
3416 3615 5.772521 TCTAAGACTTCCTTTGCAATTTGC 58.227 37.500 14.49 14.49 38.92 3.68
3434 3633 7.359181 GCAATTTGCACTACATTGTAAAGGAAC 60.359 37.037 16.35 0.00 44.26 3.62
3457 3656 2.787473 TGCATCCACCTAAACCTCTG 57.213 50.000 0.00 0.00 0.00 3.35
3459 3658 2.846206 TGCATCCACCTAAACCTCTGAT 59.154 45.455 0.00 0.00 0.00 2.90
3465 3664 7.068716 GCATCCACCTAAACCTCTGATAAAAAT 59.931 37.037 0.00 0.00 0.00 1.82
3540 3739 7.275888 TCATCCATTATTATTTGAGTGGCAC 57.724 36.000 10.29 10.29 0.00 5.01
3552 3751 9.549078 TTATTTGAGTGGCACGATATTGTAATA 57.451 29.630 12.71 6.46 0.00 0.98
3553 3752 7.477144 TTTGAGTGGCACGATATTGTAATAG 57.523 36.000 12.71 0.00 0.00 1.73
3556 3755 7.892609 TGAGTGGCACGATATTGTAATAGTAT 58.107 34.615 12.71 0.00 0.00 2.12
3573 3772 9.000486 GTAATAGTATGTTTTCCCTATTCAGGC 58.000 37.037 0.00 0.00 41.08 4.85
3630 3829 1.565288 TCCAATGCACCATCATCTCCA 59.435 47.619 0.00 0.00 0.00 3.86
3634 3833 1.278537 TGCACCATCATCTCCACTCA 58.721 50.000 0.00 0.00 0.00 3.41
3643 3842 5.071519 CCATCATCTCCACTCATTTCCTACT 59.928 44.000 0.00 0.00 0.00 2.57
3650 3849 9.661954 ATCTCCACTCATTTCCTACTCTAAATA 57.338 33.333 0.00 0.00 0.00 1.40
3714 3913 8.673711 CATGGATTCGGAAATTCTAGTGTTTTA 58.326 33.333 0.00 0.00 0.00 1.52
3747 3947 8.354711 TCAGGAATCTGGATAGTACATGATAC 57.645 38.462 0.00 0.00 41.23 2.24
3749 3949 8.249638 CAGGAATCTGGATAGTACATGATACAG 58.750 40.741 0.00 0.00 35.61 2.74
3795 3995 5.404667 ACTTCGTTTTCTAAACCTTCTAGCG 59.595 40.000 0.00 0.00 0.00 4.26
3805 4005 4.443913 AACCTTCTAGCGAGAGAGTTTC 57.556 45.455 7.46 0.00 31.77 2.78
3810 4010 5.929415 CCTTCTAGCGAGAGAGTTTCTTTTT 59.071 40.000 0.00 0.00 35.87 1.94
3884 4084 3.438781 TCATTCCTTACAACATTCGCCAC 59.561 43.478 0.00 0.00 0.00 5.01
3891 4091 3.545124 AACATTCGCCACGCAGGGA 62.545 57.895 0.00 0.00 38.09 4.20
3935 4135 6.408107 TGGTTAGGTTTGTGGGATTAAAAC 57.592 37.500 0.00 0.00 33.90 2.43
3976 4176 9.313323 CTTGTGATACACTTTTGTATTTGTACG 57.687 33.333 0.00 0.00 47.00 3.67
3977 4177 8.367943 TGTGATACACTTTTGTATTTGTACGT 57.632 30.769 0.00 0.00 47.00 3.57
3978 4178 9.473640 TGTGATACACTTTTGTATTTGTACGTA 57.526 29.630 0.00 0.00 47.00 3.57
3999 4199 5.569059 CGTAACTGCAAATGAAAACTCCATC 59.431 40.000 0.00 0.00 0.00 3.51
4000 4200 4.525912 ACTGCAAATGAAAACTCCATCC 57.474 40.909 0.00 0.00 0.00 3.51
4022 4222 6.243148 TCCAGTGTAACCTAGAAAAATTCCC 58.757 40.000 0.00 0.00 37.80 3.97
4029 4229 7.898636 TGTAACCTAGAAAAATTCCCATGGATT 59.101 33.333 15.22 2.60 0.00 3.01
4039 4239 5.937492 ATTCCCATGGATTATGACTTCCT 57.063 39.130 15.22 0.00 39.21 3.36
4040 4240 7.406620 AATTCCCATGGATTATGACTTCCTA 57.593 36.000 15.22 0.00 39.21 2.94
4041 4241 5.825593 TCCCATGGATTATGACTTCCTAC 57.174 43.478 15.22 0.00 39.21 3.18
4042 4242 4.283467 TCCCATGGATTATGACTTCCTACG 59.717 45.833 15.22 0.00 39.21 3.51
4043 4243 4.040461 CCCATGGATTATGACTTCCTACGT 59.960 45.833 15.22 0.00 39.21 3.57
4044 4244 5.454755 CCCATGGATTATGACTTCCTACGTT 60.455 44.000 15.22 0.00 39.21 3.99
4045 4245 6.055588 CCATGGATTATGACTTCCTACGTTT 58.944 40.000 5.56 0.00 39.21 3.60
4046 4246 6.202954 CCATGGATTATGACTTCCTACGTTTC 59.797 42.308 5.56 0.00 39.21 2.78
4047 4247 6.540438 TGGATTATGACTTCCTACGTTTCT 57.460 37.500 0.00 0.00 32.95 2.52
4053 4253 1.968493 ACTTCCTACGTTTCTCCTGCA 59.032 47.619 0.00 0.00 0.00 4.41
4077 4277 7.479980 CATTGTAACCAAATATTCATCGGTGT 58.520 34.615 0.00 0.00 33.44 4.16
4085 4285 6.039717 CCAAATATTCATCGGTGTCAATTCCT 59.960 38.462 0.00 0.00 0.00 3.36
4137 4341 5.316987 GGGCATGCCTCTGTAATACTATTT 58.683 41.667 34.70 0.00 36.10 1.40
4140 4344 7.363431 GGCATGCCTCTGTAATACTATTTTTC 58.637 38.462 29.98 0.00 0.00 2.29
4156 4360 8.950007 ACTATTTTTCCCTTCTATTTTGGTGA 57.050 30.769 0.00 0.00 0.00 4.02
4247 4455 3.848272 TGCTTGCATTTAGCTTGTACC 57.152 42.857 10.10 0.00 45.94 3.34
4282 4518 8.050930 TCCAAAACTTGAAGTTCTAGGTTAGTT 58.949 33.333 16.37 7.74 37.47 2.24
4461 4699 5.077564 ACTTAAAAGAGGTTTGGCTTAGGG 58.922 41.667 0.00 0.00 0.00 3.53
4462 4700 1.924731 AAAGAGGTTTGGCTTAGGGC 58.075 50.000 0.00 0.00 40.90 5.19
4463 4701 0.777446 AAGAGGTTTGGCTTAGGGCA 59.223 50.000 0.00 0.00 46.41 5.36
4490 4755 7.506114 ACCTAGTATTTTCACACTGAAGAACA 58.494 34.615 0.00 0.00 37.70 3.18
4492 4757 9.003658 CCTAGTATTTTCACACTGAAGAACATT 57.996 33.333 0.00 0.00 37.70 2.71
4495 4760 8.902806 AGTATTTTCACACTGAAGAACATTTGA 58.097 29.630 0.00 0.00 37.70 2.69
4496 4761 9.683069 GTATTTTCACACTGAAGAACATTTGAT 57.317 29.630 0.00 0.00 37.70 2.57
4498 4763 9.903682 ATTTTCACACTGAAGAACATTTGATAG 57.096 29.630 0.00 0.00 37.70 2.08
4499 4764 8.450578 TTTCACACTGAAGAACATTTGATAGT 57.549 30.769 0.00 0.00 37.70 2.12
4506 4774 9.376075 ACTGAAGAACATTTGATAGTGATACTG 57.624 33.333 0.00 0.00 0.00 2.74
4507 4775 9.376075 CTGAAGAACATTTGATAGTGATACTGT 57.624 33.333 0.00 0.00 0.00 3.55
4522 4790 6.655003 AGTGATACTGTAATGTTTTCCCACAG 59.345 38.462 0.00 0.00 41.83 3.66
4559 4827 7.391554 ACAGTGTTCATGAATATTAACTGTGCT 59.608 33.333 25.94 13.26 43.83 4.40
4560 4828 7.695201 CAGTGTTCATGAATATTAACTGTGCTG 59.305 37.037 12.12 5.49 31.38 4.41
4572 4840 6.554334 TTAACTGTGCTGGTACTTCAATTC 57.446 37.500 0.00 0.00 0.00 2.17
4579 4847 7.168219 TGTGCTGGTACTTCAATTCTAGATTT 58.832 34.615 0.00 0.00 0.00 2.17
4581 4849 8.178313 GTGCTGGTACTTCAATTCTAGATTTTC 58.822 37.037 0.00 0.00 0.00 2.29
4601 4869 8.661352 ATTTTCATGATACGTGTGATGTGATA 57.339 30.769 11.16 0.00 0.00 2.15
4627 4896 5.416013 ACTGTGTCTCGAAGATCTATTGTGA 59.584 40.000 0.00 0.00 33.89 3.58
4985 5308 9.788960 GCTTTTGGTAATTTGGTTTAGATAGAG 57.211 33.333 0.00 0.00 0.00 2.43
5106 5429 1.947456 AGCATCTACAGTCGCGATGTA 59.053 47.619 14.06 19.32 37.46 2.29
5107 5430 2.357952 AGCATCTACAGTCGCGATGTAA 59.642 45.455 22.60 16.71 37.46 2.41
5108 5431 2.468040 GCATCTACAGTCGCGATGTAAC 59.532 50.000 22.60 9.20 37.46 2.50
5163 5497 2.722094 TCAGGCACGCCTCATATTTTT 58.278 42.857 7.85 0.00 46.28 1.94
5313 7817 6.766944 ACATCATCCAAAAGATCATCTGAGTC 59.233 38.462 0.00 0.00 30.59 3.36
5336 7840 4.440758 CCGTCGTCGTACAAGTTCTTAAAA 59.559 41.667 0.71 0.00 35.01 1.52
5380 7888 0.543749 CATTGGAGGAGGAGTGGGAC 59.456 60.000 0.00 0.00 0.00 4.46
5396 7904 0.818040 GGACCACCACTTTCGTGCTT 60.818 55.000 0.00 0.00 39.86 3.91
5400 7908 1.152963 ACCACTTTCGTGCTTGGCT 60.153 52.632 0.00 0.00 39.86 4.75
5415 7923 1.032014 TGGCTTTTGCTCTTTCGCTT 58.968 45.000 0.00 0.00 46.54 4.68
5484 7992 0.832135 TCGAAGGAGGTGGAGCTGTT 60.832 55.000 0.00 0.00 0.00 3.16
5491 7999 1.069090 GGTGGAGCTGTTGTCGTCA 59.931 57.895 0.00 0.00 0.00 4.35
5561 8097 0.252197 GATGGCCTTGTCCTACCGTT 59.748 55.000 3.32 0.00 0.00 4.44
5564 8100 1.302192 GCCTTGTCCTACCGTTGCA 60.302 57.895 0.00 0.00 0.00 4.08
5701 8237 4.796231 GCCGTCATGAGCGACCGT 62.796 66.667 16.06 0.00 31.91 4.83
5754 8293 3.532155 GAGCTCCGCCGACATCCT 61.532 66.667 0.87 0.00 0.00 3.24
5816 8355 2.203640 TCCACTGCCTCTCACGGT 60.204 61.111 0.00 0.00 0.00 4.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.744771 GGATCCAACGGTGAAGAGGC 60.745 60.000 6.95 0.00 0.00 4.70
1 2 0.613260 TGGATCCAACGGTGAAGAGG 59.387 55.000 13.46 0.00 0.00 3.69
2 3 1.001974 TGTGGATCCAACGGTGAAGAG 59.998 52.381 18.20 0.00 0.00 2.85
3 4 1.052617 TGTGGATCCAACGGTGAAGA 58.947 50.000 18.20 0.00 0.00 2.87
4 5 2.113860 ATGTGGATCCAACGGTGAAG 57.886 50.000 18.20 0.00 0.00 3.02
5 6 2.835156 TCTATGTGGATCCAACGGTGAA 59.165 45.455 18.20 0.00 0.00 3.18
6 7 2.167693 GTCTATGTGGATCCAACGGTGA 59.832 50.000 18.20 8.70 0.00 4.02
7 8 2.093711 TGTCTATGTGGATCCAACGGTG 60.094 50.000 18.20 6.36 0.00 4.94
8 9 2.184533 TGTCTATGTGGATCCAACGGT 58.815 47.619 18.20 5.35 0.00 4.83
9 10 2.979814 TGTCTATGTGGATCCAACGG 57.020 50.000 18.20 7.44 0.00 4.44
10 11 4.441792 TCATTGTCTATGTGGATCCAACG 58.558 43.478 18.20 5.26 35.64 4.10
11 12 5.647658 TGTTCATTGTCTATGTGGATCCAAC 59.352 40.000 18.20 11.45 35.64 3.77
12 13 5.647658 GTGTTCATTGTCTATGTGGATCCAA 59.352 40.000 18.20 7.57 35.64 3.53
13 14 5.185454 GTGTTCATTGTCTATGTGGATCCA 58.815 41.667 11.44 11.44 35.64 3.41
14 15 5.185454 TGTGTTCATTGTCTATGTGGATCC 58.815 41.667 4.20 4.20 35.64 3.36
15 16 6.932356 ATGTGTTCATTGTCTATGTGGATC 57.068 37.500 0.00 0.00 35.64 3.36
16 17 7.707624 AAATGTGTTCATTGTCTATGTGGAT 57.292 32.000 0.00 0.00 42.60 3.41
17 18 7.230309 TCAAAATGTGTTCATTGTCTATGTGGA 59.770 33.333 0.00 0.00 42.60 4.02
18 19 7.369607 TCAAAATGTGTTCATTGTCTATGTGG 58.630 34.615 0.00 0.00 42.60 4.17
19 20 8.800231 TTCAAAATGTGTTCATTGTCTATGTG 57.200 30.769 0.00 0.00 42.60 3.21
20 21 9.985730 AATTCAAAATGTGTTCATTGTCTATGT 57.014 25.926 0.00 0.00 42.60 2.29
22 23 8.928733 GCAATTCAAAATGTGTTCATTGTCTAT 58.071 29.630 0.00 0.00 42.60 1.98
23 24 7.924947 TGCAATTCAAAATGTGTTCATTGTCTA 59.075 29.630 0.00 0.00 42.60 2.59
24 25 6.762187 TGCAATTCAAAATGTGTTCATTGTCT 59.238 30.769 0.00 0.00 42.60 3.41
25 26 6.946165 TGCAATTCAAAATGTGTTCATTGTC 58.054 32.000 0.00 0.00 42.60 3.18
26 27 6.512091 GCTGCAATTCAAAATGTGTTCATTGT 60.512 34.615 0.00 0.00 42.60 2.71
27 28 5.849081 GCTGCAATTCAAAATGTGTTCATTG 59.151 36.000 0.00 0.00 42.60 2.82
28 29 5.527951 TGCTGCAATTCAAAATGTGTTCATT 59.472 32.000 0.00 0.00 44.94 2.57
29 30 5.049954 GTGCTGCAATTCAAAATGTGTTCAT 60.050 36.000 2.77 0.00 35.59 2.57
48 49 0.669619 TTGAGGTTGTGCATGTGCTG 59.330 50.000 6.55 0.00 42.66 4.41
51 52 3.374745 GAGTTTTGAGGTTGTGCATGTG 58.625 45.455 0.00 0.00 0.00 3.21
64 65 4.523943 CACAATCCATTGAGGGAGTTTTGA 59.476 41.667 6.29 0.00 41.08 2.69
65 66 4.523943 TCACAATCCATTGAGGGAGTTTTG 59.476 41.667 6.29 0.00 41.08 2.44
69 70 3.372349 CCATCACAATCCATTGAGGGAGT 60.372 47.826 6.29 0.00 44.80 3.85
80 81 0.035439 ACGGTGGTCCATCACAATCC 60.035 55.000 2.31 0.00 39.27 3.01
86 87 1.302431 CAGCAACGGTGGTCCATCA 60.302 57.895 0.00 0.00 31.53 3.07
91 92 3.050275 GAGGCAGCAACGGTGGTC 61.050 66.667 0.00 0.00 31.53 4.02
95 96 0.674895 GATGAAGAGGCAGCAACGGT 60.675 55.000 0.00 0.00 0.00 4.83
99 100 0.737367 CGACGATGAAGAGGCAGCAA 60.737 55.000 0.00 0.00 0.00 3.91
108 109 1.318785 CGACTTGCTTCGACGATGAAG 59.681 52.381 14.34 14.78 46.47 3.02
110 111 0.240145 ACGACTTGCTTCGACGATGA 59.760 50.000 14.34 0.00 41.78 2.92
118 119 3.878086 TGATCAACAACGACTTGCTTC 57.122 42.857 0.00 0.00 0.00 3.86
119 120 3.058016 CCATGATCAACAACGACTTGCTT 60.058 43.478 0.00 0.00 0.00 3.91
123 124 3.691118 CCATCCATGATCAACAACGACTT 59.309 43.478 0.00 0.00 0.00 3.01
138 139 2.641815 GCTATGAGGACTTCCCATCCAT 59.358 50.000 3.35 0.00 38.86 3.41
145 146 0.105039 CCGTGGCTATGAGGACTTCC 59.895 60.000 0.00 0.00 0.00 3.46
146 147 0.824759 ACCGTGGCTATGAGGACTTC 59.175 55.000 0.00 0.00 0.00 3.01
148 149 1.043673 GGACCGTGGCTATGAGGACT 61.044 60.000 0.00 0.00 0.00 3.85
149 150 1.043673 AGGACCGTGGCTATGAGGAC 61.044 60.000 0.00 0.00 0.00 3.85
156 159 1.078891 TTGGGTAGGACCGTGGCTA 59.921 57.895 0.00 0.00 39.83 3.93
157 160 2.203877 TTGGGTAGGACCGTGGCT 60.204 61.111 0.00 0.00 39.83 4.75
162 165 2.267961 GCTGGTTGGGTAGGACCG 59.732 66.667 0.00 0.00 39.83 4.79
167 170 0.541863 CTAGGGTGCTGGTTGGGTAG 59.458 60.000 0.00 0.00 0.00 3.18
171 174 0.909610 TCCTCTAGGGTGCTGGTTGG 60.910 60.000 0.00 0.00 36.25 3.77
172 175 0.984230 TTCCTCTAGGGTGCTGGTTG 59.016 55.000 0.00 0.00 36.25 3.77
178 181 4.522789 TCAACAATTTTTCCTCTAGGGTGC 59.477 41.667 0.00 0.00 36.25 5.01
180 183 6.373759 ACTTCAACAATTTTTCCTCTAGGGT 58.626 36.000 0.00 0.00 36.25 4.34
189 192 5.455525 CCTGTGACGACTTCAACAATTTTTC 59.544 40.000 0.00 0.00 35.39 2.29
191 194 4.638421 TCCTGTGACGACTTCAACAATTTT 59.362 37.500 0.00 0.00 35.39 1.82
195 198 2.971660 TCCTGTGACGACTTCAACAA 57.028 45.000 0.00 0.00 35.39 2.83
197 200 3.093717 TCTTCCTGTGACGACTTCAAC 57.906 47.619 0.00 0.00 35.39 3.18
206 209 4.101585 TGGATATGTGGATCTTCCTGTGAC 59.898 45.833 0.00 0.00 37.46 3.67
209 215 4.971282 TCTTGGATATGTGGATCTTCCTGT 59.029 41.667 0.00 0.00 37.46 4.00
216 222 4.916041 TGGGATCTTGGATATGTGGATC 57.084 45.455 0.00 0.00 34.00 3.36
219 225 3.139025 AGGTTGGGATCTTGGATATGTGG 59.861 47.826 0.00 0.00 0.00 4.17
264 270 2.923426 ATATGACCACCGGTGCAGCG 62.923 60.000 30.27 30.27 35.25 5.18
265 271 1.153168 ATATGACCACCGGTGCAGC 60.153 57.895 29.75 19.22 35.25 5.25
266 272 0.177836 TGATATGACCACCGGTGCAG 59.822 55.000 29.75 18.80 35.25 4.41
267 273 0.615850 TTGATATGACCACCGGTGCA 59.384 50.000 29.75 22.26 35.25 4.57
280 286 3.576118 CCTCCTCTCCGTCACATTGATAT 59.424 47.826 0.00 0.00 0.00 1.63
283 289 1.186200 CCTCCTCTCCGTCACATTGA 58.814 55.000 0.00 0.00 0.00 2.57
287 293 0.989602 TCTACCTCCTCTCCGTCACA 59.010 55.000 0.00 0.00 0.00 3.58
293 299 3.833729 GGTCCTCTACCTCCTCTCC 57.166 63.158 0.00 0.00 45.75 3.71
303 309 2.224769 CCCTTTGCAGTTTGGTCCTCTA 60.225 50.000 0.00 0.00 0.00 2.43
339 345 6.443792 CAAGGTTAGGGTTTGTTAATGTGAC 58.556 40.000 0.00 0.00 0.00 3.67
345 351 5.239087 CGTTAGCAAGGTTAGGGTTTGTTAA 59.761 40.000 0.00 0.00 0.00 2.01
369 375 1.416401 TGAATTCCTGCCGGTCTATCC 59.584 52.381 1.90 0.00 0.00 2.59
396 402 0.163788 GTGTCGACTGTGGCAATTCG 59.836 55.000 17.92 7.19 0.00 3.34
399 405 1.667830 CGGTGTCGACTGTGGCAAT 60.668 57.895 17.92 0.00 39.00 3.56
401 407 3.493830 GACGGTGTCGACTGTGGCA 62.494 63.158 17.92 0.00 42.11 4.92
420 426 3.791973 TTTCTCGAGCCTCTTCATCTC 57.208 47.619 7.81 0.00 0.00 2.75
426 432 6.937465 GGGAATATATTTTTCTCGAGCCTCTT 59.063 38.462 7.81 0.00 0.00 2.85
427 433 6.468543 GGGAATATATTTTTCTCGAGCCTCT 58.531 40.000 7.81 0.00 0.00 3.69
434 440 6.313905 CCGATCTGGGGAATATATTTTTCTCG 59.686 42.308 0.00 3.39 0.00 4.04
444 450 0.693049 GGTGCCGATCTGGGGAATAT 59.307 55.000 5.87 0.00 38.63 1.28
450 456 2.978452 GATGACGGTGCCGATCTGGG 62.978 65.000 18.16 0.00 42.83 4.45
453 459 2.413351 CGATGACGGTGCCGATCT 59.587 61.111 18.16 0.62 42.83 2.75
470 476 4.520846 CGGCGCTTCGTTGATGGC 62.521 66.667 7.64 0.00 0.00 4.40
490 498 3.387374 GGGGGTTCTTAGTAGACTTAGGC 59.613 52.174 0.00 0.00 0.00 3.93
511 519 6.430308 GGAACTCTAGTTTTTCCTACTTTGGG 59.570 42.308 10.66 0.00 38.56 4.12
520 528 3.939592 CCGGATGGAACTCTAGTTTTTCC 59.060 47.826 0.00 10.90 38.56 3.13
546 554 3.057596 TGCATTTTGATTCAGGAACCGAC 60.058 43.478 0.00 0.00 0.00 4.79
552 560 5.258841 AGAGTCATGCATTTTGATTCAGGA 58.741 37.500 12.21 0.00 33.61 3.86
553 561 5.578005 AGAGTCATGCATTTTGATTCAGG 57.422 39.130 12.21 0.00 33.61 3.86
554 562 7.532571 TGTTAGAGTCATGCATTTTGATTCAG 58.467 34.615 12.21 0.00 33.61 3.02
556 564 8.922058 ATTGTTAGAGTCATGCATTTTGATTC 57.078 30.769 0.00 0.00 31.91 2.52
557 565 7.699391 CGATTGTTAGAGTCATGCATTTTGATT 59.301 33.333 0.00 0.00 0.00 2.57
614 630 1.826385 ACCAAAGCACATGGAGCTAC 58.174 50.000 14.25 0.00 42.53 3.58
633 649 8.736244 GCAACAAGTTCCCAAGTTCTTTATATA 58.264 33.333 0.00 0.00 0.00 0.86
637 653 4.707448 TGCAACAAGTTCCCAAGTTCTTTA 59.293 37.500 0.00 0.00 0.00 1.85
684 704 6.949352 ACCTGTTATAAACTAGCTAGCGTA 57.051 37.500 20.91 12.89 0.00 4.42
737 757 4.632251 GCTGATCCTGCAGATTCATCTATG 59.368 45.833 17.39 6.50 38.14 2.23
812 837 2.352032 GGGACTGGACAGAGACCCG 61.352 68.421 6.29 0.00 33.46 5.28
916 941 2.890945 GGAAGGATAGAGAGAGGCTGAC 59.109 54.545 0.00 0.00 0.00 3.51
960 990 4.819761 TCAGCGCGGCCTAGCTTG 62.820 66.667 17.65 13.36 42.52 4.01
1085 1122 4.389576 GCTTGTGCTGGTTCGGCG 62.390 66.667 0.00 0.00 38.82 6.46
1118 1155 2.328099 GGCTGTTCTTGGAGCACCG 61.328 63.158 0.00 0.00 39.42 4.94
1141 1178 1.352156 GAGAACATCACGCCGTGGAC 61.352 60.000 18.32 4.86 33.87 4.02
1142 1179 1.080093 GAGAACATCACGCCGTGGA 60.080 57.895 18.32 4.58 33.87 4.02
1282 1319 1.230635 GGTCAAGCATGCACGTCAGT 61.231 55.000 21.98 0.00 0.00 3.41
1320 1359 4.695455 TCCTAAGGAATCAAGCAAGAAACG 59.305 41.667 0.00 0.00 0.00 3.60
1342 1381 6.098017 CAGCCTGAGAAAAATTCCAAGATTC 58.902 40.000 0.00 0.00 0.00 2.52
1351 1390 2.318908 TGTGCCAGCCTGAGAAAAATT 58.681 42.857 0.00 0.00 0.00 1.82
1352 1391 1.999648 TGTGCCAGCCTGAGAAAAAT 58.000 45.000 0.00 0.00 0.00 1.82
1356 1395 0.609957 CCAATGTGCCAGCCTGAGAA 60.610 55.000 0.00 0.00 0.00 2.87
1437 1476 1.414181 ACATCTTACCATGAGCTCGGG 59.586 52.381 19.59 19.59 0.00 5.14
1470 1509 5.961396 ATCGTCGATACTTTATAGCAGGT 57.039 39.130 5.79 0.00 0.00 4.00
1477 1516 3.243636 ACGCCCAATCGTCGATACTTTAT 60.244 43.478 8.43 0.00 38.44 1.40
1480 1519 0.458669 ACGCCCAATCGTCGATACTT 59.541 50.000 8.43 0.00 38.44 2.24
1515 1563 1.477295 GCTAGCTCGTGAAACCCTAGT 59.523 52.381 7.70 0.00 32.45 2.57
1556 1608 2.123726 GCCCACCACCATCCATCC 60.124 66.667 0.00 0.00 0.00 3.51
1592 1644 3.213160 ACCTTCATCTTCCCCTTCTCT 57.787 47.619 0.00 0.00 0.00 3.10
1613 1665 1.506025 GCTCCCTCATCTTCCTCCTT 58.494 55.000 0.00 0.00 0.00 3.36
1751 1803 7.586714 AGTAGAAAACGAATTAGGGTAAACG 57.413 36.000 0.00 0.00 0.00 3.60
1819 1871 3.777925 CCCTTCACAGTTCGCGCG 61.778 66.667 26.76 26.76 0.00 6.86
1835 1887 1.594564 GTCGGCGGAATCTAAGGCC 60.595 63.158 7.21 0.00 42.14 5.19
1897 1985 5.885912 GCTATCCCACTTTTGTCTATTTCCA 59.114 40.000 0.00 0.00 0.00 3.53
1907 1995 6.154445 GCATGATATTGCTATCCCACTTTTG 58.846 40.000 0.00 0.00 39.57 2.44
1931 2032 5.603170 AAAGCATGTAGGATTTGAATGGG 57.397 39.130 0.00 0.00 0.00 4.00
1961 2066 4.341806 TGTCTTTCTGTGATGCAACCAAAT 59.658 37.500 0.00 0.00 0.00 2.32
1992 2097 8.633075 TTCATCAACTTCAACATCTTGAAAAC 57.367 30.769 0.00 0.00 44.18 2.43
2073 2180 5.667466 TCCTCCTATGTGGTTTTTACGATC 58.333 41.667 0.00 0.00 37.07 3.69
2077 2184 7.110155 TGAGAATCCTCCTATGTGGTTTTTAC 58.890 38.462 0.00 0.00 38.66 2.01
2089 2203 2.243994 TCGGTCCTTGAGAATCCTCCTA 59.756 50.000 0.00 0.00 38.66 2.94
2163 2292 9.984590 ATTAAGAAGGGTAAATTACTTGGCTTA 57.015 29.630 2.96 4.63 0.00 3.09
2197 2326 7.904558 TGTGGGCAATGGATTAATTATTACA 57.095 32.000 0.00 0.00 0.00 2.41
2254 2383 2.911552 ATGGGTACGGGTTTTCCAAT 57.088 45.000 0.00 0.00 42.91 3.16
2297 2426 6.449698 GTTCTCACAATGTTTGGATGTTGAT 58.550 36.000 0.00 0.00 34.12 2.57
2305 2434 4.383850 TGTTGGTTCTCACAATGTTTGG 57.616 40.909 0.00 0.00 34.12 3.28
2360 2490 2.762969 TTTGACCCCCGATGTGCTGG 62.763 60.000 0.00 0.00 0.00 4.85
2382 2512 4.083271 GGACACAAAGAGCATCAAACCTAC 60.083 45.833 0.00 0.00 37.82 3.18
2426 2556 2.746412 TTCACCACATGGCCGACCTG 62.746 60.000 0.00 0.00 39.32 4.00
2427 2557 1.852157 ATTCACCACATGGCCGACCT 61.852 55.000 0.00 0.00 39.32 3.85
2431 2561 1.305219 ACGAATTCACCACATGGCCG 61.305 55.000 6.22 0.00 39.32 6.13
2466 2596 2.537128 CGACTACCGAAGACATGAGTCG 60.537 54.545 12.88 12.88 46.87 4.18
2467 2597 2.419324 ACGACTACCGAAGACATGAGTC 59.581 50.000 0.00 0.00 42.25 3.36
2486 2616 1.145759 AGACGCACACTCACACAACG 61.146 55.000 0.00 0.00 0.00 4.10
2501 2631 1.648720 CAAAGCACCACCACAGACG 59.351 57.895 0.00 0.00 0.00 4.18
2504 2634 0.249155 CAAGCAAAGCACCACCACAG 60.249 55.000 0.00 0.00 0.00 3.66
2515 2645 0.601558 AGGCTCACATGCAAGCAAAG 59.398 50.000 18.49 0.00 40.36 2.77
2519 2649 1.012841 GTAGAGGCTCACATGCAAGC 58.987 55.000 18.26 10.66 37.80 4.01
2533 2663 5.710984 AGAAACACCGAGTACAATGTAGAG 58.289 41.667 0.00 0.00 0.00 2.43
2566 2696 1.534595 GAGCGGAGATGGCAATGATTC 59.465 52.381 0.00 0.00 0.00 2.52
2614 2744 5.880341 TCGTGCATATCTATCATACTTCCG 58.120 41.667 0.00 0.00 0.00 4.30
2636 2766 3.272581 CCATTTTGGGAAACATGCCATC 58.727 45.455 0.00 0.00 32.67 3.51
2698 2829 7.518211 CGACAGTTCAACACAATGATACTTCAA 60.518 37.037 0.00 0.00 34.96 2.69
2708 2839 3.997021 GGAGATCGACAGTTCAACACAAT 59.003 43.478 0.00 0.00 0.00 2.71
2715 2846 2.890945 TGTCTTGGAGATCGACAGTTCA 59.109 45.455 0.00 0.00 33.15 3.18
2716 2847 3.577649 TGTCTTGGAGATCGACAGTTC 57.422 47.619 0.00 0.00 33.15 3.01
2717 2848 5.506483 CGATATGTCTTGGAGATCGACAGTT 60.506 44.000 6.55 0.00 41.42 3.16
2718 2849 4.023622 CGATATGTCTTGGAGATCGACAGT 60.024 45.833 6.55 0.00 41.42 3.55
2719 2850 4.214332 TCGATATGTCTTGGAGATCGACAG 59.786 45.833 6.55 0.00 42.39 3.51
2720 2851 4.134563 TCGATATGTCTTGGAGATCGACA 58.865 43.478 3.33 3.33 42.39 4.35
2721 2852 4.750952 TCGATATGTCTTGGAGATCGAC 57.249 45.455 1.42 0.00 42.39 4.20
2722 2853 5.966742 ATTCGATATGTCTTGGAGATCGA 57.033 39.130 1.42 1.42 44.73 3.59
2788 2923 7.499321 ACAATCAAAGTGTACGTAAATTCCA 57.501 32.000 0.00 0.00 0.00 3.53
2798 2933 9.507280 CATGGAATTCATACAATCAAAGTGTAC 57.493 33.333 7.93 0.00 34.41 2.90
2837 2976 9.472361 GTCATGGTATACTAATCAATGTAACGT 57.528 33.333 2.25 0.00 0.00 3.99
2838 2977 8.922676 GGTCATGGTATACTAATCAATGTAACG 58.077 37.037 2.25 0.00 0.00 3.18
2843 2982 9.003658 GGAAAGGTCATGGTATACTAATCAATG 57.996 37.037 2.25 0.00 0.00 2.82
2967 3106 9.425248 TCCTTGCAATAAAATAGGATCTCAAAT 57.575 29.630 0.00 0.00 30.30 2.32
2991 3130 9.836864 AATGCTCCAAAATTCCTATAAAAATCC 57.163 29.630 0.00 0.00 0.00 3.01
2998 3137 6.380846 AGTTGCAATGCTCCAAAATTCCTATA 59.619 34.615 6.82 0.00 0.00 1.31
3038 3177 4.571919 CCAACAACCGTCTATAGGAACAA 58.428 43.478 0.00 0.00 0.00 2.83
3054 3193 0.975040 AGCAACCCAACAGCCAACAA 60.975 50.000 0.00 0.00 0.00 2.83
3056 3195 0.530431 CAAGCAACCCAACAGCCAAC 60.530 55.000 0.00 0.00 0.00 3.77
3086 3229 3.486708 CCACGCGAGCTAAAAATTATGCA 60.487 43.478 15.93 0.00 0.00 3.96
3087 3230 3.035942 CCACGCGAGCTAAAAATTATGC 58.964 45.455 15.93 0.00 0.00 3.14
3088 3231 4.273005 ACCACGCGAGCTAAAAATTATG 57.727 40.909 15.93 0.00 0.00 1.90
3089 3232 4.957759 AACCACGCGAGCTAAAAATTAT 57.042 36.364 15.93 0.00 0.00 1.28
3090 3233 4.752661 AAACCACGCGAGCTAAAAATTA 57.247 36.364 15.93 0.00 0.00 1.40
3091 3234 3.636282 AAACCACGCGAGCTAAAAATT 57.364 38.095 15.93 0.00 0.00 1.82
3092 3235 3.243267 ACAAAACCACGCGAGCTAAAAAT 60.243 39.130 15.93 0.00 0.00 1.82
3118 3261 7.673180 TGATGCAGACATACATGATCTGAATA 58.327 34.615 18.59 8.92 35.86 1.75
3135 3278 4.578928 CACATCCATTGAAGATGATGCAGA 59.421 41.667 7.70 0.00 43.15 4.26
3150 3293 1.406341 GCCAAGCAATTGCACATCCAT 60.406 47.619 30.89 6.74 45.16 3.41
3186 3333 3.007635 GTTGTACCTAGGTGGATGCAAC 58.992 50.000 25.33 22.49 39.71 4.17
3195 3342 4.349930 ACTTGACCAATGTTGTACCTAGGT 59.650 41.667 20.57 20.57 0.00 3.08
3216 3363 4.513442 ACACACACACACAAAGTCATACT 58.487 39.130 0.00 0.00 0.00 2.12
3236 3431 0.814457 GAACACAACCTGCACCAACA 59.186 50.000 0.00 0.00 0.00 3.33
3244 3439 5.934043 TGATGACTATGAAGAACACAACCTG 59.066 40.000 0.00 0.00 0.00 4.00
3245 3440 6.014242 TCTGATGACTATGAAGAACACAACCT 60.014 38.462 0.00 0.00 0.00 3.50
3254 3449 2.625314 CGGCCTCTGATGACTATGAAGA 59.375 50.000 0.00 0.00 0.00 2.87
3256 3451 2.625314 CTCGGCCTCTGATGACTATGAA 59.375 50.000 0.00 0.00 0.00 2.57
3267 3462 2.740055 GCACACACTCGGCCTCTG 60.740 66.667 0.00 0.00 0.00 3.35
3268 3463 2.919856 AGCACACACTCGGCCTCT 60.920 61.111 0.00 0.00 0.00 3.69
3352 3549 9.153721 GATTCAATCCTACAAATCATGCAAAAA 57.846 29.630 0.00 0.00 0.00 1.94
3353 3550 7.765360 GGATTCAATCCTACAAATCATGCAAAA 59.235 33.333 9.43 0.00 46.19 2.44
3354 3551 7.267128 GGATTCAATCCTACAAATCATGCAAA 58.733 34.615 9.43 0.00 46.19 3.68
3410 3609 7.951591 AGTTCCTTTACAATGTAGTGCAAATT 58.048 30.769 0.00 0.00 0.00 1.82
3411 3610 7.524717 AGTTCCTTTACAATGTAGTGCAAAT 57.475 32.000 0.00 0.00 0.00 2.32
3412 3611 6.952773 AGTTCCTTTACAATGTAGTGCAAA 57.047 33.333 0.00 0.00 0.00 3.68
3413 3612 6.952773 AAGTTCCTTTACAATGTAGTGCAA 57.047 33.333 0.00 0.00 0.00 4.08
3414 3613 6.952773 AAAGTTCCTTTACAATGTAGTGCA 57.047 33.333 0.00 0.00 31.35 4.57
3415 3614 6.143919 GCAAAAGTTCCTTTACAATGTAGTGC 59.856 38.462 0.00 0.00 31.99 4.40
3416 3615 7.199766 TGCAAAAGTTCCTTTACAATGTAGTG 58.800 34.615 0.00 0.00 31.99 2.74
3434 3633 4.082125 AGAGGTTTAGGTGGATGCAAAAG 58.918 43.478 0.00 0.00 0.00 2.27
3435 3634 3.826157 CAGAGGTTTAGGTGGATGCAAAA 59.174 43.478 0.00 0.00 0.00 2.44
3465 3664 7.384660 GCATGTATCACAGGAAAAACAAATGAA 59.615 33.333 0.00 0.00 30.30 2.57
3519 3718 5.432645 TCGTGCCACTCAAATAATAATGGA 58.567 37.500 0.00 0.00 0.00 3.41
3527 3726 9.203421 CTATTACAATATCGTGCCACTCAAATA 57.797 33.333 0.00 0.00 0.00 1.40
3537 3736 9.807386 GGAAAACATACTATTACAATATCGTGC 57.193 33.333 0.00 0.00 0.00 5.34
3552 3751 5.193679 GTGCCTGAATAGGGAAAACATACT 58.806 41.667 0.00 0.00 46.84 2.12
3553 3752 4.947388 TGTGCCTGAATAGGGAAAACATAC 59.053 41.667 0.00 0.00 46.84 2.39
3556 3755 3.517296 TGTGCCTGAATAGGGAAAACA 57.483 42.857 0.00 0.00 46.84 2.83
3594 3793 4.320788 GCATTGGACTTGAGGACTTCTTTG 60.321 45.833 0.00 0.00 0.00 2.77
3595 3794 3.823304 GCATTGGACTTGAGGACTTCTTT 59.177 43.478 0.00 0.00 0.00 2.52
3596 3795 3.181440 TGCATTGGACTTGAGGACTTCTT 60.181 43.478 0.00 0.00 0.00 2.52
3597 3796 2.373169 TGCATTGGACTTGAGGACTTCT 59.627 45.455 0.00 0.00 0.00 2.85
3598 3797 2.485814 GTGCATTGGACTTGAGGACTTC 59.514 50.000 0.45 0.00 0.00 3.01
3599 3798 2.508526 GTGCATTGGACTTGAGGACTT 58.491 47.619 0.45 0.00 0.00 3.01
3650 3849 6.893958 TTCGCAACAAACAAACACATTATT 57.106 29.167 0.00 0.00 0.00 1.40
3667 3866 9.500785 TCCATGTCTATAATAAATGATTCGCAA 57.499 29.630 0.00 0.00 0.00 4.85
3687 3886 5.745227 ACACTAGAATTTCCGAATCCATGT 58.255 37.500 0.00 0.00 0.00 3.21
3714 3913 4.858965 ATCCAGATTCCTGAAAGAGCTT 57.141 40.909 0.00 0.00 43.02 3.74
3747 3947 0.248458 GGGACAACACGTGTTTGCTG 60.248 55.000 30.49 22.07 41.96 4.41
3749 3949 1.301423 TAGGGACAACACGTGTTTGC 58.699 50.000 30.49 23.66 41.96 3.68
3774 3974 5.048504 TCTCGCTAGAAGGTTTAGAAAACGA 60.049 40.000 0.00 0.00 0.00 3.85
3811 4011 9.695155 TTAATAAATGGGGTGTTTTTCCAAAAA 57.305 25.926 0.00 0.00 35.67 1.94
3812 4012 9.868160 ATTAATAAATGGGGTGTTTTTCCAAAA 57.132 25.926 0.00 0.00 33.90 2.44
3813 4013 9.868160 AATTAATAAATGGGGTGTTTTTCCAAA 57.132 25.926 0.00 0.00 33.90 3.28
3857 4057 6.183360 GGCGAATGTTGTAAGGAATGATTGTA 60.183 38.462 0.00 0.00 0.00 2.41
3884 4084 1.153823 CTAGTGTTCCGTCCCTGCG 60.154 63.158 0.00 0.00 0.00 5.18
3891 4091 1.178276 CTCTCTGGCTAGTGTTCCGT 58.822 55.000 0.00 0.00 0.00 4.69
3935 4135 4.301072 TCACAAGAAAGATTGGTAGGGG 57.699 45.455 0.00 0.00 34.36 4.79
3969 4169 7.251994 AGTTTTCATTTGCAGTTACGTACAAA 58.748 30.769 10.39 10.39 36.53 2.83
3973 4173 5.527951 TGGAGTTTTCATTTGCAGTTACGTA 59.472 36.000 0.00 0.00 0.00 3.57
3974 4174 4.336993 TGGAGTTTTCATTTGCAGTTACGT 59.663 37.500 0.00 0.00 0.00 3.57
3975 4175 4.854399 TGGAGTTTTCATTTGCAGTTACG 58.146 39.130 0.00 0.00 0.00 3.18
3976 4176 5.863935 GGATGGAGTTTTCATTTGCAGTTAC 59.136 40.000 0.00 0.00 0.00 2.50
3977 4177 5.538053 TGGATGGAGTTTTCATTTGCAGTTA 59.462 36.000 0.00 0.00 0.00 2.24
3978 4178 4.344679 TGGATGGAGTTTTCATTTGCAGTT 59.655 37.500 0.00 0.00 0.00 3.16
3999 4199 6.007703 TGGGAATTTTTCTAGGTTACACTGG 58.992 40.000 0.00 0.00 0.00 4.00
4000 4200 7.362920 CCATGGGAATTTTTCTAGGTTACACTG 60.363 40.741 2.85 0.00 0.00 3.66
4022 4222 6.986817 AGAAACGTAGGAAGTCATAATCCATG 59.013 38.462 0.00 0.00 38.23 3.66
4029 4229 4.142227 GCAGGAGAAACGTAGGAAGTCATA 60.142 45.833 0.00 0.00 0.00 2.15
4039 4239 3.998341 GGTTACAATGCAGGAGAAACGTA 59.002 43.478 0.00 0.00 0.00 3.57
4040 4240 2.812011 GGTTACAATGCAGGAGAAACGT 59.188 45.455 0.00 0.00 0.00 3.99
4041 4241 2.811431 TGGTTACAATGCAGGAGAAACG 59.189 45.455 0.00 0.00 0.00 3.60
4042 4242 4.846779 TTGGTTACAATGCAGGAGAAAC 57.153 40.909 0.00 0.00 0.00 2.78
4043 4243 7.716799 ATATTTGGTTACAATGCAGGAGAAA 57.283 32.000 0.00 0.00 36.29 2.52
4044 4244 7.395772 TGAATATTTGGTTACAATGCAGGAGAA 59.604 33.333 0.00 0.00 36.29 2.87
4045 4245 6.889177 TGAATATTTGGTTACAATGCAGGAGA 59.111 34.615 0.00 0.00 36.29 3.71
4046 4246 7.099266 TGAATATTTGGTTACAATGCAGGAG 57.901 36.000 0.00 0.00 36.29 3.69
4047 4247 7.468494 CGATGAATATTTGGTTACAATGCAGGA 60.468 37.037 0.00 0.00 36.29 3.86
4053 4253 7.338196 TGACACCGATGAATATTTGGTTACAAT 59.662 33.333 0.00 0.00 36.29 2.71
4105 4305 3.372730 GGCATGCCCGCTTCAACA 61.373 61.111 27.24 0.00 0.00 3.33
4137 4341 8.256356 TCAAAATCACCAAAATAGAAGGGAAA 57.744 30.769 0.00 0.00 0.00 3.13
4181 4387 3.923273 AAGAAATGGGGAAAGGGTCTT 57.077 42.857 0.00 0.00 0.00 3.01
4247 4455 4.080582 ACTTCAAGTTTTGGAAAAAGGGGG 60.081 41.667 0.00 0.00 0.00 5.40
4251 4459 8.251026 ACCTAGAACTTCAAGTTTTGGAAAAAG 58.749 33.333 18.23 2.81 38.80 2.27
4257 4465 7.803279 ACTAACCTAGAACTTCAAGTTTTGG 57.197 36.000 3.76 9.48 38.80 3.28
4282 4518 8.750298 TGGTCAACCATAAAAGTTTGACTTAAA 58.250 29.630 11.83 0.00 42.01 1.52
4284 4520 7.883391 TGGTCAACCATAAAAGTTTGACTTA 57.117 32.000 11.83 1.56 42.01 2.24
4299 4535 9.757227 CAAATTTTCTATAAAGTTGGTCAACCA 57.243 29.630 9.90 0.00 45.94 3.67
4300 4536 8.708742 GCAAATTTTCTATAAAGTTGGTCAACC 58.291 33.333 9.90 0.00 42.06 3.77
4301 4537 9.476202 AGCAAATTTTCTATAAAGTTGGTCAAC 57.524 29.630 8.67 5.76 41.45 3.18
4461 4699 6.554334 TCAGTGTGAAAATACTAGGTTTGC 57.446 37.500 0.00 0.00 0.00 3.68
4462 4700 8.378172 TCTTCAGTGTGAAAATACTAGGTTTG 57.622 34.615 0.00 0.00 35.73 2.93
4463 4701 8.837389 GTTCTTCAGTGTGAAAATACTAGGTTT 58.163 33.333 0.00 0.00 35.73 3.27
4464 4702 7.990886 TGTTCTTCAGTGTGAAAATACTAGGTT 59.009 33.333 0.00 0.00 35.73 3.50
4465 4703 7.506114 TGTTCTTCAGTGTGAAAATACTAGGT 58.494 34.615 0.00 0.00 35.73 3.08
4466 4704 7.962964 TGTTCTTCAGTGTGAAAATACTAGG 57.037 36.000 0.00 0.00 35.73 3.02
4492 4757 9.391006 GGGAAAACATTACAGTATCACTATCAA 57.609 33.333 0.00 0.00 0.00 2.57
4495 4760 8.325787 TGTGGGAAAACATTACAGTATCACTAT 58.674 33.333 0.00 0.00 0.00 2.12
4496 4761 7.681679 TGTGGGAAAACATTACAGTATCACTA 58.318 34.615 0.00 0.00 0.00 2.74
4497 4762 6.539173 TGTGGGAAAACATTACAGTATCACT 58.461 36.000 0.00 0.00 0.00 3.41
4498 4763 6.811253 TGTGGGAAAACATTACAGTATCAC 57.189 37.500 0.00 0.00 0.00 3.06
4506 4774 6.653320 TGATACTCACTGTGGGAAAACATTAC 59.347 38.462 15.87 0.00 0.00 1.89
4507 4775 6.774673 TGATACTCACTGTGGGAAAACATTA 58.225 36.000 15.87 0.00 0.00 1.90
4511 4779 6.170506 TGTATGATACTCACTGTGGGAAAAC 58.829 40.000 15.87 1.63 0.00 2.43
4516 4784 4.160439 ACACTGTATGATACTCACTGTGGG 59.840 45.833 6.03 6.03 42.81 4.61
4522 4790 8.654230 ATTCATGAACACTGTATGATACTCAC 57.346 34.615 11.07 0.00 31.54 3.51
4548 4816 6.942576 AGAATTGAAGTACCAGCACAGTTAAT 59.057 34.615 0.00 0.00 0.00 1.40
4559 4827 9.958180 TCATGAAAATCTAGAATTGAAGTACCA 57.042 29.630 0.00 0.00 0.00 3.25
4572 4840 8.271487 CACATCACACGTATCATGAAAATCTAG 58.729 37.037 0.00 0.00 0.00 2.43
4579 4847 8.576442 AGTATATCACATCACACGTATCATGAA 58.424 33.333 0.00 0.00 0.00 2.57
4581 4849 7.809806 ACAGTATATCACATCACACGTATCATG 59.190 37.037 0.00 0.00 0.00 3.07
4586 4854 6.317893 AGACACAGTATATCACATCACACGTA 59.682 38.462 0.00 0.00 0.00 3.57
4601 4869 7.283354 TCACAATAGATCTTCGAGACACAGTAT 59.717 37.037 0.00 0.00 0.00 2.12
5106 5429 0.966179 GTTTGAGGGGGCGAATTGTT 59.034 50.000 0.00 0.00 0.00 2.83
5107 5430 1.241315 CGTTTGAGGGGGCGAATTGT 61.241 55.000 0.00 0.00 0.00 2.71
5108 5431 1.506262 CGTTTGAGGGGGCGAATTG 59.494 57.895 0.00 0.00 0.00 2.32
5163 5497 1.754803 AGATACGCGGATGTGGAGAAA 59.245 47.619 9.57 0.00 0.00 2.52
5313 7817 2.042104 AAGAACTTGTACGACGACGG 57.958 50.000 12.58 0.00 44.46 4.79
5389 7897 0.819259 AGAGCAAAAGCCAAGCACGA 60.819 50.000 0.00 0.00 0.00 4.35
5396 7904 1.032014 AAGCGAAAGAGCAAAAGCCA 58.968 45.000 0.00 0.00 40.15 4.75
5400 7908 1.269206 CCAGCAAGCGAAAGAGCAAAA 60.269 47.619 0.00 0.00 40.15 2.44
5491 7999 2.692557 CTCCTCTGATTCTGATGACGGT 59.307 50.000 0.00 0.00 0.00 4.83
5561 8097 1.742880 GACTCGCCAAGCTGATGCA 60.743 57.895 0.00 0.00 42.74 3.96
5564 8100 1.140589 CTCGACTCGCCAAGCTGAT 59.859 57.895 0.00 0.00 0.00 2.90
5608 8144 2.831894 TAGAGCAGTCGGAGCGGGAA 62.832 60.000 0.00 0.00 37.01 3.97
5701 8237 1.688735 CTCCTTGCATGGGTCTATCGA 59.311 52.381 17.95 0.00 0.00 3.59
5782 8321 1.201429 GGACAAGGGAGAGGAAGGCA 61.201 60.000 0.00 0.00 0.00 4.75
5787 8326 1.194781 GCAGTGGACAAGGGAGAGGA 61.195 60.000 0.00 0.00 0.00 3.71
5822 8361 4.760047 AGAATTGGAGGCGCGCGT 62.760 61.111 32.35 28.09 0.00 6.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.