Multiple sequence alignment - TraesCS2B01G409900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G409900 chr2B 100.000 4073 0 0 1 4073 583534818 583530746 0.000000e+00 7522.0
1 TraesCS2B01G409900 chr2B 91.866 209 9 5 3855 4055 559423082 559422874 6.660000e-73 285.0
2 TraesCS2B01G409900 chr2B 100.000 30 0 0 3603 3632 4796173 4796202 5.690000e-04 56.5
3 TraesCS2B01G409900 chr2D 93.971 3201 114 33 640 3771 496381144 496377954 0.000000e+00 4769.0
4 TraesCS2B01G409900 chr2D 82.222 405 37 15 227 626 496381584 496381210 2.360000e-82 316.0
5 TraesCS2B01G409900 chr2D 93.902 82 5 0 1 82 496446739 496446658 1.540000e-24 124.0
6 TraesCS2B01G409900 chr2D 93.617 47 3 0 192 238 496427150 496427104 2.030000e-08 71.3
7 TraesCS2B01G409900 chr2A 93.506 3003 99 22 639 3604 641602888 641599945 0.000000e+00 4377.0
8 TraesCS2B01G409900 chr2A 86.535 557 62 10 80 634 641603498 641602953 5.830000e-168 601.0
9 TraesCS2B01G409900 chr2A 94.118 68 4 0 14 81 641603929 641603862 2.000000e-18 104.0
10 TraesCS2B01G409900 chr5B 85.651 453 34 14 2604 3032 153193169 153193614 8.030000e-122 448.0
11 TraesCS2B01G409900 chr5B 89.458 332 19 9 892 1223 153173350 153173665 4.900000e-109 405.0
12 TraesCS2B01G409900 chr5B 89.700 233 24 0 2366 2598 153192756 153192988 8.560000e-77 298.0
13 TraesCS2B01G409900 chr5B 88.800 250 14 5 3822 4058 338912816 338912568 1.110000e-75 294.0
14 TraesCS2B01G409900 chr5B 92.040 201 8 3 3851 4043 436162621 436162821 4.010000e-70 276.0
15 TraesCS2B01G409900 chr5B 93.413 167 11 0 1921 2087 153182288 153182454 8.740000e-62 248.0
16 TraesCS2B01G409900 chr5B 94.872 156 8 0 2211 2366 153184769 153184924 1.130000e-60 244.0
17 TraesCS2B01G409900 chr5B 93.210 162 11 0 1650 1811 153181754 153181915 5.260000e-59 239.0
18 TraesCS2B01G409900 chr5B 96.875 128 4 0 2086 2213 153184485 153184612 8.870000e-52 215.0
19 TraesCS2B01G409900 chr5B 93.023 129 9 0 1524 1652 153181541 153181669 5.370000e-44 189.0
20 TraesCS2B01G409900 chr5B 93.220 59 4 0 1221 1279 153173793 153173851 2.020000e-13 87.9
21 TraesCS2B01G409900 chr5D 89.458 332 19 9 892 1223 181874307 181874622 4.900000e-109 405.0
22 TraesCS2B01G409900 chr5D 91.880 234 18 1 2604 2837 181882820 181883052 3.930000e-85 326.0
23 TraesCS2B01G409900 chr5D 90.558 233 22 0 2366 2598 181882407 181882639 3.950000e-80 309.0
24 TraesCS2B01G409900 chr5D 94.012 167 10 0 1921 2087 181877806 181877972 1.880000e-63 254.0
25 TraesCS2B01G409900 chr5D 93.827 162 10 0 1650 1811 181877272 181877433 1.130000e-60 244.0
26 TraesCS2B01G409900 chr5D 94.231 156 9 0 2211 2366 181880459 181880614 5.260000e-59 239.0
27 TraesCS2B01G409900 chr5D 96.875 128 4 0 2086 2213 181880174 181880301 8.870000e-52 215.0
28 TraesCS2B01G409900 chr5D 93.798 129 8 0 1524 1652 181877058 181877186 1.160000e-45 195.0
29 TraesCS2B01G409900 chr5D 96.923 65 2 0 1810 1874 181877553 181877617 4.300000e-20 110.0
30 TraesCS2B01G409900 chr5D 94.915 59 3 0 1221 1279 181874750 181874808 4.330000e-15 93.5
31 TraesCS2B01G409900 chr5D 100.000 29 0 0 3548 3576 448453690 448453662 2.000000e-03 54.7
32 TraesCS2B01G409900 chr5A 88.253 332 23 9 892 1223 210488224 210487909 2.300000e-102 383.0
33 TraesCS2B01G409900 chr5A 92.083 240 18 1 2604 2843 210478564 210478326 1.810000e-88 337.0
34 TraesCS2B01G409900 chr5A 88.281 256 15 6 3814 4055 547535009 547535263 3.980000e-75 292.0
35 TraesCS2B01G409900 chr5A 93.827 162 10 0 1650 1811 210485275 210485114 1.130000e-60 244.0
36 TraesCS2B01G409900 chr5A 94.231 156 9 0 2211 2366 210480927 210480772 5.260000e-59 239.0
37 TraesCS2B01G409900 chr5A 92.683 164 12 0 1924 2087 210484738 210484575 1.890000e-58 237.0
38 TraesCS2B01G409900 chr5A 97.656 128 3 0 2086 2213 210481211 210481084 1.910000e-53 220.0
39 TraesCS2B01G409900 chr5A 93.798 129 8 0 1524 1652 210485489 210485361 1.160000e-45 195.0
40 TraesCS2B01G409900 chr5A 94.915 59 3 0 1221 1279 210487781 210487723 4.330000e-15 93.5
41 TraesCS2B01G409900 chr4A 91.633 251 7 5 3819 4055 541675598 541675848 6.520000e-88 335.0
42 TraesCS2B01G409900 chr4A 89.712 243 16 4 3825 4060 645662068 645662308 6.620000e-78 302.0
43 TraesCS2B01G409900 chr3B 90.726 248 12 5 3818 4055 671569806 671570052 1.830000e-83 320.0
44 TraesCS2B01G409900 chr3B 90.040 251 10 5 3818 4055 127856841 127857089 1.100000e-80 311.0
45 TraesCS2B01G409900 chr3B 88.646 229 24 2 3827 4053 45190642 45190414 1.110000e-70 278.0
46 TraesCS2B01G409900 chr3B 92.727 165 12 0 3891 4055 823385532 823385696 5.260000e-59 239.0
47 TraesCS2B01G409900 chr3A 90.438 251 9 6 3821 4058 352503695 352503447 2.360000e-82 316.0
48 TraesCS2B01G409900 chr3A 90.541 222 7 3 3851 4059 309347533 309347753 8.620000e-72 281.0
49 TraesCS2B01G409900 chr3A 88.785 214 16 5 3851 4058 36952816 36952605 5.220000e-64 255.0
50 TraesCS2B01G409900 chr4B 88.346 266 16 6 3806 4058 610247856 610247593 5.110000e-79 305.0
51 TraesCS2B01G409900 chr4B 89.754 244 12 7 3822 4055 456348220 456348460 2.380000e-77 300.0
52 TraesCS2B01G409900 chr4B 88.672 256 14 5 3819 4059 561914613 561914358 8.560000e-77 298.0
53 TraesCS2B01G409900 chr6B 89.362 235 19 4 3822 4055 144896650 144896879 1.430000e-74 291.0
54 TraesCS2B01G409900 chr7A 87.747 253 16 6 3819 4058 151570959 151570709 8.620000e-72 281.0
55 TraesCS2B01G409900 chr7A 95.556 45 2 0 3549 3593 646551501 646551545 5.650000e-09 73.1
56 TraesCS2B01G409900 chr1B 93.443 122 6 2 3813 3933 328152390 328152270 3.230000e-41 180.0
57 TraesCS2B01G409900 chr1B 96.774 31 1 0 3602 3632 553144045 553144015 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G409900 chr2B 583530746 583534818 4072 True 7522.0000 7522 100.000000 1 4073 1 chr2B.!!$R2 4072
1 TraesCS2B01G409900 chr2D 496377954 496381584 3630 True 2542.5000 4769 88.096500 227 3771 2 chr2D.!!$R3 3544
2 TraesCS2B01G409900 chr2A 641599945 641603929 3984 True 1694.0000 4377 91.386333 14 3604 3 chr2A.!!$R1 3590
3 TraesCS2B01G409900 chr5B 153192756 153193614 858 False 373.0000 448 87.675500 2366 3032 2 chr5B.!!$F4 666
4 TraesCS2B01G409900 chr5B 153173350 153173851 501 False 246.4500 405 91.339000 892 1279 2 chr5B.!!$F2 387
5 TraesCS2B01G409900 chr5B 153181541 153184924 3383 False 227.0000 248 94.278600 1524 2366 5 chr5B.!!$F3 842
6 TraesCS2B01G409900 chr5D 181874307 181883052 8745 False 239.0500 405 93.647700 892 2837 10 chr5D.!!$F1 1945
7 TraesCS2B01G409900 chr5A 210478326 210488224 9898 True 243.5625 383 93.430750 892 2843 8 chr5A.!!$R1 1951

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
33 34 0.034863 TCGACCCCCTAAACATTGGC 60.035 55.0 0.00 0.00 0.00 4.52 F
91 457 0.170561 AAAGTCCTCGATGTCGGTCG 59.829 55.0 2.25 0.39 42.74 4.79 F
1518 3078 0.109272 CTGCTGCATTGCTTCCTGTG 60.109 55.0 10.49 0.00 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1368 2028 0.106149 AAAGCTCAACGAACCTCGGT 59.894 50.0 0.67 0.0 42.68 4.69 R
1776 4536 1.504359 TCGATTCCCACAAACGTGTC 58.496 50.0 0.00 0.0 35.07 3.67 R
3153 11878 0.676782 ACCTTATGTGCCCGCAGTTC 60.677 55.0 0.00 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.172717 AGATCGACCCCCTAAACATTGG 59.827 50.000 0.00 0.00 0.00 3.16
33 34 0.034863 TCGACCCCCTAAACATTGGC 60.035 55.000 0.00 0.00 0.00 4.52
47 48 2.965716 ATTGGCCGCATCCTAGTGCC 62.966 60.000 0.00 0.00 42.06 5.01
52 53 0.396435 CCGCATCCTAGTGCCCATTA 59.604 55.000 0.10 0.00 42.06 1.90
88 454 1.350193 CACAAAGTCCTCGATGTCGG 58.650 55.000 2.25 0.00 40.29 4.79
89 455 0.966920 ACAAAGTCCTCGATGTCGGT 59.033 50.000 2.25 0.00 40.29 4.69
91 457 0.170561 AAAGTCCTCGATGTCGGTCG 59.829 55.000 2.25 0.39 42.74 4.79
126 492 1.658686 AAAAGGCCGAACACGTTGCA 61.659 50.000 0.00 0.00 0.00 4.08
127 493 1.658686 AAAGGCCGAACACGTTGCAA 61.659 50.000 0.00 0.00 0.00 4.08
172 538 4.120331 GCGTGGCATGTGAAGGGC 62.120 66.667 8.75 0.00 0.00 5.19
173 539 2.672651 CGTGGCATGTGAAGGGCA 60.673 61.111 0.00 0.00 37.23 5.36
175 541 2.677524 TGGCATGTGAAGGGCAGC 60.678 61.111 0.00 0.00 34.37 5.25
194 560 1.667830 AGGCATGTCAACGTCCACG 60.668 57.895 0.00 0.00 46.33 4.94
224 590 3.984749 GATCGGAGAGGCGAGGGC 61.985 72.222 0.00 0.00 43.63 5.19
225 591 4.531426 ATCGGAGAGGCGAGGGCT 62.531 66.667 0.00 0.00 43.63 5.19
267 633 0.456628 GTCCCTTCTCCTGCTACGAC 59.543 60.000 0.00 0.00 0.00 4.34
268 634 0.683504 TCCCTTCTCCTGCTACGACC 60.684 60.000 0.00 0.00 0.00 4.79
337 703 1.452651 ATGCCTTGGTGGATGCGAG 60.453 57.895 0.00 0.00 38.35 5.03
360 726 3.540367 AAGTTGGTGGGTACGGCGG 62.540 63.158 13.24 0.00 0.00 6.13
382 748 3.361977 GTTGTTGGATGCGGCGGT 61.362 61.111 9.78 0.00 0.00 5.68
423 789 1.595382 GACCGAGAATGGGCGATGG 60.595 63.158 0.00 0.00 37.58 3.51
426 792 2.974698 GAGAATGGGCGATGGCGG 60.975 66.667 0.00 0.00 41.24 6.13
466 838 3.558109 GGGAAGAGTGTGAAAGGGAGAAG 60.558 52.174 0.00 0.00 0.00 2.85
582 954 3.541242 ATTTGGACTGGAAATGGGTCA 57.459 42.857 0.00 0.00 0.00 4.02
585 957 0.323629 GGACTGGAAATGGGTCACGA 59.676 55.000 0.00 0.00 0.00 4.35
587 959 0.762418 ACTGGAAATGGGTCACGACA 59.238 50.000 0.00 0.00 0.00 4.35
599 971 1.521423 GTCACGACAGACAGAAAACGG 59.479 52.381 0.00 0.00 38.40 4.44
634 1006 2.593148 TTGCGTCGGTGCATTGGT 60.593 55.556 3.38 0.00 45.78 3.67
635 1007 2.190170 TTGCGTCGGTGCATTGGTT 61.190 52.632 3.38 0.00 45.78 3.67
666 1098 6.602009 GGAGTTGGGCTTAGCTATTCTTAAAA 59.398 38.462 3.59 0.00 0.00 1.52
760 1197 2.839228 GGCATCCTATATCCTGGAGGT 58.161 52.381 1.52 0.00 36.61 3.85
853 1291 3.366739 ATTTCGACTCGACCCGGCC 62.367 63.158 0.00 0.00 34.89 6.13
976 1414 1.356398 CTAAACCTAGCCCCAACCCAA 59.644 52.381 0.00 0.00 0.00 4.12
1468 3028 1.315257 GGCATCAAATCCACTGCCGT 61.315 55.000 0.00 0.00 44.18 5.68
1518 3078 0.109272 CTGCTGCATTGCTTCCTGTG 60.109 55.000 10.49 0.00 0.00 3.66
1776 4536 6.260936 AGAATTCACATTTGGTATCTAAGGCG 59.739 38.462 8.44 0.00 0.00 5.52
1798 4558 3.651562 CACGTTTGTGGGAATCGATAC 57.348 47.619 0.00 0.00 42.59 2.24
1995 5018 7.174080 GCCCTTTCAAGATTAGATGATAGGAAC 59.826 40.741 12.07 3.06 43.41 3.62
2000 5023 4.160329 AGATTAGATGATAGGAACGGGCA 58.840 43.478 0.00 0.00 0.00 5.36
2184 8743 1.164411 TAACTGCAACATTGGCCGAG 58.836 50.000 0.00 0.00 0.00 4.63
2352 9071 3.250762 TGTCTGTGCAAAATACAGTGCTC 59.749 43.478 0.00 0.00 44.49 4.26
2513 11027 2.225068 ACACAGACACAAAGACGGAG 57.775 50.000 0.00 0.00 0.00 4.63
2598 11112 3.323751 ACCAAAGATCAAGCAAATGGC 57.676 42.857 0.00 0.00 45.30 4.40
2624 11312 5.512788 CAGTGCACGAAAATGATGGTTATTC 59.487 40.000 12.01 0.00 0.00 1.75
2808 11496 4.260784 CGAAGAAAACAAAGGACAGGTCTG 60.261 45.833 0.00 0.00 0.00 3.51
2817 11505 3.948086 GACAGGTCTGCCGTCGTCG 62.948 68.421 0.00 0.00 40.50 5.12
2837 11525 1.813513 CAGTCGAAGTTGCCCAAGAT 58.186 50.000 0.00 0.00 0.00 2.40
3015 11733 1.370900 GTTCCACGACACGTACGCT 60.371 57.895 16.72 0.00 38.32 5.07
3169 11894 1.017177 GTCGAACTGCGGGCACATAA 61.017 55.000 0.00 0.00 41.33 1.90
3194 11920 7.489160 AGGTGAAACTCTTTGGTATTGTTTTC 58.511 34.615 0.00 0.00 36.74 2.29
3387 12113 6.753279 AGTGTATACATCATTTGCATTTGTGC 59.247 34.615 9.18 0.00 0.00 4.57
3431 12157 2.290367 TCAAGTGCCTGTTTTGATGTCG 59.710 45.455 0.00 0.00 0.00 4.35
3478 12204 5.220662 GGTGTTGTGTGATTCTTCCATATCG 60.221 44.000 0.00 0.00 0.00 2.92
3481 12207 7.224753 GTGTTGTGTGATTCTTCCATATCGTAT 59.775 37.037 0.00 0.00 0.00 3.06
3522 12250 4.042062 AGTGTGATGGACTGAGAAAATGGA 59.958 41.667 0.00 0.00 0.00 3.41
3547 12275 4.718961 CTTTCTTTGGGAAGGAACTCTGA 58.281 43.478 0.00 0.00 38.49 3.27
3561 12289 3.603965 ACTCTGATACTCCCTCCGATT 57.396 47.619 0.00 0.00 0.00 3.34
3572 12300 9.535878 GATACTCCCTCCGATTCATATTAATTC 57.464 37.037 0.00 0.00 0.00 2.17
3574 12302 7.978925 ACTCCCTCCGATTCATATTAATTCTT 58.021 34.615 0.00 0.00 0.00 2.52
3576 12304 7.745717 TCCCTCCGATTCATATTAATTCTTGT 58.254 34.615 0.00 0.00 0.00 3.16
3612 12340 9.670442 ACAAAGTAATAGATAATACTCCCTCCA 57.330 33.333 0.00 0.00 31.31 3.86
3626 12354 9.853177 AATACTCCCTCCATAAAGAAACATAAG 57.147 33.333 0.00 0.00 0.00 1.73
3629 12357 7.182930 ACTCCCTCCATAAAGAAACATAAGAGT 59.817 37.037 0.00 0.00 0.00 3.24
3647 12403 6.541934 AAGAGTGTGGGAGTAGTTAATACC 57.458 41.667 0.00 0.00 34.67 2.73
3665 12422 1.337823 ACCGAGGGAGTGAATTCAACG 60.338 52.381 10.35 9.05 0.00 4.10
3670 12427 4.514401 GAGGGAGTGAATTCAACGGTATT 58.486 43.478 10.35 0.00 0.00 1.89
3677 12434 5.581085 AGTGAATTCAACGGTATTGCTACTC 59.419 40.000 10.35 0.00 0.00 2.59
3680 12437 2.463752 TCAACGGTATTGCTACTCCCT 58.536 47.619 0.00 0.00 0.00 4.20
3705 12462 5.665459 TGGTTGGGTTTACAAGTCAATTTG 58.335 37.500 0.00 0.00 0.00 2.32
3725 12482 8.773645 CAATTTGGGTTTTTAGGTCTTTGATTC 58.226 33.333 0.00 0.00 0.00 2.52
3771 12528 9.874205 CATATGTTTTGTTATCCAAATTGACCT 57.126 29.630 0.00 0.00 42.45 3.85
3774 12531 8.472007 TGTTTTGTTATCCAAATTGACCTACT 57.528 30.769 0.00 0.00 42.45 2.57
3775 12532 8.919145 TGTTTTGTTATCCAAATTGACCTACTT 58.081 29.630 0.00 0.00 42.45 2.24
3776 12533 9.191995 GTTTTGTTATCCAAATTGACCTACTTG 57.808 33.333 0.00 0.00 42.45 3.16
3777 12534 7.461182 TTGTTATCCAAATTGACCTACTTGG 57.539 36.000 0.00 0.00 39.80 3.61
3782 12539 4.462483 TCCAAATTGACCTACTTGGATTGC 59.538 41.667 0.00 0.00 41.83 3.56
3783 12540 4.463891 CCAAATTGACCTACTTGGATTGCT 59.536 41.667 0.00 0.00 40.72 3.91
3784 12541 5.404946 CAAATTGACCTACTTGGATTGCTG 58.595 41.667 0.00 0.00 39.71 4.41
3785 12542 2.787473 TGACCTACTTGGATTGCTGG 57.213 50.000 0.00 0.00 39.71 4.85
3786 12543 1.281867 TGACCTACTTGGATTGCTGGG 59.718 52.381 0.00 0.00 39.71 4.45
3787 12544 1.282157 GACCTACTTGGATTGCTGGGT 59.718 52.381 0.00 0.00 39.71 4.51
3788 12545 1.282157 ACCTACTTGGATTGCTGGGTC 59.718 52.381 0.00 0.00 39.71 4.46
3789 12546 1.656652 CTACTTGGATTGCTGGGTCG 58.343 55.000 0.00 0.00 0.00 4.79
3790 12547 0.392461 TACTTGGATTGCTGGGTCGC 60.392 55.000 0.00 0.00 0.00 5.19
3791 12548 2.745884 TTGGATTGCTGGGTCGCG 60.746 61.111 0.00 0.00 0.00 5.87
3792 12549 4.776322 TGGATTGCTGGGTCGCGG 62.776 66.667 6.13 0.00 0.00 6.46
3804 12561 3.759544 TCGCGGCTCGATAATCCT 58.240 55.556 6.13 0.00 43.16 3.24
3805 12562 2.936928 TCGCGGCTCGATAATCCTA 58.063 52.632 6.13 0.00 43.16 2.94
3806 12563 0.520404 TCGCGGCTCGATAATCCTAC 59.480 55.000 6.13 0.00 43.16 3.18
3807 12564 0.240145 CGCGGCTCGATAATCCTACA 59.760 55.000 0.00 0.00 41.67 2.74
3808 12565 1.135373 CGCGGCTCGATAATCCTACAT 60.135 52.381 0.00 0.00 41.67 2.29
3809 12566 2.531206 GCGGCTCGATAATCCTACATC 58.469 52.381 0.00 0.00 0.00 3.06
3810 12567 2.164624 GCGGCTCGATAATCCTACATCT 59.835 50.000 0.00 0.00 0.00 2.90
3811 12568 3.732471 GCGGCTCGATAATCCTACATCTC 60.732 52.174 0.00 0.00 0.00 2.75
3812 12569 3.486043 CGGCTCGATAATCCTACATCTCG 60.486 52.174 0.00 0.00 0.00 4.04
3813 12570 3.430931 GCTCGATAATCCTACATCTCGC 58.569 50.000 0.00 0.00 0.00 5.03
3814 12571 3.119814 GCTCGATAATCCTACATCTCGCA 60.120 47.826 0.00 0.00 0.00 5.10
3815 12572 4.616143 GCTCGATAATCCTACATCTCGCAA 60.616 45.833 0.00 0.00 0.00 4.85
3816 12573 5.048153 TCGATAATCCTACATCTCGCAAG 57.952 43.478 0.00 0.00 0.00 4.01
3817 12574 3.610242 CGATAATCCTACATCTCGCAAGC 59.390 47.826 0.00 0.00 37.18 4.01
3818 12575 4.617067 CGATAATCCTACATCTCGCAAGCT 60.617 45.833 0.00 0.00 37.18 3.74
3819 12576 3.550437 AATCCTACATCTCGCAAGCTT 57.450 42.857 0.00 0.00 37.18 3.74
3820 12577 4.672587 AATCCTACATCTCGCAAGCTTA 57.327 40.909 0.00 0.00 37.18 3.09
3821 12578 3.438297 TCCTACATCTCGCAAGCTTAC 57.562 47.619 0.00 0.00 37.18 2.34
3822 12579 3.024547 TCCTACATCTCGCAAGCTTACT 58.975 45.455 0.00 0.00 37.18 2.24
3823 12580 3.119291 CCTACATCTCGCAAGCTTACTG 58.881 50.000 0.00 0.00 37.18 2.74
3824 12581 2.751166 ACATCTCGCAAGCTTACTGT 57.249 45.000 0.00 0.00 37.18 3.55
3825 12582 3.045601 ACATCTCGCAAGCTTACTGTT 57.954 42.857 0.00 0.00 37.18 3.16
3826 12583 4.188247 ACATCTCGCAAGCTTACTGTTA 57.812 40.909 0.00 0.00 37.18 2.41
3827 12584 4.177026 ACATCTCGCAAGCTTACTGTTAG 58.823 43.478 0.00 0.00 37.18 2.34
3828 12585 4.082190 ACATCTCGCAAGCTTACTGTTAGA 60.082 41.667 0.00 0.00 37.18 2.10
3829 12586 4.098055 TCTCGCAAGCTTACTGTTAGAG 57.902 45.455 0.00 0.00 37.18 2.43
3830 12587 3.506455 TCTCGCAAGCTTACTGTTAGAGT 59.494 43.478 0.00 0.00 36.40 3.24
3831 12588 4.698780 TCTCGCAAGCTTACTGTTAGAGTA 59.301 41.667 0.00 0.00 34.56 2.59
3832 12589 4.730657 TCGCAAGCTTACTGTTAGAGTAC 58.269 43.478 0.00 0.00 35.19 2.73
3833 12590 3.542704 CGCAAGCTTACTGTTAGAGTACG 59.457 47.826 0.00 0.00 36.86 3.67
3834 12591 4.483311 GCAAGCTTACTGTTAGAGTACGT 58.517 43.478 0.00 0.00 36.86 3.57
3835 12592 5.634896 GCAAGCTTACTGTTAGAGTACGTA 58.365 41.667 0.00 0.00 36.86 3.57
3836 12593 6.088824 GCAAGCTTACTGTTAGAGTACGTAA 58.911 40.000 0.00 0.00 36.86 3.18
3837 12594 6.750963 GCAAGCTTACTGTTAGAGTACGTAAT 59.249 38.462 0.00 0.00 36.86 1.89
3838 12595 7.253684 GCAAGCTTACTGTTAGAGTACGTAATG 60.254 40.741 0.00 0.00 36.86 1.90
3839 12596 6.793349 AGCTTACTGTTAGAGTACGTAATGG 58.207 40.000 0.00 0.00 36.86 3.16
3840 12597 5.975939 GCTTACTGTTAGAGTACGTAATGGG 59.024 44.000 0.00 0.00 36.86 4.00
3841 12598 4.382345 ACTGTTAGAGTACGTAATGGGC 57.618 45.455 0.00 0.00 30.86 5.36
3842 12599 3.131755 ACTGTTAGAGTACGTAATGGGCC 59.868 47.826 0.00 0.00 30.86 5.80
3843 12600 3.368248 TGTTAGAGTACGTAATGGGCCT 58.632 45.455 4.53 0.00 0.00 5.19
3844 12601 4.535781 TGTTAGAGTACGTAATGGGCCTA 58.464 43.478 4.53 0.00 0.00 3.93
3845 12602 4.955450 TGTTAGAGTACGTAATGGGCCTAA 59.045 41.667 4.53 0.00 0.00 2.69
3846 12603 5.599656 TGTTAGAGTACGTAATGGGCCTAAT 59.400 40.000 4.53 0.00 0.00 1.73
3847 12604 4.602340 AGAGTACGTAATGGGCCTAATG 57.398 45.455 4.53 0.00 0.00 1.90
3848 12605 4.220724 AGAGTACGTAATGGGCCTAATGA 58.779 43.478 4.53 0.00 0.00 2.57
3849 12606 4.652421 AGAGTACGTAATGGGCCTAATGAA 59.348 41.667 4.53 0.00 0.00 2.57
3850 12607 4.700700 AGTACGTAATGGGCCTAATGAAC 58.299 43.478 4.53 0.00 0.00 3.18
3851 12608 2.927028 ACGTAATGGGCCTAATGAACC 58.073 47.619 4.53 0.00 0.00 3.62
3852 12609 2.227194 CGTAATGGGCCTAATGAACCC 58.773 52.381 4.53 0.00 44.52 4.11
3857 12614 1.963172 GGGCCTAATGAACCCGTTAG 58.037 55.000 0.84 0.00 40.11 2.34
3858 12615 1.211212 GGGCCTAATGAACCCGTTAGT 59.789 52.381 0.84 0.00 39.24 2.24
3859 12616 2.558378 GGCCTAATGAACCCGTTAGTC 58.442 52.381 0.00 0.00 39.24 2.59
3860 12617 2.169978 GGCCTAATGAACCCGTTAGTCT 59.830 50.000 0.00 0.00 39.24 3.24
3861 12618 3.370209 GGCCTAATGAACCCGTTAGTCTT 60.370 47.826 0.00 0.00 39.24 3.01
3862 12619 4.141869 GGCCTAATGAACCCGTTAGTCTTA 60.142 45.833 0.00 0.00 39.24 2.10
3863 12620 5.048507 GCCTAATGAACCCGTTAGTCTTAG 58.951 45.833 0.00 0.00 39.24 2.18
3864 12621 5.163478 GCCTAATGAACCCGTTAGTCTTAGA 60.163 44.000 0.00 0.00 39.24 2.10
3865 12622 6.462628 GCCTAATGAACCCGTTAGTCTTAGAT 60.463 42.308 0.00 0.00 39.24 1.98
3866 12623 7.498443 CCTAATGAACCCGTTAGTCTTAGATT 58.502 38.462 0.00 0.00 39.24 2.40
3867 12624 8.636213 CCTAATGAACCCGTTAGTCTTAGATTA 58.364 37.037 0.00 0.00 39.24 1.75
3870 12627 9.901172 AATGAACCCGTTAGTCTTAGATTAATT 57.099 29.630 0.71 0.00 0.00 1.40
3875 12632 9.638176 ACCCGTTAGTCTTAGATTAATTAGAGA 57.362 33.333 0.71 0.00 0.00 3.10
3888 12645 9.906660 AGATTAATTAGAGATAAGAGTCGCTTG 57.093 33.333 0.00 0.00 37.42 4.01
3889 12646 7.932120 TTAATTAGAGATAAGAGTCGCTTGC 57.068 36.000 0.00 0.00 37.42 4.01
3890 12647 5.782893 ATTAGAGATAAGAGTCGCTTGCT 57.217 39.130 0.00 0.00 37.42 3.91
3891 12648 5.584253 TTAGAGATAAGAGTCGCTTGCTT 57.416 39.130 0.00 0.00 37.42 3.91
3892 12649 6.694877 TTAGAGATAAGAGTCGCTTGCTTA 57.305 37.500 0.00 0.00 37.42 3.09
3893 12650 5.181690 AGAGATAAGAGTCGCTTGCTTAG 57.818 43.478 0.00 0.00 37.42 2.18
3894 12651 4.037446 AGAGATAAGAGTCGCTTGCTTAGG 59.963 45.833 0.00 0.00 37.42 2.69
3895 12652 2.961526 TAAGAGTCGCTTGCTTAGGG 57.038 50.000 0.00 0.00 37.42 3.53
3896 12653 0.250513 AAGAGTCGCTTGCTTAGGGG 59.749 55.000 0.00 0.00 37.41 4.79
3897 12654 0.905337 AGAGTCGCTTGCTTAGGGGT 60.905 55.000 4.21 0.00 37.41 4.95
3898 12655 0.460459 GAGTCGCTTGCTTAGGGGTC 60.460 60.000 4.21 0.00 37.41 4.46
3899 12656 1.192146 AGTCGCTTGCTTAGGGGTCA 61.192 55.000 4.21 0.00 37.41 4.02
3900 12657 0.321298 GTCGCTTGCTTAGGGGTCAA 60.321 55.000 4.21 0.00 37.41 3.18
3901 12658 0.036388 TCGCTTGCTTAGGGGTCAAG 60.036 55.000 0.00 0.00 39.95 3.02
3902 12659 0.321653 CGCTTGCTTAGGGGTCAAGT 60.322 55.000 0.00 0.00 39.36 3.16
3903 12660 1.066430 CGCTTGCTTAGGGGTCAAGTA 60.066 52.381 0.00 0.00 39.36 2.24
3904 12661 2.614481 CGCTTGCTTAGGGGTCAAGTAA 60.614 50.000 0.00 0.00 39.36 2.24
3905 12662 3.010420 GCTTGCTTAGGGGTCAAGTAAG 58.990 50.000 8.11 8.11 44.06 2.34
3906 12663 2.781681 TGCTTAGGGGTCAAGTAAGC 57.218 50.000 6.41 6.41 45.90 3.09
3907 12664 1.280998 TGCTTAGGGGTCAAGTAAGCC 59.719 52.381 10.06 0.00 45.37 4.35
3908 12665 1.560146 GCTTAGGGGTCAAGTAAGCCT 59.440 52.381 2.53 0.00 41.83 4.58
3909 12666 2.026169 GCTTAGGGGTCAAGTAAGCCTT 60.026 50.000 2.53 0.00 41.83 4.35
3921 12678 3.580084 AGCCTTGCTTGGGAGTCA 58.420 55.556 0.00 0.00 33.89 3.41
3922 12679 1.846261 AGCCTTGCTTGGGAGTCAA 59.154 52.632 0.00 0.00 33.89 3.18
3932 12689 4.625607 CTTGGGAGTCAAGTAAACCTCT 57.374 45.455 0.00 0.00 45.81 3.69
3933 12690 5.740290 CTTGGGAGTCAAGTAAACCTCTA 57.260 43.478 0.00 0.00 45.81 2.43
3934 12691 5.725362 CTTGGGAGTCAAGTAAACCTCTAG 58.275 45.833 0.00 0.00 45.81 2.43
3935 12692 5.006896 TGGGAGTCAAGTAAACCTCTAGA 57.993 43.478 0.00 0.00 0.00 2.43
3936 12693 5.399991 TGGGAGTCAAGTAAACCTCTAGAA 58.600 41.667 0.00 0.00 0.00 2.10
3937 12694 5.480772 TGGGAGTCAAGTAAACCTCTAGAAG 59.519 44.000 0.00 0.00 0.00 2.85
3938 12695 5.715753 GGGAGTCAAGTAAACCTCTAGAAGA 59.284 44.000 0.00 0.00 0.00 2.87
3939 12696 6.381707 GGGAGTCAAGTAAACCTCTAGAAGAT 59.618 42.308 0.00 0.00 0.00 2.40
3940 12697 7.262048 GGAGTCAAGTAAACCTCTAGAAGATG 58.738 42.308 0.00 0.00 0.00 2.90
3941 12698 7.093684 GGAGTCAAGTAAACCTCTAGAAGATGT 60.094 40.741 0.00 0.00 0.00 3.06
3942 12699 8.880991 AGTCAAGTAAACCTCTAGAAGATGTA 57.119 34.615 0.00 0.00 0.00 2.29
3943 12700 9.482175 AGTCAAGTAAACCTCTAGAAGATGTAT 57.518 33.333 0.00 0.00 0.00 2.29
3972 12729 9.911788 ATCTAATCAAGCAAGAATTAAGAAGGA 57.088 29.630 0.00 0.00 0.00 3.36
3973 12730 9.739276 TCTAATCAAGCAAGAATTAAGAAGGAA 57.261 29.630 0.00 0.00 0.00 3.36
3976 12733 9.866798 AATCAAGCAAGAATTAAGAAGGAAATC 57.133 29.630 0.00 0.00 0.00 2.17
3977 12734 8.641498 TCAAGCAAGAATTAAGAAGGAAATCT 57.359 30.769 0.00 0.00 0.00 2.40
3978 12735 8.734386 TCAAGCAAGAATTAAGAAGGAAATCTC 58.266 33.333 0.00 0.00 0.00 2.75
3979 12736 8.738106 CAAGCAAGAATTAAGAAGGAAATCTCT 58.262 33.333 0.00 0.00 0.00 3.10
3980 12737 8.876303 AGCAAGAATTAAGAAGGAAATCTCTT 57.124 30.769 0.00 0.00 0.00 2.85
3981 12738 8.955388 AGCAAGAATTAAGAAGGAAATCTCTTC 58.045 33.333 0.00 0.00 40.49 2.87
3982 12739 8.187480 GCAAGAATTAAGAAGGAAATCTCTTCC 58.813 37.037 0.00 0.00 40.94 3.46
3983 12740 8.681806 CAAGAATTAAGAAGGAAATCTCTTCCC 58.318 37.037 0.00 0.00 40.94 3.97
3984 12741 8.168905 AGAATTAAGAAGGAAATCTCTTCCCT 57.831 34.615 0.00 0.00 40.94 4.20
3985 12742 8.271458 AGAATTAAGAAGGAAATCTCTTCCCTC 58.729 37.037 0.00 0.00 40.94 4.30
3986 12743 7.763564 ATTAAGAAGGAAATCTCTTCCCTCT 57.236 36.000 0.00 0.00 40.20 3.69
3987 12744 7.575499 TTAAGAAGGAAATCTCTTCCCTCTT 57.425 36.000 17.31 17.31 45.97 2.85
3988 12745 5.434182 AGAAGGAAATCTCTTCCCTCTTG 57.566 43.478 0.00 0.00 36.28 3.02
3989 12746 4.849235 AGAAGGAAATCTCTTCCCTCTTGT 59.151 41.667 0.00 0.00 36.28 3.16
3990 12747 4.835284 AGGAAATCTCTTCCCTCTTGTC 57.165 45.455 0.00 0.00 39.39 3.18
3991 12748 3.521531 AGGAAATCTCTTCCCTCTTGTCC 59.478 47.826 0.00 0.00 39.39 4.02
3992 12749 3.526534 GAAATCTCTTCCCTCTTGTCCG 58.473 50.000 0.00 0.00 0.00 4.79
3993 12750 1.490574 ATCTCTTCCCTCTTGTCCGG 58.509 55.000 0.00 0.00 0.00 5.14
3994 12751 1.219393 CTCTTCCCTCTTGTCCGGC 59.781 63.158 0.00 0.00 0.00 6.13
3995 12752 2.245438 CTCTTCCCTCTTGTCCGGCC 62.245 65.000 0.00 0.00 0.00 6.13
3996 12753 3.665675 CTTCCCTCTTGTCCGGCCG 62.666 68.421 21.04 21.04 0.00 6.13
3998 12755 4.760047 CCCTCTTGTCCGGCCGTG 62.760 72.222 26.12 15.93 0.00 4.94
3999 12756 4.760047 CCTCTTGTCCGGCCGTGG 62.760 72.222 26.12 10.11 0.00 4.94
4000 12757 4.760047 CTCTTGTCCGGCCGTGGG 62.760 72.222 26.12 9.25 0.00 4.61
4037 12794 3.721706 CCCTCTTGCGCCCTCCTT 61.722 66.667 4.18 0.00 0.00 3.36
4038 12795 2.124942 CCTCTTGCGCCCTCCTTC 60.125 66.667 4.18 0.00 0.00 3.46
4039 12796 2.664081 CCTCTTGCGCCCTCCTTCT 61.664 63.158 4.18 0.00 0.00 2.85
4040 12797 1.330655 CCTCTTGCGCCCTCCTTCTA 61.331 60.000 4.18 0.00 0.00 2.10
4041 12798 0.103937 CTCTTGCGCCCTCCTTCTAG 59.896 60.000 4.18 0.00 0.00 2.43
4042 12799 1.522580 CTTGCGCCCTCCTTCTAGC 60.523 63.158 4.18 0.00 0.00 3.42
4043 12800 2.244117 CTTGCGCCCTCCTTCTAGCA 62.244 60.000 4.18 0.00 0.00 3.49
4044 12801 2.107953 GCGCCCTCCTTCTAGCAG 59.892 66.667 0.00 0.00 0.00 4.24
4045 12802 2.107953 CGCCCTCCTTCTAGCAGC 59.892 66.667 0.00 0.00 0.00 5.25
4046 12803 2.107953 GCCCTCCTTCTAGCAGCG 59.892 66.667 0.00 0.00 0.00 5.18
4047 12804 2.107953 CCCTCCTTCTAGCAGCGC 59.892 66.667 0.00 0.00 0.00 5.92
4048 12805 2.107953 CCTCCTTCTAGCAGCGCC 59.892 66.667 2.29 0.00 0.00 6.53
4049 12806 2.725312 CCTCCTTCTAGCAGCGCCA 61.725 63.158 2.29 0.00 0.00 5.69
4050 12807 1.445095 CTCCTTCTAGCAGCGCCAT 59.555 57.895 2.29 0.00 0.00 4.40
4051 12808 0.676184 CTCCTTCTAGCAGCGCCATA 59.324 55.000 2.29 0.00 0.00 2.74
4052 12809 1.069204 CTCCTTCTAGCAGCGCCATAA 59.931 52.381 2.29 0.00 0.00 1.90
4053 12810 1.202533 TCCTTCTAGCAGCGCCATAAC 60.203 52.381 2.29 0.00 0.00 1.89
4054 12811 1.473257 CCTTCTAGCAGCGCCATAACA 60.473 52.381 2.29 0.00 0.00 2.41
4055 12812 1.594862 CTTCTAGCAGCGCCATAACAC 59.405 52.381 2.29 0.00 0.00 3.32
4056 12813 0.824109 TCTAGCAGCGCCATAACACT 59.176 50.000 2.29 0.00 0.00 3.55
4057 12814 1.207089 TCTAGCAGCGCCATAACACTT 59.793 47.619 2.29 0.00 0.00 3.16
4058 12815 2.429250 TCTAGCAGCGCCATAACACTTA 59.571 45.455 2.29 0.00 0.00 2.24
4059 12816 1.369625 AGCAGCGCCATAACACTTAC 58.630 50.000 2.29 0.00 0.00 2.34
4060 12817 1.066143 AGCAGCGCCATAACACTTACT 60.066 47.619 2.29 0.00 0.00 2.24
4061 12818 1.737793 GCAGCGCCATAACACTTACTT 59.262 47.619 2.29 0.00 0.00 2.24
4062 12819 2.933906 GCAGCGCCATAACACTTACTTA 59.066 45.455 2.29 0.00 0.00 2.24
4063 12820 3.372822 GCAGCGCCATAACACTTACTTAA 59.627 43.478 2.29 0.00 0.00 1.85
4064 12821 4.142773 GCAGCGCCATAACACTTACTTAAA 60.143 41.667 2.29 0.00 0.00 1.52
4065 12822 5.321516 CAGCGCCATAACACTTACTTAAAC 58.678 41.667 2.29 0.00 0.00 2.01
4066 12823 5.121768 CAGCGCCATAACACTTACTTAAACT 59.878 40.000 2.29 0.00 0.00 2.66
4067 12824 5.350640 AGCGCCATAACACTTACTTAAACTC 59.649 40.000 2.29 0.00 0.00 3.01
4068 12825 5.446875 GCGCCATAACACTTACTTAAACTCC 60.447 44.000 0.00 0.00 0.00 3.85
4069 12826 5.873164 CGCCATAACACTTACTTAAACTCCT 59.127 40.000 0.00 0.00 0.00 3.69
4070 12827 7.037438 CGCCATAACACTTACTTAAACTCCTA 58.963 38.462 0.00 0.00 0.00 2.94
4071 12828 7.709613 CGCCATAACACTTACTTAAACTCCTAT 59.290 37.037 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.896465 GGGTCGATCTTAGGCTATGCT 59.104 52.381 0.00 0.00 0.00 3.79
1 2 1.066787 GGGGTCGATCTTAGGCTATGC 60.067 57.143 0.00 0.00 0.00 3.14
2 3 1.550976 GGGGGTCGATCTTAGGCTATG 59.449 57.143 0.00 0.00 0.00 2.23
3 4 1.433592 AGGGGGTCGATCTTAGGCTAT 59.566 52.381 0.00 0.00 0.00 2.97
4 5 0.858369 AGGGGGTCGATCTTAGGCTA 59.142 55.000 0.00 0.00 0.00 3.93
6 7 1.713297 TTAGGGGGTCGATCTTAGGC 58.287 55.000 0.00 0.00 0.00 3.93
7 8 3.036091 TGTTTAGGGGGTCGATCTTAGG 58.964 50.000 0.00 0.00 0.00 2.69
8 9 4.957684 ATGTTTAGGGGGTCGATCTTAG 57.042 45.455 0.00 0.00 0.00 2.18
9 10 4.141574 CCAATGTTTAGGGGGTCGATCTTA 60.142 45.833 0.00 0.00 0.00 2.10
10 11 3.371595 CCAATGTTTAGGGGGTCGATCTT 60.372 47.826 0.00 0.00 0.00 2.40
11 12 2.172717 CCAATGTTTAGGGGGTCGATCT 59.827 50.000 0.00 0.00 0.00 2.75
12 13 2.572290 CCAATGTTTAGGGGGTCGATC 58.428 52.381 0.00 0.00 0.00 3.69
47 48 5.065988 GTGGTTGCTACTATGGTGTTAATGG 59.934 44.000 0.00 0.00 0.00 3.16
52 53 3.780804 TGTGGTTGCTACTATGGTGTT 57.219 42.857 0.00 0.00 0.00 3.32
88 454 2.666812 CCCCCAAGGTACCACGAC 59.333 66.667 15.94 0.00 0.00 4.34
89 455 3.324108 GCCCCCAAGGTACCACGA 61.324 66.667 15.94 0.00 38.26 4.35
91 457 0.470268 TTTTGCCCCCAAGGTACCAC 60.470 55.000 15.94 0.00 38.26 4.16
158 524 2.677524 GCTGCCCTTCACATGCCA 60.678 61.111 0.00 0.00 0.00 4.92
160 526 2.707849 CCTGCTGCCCTTCACATGC 61.708 63.158 0.00 0.00 0.00 4.06
161 527 2.707849 GCCTGCTGCCCTTCACATG 61.708 63.158 0.00 0.00 0.00 3.21
172 538 1.499056 GACGTTGACATGCCTGCTG 59.501 57.895 0.00 0.00 0.00 4.41
173 539 1.672356 GGACGTTGACATGCCTGCT 60.672 57.895 0.00 0.00 0.00 4.24
175 541 1.868997 GTGGACGTTGACATGCCTG 59.131 57.895 0.00 0.00 0.00 4.85
212 578 4.828925 GCACAGCCCTCGCCTCTC 62.829 72.222 0.00 0.00 34.57 3.20
225 591 4.641645 CCAAGGGACGCTGGCACA 62.642 66.667 0.00 0.00 30.01 4.57
247 613 0.683504 TCGTAGCAGGAGAAGGGACC 60.684 60.000 0.00 0.00 0.00 4.46
304 670 3.069946 CATGGCCACCACCGCATT 61.070 61.111 8.16 0.00 35.80 3.56
337 703 1.381463 GTACCCACCAACTTCCCCC 59.619 63.158 0.00 0.00 0.00 5.40
360 726 1.883021 CCGCATCCAACAACTTCCC 59.117 57.895 0.00 0.00 0.00 3.97
437 803 2.103153 TCACACTCTTCCCACCTCTT 57.897 50.000 0.00 0.00 0.00 2.85
466 838 1.168714 GGTGACAGAGTGGCATTTCC 58.831 55.000 0.00 0.00 37.93 3.13
495 867 2.276740 CCTTGTCATCCCCCTGGC 59.723 66.667 0.00 0.00 0.00 4.85
582 954 1.849097 GTCCGTTTTCTGTCTGTCGT 58.151 50.000 0.00 0.00 0.00 4.34
585 957 0.878961 GGCGTCCGTTTTCTGTCTGT 60.879 55.000 0.00 0.00 0.00 3.41
587 959 1.301479 GGGCGTCCGTTTTCTGTCT 60.301 57.895 0.00 0.00 0.00 3.41
611 983 4.364409 GCACCGACGCAACCGAAC 62.364 66.667 0.00 0.00 38.29 3.95
612 984 4.893601 TGCACCGACGCAACCGAA 62.894 61.111 0.00 0.00 39.45 4.30
613 985 4.673298 ATGCACCGACGCAACCGA 62.673 61.111 2.77 0.00 46.87 4.69
614 986 3.722295 AATGCACCGACGCAACCG 61.722 61.111 2.77 0.00 46.87 4.44
615 987 2.126888 CAATGCACCGACGCAACC 60.127 61.111 2.77 0.00 46.87 3.77
616 988 2.126888 CCAATGCACCGACGCAAC 60.127 61.111 2.77 0.00 46.87 4.17
634 1006 0.766131 TAAGCCCAACTCCAACCGAA 59.234 50.000 0.00 0.00 0.00 4.30
635 1007 0.323629 CTAAGCCCAACTCCAACCGA 59.676 55.000 0.00 0.00 0.00 4.69
666 1098 3.186119 CACTGTGCGTCCAAATTTTTGT 58.814 40.909 0.00 0.00 36.45 2.83
674 1106 0.888736 CCATTCCACTGTGCGTCCAA 60.889 55.000 1.29 0.00 0.00 3.53
747 1184 2.290514 CGGTACCGACCTCCAGGATATA 60.291 54.545 30.64 0.00 44.46 0.86
748 1185 1.547223 CGGTACCGACCTCCAGGATAT 60.547 57.143 30.64 0.00 44.46 1.63
760 1197 1.246056 CCTGTTCAGTCCGGTACCGA 61.246 60.000 35.41 18.31 42.83 4.69
853 1291 1.860326 CAAACAAAGAAAAGCAGGCCG 59.140 47.619 0.00 0.00 0.00 6.13
976 1414 2.291043 CCGGCTTCTACTGGGTGGT 61.291 63.158 0.00 0.00 31.89 4.16
1212 1650 1.218316 GTCGAAGTCCTTGGCGGAT 59.782 57.895 0.00 0.00 45.44 4.18
1368 2028 0.106149 AAAGCTCAACGAACCTCGGT 59.894 50.000 0.67 0.00 42.68 4.69
1468 3028 2.181777 GACATCTGTGAGCGCCGA 59.818 61.111 2.29 0.00 0.00 5.54
1542 4126 6.919721 TGCATTTTCTAGAAATTTACGCCTT 58.080 32.000 18.37 0.00 0.00 4.35
1719 4479 3.321111 AGCTTGATATACGTTCGTCCCAT 59.679 43.478 0.00 0.00 0.00 4.00
1776 4536 1.504359 TCGATTCCCACAAACGTGTC 58.496 50.000 0.00 0.00 35.07 3.67
1798 4558 2.684843 GCTGGTCTTTGCGAGCCAG 61.685 63.158 17.87 17.87 45.10 4.85
2184 8743 1.003116 CTGACTAAATGCTGGCGATGC 60.003 52.381 0.00 0.00 0.00 3.91
2352 9071 2.351111 GCTGCTTTCTTCTGATCTTCCG 59.649 50.000 0.00 0.00 0.00 4.30
2598 11112 2.485426 ACCATCATTTTCGTGCACTGAG 59.515 45.455 16.19 0.00 0.00 3.35
2624 11312 2.290531 ACGTCTGATGTCATGAGCAG 57.709 50.000 11.90 11.90 0.00 4.24
2817 11505 0.884704 TCTTGGGCAACTTCGACTGC 60.885 55.000 5.03 5.03 37.86 4.40
2837 11525 4.764771 GGGCTGCAGGCATTGGGA 62.765 66.667 37.36 0.00 44.01 4.37
3015 11733 1.508632 GTGCAAGCAAGTCCTCGTAA 58.491 50.000 0.00 0.00 0.00 3.18
3137 11855 3.126858 GCAGTTCGACATAAGCCATCAAA 59.873 43.478 0.00 0.00 0.00 2.69
3138 11856 2.677836 GCAGTTCGACATAAGCCATCAA 59.322 45.455 0.00 0.00 0.00 2.57
3145 11870 0.739462 TGCCCGCAGTTCGACATAAG 60.739 55.000 0.00 0.00 41.67 1.73
3153 11878 0.676782 ACCTTATGTGCCCGCAGTTC 60.677 55.000 0.00 0.00 0.00 3.01
3169 11894 7.417456 GGAAAACAATACCAAAGAGTTTCACCT 60.417 37.037 0.00 0.00 31.80 4.00
3185 11911 4.646945 TGCAACTCAACCAGGAAAACAATA 59.353 37.500 0.00 0.00 0.00 1.90
3194 11920 1.180456 TGGCATGCAACTCAACCAGG 61.180 55.000 21.36 0.00 32.92 4.45
3431 12157 2.664916 CAGCATAACAACTGGCACAAC 58.335 47.619 0.00 0.00 38.70 3.32
3478 12204 4.100189 ACTCCAATAGCCTGACAGTCATAC 59.900 45.833 2.97 0.00 0.00 2.39
3481 12207 2.234661 CACTCCAATAGCCTGACAGTCA 59.765 50.000 2.48 2.48 0.00 3.41
3522 12250 3.829026 GAGTTCCTTCCCAAAGAAAGCAT 59.171 43.478 0.00 0.00 34.14 3.79
3547 12275 9.273137 AGAATTAATATGAATCGGAGGGAGTAT 57.727 33.333 0.00 0.00 0.00 2.12
3604 12332 7.497249 CACTCTTATGTTTCTTTATGGAGGGAG 59.503 40.741 0.00 0.00 0.00 4.30
3612 12340 7.690256 ACTCCCACACTCTTATGTTTCTTTAT 58.310 34.615 0.00 0.00 0.00 1.40
3621 12349 8.142551 GGTATTAACTACTCCCACACTCTTATG 58.857 40.741 0.00 0.00 0.00 1.90
3626 12354 4.641989 TCGGTATTAACTACTCCCACACTC 59.358 45.833 0.00 0.00 0.00 3.51
3629 12357 3.956199 CCTCGGTATTAACTACTCCCACA 59.044 47.826 0.00 0.00 0.00 4.17
3647 12403 1.337823 ACCGTTGAATTCACTCCCTCG 60.338 52.381 7.89 6.52 0.00 4.63
3665 12422 2.399580 ACCAGAGGGAGTAGCAATACC 58.600 52.381 0.00 0.00 38.05 2.73
3670 12427 2.683916 CCAACCAGAGGGAGTAGCA 58.316 57.895 0.00 0.00 38.05 3.49
3680 12437 3.935818 TGACTTGTAAACCCAACCAGA 57.064 42.857 0.00 0.00 0.00 3.86
3705 12462 6.993079 ACATGAATCAAAGACCTAAAAACCC 58.007 36.000 0.00 0.00 0.00 4.11
3771 12528 0.392461 GCGACCCAGCAATCCAAGTA 60.392 55.000 0.00 0.00 37.05 2.24
3772 12529 1.675641 GCGACCCAGCAATCCAAGT 60.676 57.895 0.00 0.00 37.05 3.16
3773 12530 2.753966 CGCGACCCAGCAATCCAAG 61.754 63.158 0.00 0.00 36.85 3.61
3774 12531 2.745884 CGCGACCCAGCAATCCAA 60.746 61.111 0.00 0.00 36.85 3.53
3775 12532 4.776322 CCGCGACCCAGCAATCCA 62.776 66.667 8.23 0.00 36.85 3.41
3788 12545 0.240145 TGTAGGATTATCGAGCCGCG 59.760 55.000 0.00 0.00 39.39 6.46
3789 12546 2.164624 AGATGTAGGATTATCGAGCCGC 59.835 50.000 0.00 0.00 39.39 6.53
3790 12547 3.486043 CGAGATGTAGGATTATCGAGCCG 60.486 52.174 0.00 0.00 39.39 5.52
3791 12548 3.732471 GCGAGATGTAGGATTATCGAGCC 60.732 52.174 0.00 0.00 32.13 4.70
3792 12549 3.119814 TGCGAGATGTAGGATTATCGAGC 60.120 47.826 0.00 0.00 34.01 5.03
3793 12550 4.686839 TGCGAGATGTAGGATTATCGAG 57.313 45.455 0.00 0.00 32.13 4.04
3794 12551 4.616143 GCTTGCGAGATGTAGGATTATCGA 60.616 45.833 4.70 0.00 32.13 3.59
3795 12552 3.610242 GCTTGCGAGATGTAGGATTATCG 59.390 47.826 4.70 0.00 0.00 2.92
3796 12553 4.815269 AGCTTGCGAGATGTAGGATTATC 58.185 43.478 4.70 0.00 0.00 1.75
3797 12554 4.881019 AGCTTGCGAGATGTAGGATTAT 57.119 40.909 4.70 0.00 0.00 1.28
3798 12555 4.672587 AAGCTTGCGAGATGTAGGATTA 57.327 40.909 4.70 0.00 0.00 1.75
3799 12556 3.550437 AAGCTTGCGAGATGTAGGATT 57.450 42.857 4.70 0.00 0.00 3.01
3800 12557 3.639094 AGTAAGCTTGCGAGATGTAGGAT 59.361 43.478 9.86 0.00 0.00 3.24
3801 12558 3.024547 AGTAAGCTTGCGAGATGTAGGA 58.975 45.455 9.86 0.00 0.00 2.94
3802 12559 3.119291 CAGTAAGCTTGCGAGATGTAGG 58.881 50.000 9.86 0.00 0.00 3.18
3803 12560 3.775202 ACAGTAAGCTTGCGAGATGTAG 58.225 45.455 9.86 0.00 0.00 2.74
3804 12561 3.868757 ACAGTAAGCTTGCGAGATGTA 57.131 42.857 9.86 0.00 0.00 2.29
3805 12562 2.751166 ACAGTAAGCTTGCGAGATGT 57.249 45.000 9.86 5.25 0.00 3.06
3806 12563 4.424626 TCTAACAGTAAGCTTGCGAGATG 58.575 43.478 9.86 4.56 0.00 2.90
3807 12564 4.158764 ACTCTAACAGTAAGCTTGCGAGAT 59.841 41.667 18.30 0.00 31.37 2.75
3808 12565 3.506455 ACTCTAACAGTAAGCTTGCGAGA 59.494 43.478 18.30 13.87 31.37 4.04
3809 12566 3.839293 ACTCTAACAGTAAGCTTGCGAG 58.161 45.455 9.86 11.53 31.37 5.03
3810 12567 3.936372 ACTCTAACAGTAAGCTTGCGA 57.064 42.857 9.86 0.00 31.37 5.10
3811 12568 3.542704 CGTACTCTAACAGTAAGCTTGCG 59.457 47.826 9.86 7.02 39.44 4.85
3812 12569 4.483311 ACGTACTCTAACAGTAAGCTTGC 58.517 43.478 9.86 8.07 39.89 4.01
3813 12570 7.220300 CCATTACGTACTCTAACAGTAAGCTTG 59.780 40.741 9.86 0.00 39.89 4.01
3814 12571 7.256286 CCATTACGTACTCTAACAGTAAGCTT 58.744 38.462 3.48 3.48 39.89 3.74
3815 12572 6.183360 CCCATTACGTACTCTAACAGTAAGCT 60.183 42.308 0.00 0.00 39.89 3.74
3816 12573 5.975939 CCCATTACGTACTCTAACAGTAAGC 59.024 44.000 0.00 0.00 39.89 3.09
3817 12574 5.975939 GCCCATTACGTACTCTAACAGTAAG 59.024 44.000 0.00 0.00 39.44 2.34
3818 12575 5.163519 GGCCCATTACGTACTCTAACAGTAA 60.164 44.000 0.00 0.00 39.44 2.24
3819 12576 4.339247 GGCCCATTACGTACTCTAACAGTA 59.661 45.833 0.00 0.00 36.43 2.74
3820 12577 3.131755 GGCCCATTACGTACTCTAACAGT 59.868 47.826 0.00 0.00 39.41 3.55
3821 12578 3.383825 AGGCCCATTACGTACTCTAACAG 59.616 47.826 0.00 0.00 0.00 3.16
3822 12579 3.368248 AGGCCCATTACGTACTCTAACA 58.632 45.455 0.00 0.00 0.00 2.41
3823 12580 5.520376 TTAGGCCCATTACGTACTCTAAC 57.480 43.478 0.00 0.00 0.00 2.34
3824 12581 5.834742 TCATTAGGCCCATTACGTACTCTAA 59.165 40.000 0.00 0.00 0.00 2.10
3825 12582 5.387788 TCATTAGGCCCATTACGTACTCTA 58.612 41.667 0.00 0.00 0.00 2.43
3826 12583 4.220724 TCATTAGGCCCATTACGTACTCT 58.779 43.478 0.00 0.00 0.00 3.24
3827 12584 4.595762 TCATTAGGCCCATTACGTACTC 57.404 45.455 0.00 0.00 0.00 2.59
3828 12585 4.443881 GGTTCATTAGGCCCATTACGTACT 60.444 45.833 0.00 0.00 0.00 2.73
3829 12586 3.811497 GGTTCATTAGGCCCATTACGTAC 59.189 47.826 0.00 0.00 0.00 3.67
3830 12587 3.181452 GGGTTCATTAGGCCCATTACGTA 60.181 47.826 0.00 0.00 41.93 3.57
3831 12588 2.422377 GGGTTCATTAGGCCCATTACGT 60.422 50.000 0.00 0.00 41.93 3.57
3832 12589 2.227194 GGGTTCATTAGGCCCATTACG 58.773 52.381 0.00 0.00 41.93 3.18
3833 12590 2.227194 CGGGTTCATTAGGCCCATTAC 58.773 52.381 0.00 0.00 42.44 1.89
3834 12591 1.847737 ACGGGTTCATTAGGCCCATTA 59.152 47.619 0.00 0.00 42.44 1.90
3835 12592 0.629058 ACGGGTTCATTAGGCCCATT 59.371 50.000 0.00 0.00 42.44 3.16
3836 12593 0.629058 AACGGGTTCATTAGGCCCAT 59.371 50.000 0.00 0.00 42.44 4.00
3837 12594 1.210967 CTAACGGGTTCATTAGGCCCA 59.789 52.381 0.00 0.00 42.44 5.36
3838 12595 1.211212 ACTAACGGGTTCATTAGGCCC 59.789 52.381 0.00 0.00 39.03 5.80
3839 12596 2.169978 AGACTAACGGGTTCATTAGGCC 59.830 50.000 0.00 0.00 37.15 5.19
3840 12597 3.538634 AGACTAACGGGTTCATTAGGC 57.461 47.619 0.00 0.00 36.78 3.93
3841 12598 6.461110 TCTAAGACTAACGGGTTCATTAGG 57.539 41.667 0.00 0.00 33.47 2.69
3844 12601 9.901172 AATTAATCTAAGACTAACGGGTTCATT 57.099 29.630 0.00 0.00 0.00 2.57
3849 12606 9.638176 TCTCTAATTAATCTAAGACTAACGGGT 57.362 33.333 0.00 0.00 0.00 5.28
3862 12619 9.906660 CAAGCGACTCTTATCTCTAATTAATCT 57.093 33.333 0.00 0.00 32.74 2.40
3863 12620 8.643752 GCAAGCGACTCTTATCTCTAATTAATC 58.356 37.037 0.00 0.00 32.74 1.75
3864 12621 8.364142 AGCAAGCGACTCTTATCTCTAATTAAT 58.636 33.333 0.00 0.00 32.74 1.40
3865 12622 7.717568 AGCAAGCGACTCTTATCTCTAATTAA 58.282 34.615 0.00 0.00 32.74 1.40
3866 12623 7.278461 AGCAAGCGACTCTTATCTCTAATTA 57.722 36.000 0.00 0.00 32.74 1.40
3867 12624 6.155475 AGCAAGCGACTCTTATCTCTAATT 57.845 37.500 0.00 0.00 32.74 1.40
3868 12625 5.782893 AGCAAGCGACTCTTATCTCTAAT 57.217 39.130 0.00 0.00 32.74 1.73
3869 12626 5.584253 AAGCAAGCGACTCTTATCTCTAA 57.416 39.130 0.00 0.00 32.74 2.10
3870 12627 5.239744 CCTAAGCAAGCGACTCTTATCTCTA 59.760 44.000 0.00 0.00 32.74 2.43
3871 12628 4.037446 CCTAAGCAAGCGACTCTTATCTCT 59.963 45.833 0.00 0.00 32.74 3.10
3872 12629 4.295051 CCTAAGCAAGCGACTCTTATCTC 58.705 47.826 0.00 0.00 32.74 2.75
3873 12630 3.068873 CCCTAAGCAAGCGACTCTTATCT 59.931 47.826 0.00 0.00 32.74 1.98
3874 12631 3.385577 CCCTAAGCAAGCGACTCTTATC 58.614 50.000 0.00 0.00 32.74 1.75
3875 12632 2.103263 CCCCTAAGCAAGCGACTCTTAT 59.897 50.000 0.00 0.00 32.74 1.73
3876 12633 1.480954 CCCCTAAGCAAGCGACTCTTA 59.519 52.381 0.00 0.00 32.74 2.10
3877 12634 0.250513 CCCCTAAGCAAGCGACTCTT 59.749 55.000 0.00 0.00 34.78 2.85
3878 12635 0.905337 ACCCCTAAGCAAGCGACTCT 60.905 55.000 0.00 0.00 0.00 3.24
3879 12636 0.460459 GACCCCTAAGCAAGCGACTC 60.460 60.000 0.00 0.00 0.00 3.36
3880 12637 1.192146 TGACCCCTAAGCAAGCGACT 61.192 55.000 0.00 0.00 0.00 4.18
3881 12638 0.321298 TTGACCCCTAAGCAAGCGAC 60.321 55.000 0.00 0.00 0.00 5.19
3882 12639 0.036388 CTTGACCCCTAAGCAAGCGA 60.036 55.000 0.00 0.00 33.48 4.93
3883 12640 0.321653 ACTTGACCCCTAAGCAAGCG 60.322 55.000 0.00 0.00 41.97 4.68
3884 12641 2.781681 TACTTGACCCCTAAGCAAGC 57.218 50.000 0.00 0.00 41.97 4.01
3885 12642 3.010420 GCTTACTTGACCCCTAAGCAAG 58.990 50.000 0.00 0.00 41.32 4.01
3886 12643 2.290705 GGCTTACTTGACCCCTAAGCAA 60.291 50.000 10.04 0.00 42.79 3.91
3887 12644 1.280998 GGCTTACTTGACCCCTAAGCA 59.719 52.381 10.04 0.00 42.79 3.91
3888 12645 1.560146 AGGCTTACTTGACCCCTAAGC 59.440 52.381 0.00 0.00 41.07 3.09
3904 12661 0.251077 CTTGACTCCCAAGCAAGGCT 60.251 55.000 0.00 0.00 44.90 4.58
3905 12662 2.261215 CTTGACTCCCAAGCAAGGC 58.739 57.895 0.00 0.00 44.90 4.35
3912 12669 5.399991 TCTAGAGGTTTACTTGACTCCCAA 58.600 41.667 0.00 0.00 0.00 4.12
3913 12670 5.006896 TCTAGAGGTTTACTTGACTCCCA 57.993 43.478 0.00 0.00 0.00 4.37
3914 12671 5.715753 TCTTCTAGAGGTTTACTTGACTCCC 59.284 44.000 1.31 0.00 0.00 4.30
3915 12672 6.837471 TCTTCTAGAGGTTTACTTGACTCC 57.163 41.667 1.31 0.00 0.00 3.85
3916 12673 7.832769 ACATCTTCTAGAGGTTTACTTGACTC 58.167 38.462 1.31 0.00 35.48 3.36
3917 12674 7.784470 ACATCTTCTAGAGGTTTACTTGACT 57.216 36.000 1.31 0.00 35.48 3.41
3946 12703 9.911788 TCCTTCTTAATTCTTGCTTGATTAGAT 57.088 29.630 0.00 0.00 0.00 1.98
3947 12704 9.739276 TTCCTTCTTAATTCTTGCTTGATTAGA 57.261 29.630 0.00 0.00 0.00 2.10
3950 12707 9.866798 GATTTCCTTCTTAATTCTTGCTTGATT 57.133 29.630 0.00 0.00 0.00 2.57
3951 12708 9.252635 AGATTTCCTTCTTAATTCTTGCTTGAT 57.747 29.630 0.00 0.00 0.00 2.57
3952 12709 8.641498 AGATTTCCTTCTTAATTCTTGCTTGA 57.359 30.769 0.00 0.00 0.00 3.02
3953 12710 8.738106 AGAGATTTCCTTCTTAATTCTTGCTTG 58.262 33.333 0.00 0.00 0.00 4.01
3954 12711 8.876303 AGAGATTTCCTTCTTAATTCTTGCTT 57.124 30.769 0.00 0.00 0.00 3.91
3955 12712 8.876303 AAGAGATTTCCTTCTTAATTCTTGCT 57.124 30.769 0.00 0.00 0.00 3.91
3956 12713 8.187480 GGAAGAGATTTCCTTCTTAATTCTTGC 58.813 37.037 0.00 0.00 39.80 4.01
3957 12714 8.681806 GGGAAGAGATTTCCTTCTTAATTCTTG 58.318 37.037 5.96 0.00 39.80 3.02
3958 12715 8.619281 AGGGAAGAGATTTCCTTCTTAATTCTT 58.381 33.333 5.96 0.00 39.80 2.52
3959 12716 8.168905 AGGGAAGAGATTTCCTTCTTAATTCT 57.831 34.615 5.96 0.00 39.80 2.40
3960 12717 8.445275 GAGGGAAGAGATTTCCTTCTTAATTC 57.555 38.462 9.92 0.00 40.37 2.17
3967 12724 5.172687 ACAAGAGGGAAGAGATTTCCTTC 57.827 43.478 9.33 9.33 42.87 3.46
3968 12725 4.018870 GGACAAGAGGGAAGAGATTTCCTT 60.019 45.833 5.96 0.00 38.61 3.36
3969 12726 3.521531 GGACAAGAGGGAAGAGATTTCCT 59.478 47.826 5.96 0.00 38.61 3.36
3970 12727 3.680196 CGGACAAGAGGGAAGAGATTTCC 60.680 52.174 0.00 0.00 37.86 3.13
3971 12728 3.526534 CGGACAAGAGGGAAGAGATTTC 58.473 50.000 0.00 0.00 0.00 2.17
3972 12729 2.237392 CCGGACAAGAGGGAAGAGATTT 59.763 50.000 0.00 0.00 0.00 2.17
3973 12730 1.834263 CCGGACAAGAGGGAAGAGATT 59.166 52.381 0.00 0.00 0.00 2.40
3974 12731 1.490574 CCGGACAAGAGGGAAGAGAT 58.509 55.000 0.00 0.00 0.00 2.75
3975 12732 1.258445 GCCGGACAAGAGGGAAGAGA 61.258 60.000 5.05 0.00 0.00 3.10
3976 12733 1.219393 GCCGGACAAGAGGGAAGAG 59.781 63.158 5.05 0.00 0.00 2.85
3977 12734 2.291043 GGCCGGACAAGAGGGAAGA 61.291 63.158 5.05 0.00 0.00 2.87
3978 12735 2.269241 GGCCGGACAAGAGGGAAG 59.731 66.667 5.05 0.00 0.00 3.46
3979 12736 3.702048 CGGCCGGACAAGAGGGAA 61.702 66.667 20.10 0.00 0.00 3.97
3981 12738 4.760047 CACGGCCGGACAAGAGGG 62.760 72.222 31.76 2.89 0.00 4.30
3982 12739 4.760047 CCACGGCCGGACAAGAGG 62.760 72.222 31.76 14.74 0.00 3.69
3983 12740 4.760047 CCCACGGCCGGACAAGAG 62.760 72.222 31.76 9.12 0.00 2.85
4020 12777 3.689002 GAAGGAGGGCGCAAGAGGG 62.689 68.421 10.83 0.00 43.02 4.30
4021 12778 1.330655 TAGAAGGAGGGCGCAAGAGG 61.331 60.000 10.83 0.00 43.02 3.69
4022 12779 0.103937 CTAGAAGGAGGGCGCAAGAG 59.896 60.000 10.83 0.00 43.02 2.85
4023 12780 1.961180 GCTAGAAGGAGGGCGCAAGA 61.961 60.000 10.83 0.00 43.02 3.02
4024 12781 1.522580 GCTAGAAGGAGGGCGCAAG 60.523 63.158 10.83 0.00 43.44 4.01
4025 12782 2.244117 CTGCTAGAAGGAGGGCGCAA 62.244 60.000 10.83 0.00 29.18 4.85
4026 12783 2.683572 TGCTAGAAGGAGGGCGCA 60.684 61.111 10.83 0.00 0.00 6.09
4027 12784 2.107953 CTGCTAGAAGGAGGGCGC 59.892 66.667 0.00 0.00 29.18 6.53
4028 12785 2.107953 GCTGCTAGAAGGAGGGCG 59.892 66.667 0.00 0.00 33.92 6.13
4029 12786 2.107953 CGCTGCTAGAAGGAGGGC 59.892 66.667 0.00 0.00 39.48 5.19
4030 12787 2.107953 GCGCTGCTAGAAGGAGGG 59.892 66.667 0.00 7.93 46.69 4.30
4031 12788 2.037620 ATGGCGCTGCTAGAAGGAGG 62.038 60.000 7.64 0.00 33.92 4.30
4032 12789 0.676184 TATGGCGCTGCTAGAAGGAG 59.324 55.000 7.64 0.00 36.68 3.69
4033 12790 1.119684 TTATGGCGCTGCTAGAAGGA 58.880 50.000 7.64 0.00 0.00 3.36
4034 12791 1.221414 GTTATGGCGCTGCTAGAAGG 58.779 55.000 7.64 0.00 0.00 3.46
4035 12792 1.594862 GTGTTATGGCGCTGCTAGAAG 59.405 52.381 7.64 0.00 0.00 2.85
4036 12793 1.207089 AGTGTTATGGCGCTGCTAGAA 59.793 47.619 7.64 0.00 0.00 2.10
4037 12794 0.824109 AGTGTTATGGCGCTGCTAGA 59.176 50.000 7.64 0.00 0.00 2.43
4038 12795 1.656652 AAGTGTTATGGCGCTGCTAG 58.343 50.000 7.64 0.00 0.00 3.42
4039 12796 2.167693 AGTAAGTGTTATGGCGCTGCTA 59.832 45.455 7.64 0.00 0.00 3.49
4040 12797 1.066143 AGTAAGTGTTATGGCGCTGCT 60.066 47.619 7.64 0.00 0.00 4.24
4041 12798 1.369625 AGTAAGTGTTATGGCGCTGC 58.630 50.000 7.64 0.00 0.00 5.25
4042 12799 5.121768 AGTTTAAGTAAGTGTTATGGCGCTG 59.878 40.000 7.64 0.00 0.00 5.18
4043 12800 5.243207 AGTTTAAGTAAGTGTTATGGCGCT 58.757 37.500 7.64 0.00 0.00 5.92
4044 12801 5.446875 GGAGTTTAAGTAAGTGTTATGGCGC 60.447 44.000 0.00 0.00 0.00 6.53
4045 12802 5.873164 AGGAGTTTAAGTAAGTGTTATGGCG 59.127 40.000 0.00 0.00 0.00 5.69
4046 12803 8.959705 ATAGGAGTTTAAGTAAGTGTTATGGC 57.040 34.615 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.