Multiple sequence alignment - TraesCS2B01G409200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G409200 chr2B 100.000 5826 0 0 1 5826 582644095 582649920 0.000000e+00 10759.0
1 TraesCS2B01G409200 chr2B 81.354 783 99 21 5006 5745 331223566 331222788 1.400000e-165 593.0
2 TraesCS2B01G409200 chr2B 93.069 101 5 2 780 878 536806587 536806687 4.700000e-31 147.0
3 TraesCS2B01G409200 chr2B 90.476 105 6 4 781 883 166044568 166044466 1.020000e-27 135.0
4 TraesCS2B01G409200 chr2D 95.183 4007 107 38 864 4798 495037232 495041224 0.000000e+00 6252.0
5 TraesCS2B01G409200 chr2D 90.885 746 43 11 4 741 495036482 495037210 0.000000e+00 977.0
6 TraesCS2B01G409200 chr2D 82.781 784 86 26 5006 5747 365026240 365027016 0.000000e+00 654.0
7 TraesCS2B01G409200 chr2D 82.249 738 91 13 5046 5747 436346896 436346163 8.350000e-168 601.0
8 TraesCS2B01G409200 chr2D 86.014 429 49 9 5051 5471 131003641 131004066 3.200000e-122 449.0
9 TraesCS2B01G409200 chr2A 93.996 4047 124 43 864 4801 638783195 638779159 0.000000e+00 6017.0
10 TraesCS2B01G409200 chr2A 94.070 371 14 5 1 364 638783955 638783586 1.830000e-154 556.0
11 TraesCS2B01G409200 chr2A 89.750 400 25 11 394 782 638783588 638783194 1.130000e-136 497.0
12 TraesCS2B01G409200 chr5D 82.675 785 89 14 5005 5747 40727059 40726280 0.000000e+00 652.0
13 TraesCS2B01G409200 chr5D 82.248 783 89 27 5009 5747 456847506 456846730 1.070000e-176 630.0
14 TraesCS2B01G409200 chr5D 86.786 280 37 0 5468 5747 203073602 203073323 4.380000e-81 313.0
15 TraesCS2B01G409200 chr5D 93.069 101 6 1 776 875 299400843 299400743 4.700000e-31 147.0
16 TraesCS2B01G409200 chr5A 81.678 584 69 20 5199 5745 667186355 667185773 8.900000e-123 451.0
17 TraesCS2B01G409200 chr1A 83.992 481 61 10 5010 5477 544104090 544103613 1.150000e-121 448.0
18 TraesCS2B01G409200 chr1A 91.919 99 7 1 781 878 320485673 320485575 2.830000e-28 137.0
19 TraesCS2B01G409200 chr6D 86.150 426 44 6 5009 5422 163143359 163143781 4.140000e-121 446.0
20 TraesCS2B01G409200 chr6D 83.230 483 66 6 5007 5477 405997560 405998039 4.170000e-116 429.0
21 TraesCS2B01G409200 chr6A 83.711 485 57 11 5006 5477 565553495 565553970 6.930000e-119 438.0
22 TraesCS2B01G409200 chr1D 84.165 461 58 7 5010 5458 192416556 192416099 3.220000e-117 433.0
23 TraesCS2B01G409200 chrUn 83.229 477 58 16 5006 5465 332272650 332273121 9.030000e-113 418.0
24 TraesCS2B01G409200 chr4B 83.229 477 58 16 5006 5465 643565889 643566360 9.030000e-113 418.0
25 TraesCS2B01G409200 chr4B 83.229 477 58 16 5006 5465 643573508 643573979 9.030000e-113 418.0
26 TraesCS2B01G409200 chr4B 98.824 85 1 0 781 865 487269829 487269745 1.010000e-32 152.0
27 TraesCS2B01G409200 chr4B 87.500 56 7 0 4105 4160 596775822 596775877 1.360000e-06 65.8
28 TraesCS2B01G409200 chr3D 88.214 280 33 0 5468 5747 431224322 431224043 9.350000e-88 335.0
29 TraesCS2B01G409200 chr4A 87.319 276 33 2 5468 5742 82390589 82390863 1.220000e-81 315.0
30 TraesCS2B01G409200 chr4A 87.719 57 5 2 4105 4160 680452933 680452988 1.360000e-06 65.8
31 TraesCS2B01G409200 chr3B 96.591 88 3 0 781 868 456069963 456070050 4.700000e-31 147.0
32 TraesCS2B01G409200 chr3B 89.623 106 9 2 780 884 764295090 764295194 3.660000e-27 134.0
33 TraesCS2B01G409200 chr7B 94.681 94 4 1 776 868 525957228 525957321 1.690000e-30 145.0
34 TraesCS2B01G409200 chr3A 95.556 90 3 1 781 870 712187196 712187284 6.090000e-30 143.0
35 TraesCS2B01G409200 chr7D 91.837 49 4 0 4841 4889 590820490 590820538 1.050000e-07 69.4
36 TraesCS2B01G409200 chr7A 90.909 44 4 0 4841 4884 518551224 518551267 6.300000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G409200 chr2B 582644095 582649920 5825 False 10759.000000 10759 100.000000 1 5826 1 chr2B.!!$F2 5825
1 TraesCS2B01G409200 chr2B 331222788 331223566 778 True 593.000000 593 81.354000 5006 5745 1 chr2B.!!$R2 739
2 TraesCS2B01G409200 chr2D 495036482 495041224 4742 False 3614.500000 6252 93.034000 4 4798 2 chr2D.!!$F3 4794
3 TraesCS2B01G409200 chr2D 365026240 365027016 776 False 654.000000 654 82.781000 5006 5747 1 chr2D.!!$F2 741
4 TraesCS2B01G409200 chr2D 436346163 436346896 733 True 601.000000 601 82.249000 5046 5747 1 chr2D.!!$R1 701
5 TraesCS2B01G409200 chr2A 638779159 638783955 4796 True 2356.666667 6017 92.605333 1 4801 3 chr2A.!!$R1 4800
6 TraesCS2B01G409200 chr5D 40726280 40727059 779 True 652.000000 652 82.675000 5005 5747 1 chr5D.!!$R1 742
7 TraesCS2B01G409200 chr5D 456846730 456847506 776 True 630.000000 630 82.248000 5009 5747 1 chr5D.!!$R4 738
8 TraesCS2B01G409200 chr5A 667185773 667186355 582 True 451.000000 451 81.678000 5199 5745 1 chr5A.!!$R1 546

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
971 991 0.040781 GCTTACCGCGTGCTTTTTGA 60.041 50.0 4.92 0.0 0.0 2.69 F
2302 2350 0.550914 TGATACTGGCATTGACCCCC 59.449 55.0 0.00 0.0 0.0 5.40 F
2939 3011 0.883833 CTCCCATGTGACCTGTTTGC 59.116 55.0 0.00 0.0 0.0 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2499 2547 0.178984 CATACCTGCCATGGCCATCA 60.179 55.0 33.44 16.74 41.09 3.07 R
3893 4014 0.739813 GCGCGTTCTCTATGTTGGGT 60.740 55.0 8.43 0.00 0.00 4.51 R
4838 4964 0.035820 GGGTTGCCGTTGGAGATGTA 60.036 55.0 0.00 0.00 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
194 202 8.304596 TCTCATAAACGATCTGAACTGTTACTT 58.695 33.333 0.00 0.00 0.00 2.24
261 271 5.465532 TTTGCAGCAATCAATTAGGAACA 57.534 34.783 9.12 0.00 0.00 3.18
279 289 3.963428 ACATAGGATATTGGCTCCGAC 57.037 47.619 0.00 0.00 37.88 4.79
378 388 1.445871 GTGGTACATTCCACGGTTCC 58.554 55.000 0.00 0.00 46.38 3.62
511 522 4.646040 TGCGATGTTACCTACTAGCCTTTA 59.354 41.667 0.00 0.00 0.00 1.85
537 548 1.402968 ACCAAATCAGACGCATGATGC 59.597 47.619 7.49 7.49 39.84 3.91
565 576 7.664731 CCAGCATAGATGGATTAATTCTTCAGT 59.335 37.037 11.23 0.00 42.34 3.41
669 680 1.133167 TCCGGCATCTCTGAAGGGATA 60.133 52.381 0.00 0.00 0.00 2.59
717 728 8.167605 TGTTTGGAAATAGGTTCGTCAATTTA 57.832 30.769 0.00 0.00 37.08 1.40
788 806 9.084533 AGAGTGATTCTACAATAATACTCCCTC 57.915 37.037 0.00 0.00 32.79 4.30
789 807 8.196378 AGTGATTCTACAATAATACTCCCTCC 57.804 38.462 0.00 0.00 0.00 4.30
790 808 7.039644 AGTGATTCTACAATAATACTCCCTCCG 60.040 40.741 0.00 0.00 0.00 4.63
791 809 6.781014 TGATTCTACAATAATACTCCCTCCGT 59.219 38.462 0.00 0.00 0.00 4.69
792 810 7.946219 TGATTCTACAATAATACTCCCTCCGTA 59.054 37.037 0.00 0.00 0.00 4.02
793 811 8.716674 ATTCTACAATAATACTCCCTCCGTAA 57.283 34.615 0.00 0.00 0.00 3.18
794 812 8.537728 TTCTACAATAATACTCCCTCCGTAAA 57.462 34.615 0.00 0.00 0.00 2.01
795 813 8.174733 TCTACAATAATACTCCCTCCGTAAAG 57.825 38.462 0.00 0.00 0.00 1.85
796 814 8.000709 TCTACAATAATACTCCCTCCGTAAAGA 58.999 37.037 0.00 0.00 0.00 2.52
797 815 7.427989 ACAATAATACTCCCTCCGTAAAGAA 57.572 36.000 0.00 0.00 0.00 2.52
798 816 7.854337 ACAATAATACTCCCTCCGTAAAGAAA 58.146 34.615 0.00 0.00 0.00 2.52
799 817 8.491958 ACAATAATACTCCCTCCGTAAAGAAAT 58.508 33.333 0.00 0.00 0.00 2.17
800 818 9.991906 CAATAATACTCCCTCCGTAAAGAAATA 57.008 33.333 0.00 0.00 0.00 1.40
807 825 8.312564 ACTCCCTCCGTAAAGAAATATAATAGC 58.687 37.037 0.00 0.00 0.00 2.97
808 826 7.318141 TCCCTCCGTAAAGAAATATAATAGCG 58.682 38.462 0.00 0.00 0.00 4.26
809 827 7.039504 TCCCTCCGTAAAGAAATATAATAGCGT 60.040 37.037 0.00 0.00 0.00 5.07
810 828 7.601508 CCCTCCGTAAAGAAATATAATAGCGTT 59.398 37.037 0.00 0.00 0.00 4.84
811 829 8.985805 CCTCCGTAAAGAAATATAATAGCGTTT 58.014 33.333 0.00 0.00 0.00 3.60
860 878 9.449719 AACACTCTTATATTTGTTTACAGAGGG 57.550 33.333 0.00 0.00 0.00 4.30
861 879 8.822805 ACACTCTTATATTTGTTTACAGAGGGA 58.177 33.333 2.59 0.00 0.00 4.20
862 880 9.319143 CACTCTTATATTTGTTTACAGAGGGAG 57.681 37.037 0.00 0.00 0.00 4.30
869 887 9.975218 ATATTTGTTTACAGAGGGAGTATGTTT 57.025 29.630 0.00 0.00 31.40 2.83
870 888 8.706322 ATTTGTTTACAGAGGGAGTATGTTTT 57.294 30.769 0.00 0.00 31.40 2.43
951 971 1.630878 GTCTCATGGAGGTTGGGAACT 59.369 52.381 0.00 0.00 0.00 3.01
971 991 0.040781 GCTTACCGCGTGCTTTTTGA 60.041 50.000 4.92 0.00 0.00 2.69
985 1005 5.183140 GTGCTTTTTGAGGCCTAGTTATGAA 59.817 40.000 4.42 0.00 0.00 2.57
1383 1403 1.608717 GGAGAGGCGAGGAAGCTCAA 61.609 60.000 0.00 0.00 37.29 3.02
1399 1419 6.239036 GGAAGCTCAAAAGTACAAGGAAATGT 60.239 38.462 0.00 0.00 37.32 2.71
1437 1457 2.357009 CGCCTTCCTGGAATCATTTCTG 59.643 50.000 10.03 0.00 38.35 3.02
1644 1664 3.657634 TGCTGAACAGACAGTGATTCTC 58.342 45.455 5.97 0.00 39.73 2.87
1650 1670 2.369860 ACAGACAGTGATTCTCTTGCCA 59.630 45.455 0.00 0.00 0.00 4.92
1674 1694 6.380274 CAGTCTCAGTAGTATTTCCAGGGTAA 59.620 42.308 0.00 0.00 0.00 2.85
1677 1697 8.265764 GTCTCAGTAGTATTTCCAGGGTAAAAT 58.734 37.037 0.00 0.00 0.00 1.82
1679 1699 9.462606 CTCAGTAGTATTTCCAGGGTAAAATTT 57.537 33.333 0.00 0.00 0.00 1.82
1681 1701 9.238368 CAGTAGTATTTCCAGGGTAAAATTTGA 57.762 33.333 0.00 0.00 0.00 2.69
1682 1702 9.816787 AGTAGTATTTCCAGGGTAAAATTTGAA 57.183 29.630 0.00 0.00 0.00 2.69
1684 1704 8.134202 AGTATTTCCAGGGTAAAATTTGAAGG 57.866 34.615 0.00 0.00 0.00 3.46
1685 1705 7.953493 AGTATTTCCAGGGTAAAATTTGAAGGA 59.047 33.333 0.00 0.00 0.00 3.36
1687 1707 6.664428 TTCCAGGGTAAAATTTGAAGGAAG 57.336 37.500 0.00 0.00 0.00 3.46
1688 1708 5.711698 TCCAGGGTAAAATTTGAAGGAAGT 58.288 37.500 0.00 0.00 0.00 3.01
1689 1709 6.140377 TCCAGGGTAAAATTTGAAGGAAGTT 58.860 36.000 0.00 0.00 0.00 2.66
1690 1710 6.613679 TCCAGGGTAAAATTTGAAGGAAGTTT 59.386 34.615 0.00 0.00 32.39 2.66
1692 1712 7.226523 CCAGGGTAAAATTTGAAGGAAGTTTTG 59.773 37.037 0.00 0.00 35.09 2.44
1694 1714 6.017440 GGGTAAAATTTGAAGGAAGTTTTGCC 60.017 38.462 11.33 11.33 46.43 4.52
1695 1715 6.540551 GGTAAAATTTGAAGGAAGTTTTGCCA 59.459 34.615 13.55 0.00 46.41 4.92
1696 1716 7.228507 GGTAAAATTTGAAGGAAGTTTTGCCAT 59.771 33.333 13.55 0.00 46.41 4.40
1697 1717 9.267084 GTAAAATTTGAAGGAAGTTTTGCCATA 57.733 29.630 0.00 0.00 35.09 2.74
2042 2078 9.612066 TTTTGCAGGTTATTCTTTCTGAATTTT 57.388 25.926 0.00 0.00 42.28 1.82
2043 2079 8.592105 TTGCAGGTTATTCTTTCTGAATTTTG 57.408 30.769 0.00 0.00 42.28 2.44
2044 2080 7.950512 TGCAGGTTATTCTTTCTGAATTTTGA 58.049 30.769 0.00 0.00 42.28 2.69
2045 2081 7.867403 TGCAGGTTATTCTTTCTGAATTTTGAC 59.133 33.333 0.00 0.00 42.28 3.18
2046 2082 7.867403 GCAGGTTATTCTTTCTGAATTTTGACA 59.133 33.333 0.00 0.00 42.28 3.58
2088 2136 2.485814 CTCTGTTGAGGCTTAAACTGGC 59.514 50.000 15.75 0.00 36.70 4.85
2136 2184 4.216411 ACAGGCGGCTAAAATTCTTAGA 57.784 40.909 12.74 0.00 0.00 2.10
2302 2350 0.550914 TGATACTGGCATTGACCCCC 59.449 55.000 0.00 0.00 0.00 5.40
2350 2398 0.971386 CCAATCAAAGCAGCCACCTT 59.029 50.000 0.00 0.00 0.00 3.50
2499 2547 3.976654 ACTATGCATCACCTTATGACCCT 59.023 43.478 0.19 0.00 41.24 4.34
2546 2594 3.402058 GCTGCTGACTGCTATTTGAAG 57.598 47.619 5.87 0.00 43.37 3.02
2547 2595 2.746362 GCTGCTGACTGCTATTTGAAGT 59.254 45.455 5.87 0.00 43.37 3.01
2576 2625 4.792521 TTTCAGTCTCAGAAGAGCTACC 57.207 45.455 0.00 0.00 41.81 3.18
2630 2679 2.357034 TCGACCGCAGCTGGAAAC 60.357 61.111 17.12 0.00 0.00 2.78
2646 2695 2.749621 GGAAACTTCCATACACCAGCAG 59.250 50.000 3.50 0.00 46.76 4.24
2757 2828 8.744652 TGTTGAAAGTACATCCAAAGAAGAAAA 58.255 29.630 0.00 0.00 0.00 2.29
2801 2873 3.474942 TGCACTGACAGTCTTGCAA 57.525 47.368 21.61 0.00 41.90 4.08
2812 2884 4.392940 ACAGTCTTGCAATCTACAAAGCT 58.607 39.130 0.00 0.00 0.00 3.74
2818 2890 3.270027 TGCAATCTACAAAGCTGCGTAT 58.730 40.909 0.00 0.00 35.29 3.06
2867 2939 2.029844 GCTGCTGTCGACCAGGTTC 61.030 63.158 19.32 3.89 41.81 3.62
2869 2941 3.112709 GCTGTCGACCAGGTTCGC 61.113 66.667 14.12 0.61 41.81 4.70
2932 3004 4.015872 TGTTAAAGTCTCCCATGTGACC 57.984 45.455 7.00 0.00 35.98 4.02
2939 3011 0.883833 CTCCCATGTGACCTGTTTGC 59.116 55.000 0.00 0.00 0.00 3.68
3016 3088 2.602568 CCTGGCCCTGCAGCTTTT 60.603 61.111 8.66 0.00 0.00 2.27
3145 3217 2.355197 CCATGGATAACAAGTGTCGCA 58.645 47.619 5.56 0.00 0.00 5.10
3290 3387 9.775854 ATTATGTATCTGTTTCAGATCTTCCTG 57.224 33.333 14.31 0.00 46.83 3.86
3428 3525 2.092429 GTCTAATGGTTGCCAGGATCCA 60.092 50.000 15.82 0.00 36.75 3.41
3503 3600 5.302059 TGTGTCATCTAACTACTATCAGGGC 59.698 44.000 0.00 0.00 0.00 5.19
3560 3657 2.183046 GGAGCTGCTGGAGTCGTC 59.817 66.667 7.01 0.00 0.00 4.20
3603 3700 7.094162 CCGGTGATGTAGACTATGAATATCAGT 60.094 40.741 0.00 0.00 0.00 3.41
3619 3716 7.234782 TGAATATCAGTCCATATTTCCTACCGT 59.765 37.037 0.00 0.00 30.44 4.83
3670 3767 1.904537 AGACATGATGGTGAGTGCAGA 59.095 47.619 0.00 0.00 0.00 4.26
3671 3768 2.005451 GACATGATGGTGAGTGCAGAC 58.995 52.381 0.00 0.00 0.00 3.51
3672 3769 1.348696 ACATGATGGTGAGTGCAGACA 59.651 47.619 0.00 0.00 0.00 3.41
3710 3831 2.622942 TGAATGTTTGGGTTGCTCTGTC 59.377 45.455 0.00 0.00 0.00 3.51
3717 3838 2.609747 TGGGTTGCTCTGTCTAACTCT 58.390 47.619 0.00 0.00 0.00 3.24
3718 3839 2.300152 TGGGTTGCTCTGTCTAACTCTG 59.700 50.000 0.00 0.00 0.00 3.35
3719 3840 2.563179 GGGTTGCTCTGTCTAACTCTGA 59.437 50.000 0.00 0.00 0.00 3.27
3724 3845 5.065704 TGCTCTGTCTAACTCTGATGAAC 57.934 43.478 0.00 0.00 0.00 3.18
3857 3978 3.506096 CGTGCGAGCTACTCCGGA 61.506 66.667 2.93 2.93 0.00 5.14
3893 4014 4.950479 GACTACTCGTCGAGGGGA 57.050 61.111 25.25 9.94 33.35 4.81
3909 4030 2.311124 GGGACCCAACATAGAGAACG 57.689 55.000 5.33 0.00 0.00 3.95
3938 4059 2.342279 CTGGCGGACGTCCTGAAA 59.658 61.111 30.92 13.54 0.00 2.69
4058 4179 2.927856 ACGAGCATGTCCACCCCA 60.928 61.111 0.00 0.00 0.00 4.96
4295 4416 2.126189 GACGCCACGTACAGGGAC 60.126 66.667 4.05 0.00 41.37 4.46
4376 4497 4.451150 GCATCCTGCCCGACGTCA 62.451 66.667 17.16 0.00 37.42 4.35
4471 4592 3.050275 GAAGGTGTGGAGCGTGGC 61.050 66.667 0.00 0.00 0.00 5.01
4736 4857 2.817844 ACTCGCGTACTGGATATGCATA 59.182 45.455 9.27 9.27 44.90 3.14
4757 4878 7.096884 CATATATGCCTGGTGTATACGTACT 57.903 40.000 0.00 0.00 0.00 2.73
4758 4879 7.544622 CATATATGCCTGGTGTATACGTACTT 58.455 38.462 0.00 0.00 0.00 2.24
4760 4881 2.199236 GCCTGGTGTATACGTACTTGC 58.801 52.381 0.00 0.00 0.00 4.01
4761 4882 2.456989 CCTGGTGTATACGTACTTGCG 58.543 52.381 0.00 0.00 37.94 4.85
4773 4899 4.863491 ACGTACTTGCGTTATGGGTATAG 58.137 43.478 0.00 0.00 43.04 1.31
4774 4900 4.232221 CGTACTTGCGTTATGGGTATAGG 58.768 47.826 0.00 0.00 0.00 2.57
4775 4901 4.261741 CGTACTTGCGTTATGGGTATAGGT 60.262 45.833 0.00 0.00 0.00 3.08
4776 4902 5.048782 CGTACTTGCGTTATGGGTATAGGTA 60.049 44.000 0.00 0.00 0.00 3.08
4779 4905 6.928520 ACTTGCGTTATGGGTATAGGTATAC 58.071 40.000 0.00 0.00 38.21 1.47
4801 4927 5.623169 ACTACTACTGTATACAGAGGGAGC 58.377 45.833 34.16 0.00 46.59 4.70
4802 4928 3.834938 ACTACTGTATACAGAGGGAGCC 58.165 50.000 34.16 0.00 46.59 4.70
4803 4929 1.693627 ACTGTATACAGAGGGAGCCG 58.306 55.000 34.16 10.19 46.59 5.52
4804 4930 1.214673 ACTGTATACAGAGGGAGCCGA 59.785 52.381 34.16 0.00 46.59 5.54
4805 4931 1.883275 CTGTATACAGAGGGAGCCGAG 59.117 57.143 25.83 0.00 46.59 4.63
4806 4932 1.493446 TGTATACAGAGGGAGCCGAGA 59.507 52.381 0.08 0.00 0.00 4.04
4807 4933 2.092049 TGTATACAGAGGGAGCCGAGAA 60.092 50.000 0.08 0.00 0.00 2.87
4808 4934 2.390225 ATACAGAGGGAGCCGAGAAT 57.610 50.000 0.00 0.00 0.00 2.40
4809 4935 1.403814 TACAGAGGGAGCCGAGAATG 58.596 55.000 0.00 0.00 0.00 2.67
4810 4936 0.324738 ACAGAGGGAGCCGAGAATGA 60.325 55.000 0.00 0.00 0.00 2.57
4811 4937 0.826715 CAGAGGGAGCCGAGAATGAA 59.173 55.000 0.00 0.00 0.00 2.57
4812 4938 1.208052 CAGAGGGAGCCGAGAATGAAA 59.792 52.381 0.00 0.00 0.00 2.69
4813 4939 1.909302 AGAGGGAGCCGAGAATGAAAA 59.091 47.619 0.00 0.00 0.00 2.29
4814 4940 2.305927 AGAGGGAGCCGAGAATGAAAAA 59.694 45.455 0.00 0.00 0.00 1.94
4815 4941 3.054065 AGAGGGAGCCGAGAATGAAAAAT 60.054 43.478 0.00 0.00 0.00 1.82
4816 4942 3.696548 GAGGGAGCCGAGAATGAAAAATT 59.303 43.478 0.00 0.00 0.00 1.82
4817 4943 4.089361 AGGGAGCCGAGAATGAAAAATTT 58.911 39.130 0.00 0.00 0.00 1.82
4818 4944 5.261216 AGGGAGCCGAGAATGAAAAATTTA 58.739 37.500 0.00 0.00 0.00 1.40
4819 4945 5.358160 AGGGAGCCGAGAATGAAAAATTTAG 59.642 40.000 0.00 0.00 0.00 1.85
4820 4946 5.357032 GGGAGCCGAGAATGAAAAATTTAGA 59.643 40.000 0.00 0.00 0.00 2.10
4821 4947 6.258899 GGAGCCGAGAATGAAAAATTTAGAC 58.741 40.000 0.00 0.00 0.00 2.59
4822 4948 6.094186 GGAGCCGAGAATGAAAAATTTAGACT 59.906 38.462 0.00 0.00 0.00 3.24
4823 4949 7.280205 GGAGCCGAGAATGAAAAATTTAGACTA 59.720 37.037 0.00 0.00 0.00 2.59
4824 4950 8.561738 AGCCGAGAATGAAAAATTTAGACTAA 57.438 30.769 0.00 0.00 0.00 2.24
4825 4951 9.178758 AGCCGAGAATGAAAAATTTAGACTAAT 57.821 29.630 0.00 0.00 0.00 1.73
4826 4952 9.226345 GCCGAGAATGAAAAATTTAGACTAATG 57.774 33.333 0.00 0.00 0.00 1.90
4827 4953 9.226345 CCGAGAATGAAAAATTTAGACTAATGC 57.774 33.333 0.00 0.00 0.00 3.56
4828 4954 8.937932 CGAGAATGAAAAATTTAGACTAATGCG 58.062 33.333 0.00 0.00 0.00 4.73
4829 4955 9.226345 GAGAATGAAAAATTTAGACTAATGCGG 57.774 33.333 0.00 0.00 0.00 5.69
4830 4956 8.956426 AGAATGAAAAATTTAGACTAATGCGGA 58.044 29.630 0.00 0.00 0.00 5.54
4831 4957 9.226345 GAATGAAAAATTTAGACTAATGCGGAG 57.774 33.333 0.00 0.00 0.00 4.63
4844 4970 3.843304 CGGAGCCTCGGTACATCT 58.157 61.111 0.00 0.00 0.00 2.90
4845 4971 1.655329 CGGAGCCTCGGTACATCTC 59.345 63.158 0.00 0.00 0.00 2.75
4846 4972 1.797211 CGGAGCCTCGGTACATCTCC 61.797 65.000 0.00 2.01 39.82 3.71
4847 4973 0.755698 GGAGCCTCGGTACATCTCCA 60.756 60.000 11.00 0.00 42.10 3.86
4848 4974 1.112113 GAGCCTCGGTACATCTCCAA 58.888 55.000 0.00 0.00 0.00 3.53
4849 4975 0.824759 AGCCTCGGTACATCTCCAAC 59.175 55.000 0.00 0.00 0.00 3.77
4850 4976 0.527817 GCCTCGGTACATCTCCAACG 60.528 60.000 0.00 0.00 0.00 4.10
4851 4977 0.102481 CCTCGGTACATCTCCAACGG 59.898 60.000 0.00 0.00 0.00 4.44
4852 4978 0.527817 CTCGGTACATCTCCAACGGC 60.528 60.000 0.00 0.00 0.00 5.68
4853 4979 1.216977 CGGTACATCTCCAACGGCA 59.783 57.895 0.00 0.00 0.00 5.69
4854 4980 0.390603 CGGTACATCTCCAACGGCAA 60.391 55.000 0.00 0.00 0.00 4.52
4855 4981 1.084289 GGTACATCTCCAACGGCAAC 58.916 55.000 0.00 0.00 0.00 4.17
4856 4982 1.084289 GTACATCTCCAACGGCAACC 58.916 55.000 0.00 0.00 0.00 3.77
4857 4983 0.035820 TACATCTCCAACGGCAACCC 60.036 55.000 0.00 0.00 0.00 4.11
4868 4994 3.605013 GGCAACCCGCAAAATTTCT 57.395 47.368 0.00 0.00 45.17 2.52
4869 4995 1.428448 GGCAACCCGCAAAATTTCTC 58.572 50.000 0.00 0.00 45.17 2.87
4870 4996 1.428448 GCAACCCGCAAAATTTCTCC 58.572 50.000 0.00 0.00 41.79 3.71
4871 4997 1.939381 GCAACCCGCAAAATTTCTCCC 60.939 52.381 0.00 0.00 41.79 4.30
4872 4998 0.601057 AACCCGCAAAATTTCTCCCG 59.399 50.000 0.00 0.00 0.00 5.14
4873 4999 1.153842 CCCGCAAAATTTCTCCCGC 60.154 57.895 0.00 0.00 0.00 6.13
4874 5000 1.583986 CCGCAAAATTTCTCCCGCA 59.416 52.632 0.00 0.00 0.00 5.69
4875 5001 0.173255 CCGCAAAATTTCTCCCGCAT 59.827 50.000 0.00 0.00 0.00 4.73
4876 5002 1.548986 CGCAAAATTTCTCCCGCATC 58.451 50.000 0.00 0.00 0.00 3.91
4877 5003 1.798813 CGCAAAATTTCTCCCGCATCC 60.799 52.381 0.00 0.00 0.00 3.51
4878 5004 1.798813 GCAAAATTTCTCCCGCATCCG 60.799 52.381 0.00 0.00 0.00 4.18
4879 5005 1.472480 CAAAATTTCTCCCGCATCCGT 59.528 47.619 0.00 0.00 0.00 4.69
4880 5006 1.379527 AAATTTCTCCCGCATCCGTC 58.620 50.000 0.00 0.00 0.00 4.79
4881 5007 0.463833 AATTTCTCCCGCATCCGTCC 60.464 55.000 0.00 0.00 0.00 4.79
4882 5008 2.644555 ATTTCTCCCGCATCCGTCCG 62.645 60.000 0.00 0.00 0.00 4.79
4889 5015 3.115892 GCATCCGTCCGCGAACAA 61.116 61.111 8.23 0.00 41.33 2.83
4890 5016 3.081133 CATCCGTCCGCGAACAAG 58.919 61.111 8.23 0.00 41.33 3.16
4891 5017 1.445410 CATCCGTCCGCGAACAAGA 60.445 57.895 8.23 0.00 41.33 3.02
4892 5018 1.153823 ATCCGTCCGCGAACAAGAG 60.154 57.895 8.23 0.00 41.33 2.85
4893 5019 2.558554 ATCCGTCCGCGAACAAGAGG 62.559 60.000 8.23 0.74 41.33 3.69
4894 5020 2.809601 CGTCCGCGAACAAGAGGG 60.810 66.667 8.23 0.00 41.33 4.30
4895 5021 2.654877 GTCCGCGAACAAGAGGGA 59.345 61.111 8.23 0.00 0.00 4.20
4896 5022 1.737008 GTCCGCGAACAAGAGGGAC 60.737 63.158 8.23 0.00 40.24 4.46
4898 5024 0.609957 TCCGCGAACAAGAGGGACTA 60.610 55.000 8.23 0.00 41.55 2.59
4899 5025 0.179134 CCGCGAACAAGAGGGACTAG 60.179 60.000 8.23 0.00 41.55 2.57
4900 5026 0.526662 CGCGAACAAGAGGGACTAGT 59.473 55.000 0.00 0.00 41.55 2.57
4901 5027 1.067776 CGCGAACAAGAGGGACTAGTT 60.068 52.381 0.00 0.00 41.55 2.24
4902 5028 2.608268 GCGAACAAGAGGGACTAGTTC 58.392 52.381 0.00 0.00 41.55 3.01
4903 5029 2.029290 GCGAACAAGAGGGACTAGTTCA 60.029 50.000 2.92 0.00 41.62 3.18
4904 5030 3.368531 GCGAACAAGAGGGACTAGTTCAT 60.369 47.826 2.92 0.00 41.62 2.57
4905 5031 4.177026 CGAACAAGAGGGACTAGTTCATG 58.823 47.826 2.92 0.21 41.62 3.07
4906 5032 4.508662 GAACAAGAGGGACTAGTTCATGG 58.491 47.826 2.92 0.00 41.55 3.66
4907 5033 3.791320 ACAAGAGGGACTAGTTCATGGA 58.209 45.455 2.92 0.00 41.55 3.41
4908 5034 3.515901 ACAAGAGGGACTAGTTCATGGAC 59.484 47.826 2.92 0.00 41.55 4.02
4909 5035 3.474798 AGAGGGACTAGTTCATGGACA 57.525 47.619 6.96 0.00 41.55 4.02
4910 5036 4.000928 AGAGGGACTAGTTCATGGACAT 57.999 45.455 6.96 0.00 41.55 3.06
4911 5037 3.708631 AGAGGGACTAGTTCATGGACATG 59.291 47.826 6.96 5.95 41.55 3.21
4912 5038 2.774234 AGGGACTAGTTCATGGACATGG 59.226 50.000 6.96 0.00 36.68 3.66
4913 5039 2.771943 GGGACTAGTTCATGGACATGGA 59.228 50.000 6.96 0.49 39.24 3.41
4914 5040 3.392616 GGGACTAGTTCATGGACATGGAT 59.607 47.826 6.96 2.16 39.24 3.41
4915 5041 4.384056 GGACTAGTTCATGGACATGGATG 58.616 47.826 6.96 0.00 39.24 3.51
4916 5042 3.812053 GACTAGTTCATGGACATGGATGC 59.188 47.826 6.96 1.56 39.24 3.91
4917 5043 1.671979 AGTTCATGGACATGGATGCG 58.328 50.000 6.96 0.00 39.24 4.73
4918 5044 1.210234 AGTTCATGGACATGGATGCGA 59.790 47.619 6.96 0.00 39.24 5.10
4919 5045 2.016318 GTTCATGGACATGGATGCGAA 58.984 47.619 11.98 0.00 39.24 4.70
4920 5046 2.416680 TCATGGACATGGATGCGAAA 57.583 45.000 11.98 0.00 39.24 3.46
4921 5047 2.291365 TCATGGACATGGATGCGAAAG 58.709 47.619 11.98 0.00 39.24 2.62
4922 5048 2.093021 TCATGGACATGGATGCGAAAGA 60.093 45.455 11.98 0.00 39.24 2.52
4923 5049 1.737838 TGGACATGGATGCGAAAGAC 58.262 50.000 0.00 0.00 0.00 3.01
4924 5050 1.017387 GGACATGGATGCGAAAGACC 58.983 55.000 0.00 0.00 0.00 3.85
4925 5051 1.407437 GGACATGGATGCGAAAGACCT 60.407 52.381 0.00 0.00 0.00 3.85
4926 5052 2.359900 GACATGGATGCGAAAGACCTT 58.640 47.619 0.00 0.00 0.00 3.50
4927 5053 2.352960 GACATGGATGCGAAAGACCTTC 59.647 50.000 0.00 0.00 0.00 3.46
4928 5054 2.290260 ACATGGATGCGAAAGACCTTCA 60.290 45.455 0.00 0.00 33.17 3.02
4929 5055 2.787473 TGGATGCGAAAGACCTTCAT 57.213 45.000 0.00 0.00 33.17 2.57
4930 5056 2.632377 TGGATGCGAAAGACCTTCATC 58.368 47.619 0.00 0.00 33.17 2.92
4931 5057 1.943340 GGATGCGAAAGACCTTCATCC 59.057 52.381 11.01 11.01 44.13 3.51
4932 5058 2.632377 GATGCGAAAGACCTTCATCCA 58.368 47.619 0.00 0.00 33.17 3.41
4933 5059 2.559698 TGCGAAAGACCTTCATCCAA 57.440 45.000 0.00 0.00 33.17 3.53
4934 5060 2.151202 TGCGAAAGACCTTCATCCAAC 58.849 47.619 0.00 0.00 33.17 3.77
4935 5061 1.468914 GCGAAAGACCTTCATCCAACC 59.531 52.381 0.00 0.00 33.17 3.77
4936 5062 1.732259 CGAAAGACCTTCATCCAACCG 59.268 52.381 0.00 0.00 33.17 4.44
4937 5063 2.779506 GAAAGACCTTCATCCAACCGT 58.220 47.619 0.00 0.00 33.86 4.83
4938 5064 3.615592 CGAAAGACCTTCATCCAACCGTA 60.616 47.826 0.00 0.00 33.17 4.02
4939 5065 3.611766 AAGACCTTCATCCAACCGTAG 57.388 47.619 0.00 0.00 0.00 3.51
4940 5066 2.537143 AGACCTTCATCCAACCGTAGT 58.463 47.619 0.00 0.00 0.00 2.73
4941 5067 2.904434 AGACCTTCATCCAACCGTAGTT 59.096 45.455 0.00 0.00 36.33 2.24
4942 5068 7.994060 GAAAGACCTTCATCCAACCGTAGTTG 61.994 46.154 0.00 0.00 42.10 3.16
4951 5077 3.944422 CAACCGTAGTTGCATACATCC 57.056 47.619 0.00 0.00 46.43 3.51
4952 5078 2.218953 ACCGTAGTTGCATACATCCG 57.781 50.000 0.00 0.00 0.00 4.18
4953 5079 1.202486 ACCGTAGTTGCATACATCCGG 60.202 52.381 0.00 0.00 38.61 5.14
4954 5080 0.859232 CGTAGTTGCATACATCCGGC 59.141 55.000 0.00 0.00 0.00 6.13
4955 5081 1.226746 GTAGTTGCATACATCCGGCC 58.773 55.000 0.00 0.00 0.00 6.13
4956 5082 1.128200 TAGTTGCATACATCCGGCCT 58.872 50.000 0.00 0.00 0.00 5.19
4957 5083 1.128200 AGTTGCATACATCCGGCCTA 58.872 50.000 0.00 0.00 0.00 3.93
4958 5084 1.699634 AGTTGCATACATCCGGCCTAT 59.300 47.619 0.00 0.00 0.00 2.57
4959 5085 2.076863 GTTGCATACATCCGGCCTATC 58.923 52.381 0.00 0.00 0.00 2.08
4960 5086 1.644509 TGCATACATCCGGCCTATCT 58.355 50.000 0.00 0.00 0.00 1.98
4961 5087 1.977854 TGCATACATCCGGCCTATCTT 59.022 47.619 0.00 0.00 0.00 2.40
4962 5088 2.371841 TGCATACATCCGGCCTATCTTT 59.628 45.455 0.00 0.00 0.00 2.52
4963 5089 3.181445 TGCATACATCCGGCCTATCTTTT 60.181 43.478 0.00 0.00 0.00 2.27
4964 5090 3.821033 GCATACATCCGGCCTATCTTTTT 59.179 43.478 0.00 0.00 0.00 1.94
4998 5124 5.630896 TTAAGTACGCACGATCAAATAGC 57.369 39.130 0.00 0.00 0.00 2.97
4999 5125 3.159353 AGTACGCACGATCAAATAGCA 57.841 42.857 0.00 0.00 0.00 3.49
5000 5126 3.116300 AGTACGCACGATCAAATAGCAG 58.884 45.455 0.00 0.00 0.00 4.24
5001 5127 0.652592 ACGCACGATCAAATAGCAGC 59.347 50.000 0.00 0.00 0.00 5.25
5002 5128 0.652071 CGCACGATCAAATAGCAGCA 59.348 50.000 0.00 0.00 0.00 4.41
5003 5129 1.262417 CGCACGATCAAATAGCAGCAT 59.738 47.619 0.00 0.00 0.00 3.79
5028 5154 5.509840 GCATGGAGAATAGATACCGTCAACT 60.510 44.000 0.00 0.00 0.00 3.16
5035 5161 8.271312 AGAATAGATACCGTCAACTAGATAGC 57.729 38.462 0.00 0.00 0.00 2.97
5043 5169 4.519350 CCGTCAACTAGATAGCAGTCCATA 59.481 45.833 0.00 0.00 0.00 2.74
5061 5191 6.759827 AGTCCATATTGTACGTCCATTAACAC 59.240 38.462 0.00 0.00 0.00 3.32
5098 5228 3.133141 GGAGCTTTTCCTTCAGTCAGT 57.867 47.619 0.00 0.00 43.16 3.41
5111 5241 1.933181 CAGTCAGTCTCGCAAACAACA 59.067 47.619 0.00 0.00 0.00 3.33
5165 5296 4.660168 AGATCTGGACATGCAAAGAAAGT 58.340 39.130 0.00 0.00 0.00 2.66
5181 5312 3.070015 AGAAAGTGTGCCAAATCCAAAGG 59.930 43.478 0.00 0.00 0.00 3.11
5183 5314 2.397597 AGTGTGCCAAATCCAAAGGTT 58.602 42.857 0.00 0.00 0.00 3.50
5196 5327 2.361757 CCAAAGGTTCTGTGATGCAACA 59.638 45.455 0.00 0.00 0.00 3.33
5197 5328 3.181477 CCAAAGGTTCTGTGATGCAACAA 60.181 43.478 0.00 0.00 0.00 2.83
5212 5343 7.809331 GTGATGCAACAACTTCAAGAATTATGA 59.191 33.333 0.00 0.00 0.00 2.15
5232 5363 3.266772 TGATGGGCTTCTTAACATGACCT 59.733 43.478 0.00 0.00 0.00 3.85
5253 5385 5.955355 ACCTTAATATTGCCCTTGTAAAGCA 59.045 36.000 0.00 0.00 44.44 3.91
5271 5403 4.574599 AGCATTCAAACAGTTCTTCCAC 57.425 40.909 0.00 0.00 0.00 4.02
5281 5420 0.593128 GTTCTTCCACGCATGCAGTT 59.407 50.000 19.57 0.00 0.00 3.16
5300 5439 4.761739 CAGTTAAGAGATCCAAGCAAACCA 59.238 41.667 0.00 0.00 0.00 3.67
5308 5447 2.132996 CAAGCAAACCAGGCCACCA 61.133 57.895 5.01 0.00 0.00 4.17
5336 5475 1.632409 TCTGAGATTGCCAAGAGCCTT 59.368 47.619 0.00 0.00 42.71 4.35
5363 5502 1.490490 TCTGCCACACTTGGTTCTCTT 59.510 47.619 0.00 0.00 45.98 2.85
5397 5536 2.981977 GAACACCTCGACCACGGCAA 62.982 60.000 0.00 0.00 40.21 4.52
5398 5537 2.047274 CACCTCGACCACGGCAAT 60.047 61.111 0.00 0.00 40.21 3.56
5416 5555 3.803021 GCAATTTGCAAACCTGACCATGA 60.803 43.478 21.53 0.00 44.26 3.07
5423 5562 3.256631 GCAAACCTGACCATGACATCTTT 59.743 43.478 0.00 0.00 0.00 2.52
5424 5563 4.458989 GCAAACCTGACCATGACATCTTTA 59.541 41.667 0.00 0.00 0.00 1.85
5428 5567 5.819991 ACCTGACCATGACATCTTTACATT 58.180 37.500 0.00 0.00 0.00 2.71
5466 5605 3.438297 AGGTACTCGTCCAATGAATCG 57.562 47.619 0.00 0.00 0.00 3.34
5481 5650 3.876589 ATCGGCGGTCGTGCACTTT 62.877 57.895 16.19 0.00 40.32 2.66
5493 5662 2.356382 CGTGCACTTTTGGTAACCAGAA 59.644 45.455 16.19 0.00 33.81 3.02
5497 5666 4.464597 TGCACTTTTGGTAACCAGAAAAGT 59.535 37.500 10.30 10.30 42.06 2.66
5532 5701 3.691118 CGGCATCCTTCTTCAAGATGAAA 59.309 43.478 1.79 0.00 35.73 2.69
5538 5707 7.498570 GCATCCTTCTTCAAGATGAAATAGTCT 59.501 37.037 1.79 0.00 35.73 3.24
5559 5729 3.165160 ATAGGACCGGACGCCATGC 62.165 63.158 9.46 0.00 0.00 4.06
5576 5746 4.334443 CCATGCTACAAACGATCGAAAAG 58.666 43.478 24.34 12.00 0.00 2.27
5584 5754 4.809426 ACAAACGATCGAAAAGAGTCTTGT 59.191 37.500 24.34 0.00 0.00 3.16
5589 5759 4.562789 CGATCGAAAAGAGTCTTGTGCATA 59.437 41.667 10.26 0.00 0.00 3.14
5613 5783 4.514569 CGCCGGCGAAAATGGTCG 62.515 66.667 44.86 10.04 43.98 4.79
5628 5798 2.167861 GTCGGCGAAGAGTGCATCC 61.168 63.158 12.92 0.00 0.00 3.51
5637 5807 1.754234 GAGTGCATCCGGGGCAAAT 60.754 57.895 20.79 13.67 43.91 2.32
5669 5839 1.333308 CAGTGTCAAATGGTTGTGCGA 59.667 47.619 0.00 0.00 36.07 5.10
5675 5845 0.951558 AAATGGTTGTGCGACCTGTC 59.048 50.000 9.75 0.00 40.47 3.51
5726 5896 4.635765 CGAGCCCTTGAAATTGAGAACATA 59.364 41.667 0.00 0.00 0.00 2.29
5760 5930 3.838795 GCGTGCACCATCGTCGTC 61.839 66.667 12.15 0.00 0.00 4.20
5761 5931 2.430075 CGTGCACCATCGTCGTCA 60.430 61.111 12.15 0.00 0.00 4.35
5762 5932 1.805539 CGTGCACCATCGTCGTCAT 60.806 57.895 12.15 0.00 0.00 3.06
5763 5933 1.742900 CGTGCACCATCGTCGTCATC 61.743 60.000 12.15 0.00 0.00 2.92
5764 5934 1.153647 TGCACCATCGTCGTCATCC 60.154 57.895 0.00 0.00 0.00 3.51
5765 5935 1.883084 GCACCATCGTCGTCATCCC 60.883 63.158 0.00 0.00 0.00 3.85
5766 5936 1.515487 CACCATCGTCGTCATCCCA 59.485 57.895 0.00 0.00 0.00 4.37
5767 5937 0.528466 CACCATCGTCGTCATCCCAG 60.528 60.000 0.00 0.00 0.00 4.45
5768 5938 0.970937 ACCATCGTCGTCATCCCAGT 60.971 55.000 0.00 0.00 0.00 4.00
5769 5939 1.029681 CCATCGTCGTCATCCCAGTA 58.970 55.000 0.00 0.00 0.00 2.74
5770 5940 1.269102 CCATCGTCGTCATCCCAGTAC 60.269 57.143 0.00 0.00 0.00 2.73
5771 5941 1.676529 CATCGTCGTCATCCCAGTACT 59.323 52.381 0.00 0.00 0.00 2.73
5772 5942 1.376543 TCGTCGTCATCCCAGTACTC 58.623 55.000 0.00 0.00 0.00 2.59
5773 5943 0.381089 CGTCGTCATCCCAGTACTCC 59.619 60.000 0.00 0.00 0.00 3.85
5774 5944 1.765230 GTCGTCATCCCAGTACTCCT 58.235 55.000 0.00 0.00 0.00 3.69
5775 5945 1.677052 GTCGTCATCCCAGTACTCCTC 59.323 57.143 0.00 0.00 0.00 3.71
5776 5946 1.033574 CGTCATCCCAGTACTCCTCC 58.966 60.000 0.00 0.00 0.00 4.30
5777 5947 1.410365 CGTCATCCCAGTACTCCTCCT 60.410 57.143 0.00 0.00 0.00 3.69
5778 5948 2.753247 GTCATCCCAGTACTCCTCCTT 58.247 52.381 0.00 0.00 0.00 3.36
5779 5949 2.432510 GTCATCCCAGTACTCCTCCTTG 59.567 54.545 0.00 0.00 0.00 3.61
5780 5950 2.044492 TCATCCCAGTACTCCTCCTTGT 59.956 50.000 0.00 0.00 0.00 3.16
5781 5951 2.233305 TCCCAGTACTCCTCCTTGTC 57.767 55.000 0.00 0.00 0.00 3.18
5782 5952 1.431633 TCCCAGTACTCCTCCTTGTCA 59.568 52.381 0.00 0.00 0.00 3.58
5783 5953 1.827969 CCCAGTACTCCTCCTTGTCAG 59.172 57.143 0.00 0.00 0.00 3.51
5784 5954 2.557676 CCCAGTACTCCTCCTTGTCAGA 60.558 54.545 0.00 0.00 0.00 3.27
5785 5955 2.494073 CCAGTACTCCTCCTTGTCAGAC 59.506 54.545 0.00 0.00 0.00 3.51
5786 5956 2.162608 CAGTACTCCTCCTTGTCAGACG 59.837 54.545 0.00 0.00 0.00 4.18
5787 5957 2.040012 AGTACTCCTCCTTGTCAGACGA 59.960 50.000 0.00 0.00 0.00 4.20
5788 5958 1.249407 ACTCCTCCTTGTCAGACGAC 58.751 55.000 0.00 0.00 42.93 4.34
5789 5959 1.202952 ACTCCTCCTTGTCAGACGACT 60.203 52.381 0.00 0.00 43.06 4.18
5790 5960 1.470890 CTCCTCCTTGTCAGACGACTC 59.529 57.143 0.00 0.00 43.06 3.36
5791 5961 1.202891 TCCTCCTTGTCAGACGACTCA 60.203 52.381 0.00 0.00 43.06 3.41
5792 5962 1.613925 CCTCCTTGTCAGACGACTCAA 59.386 52.381 0.00 0.00 43.06 3.02
5793 5963 2.232452 CCTCCTTGTCAGACGACTCAAT 59.768 50.000 0.00 0.00 43.06 2.57
5794 5964 3.444034 CCTCCTTGTCAGACGACTCAATA 59.556 47.826 0.00 0.00 43.06 1.90
5795 5965 4.098654 CCTCCTTGTCAGACGACTCAATAT 59.901 45.833 0.00 0.00 43.06 1.28
5796 5966 5.299531 CCTCCTTGTCAGACGACTCAATATA 59.700 44.000 0.00 0.00 43.06 0.86
5797 5967 6.378710 TCCTTGTCAGACGACTCAATATAG 57.621 41.667 0.00 0.00 43.06 1.31
5798 5968 5.886474 TCCTTGTCAGACGACTCAATATAGT 59.114 40.000 0.00 0.00 43.06 2.12
5799 5969 5.974158 CCTTGTCAGACGACTCAATATAGTG 59.026 44.000 0.00 0.00 43.06 2.74
5800 5970 4.921547 TGTCAGACGACTCAATATAGTGC 58.078 43.478 0.00 0.00 43.06 4.40
5801 5971 4.202020 TGTCAGACGACTCAATATAGTGCC 60.202 45.833 0.00 0.00 43.06 5.01
5802 5972 3.318275 TCAGACGACTCAATATAGTGCCC 59.682 47.826 0.00 0.00 0.00 5.36
5803 5973 2.293677 AGACGACTCAATATAGTGCCCG 59.706 50.000 0.00 1.80 0.00 6.13
5804 5974 2.029623 ACGACTCAATATAGTGCCCGT 58.970 47.619 0.00 2.40 0.00 5.28
5805 5975 3.216800 ACGACTCAATATAGTGCCCGTA 58.783 45.455 10.76 0.00 29.05 4.02
5806 5976 3.004106 ACGACTCAATATAGTGCCCGTAC 59.996 47.826 10.76 0.00 29.05 3.67
5807 5977 3.004002 CGACTCAATATAGTGCCCGTACA 59.996 47.826 0.00 0.00 0.00 2.90
5808 5978 4.321008 CGACTCAATATAGTGCCCGTACAT 60.321 45.833 0.00 0.00 0.00 2.29
5809 5979 4.883083 ACTCAATATAGTGCCCGTACATG 58.117 43.478 0.00 0.00 0.00 3.21
5810 5980 3.659786 TCAATATAGTGCCCGTACATGC 58.340 45.455 0.00 0.00 0.00 4.06
5811 5981 3.070302 TCAATATAGTGCCCGTACATGCA 59.930 43.478 2.37 2.37 34.54 3.96
5815 5985 2.267642 TGCCCGTACATGCACTCC 59.732 61.111 2.37 0.00 31.31 3.85
5816 5986 2.267642 GCCCGTACATGCACTCCA 59.732 61.111 0.00 0.00 0.00 3.86
5817 5987 1.376683 GCCCGTACATGCACTCCAA 60.377 57.895 0.00 0.00 0.00 3.53
5818 5988 0.958382 GCCCGTACATGCACTCCAAA 60.958 55.000 0.00 0.00 0.00 3.28
5819 5989 1.750193 CCCGTACATGCACTCCAAAT 58.250 50.000 0.00 0.00 0.00 2.32
5820 5990 1.670811 CCCGTACATGCACTCCAAATC 59.329 52.381 0.00 0.00 0.00 2.17
5821 5991 1.327460 CCGTACATGCACTCCAAATCG 59.673 52.381 0.00 0.00 0.00 3.34
5822 5992 1.327460 CGTACATGCACTCCAAATCGG 59.673 52.381 0.00 0.00 0.00 4.18
5823 5993 2.627945 GTACATGCACTCCAAATCGGA 58.372 47.619 0.00 0.00 43.61 4.55
5824 5994 2.198827 ACATGCACTCCAAATCGGAA 57.801 45.000 0.00 0.00 45.75 4.30
5825 5995 2.726821 ACATGCACTCCAAATCGGAAT 58.273 42.857 0.00 0.00 45.75 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.300620 CGTTGGCCGTCTTGAGTGA 60.301 57.895 0.00 0.00 0.00 3.41
56 58 1.136197 TGAAGAAATTTACACGGCGCG 60.136 47.619 6.90 0.00 0.00 6.86
61 63 8.574196 AAAGTGGAATTGAAGAAATTTACACG 57.426 30.769 0.00 0.00 43.71 4.49
91 95 5.005740 AGCTGTAATGCAAGACAATCTCAA 58.994 37.500 5.64 0.00 34.99 3.02
92 96 4.393990 CAGCTGTAATGCAAGACAATCTCA 59.606 41.667 5.25 0.00 34.99 3.27
104 112 6.421202 GGAGTAGTAATACACAGCTGTAATGC 59.579 42.308 21.20 6.52 36.43 3.56
194 202 2.412716 CGCAAGCGAGCATTTGTCTAAA 60.413 45.455 9.11 0.00 42.83 1.85
261 271 3.779444 TGAGTCGGAGCCAATATCCTAT 58.221 45.455 0.00 0.00 34.45 2.57
279 289 1.865970 GCATCTCGAGGCTCAAATGAG 59.134 52.381 15.95 12.51 44.75 2.90
372 382 0.941542 TGACGCAAAAGAAGGAACCG 59.058 50.000 0.00 0.00 0.00 4.44
378 388 5.418310 TTTAGACCTTGACGCAAAAGAAG 57.582 39.130 0.00 0.00 0.00 2.85
511 522 4.218200 TCATGCGTCTGATTTGGTTTCAAT 59.782 37.500 0.00 0.00 32.28 2.57
537 548 7.881751 TGAAGAATTAATCCATCTATGCTGGAG 59.118 37.037 0.00 0.00 45.64 3.86
573 584 3.334583 ACTGAAGAATTAGCCTCGCAA 57.665 42.857 0.00 0.00 0.00 4.85
574 585 3.334583 AACTGAAGAATTAGCCTCGCA 57.665 42.857 0.00 0.00 0.00 5.10
575 586 4.683832 TCTAACTGAAGAATTAGCCTCGC 58.316 43.478 0.00 0.00 0.00 5.03
642 653 1.833630 TCAGAGATGCCGGATTCAGTT 59.166 47.619 5.05 0.00 0.00 3.16
653 664 4.679373 TCAGTTATCCCTTCAGAGATGC 57.321 45.455 0.00 0.00 0.00 3.91
781 799 8.312564 GCTATTATATTTCTTTACGGAGGGAGT 58.687 37.037 0.00 0.00 0.00 3.85
782 800 7.488471 CGCTATTATATTTCTTTACGGAGGGAG 59.512 40.741 0.00 0.00 0.00 4.30
783 801 7.039504 ACGCTATTATATTTCTTTACGGAGGGA 60.040 37.037 0.00 0.00 0.00 4.20
784 802 7.095270 ACGCTATTATATTTCTTTACGGAGGG 58.905 38.462 0.00 0.00 0.00 4.30
785 803 8.530269 AACGCTATTATATTTCTTTACGGAGG 57.470 34.615 0.00 0.00 0.00 4.30
834 852 9.449719 CCCTCTGTAAACAAATATAAGAGTGTT 57.550 33.333 0.00 0.00 35.77 3.32
835 853 8.822805 TCCCTCTGTAAACAAATATAAGAGTGT 58.177 33.333 0.00 0.00 0.00 3.55
836 854 9.319143 CTCCCTCTGTAAACAAATATAAGAGTG 57.681 37.037 0.00 0.00 0.00 3.51
837 855 9.047947 ACTCCCTCTGTAAACAAATATAAGAGT 57.952 33.333 0.00 0.00 0.00 3.24
843 861 9.975218 AAACATACTCCCTCTGTAAACAAATAT 57.025 29.630 0.00 0.00 0.00 1.28
844 862 9.802039 AAAACATACTCCCTCTGTAAACAAATA 57.198 29.630 0.00 0.00 0.00 1.40
845 863 8.706322 AAAACATACTCCCTCTGTAAACAAAT 57.294 30.769 0.00 0.00 0.00 2.32
846 864 9.059260 GTAAAACATACTCCCTCTGTAAACAAA 57.941 33.333 0.00 0.00 0.00 2.83
847 865 8.434392 AGTAAAACATACTCCCTCTGTAAACAA 58.566 33.333 0.00 0.00 0.00 2.83
848 866 7.970102 AGTAAAACATACTCCCTCTGTAAACA 58.030 34.615 0.00 0.00 0.00 2.83
849 867 8.718734 CAAGTAAAACATACTCCCTCTGTAAAC 58.281 37.037 0.00 0.00 0.00 2.01
850 868 8.653191 TCAAGTAAAACATACTCCCTCTGTAAA 58.347 33.333 0.00 0.00 0.00 2.01
851 869 8.092687 GTCAAGTAAAACATACTCCCTCTGTAA 58.907 37.037 0.00 0.00 0.00 2.41
852 870 7.453752 AGTCAAGTAAAACATACTCCCTCTGTA 59.546 37.037 0.00 0.00 0.00 2.74
853 871 6.270231 AGTCAAGTAAAACATACTCCCTCTGT 59.730 38.462 0.00 0.00 0.00 3.41
854 872 6.702329 AGTCAAGTAAAACATACTCCCTCTG 58.298 40.000 0.00 0.00 0.00 3.35
855 873 6.936968 AGTCAAGTAAAACATACTCCCTCT 57.063 37.500 0.00 0.00 0.00 3.69
856 874 7.548427 GGTAAGTCAAGTAAAACATACTCCCTC 59.452 40.741 0.00 0.00 0.00 4.30
857 875 7.016858 TGGTAAGTCAAGTAAAACATACTCCCT 59.983 37.037 0.00 0.00 0.00 4.20
858 876 7.163441 TGGTAAGTCAAGTAAAACATACTCCC 58.837 38.462 0.00 0.00 0.00 4.30
859 877 7.333672 CCTGGTAAGTCAAGTAAAACATACTCC 59.666 40.741 0.00 0.00 0.00 3.85
860 878 8.092687 TCCTGGTAAGTCAAGTAAAACATACTC 58.907 37.037 0.00 0.00 0.00 2.59
861 879 7.876582 GTCCTGGTAAGTCAAGTAAAACATACT 59.123 37.037 0.00 0.00 0.00 2.12
862 880 7.118825 GGTCCTGGTAAGTCAAGTAAAACATAC 59.881 40.741 0.00 0.00 0.00 2.39
869 887 8.849543 ATTATAGGTCCTGGTAAGTCAAGTAA 57.150 34.615 0.00 0.00 0.00 2.24
870 888 8.849543 AATTATAGGTCCTGGTAAGTCAAGTA 57.150 34.615 0.00 0.00 0.00 2.24
985 1005 4.406456 TGGTACATCAAGAAATGCCTTGT 58.594 39.130 0.00 0.00 42.95 3.16
1134 1154 1.610379 GGCTTGGGAAAGGCCATGT 60.610 57.895 5.01 0.00 44.69 3.21
1383 1403 4.514066 GTCGTGGACATTTCCTTGTACTTT 59.486 41.667 0.00 0.00 43.31 2.66
1399 1419 2.050714 GTCGTGCTTCGTCGTGGA 60.051 61.111 0.00 0.00 40.80 4.02
1404 1424 2.717809 GAAGGCGTCGTGCTTCGTC 61.718 63.158 0.00 0.00 45.43 4.20
1407 1427 2.048127 AGGAAGGCGTCGTGCTTC 60.048 61.111 0.00 0.00 45.43 3.86
1418 1438 3.950395 GGTCAGAAATGATTCCAGGAAGG 59.050 47.826 8.20 0.00 36.12 3.46
1437 1457 5.805994 CAGTTTCTTGTAAGATCCTACGGTC 59.194 44.000 0.00 0.00 34.49 4.79
1600 1620 8.609483 AGCATGTTCTATCTATTCCATATTGGT 58.391 33.333 0.00 0.00 39.03 3.67
1604 1624 9.664332 GTTCAGCATGTTCTATCTATTCCATAT 57.336 33.333 0.00 0.00 37.40 1.78
1608 1628 7.170658 GTCTGTTCAGCATGTTCTATCTATTCC 59.829 40.741 0.00 0.00 37.40 3.01
1644 1664 5.112686 GGAAATACTACTGAGACTGGCAAG 58.887 45.833 0.00 0.00 0.00 4.01
1650 1670 4.949121 ACCCTGGAAATACTACTGAGACT 58.051 43.478 0.00 0.00 0.00 3.24
1674 1694 7.278875 TGTATGGCAAAACTTCCTTCAAATTT 58.721 30.769 0.00 0.00 0.00 1.82
1677 1697 5.860941 TGTATGGCAAAACTTCCTTCAAA 57.139 34.783 0.00 0.00 0.00 2.69
1679 1699 4.646945 TGTTGTATGGCAAAACTTCCTTCA 59.353 37.500 10.97 0.00 39.03 3.02
1681 1701 5.606348 TTGTTGTATGGCAAAACTTCCTT 57.394 34.783 10.97 0.00 39.03 3.36
1682 1702 5.806654 ATTGTTGTATGGCAAAACTTCCT 57.193 34.783 10.97 0.00 39.03 3.36
1683 1703 7.954788 TTTATTGTTGTATGGCAAAACTTCC 57.045 32.000 10.97 0.00 39.03 3.46
1684 1704 9.202273 TCATTTATTGTTGTATGGCAAAACTTC 57.798 29.630 10.97 3.39 39.03 3.01
1685 1705 9.723601 ATCATTTATTGTTGTATGGCAAAACTT 57.276 25.926 10.97 3.79 39.03 2.66
1687 1707 7.904461 GCATCATTTATTGTTGTATGGCAAAAC 59.096 33.333 0.00 0.00 39.03 2.43
1688 1708 7.823310 AGCATCATTTATTGTTGTATGGCAAAA 59.177 29.630 0.00 0.00 39.03 2.44
1689 1709 7.278203 CAGCATCATTTATTGTTGTATGGCAAA 59.722 33.333 0.00 0.00 39.03 3.68
1690 1710 6.757478 CAGCATCATTTATTGTTGTATGGCAA 59.243 34.615 0.00 0.00 34.16 4.52
1692 1712 6.506147 TCAGCATCATTTATTGTTGTATGGC 58.494 36.000 0.00 0.00 0.00 4.40
1696 1716 9.791820 CTGAATTCAGCATCATTTATTGTTGTA 57.208 29.630 21.96 0.00 37.15 2.41
1697 1717 8.697846 CTGAATTCAGCATCATTTATTGTTGT 57.302 30.769 21.96 0.00 37.15 3.32
1904 1940 4.794278 TGCTCGTCTCCATGTAAACTTA 57.206 40.909 0.00 0.00 0.00 2.24
2042 2078 8.375506 AGACAACTGAACTATTCCTATTTGTCA 58.624 33.333 11.88 0.00 0.00 3.58
2043 2079 8.779354 AGACAACTGAACTATTCCTATTTGTC 57.221 34.615 0.00 0.00 0.00 3.18
2044 2080 8.598041 AGAGACAACTGAACTATTCCTATTTGT 58.402 33.333 0.00 0.00 0.00 2.83
2045 2081 8.877779 CAGAGACAACTGAACTATTCCTATTTG 58.122 37.037 0.00 0.00 39.94 2.32
2046 2082 8.598041 ACAGAGACAACTGAACTATTCCTATTT 58.402 33.333 0.00 0.00 40.63 1.40
2088 2136 6.238320 GCACATATAACAAAAGAGAGAGGCAG 60.238 42.308 0.00 0.00 0.00 4.85
2121 2169 2.943033 TGCGCCTCTAAGAATTTTAGCC 59.057 45.455 4.18 0.00 0.00 3.93
2136 2184 1.348036 AGTCTAACTCCTTTTGCGCCT 59.652 47.619 4.18 0.00 0.00 5.52
2302 2350 1.585297 CTGGCAAAGCTTGGGTTTTG 58.415 50.000 0.00 0.00 43.37 2.44
2350 2398 3.305950 CGGCACATTCCTTTGAAATTGGA 60.306 43.478 0.00 0.00 33.32 3.53
2499 2547 0.178984 CATACCTGCCATGGCCATCA 60.179 55.000 33.44 16.74 41.09 3.07
2560 2609 3.508012 TCACTTGGTAGCTCTTCTGAGAC 59.492 47.826 0.00 0.00 42.73 3.36
2576 2625 6.093082 TGTGCAGACATTCTTATGATCACTTG 59.907 38.462 0.00 0.00 35.65 3.16
2630 2679 3.679389 AGAAACTGCTGGTGTATGGAAG 58.321 45.455 0.00 0.00 0.00 3.46
2646 2695 5.379187 TCCAAAGTTGTAACCCCTAGAAAC 58.621 41.667 0.00 0.00 0.00 2.78
2701 2750 3.992943 TGGGACACGGAACATATTCTT 57.007 42.857 0.00 0.00 34.98 2.52
2757 2828 6.828785 ACCACAAGAGAGAACAAAATGTTAGT 59.171 34.615 0.00 0.00 41.28 2.24
2771 2842 1.869767 GTCAGTGCAACCACAAGAGAG 59.130 52.381 0.00 0.00 44.53 3.20
2778 2849 1.331756 CAAGACTGTCAGTGCAACCAC 59.668 52.381 11.04 0.00 42.39 4.16
2801 2873 4.408182 AAGGATACGCAGCTTTGTAGAT 57.592 40.909 1.72 0.00 46.39 1.98
2812 2884 2.799126 ATCCACCAAAAGGATACGCA 57.201 45.000 0.00 0.00 43.90 5.24
2818 2890 4.288366 TCTGACATGTATCCACCAAAAGGA 59.712 41.667 0.00 0.00 39.97 3.36
2833 2905 3.495001 CAGCAGCTATCACATCTGACATG 59.505 47.826 0.00 0.00 0.00 3.21
2867 2939 2.095617 TCAGCAAACAATGTGATCAGCG 60.096 45.455 0.00 0.00 0.00 5.18
2869 2941 4.384846 GCTTTCAGCAAACAATGTGATCAG 59.615 41.667 0.00 0.00 41.89 2.90
2898 2970 8.573035 GGGAGACTTTAACATACAAATCAAACA 58.427 33.333 0.00 0.00 0.00 2.83
2911 2983 3.650942 AGGTCACATGGGAGACTTTAACA 59.349 43.478 0.00 0.00 35.30 2.41
2932 3004 2.771089 TCTTCTACAGCCTGCAAACAG 58.229 47.619 0.00 0.00 44.05 3.16
2939 3011 2.736719 CGACACCATCTTCTACAGCCTG 60.737 54.545 0.00 0.00 0.00 4.85
2944 3016 4.801330 AACATCGACACCATCTTCTACA 57.199 40.909 0.00 0.00 0.00 2.74
3145 3217 2.049433 CGGTCCGTTGTCGAAGCT 60.049 61.111 2.08 0.00 39.71 3.74
3290 3387 8.082242 AGATGGTAGAAACAAATTAAGCAACAC 58.918 33.333 0.00 0.00 0.00 3.32
3428 3525 9.261035 TGAACTAGAGATCTTATGAAGACCTTT 57.739 33.333 0.00 0.00 41.01 3.11
3560 3657 4.749598 TCACCGGAATAACGATCAATGATG 59.250 41.667 9.46 0.00 35.47 3.07
3603 3700 3.642848 GGTACCACGGTAGGAAATATGGA 59.357 47.826 7.15 0.00 0.00 3.41
3619 3716 1.072266 AACCATGGCTGAAGGTACCA 58.928 50.000 15.94 0.00 37.99 3.25
3710 3831 5.098893 CAGAAGACGGTTCATCAGAGTTAG 58.901 45.833 3.00 0.00 0.00 2.34
3717 3838 2.143122 GTTGCAGAAGACGGTTCATCA 58.857 47.619 3.00 0.00 0.00 3.07
3718 3839 2.158449 CAGTTGCAGAAGACGGTTCATC 59.842 50.000 3.00 0.00 0.00 2.92
3719 3840 2.146342 CAGTTGCAGAAGACGGTTCAT 58.854 47.619 3.00 0.00 0.00 2.57
3724 3845 1.071471 ACCCAGTTGCAGAAGACGG 59.929 57.895 0.00 0.00 0.00 4.79
3893 4014 0.739813 GCGCGTTCTCTATGTTGGGT 60.740 55.000 8.43 0.00 0.00 4.51
4211 4332 3.186047 CCCATGTCGAACGGCGTC 61.186 66.667 15.17 6.18 41.80 5.19
4265 4386 4.681978 GCGTCGAACACCAGGCCT 62.682 66.667 0.00 0.00 0.00 5.19
4361 4482 4.129737 CGTGACGTCGGGCAGGAT 62.130 66.667 11.62 0.00 0.00 3.24
4471 4592 2.743752 TACGTCTCGTTCTCCGCGG 61.744 63.158 22.12 22.12 41.54 6.46
4613 4734 1.448540 CACCTCGCCGAAGCTGAAT 60.449 57.895 0.00 0.00 36.60 2.57
4736 4857 5.779922 CAAGTACGTATACACCAGGCATAT 58.220 41.667 0.00 0.00 33.30 1.78
4753 4874 7.970614 GTATACCTATACCCATAACGCAAGTAC 59.029 40.741 0.00 0.00 40.49 2.73
4754 4875 7.890127 AGTATACCTATACCCATAACGCAAGTA 59.110 37.037 0.00 0.00 44.37 2.24
4755 4876 6.723052 AGTATACCTATACCCATAACGCAAGT 59.277 38.462 0.00 0.00 45.90 3.16
4756 4877 7.166691 AGTATACCTATACCCATAACGCAAG 57.833 40.000 0.00 0.00 39.42 4.01
4757 4878 7.890127 AGTAGTATACCTATACCCATAACGCAA 59.110 37.037 0.00 0.00 44.47 4.85
4758 4879 7.405292 AGTAGTATACCTATACCCATAACGCA 58.595 38.462 0.00 0.00 44.47 5.24
4775 4901 8.538701 GCTCCCTCTGTATACAGTAGTAGTATA 58.461 40.741 27.83 8.51 44.12 1.47
4776 4902 7.396418 GCTCCCTCTGTATACAGTAGTAGTAT 58.604 42.308 27.83 0.00 44.12 2.12
4779 4905 5.005094 GGCTCCCTCTGTATACAGTAGTAG 58.995 50.000 27.83 21.35 44.12 2.57
4801 4927 9.226345 GCATTAGTCTAAATTTTTCATTCTCGG 57.774 33.333 0.00 0.00 0.00 4.63
4802 4928 8.937932 CGCATTAGTCTAAATTTTTCATTCTCG 58.062 33.333 0.00 0.00 0.00 4.04
4803 4929 9.226345 CCGCATTAGTCTAAATTTTTCATTCTC 57.774 33.333 0.00 0.00 0.00 2.87
4804 4930 8.956426 TCCGCATTAGTCTAAATTTTTCATTCT 58.044 29.630 0.00 0.00 0.00 2.40
4805 4931 9.226345 CTCCGCATTAGTCTAAATTTTTCATTC 57.774 33.333 0.00 0.00 0.00 2.67
4806 4932 7.702348 GCTCCGCATTAGTCTAAATTTTTCATT 59.298 33.333 0.00 0.00 0.00 2.57
4807 4933 7.196331 GCTCCGCATTAGTCTAAATTTTTCAT 58.804 34.615 0.00 0.00 0.00 2.57
4808 4934 6.404293 GGCTCCGCATTAGTCTAAATTTTTCA 60.404 38.462 0.00 0.00 0.00 2.69
4809 4935 5.971792 GGCTCCGCATTAGTCTAAATTTTTC 59.028 40.000 0.00 0.00 0.00 2.29
4810 4936 5.652452 AGGCTCCGCATTAGTCTAAATTTTT 59.348 36.000 0.00 0.00 0.00 1.94
4811 4937 5.193679 AGGCTCCGCATTAGTCTAAATTTT 58.806 37.500 0.00 0.00 0.00 1.82
4812 4938 4.781934 AGGCTCCGCATTAGTCTAAATTT 58.218 39.130 0.00 0.00 0.00 1.82
4813 4939 4.381411 GAGGCTCCGCATTAGTCTAAATT 58.619 43.478 2.15 0.00 0.00 1.82
4814 4940 3.553096 CGAGGCTCCGCATTAGTCTAAAT 60.553 47.826 9.32 0.00 0.00 1.40
4815 4941 2.223735 CGAGGCTCCGCATTAGTCTAAA 60.224 50.000 9.32 0.00 0.00 1.85
4816 4942 1.337071 CGAGGCTCCGCATTAGTCTAA 59.663 52.381 9.32 0.00 0.00 2.10
4817 4943 0.952280 CGAGGCTCCGCATTAGTCTA 59.048 55.000 9.32 0.00 0.00 2.59
4818 4944 1.736586 CGAGGCTCCGCATTAGTCT 59.263 57.895 9.32 0.00 0.00 3.24
4819 4945 1.300233 CCGAGGCTCCGCATTAGTC 60.300 63.158 9.32 0.00 0.00 2.59
4820 4946 0.754217 TACCGAGGCTCCGCATTAGT 60.754 55.000 9.32 0.57 0.00 2.24
4821 4947 0.318784 GTACCGAGGCTCCGCATTAG 60.319 60.000 9.32 0.00 0.00 1.73
4822 4948 1.038681 TGTACCGAGGCTCCGCATTA 61.039 55.000 9.32 0.00 0.00 1.90
4823 4949 1.686325 ATGTACCGAGGCTCCGCATT 61.686 55.000 9.32 0.00 0.00 3.56
4824 4950 2.088674 GATGTACCGAGGCTCCGCAT 62.089 60.000 9.32 8.05 0.00 4.73
4825 4951 2.758327 ATGTACCGAGGCTCCGCA 60.758 61.111 9.32 3.29 0.00 5.69
4826 4952 2.027751 GATGTACCGAGGCTCCGC 59.972 66.667 9.32 0.00 0.00 5.54
4827 4953 1.655329 GAGATGTACCGAGGCTCCG 59.345 63.158 9.32 4.97 0.00 4.63
4828 4954 0.755698 TGGAGATGTACCGAGGCTCC 60.756 60.000 9.32 0.00 44.18 4.70
4829 4955 1.112113 TTGGAGATGTACCGAGGCTC 58.888 55.000 3.87 3.87 0.00 4.70
4830 4956 0.824759 GTTGGAGATGTACCGAGGCT 59.175 55.000 0.00 0.00 0.00 4.58
4831 4957 0.527817 CGTTGGAGATGTACCGAGGC 60.528 60.000 0.00 0.00 0.00 4.70
4832 4958 0.102481 CCGTTGGAGATGTACCGAGG 59.898 60.000 0.00 0.00 0.00 4.63
4833 4959 0.527817 GCCGTTGGAGATGTACCGAG 60.528 60.000 0.00 0.00 0.00 4.63
4834 4960 1.252215 TGCCGTTGGAGATGTACCGA 61.252 55.000 0.00 0.00 0.00 4.69
4835 4961 0.390603 TTGCCGTTGGAGATGTACCG 60.391 55.000 0.00 0.00 0.00 4.02
4836 4962 1.084289 GTTGCCGTTGGAGATGTACC 58.916 55.000 0.00 0.00 0.00 3.34
4837 4963 1.084289 GGTTGCCGTTGGAGATGTAC 58.916 55.000 0.00 0.00 0.00 2.90
4838 4964 0.035820 GGGTTGCCGTTGGAGATGTA 60.036 55.000 0.00 0.00 0.00 2.29
4839 4965 1.303317 GGGTTGCCGTTGGAGATGT 60.303 57.895 0.00 0.00 0.00 3.06
4840 4966 2.398554 CGGGTTGCCGTTGGAGATG 61.399 63.158 0.00 0.00 0.00 2.90
4841 4967 2.046314 CGGGTTGCCGTTGGAGAT 60.046 61.111 0.00 0.00 0.00 2.75
4844 4970 4.877619 TTGCGGGTTGCCGTTGGA 62.878 61.111 0.00 0.00 45.60 3.53
4845 4971 2.707529 ATTTTGCGGGTTGCCGTTGG 62.708 55.000 0.00 0.00 45.60 3.77
4846 4972 0.878086 AATTTTGCGGGTTGCCGTTG 60.878 50.000 0.00 0.00 45.60 4.10
4847 4973 0.179070 AAATTTTGCGGGTTGCCGTT 60.179 45.000 0.00 0.00 45.60 4.44
4848 4974 0.598942 GAAATTTTGCGGGTTGCCGT 60.599 50.000 0.00 0.00 45.60 5.68
4849 4975 0.319469 AGAAATTTTGCGGGTTGCCG 60.319 50.000 0.00 0.00 45.60 5.69
4850 4976 1.428448 GAGAAATTTTGCGGGTTGCC 58.572 50.000 0.00 0.00 45.60 4.52
4851 4977 1.428448 GGAGAAATTTTGCGGGTTGC 58.572 50.000 0.00 0.00 46.70 4.17
4852 4978 1.668628 CGGGAGAAATTTTGCGGGTTG 60.669 52.381 0.00 0.00 0.00 3.77
4853 4979 0.601057 CGGGAGAAATTTTGCGGGTT 59.399 50.000 0.00 0.00 0.00 4.11
4854 4980 1.873270 GCGGGAGAAATTTTGCGGGT 61.873 55.000 0.00 0.00 0.00 5.28
4855 4981 1.153842 GCGGGAGAAATTTTGCGGG 60.154 57.895 0.00 0.00 0.00 6.13
4856 4982 0.173255 ATGCGGGAGAAATTTTGCGG 59.827 50.000 0.00 0.00 0.00 5.69
4857 4983 1.548986 GATGCGGGAGAAATTTTGCG 58.451 50.000 0.00 0.00 0.00 4.85
4858 4984 1.798813 CGGATGCGGGAGAAATTTTGC 60.799 52.381 0.00 0.00 0.00 3.68
4859 4985 1.472480 ACGGATGCGGGAGAAATTTTG 59.528 47.619 12.44 0.00 0.00 2.44
4860 4986 1.743394 GACGGATGCGGGAGAAATTTT 59.257 47.619 12.44 0.00 0.00 1.82
4861 4987 1.379527 GACGGATGCGGGAGAAATTT 58.620 50.000 12.44 0.00 0.00 1.82
4862 4988 0.463833 GGACGGATGCGGGAGAAATT 60.464 55.000 12.44 0.00 0.00 1.82
4863 4989 1.146263 GGACGGATGCGGGAGAAAT 59.854 57.895 12.44 0.00 0.00 2.17
4864 4990 2.582436 GGACGGATGCGGGAGAAA 59.418 61.111 12.44 0.00 0.00 2.52
4865 4991 3.833645 CGGACGGATGCGGGAGAA 61.834 66.667 12.44 0.00 35.75 2.87
4872 4998 3.083600 CTTGTTCGCGGACGGATGC 62.084 63.158 13.91 0.00 40.63 3.91
4873 4999 1.413767 CTCTTGTTCGCGGACGGATG 61.414 60.000 13.91 2.83 40.63 3.51
4874 5000 1.153823 CTCTTGTTCGCGGACGGAT 60.154 57.895 13.91 0.00 40.63 4.18
4875 5001 2.257371 CTCTTGTTCGCGGACGGA 59.743 61.111 13.91 12.53 40.63 4.69
4876 5002 2.809601 CCTCTTGTTCGCGGACGG 60.810 66.667 13.91 8.53 40.63 4.79
4877 5003 2.809601 CCCTCTTGTTCGCGGACG 60.810 66.667 13.91 0.00 42.01 4.79
4878 5004 1.737008 GTCCCTCTTGTTCGCGGAC 60.737 63.158 11.62 11.62 36.52 4.79
4879 5005 0.609957 TAGTCCCTCTTGTTCGCGGA 60.610 55.000 6.13 0.00 0.00 5.54
4880 5006 0.179134 CTAGTCCCTCTTGTTCGCGG 60.179 60.000 6.13 0.00 0.00 6.46
4881 5007 0.526662 ACTAGTCCCTCTTGTTCGCG 59.473 55.000 0.00 0.00 0.00 5.87
4882 5008 2.608268 GAACTAGTCCCTCTTGTTCGC 58.392 52.381 0.00 0.00 44.10 4.70
4885 5011 4.020128 GTCCATGAACTAGTCCCTCTTGTT 60.020 45.833 0.00 0.00 42.72 2.83
4886 5012 3.515901 GTCCATGAACTAGTCCCTCTTGT 59.484 47.826 0.00 0.00 33.92 3.16
4887 5013 3.515502 TGTCCATGAACTAGTCCCTCTTG 59.484 47.826 0.00 0.00 0.00 3.02
4888 5014 3.791320 TGTCCATGAACTAGTCCCTCTT 58.209 45.455 0.00 0.00 0.00 2.85
4889 5015 3.474798 TGTCCATGAACTAGTCCCTCT 57.525 47.619 0.00 0.00 0.00 3.69
4890 5016 3.181461 CCATGTCCATGAACTAGTCCCTC 60.181 52.174 8.82 0.00 41.20 4.30
4891 5017 2.774234 CCATGTCCATGAACTAGTCCCT 59.226 50.000 8.82 0.00 41.20 4.20
4892 5018 2.771943 TCCATGTCCATGAACTAGTCCC 59.228 50.000 8.82 0.00 41.20 4.46
4893 5019 4.384056 CATCCATGTCCATGAACTAGTCC 58.616 47.826 8.82 0.00 41.20 3.85
4894 5020 3.812053 GCATCCATGTCCATGAACTAGTC 59.188 47.826 8.82 0.00 41.20 2.59
4895 5021 3.742327 CGCATCCATGTCCATGAACTAGT 60.742 47.826 8.82 0.00 41.20 2.57
4896 5022 2.804527 CGCATCCATGTCCATGAACTAG 59.195 50.000 8.82 0.00 41.20 2.57
4897 5023 2.433970 TCGCATCCATGTCCATGAACTA 59.566 45.455 8.82 0.00 41.20 2.24
4898 5024 1.210234 TCGCATCCATGTCCATGAACT 59.790 47.619 8.82 0.00 41.20 3.01
4899 5025 1.667236 TCGCATCCATGTCCATGAAC 58.333 50.000 8.82 0.00 41.20 3.18
4900 5026 2.416680 TTCGCATCCATGTCCATGAA 57.583 45.000 8.82 0.00 41.20 2.57
4901 5027 2.093021 TCTTTCGCATCCATGTCCATGA 60.093 45.455 8.82 0.00 41.20 3.07
4902 5028 2.032550 GTCTTTCGCATCCATGTCCATG 59.967 50.000 0.14 0.14 38.51 3.66
4903 5029 2.292267 GTCTTTCGCATCCATGTCCAT 58.708 47.619 0.00 0.00 0.00 3.41
4904 5030 1.678728 GGTCTTTCGCATCCATGTCCA 60.679 52.381 0.00 0.00 0.00 4.02
4905 5031 1.017387 GGTCTTTCGCATCCATGTCC 58.983 55.000 0.00 0.00 0.00 4.02
4906 5032 2.029838 AGGTCTTTCGCATCCATGTC 57.970 50.000 0.00 0.00 0.00 3.06
4907 5033 2.290260 TGAAGGTCTTTCGCATCCATGT 60.290 45.455 0.00 0.00 38.71 3.21
4908 5034 2.358957 TGAAGGTCTTTCGCATCCATG 58.641 47.619 0.00 0.00 38.71 3.66
4909 5035 2.787473 TGAAGGTCTTTCGCATCCAT 57.213 45.000 0.00 0.00 38.71 3.41
4910 5036 2.632377 GATGAAGGTCTTTCGCATCCA 58.368 47.619 0.00 0.00 38.71 3.41
4911 5037 1.943340 GGATGAAGGTCTTTCGCATCC 59.057 52.381 11.59 11.59 45.55 3.51
4912 5038 2.632377 TGGATGAAGGTCTTTCGCATC 58.368 47.619 0.00 0.00 38.71 3.91
4913 5039 2.749621 GTTGGATGAAGGTCTTTCGCAT 59.250 45.455 0.00 0.00 38.71 4.73
4914 5040 2.151202 GTTGGATGAAGGTCTTTCGCA 58.849 47.619 0.00 0.00 38.71 5.10
4915 5041 1.468914 GGTTGGATGAAGGTCTTTCGC 59.531 52.381 0.00 0.00 38.71 4.70
4916 5042 1.732259 CGGTTGGATGAAGGTCTTTCG 59.268 52.381 0.00 0.00 38.71 3.46
4917 5043 2.779506 ACGGTTGGATGAAGGTCTTTC 58.220 47.619 0.00 0.00 36.29 2.62
4918 5044 2.951229 ACGGTTGGATGAAGGTCTTT 57.049 45.000 0.00 0.00 0.00 2.52
4919 5045 2.904434 ACTACGGTTGGATGAAGGTCTT 59.096 45.455 0.00 0.00 0.00 3.01
4920 5046 2.537143 ACTACGGTTGGATGAAGGTCT 58.463 47.619 0.00 0.00 0.00 3.85
4921 5047 3.000727 CAACTACGGTTGGATGAAGGTC 58.999 50.000 1.43 0.00 46.37 3.85
4922 5048 3.053831 CAACTACGGTTGGATGAAGGT 57.946 47.619 1.43 0.00 46.37 3.50
4932 5058 2.546778 CGGATGTATGCAACTACGGTT 58.453 47.619 0.00 0.00 35.86 4.44
4933 5059 1.202486 CCGGATGTATGCAACTACGGT 60.202 52.381 0.00 0.00 35.80 4.83
4934 5060 1.497991 CCGGATGTATGCAACTACGG 58.502 55.000 0.00 0.00 34.67 4.02
4935 5061 0.859232 GCCGGATGTATGCAACTACG 59.141 55.000 5.05 0.00 0.00 3.51
4936 5062 1.202651 AGGCCGGATGTATGCAACTAC 60.203 52.381 5.05 0.00 0.00 2.73
4937 5063 1.128200 AGGCCGGATGTATGCAACTA 58.872 50.000 5.05 0.00 0.00 2.24
4938 5064 1.128200 TAGGCCGGATGTATGCAACT 58.872 50.000 5.05 0.00 0.00 3.16
4939 5065 2.076863 GATAGGCCGGATGTATGCAAC 58.923 52.381 5.05 0.00 0.00 4.17
4940 5066 1.977854 AGATAGGCCGGATGTATGCAA 59.022 47.619 5.05 0.00 0.00 4.08
4941 5067 1.644509 AGATAGGCCGGATGTATGCA 58.355 50.000 5.05 0.00 0.00 3.96
4942 5068 2.770164 AAGATAGGCCGGATGTATGC 57.230 50.000 5.05 0.00 0.00 3.14
4973 5099 6.957077 GCTATTTGATCGTGCGTACTTAAAAA 59.043 34.615 1.24 0.00 0.00 1.94
4974 5100 6.091034 TGCTATTTGATCGTGCGTACTTAAAA 59.909 34.615 1.24 0.00 0.00 1.52
4975 5101 5.577554 TGCTATTTGATCGTGCGTACTTAAA 59.422 36.000 1.24 0.00 0.00 1.52
4976 5102 5.103687 TGCTATTTGATCGTGCGTACTTAA 58.896 37.500 1.24 0.00 0.00 1.85
4977 5103 4.674475 TGCTATTTGATCGTGCGTACTTA 58.326 39.130 1.24 0.00 0.00 2.24
4978 5104 3.517602 TGCTATTTGATCGTGCGTACTT 58.482 40.909 1.24 0.00 0.00 2.24
4979 5105 3.116300 CTGCTATTTGATCGTGCGTACT 58.884 45.455 1.24 0.00 0.00 2.73
4980 5106 2.347661 GCTGCTATTTGATCGTGCGTAC 60.348 50.000 0.00 0.00 0.00 3.67
4981 5107 1.858458 GCTGCTATTTGATCGTGCGTA 59.142 47.619 0.00 0.00 0.00 4.42
4982 5108 0.652592 GCTGCTATTTGATCGTGCGT 59.347 50.000 0.00 0.00 0.00 5.24
4983 5109 0.652071 TGCTGCTATTTGATCGTGCG 59.348 50.000 0.00 0.00 0.00 5.34
4984 5110 2.647337 CATGCTGCTATTTGATCGTGC 58.353 47.619 0.00 0.00 0.00 5.34
4985 5111 2.032426 TGCATGCTGCTATTTGATCGTG 59.968 45.455 20.33 0.00 45.31 4.35
4986 5112 2.291365 TGCATGCTGCTATTTGATCGT 58.709 42.857 20.33 0.00 45.31 3.73
4987 5113 3.234386 CATGCATGCTGCTATTTGATCG 58.766 45.455 20.33 0.00 45.31 3.69
4988 5114 3.254903 TCCATGCATGCTGCTATTTGATC 59.745 43.478 21.69 0.00 45.31 2.92
4989 5115 3.227614 TCCATGCATGCTGCTATTTGAT 58.772 40.909 21.69 0.00 45.31 2.57
4990 5116 2.621526 CTCCATGCATGCTGCTATTTGA 59.378 45.455 21.69 8.56 45.31 2.69
4991 5117 2.621526 TCTCCATGCATGCTGCTATTTG 59.378 45.455 21.69 4.35 45.31 2.32
4992 5118 2.940158 TCTCCATGCATGCTGCTATTT 58.060 42.857 21.69 0.00 45.31 1.40
4993 5119 2.651382 TCTCCATGCATGCTGCTATT 57.349 45.000 21.69 0.00 45.31 1.73
4994 5120 2.651382 TTCTCCATGCATGCTGCTAT 57.349 45.000 21.69 0.02 45.31 2.97
4995 5121 2.651382 ATTCTCCATGCATGCTGCTA 57.349 45.000 21.69 5.28 45.31 3.49
4996 5122 2.105993 TCTATTCTCCATGCATGCTGCT 59.894 45.455 21.69 6.70 45.31 4.24
4997 5123 2.501261 TCTATTCTCCATGCATGCTGC 58.499 47.619 21.69 0.00 45.29 5.25
4998 5124 4.634883 GGTATCTATTCTCCATGCATGCTG 59.365 45.833 21.69 14.94 0.00 4.41
4999 5125 4.622457 CGGTATCTATTCTCCATGCATGCT 60.622 45.833 21.69 1.07 0.00 3.79
5000 5126 3.620374 CGGTATCTATTCTCCATGCATGC 59.380 47.826 21.69 11.82 0.00 4.06
5001 5127 4.825422 ACGGTATCTATTCTCCATGCATG 58.175 43.478 20.19 20.19 0.00 4.06
5002 5128 4.528206 TGACGGTATCTATTCTCCATGCAT 59.472 41.667 0.00 0.00 0.00 3.96
5003 5129 3.895041 TGACGGTATCTATTCTCCATGCA 59.105 43.478 0.00 0.00 0.00 3.96
5028 5154 6.150641 GGACGTACAATATGGACTGCTATCTA 59.849 42.308 0.00 0.00 0.00 1.98
5035 5161 6.759356 TGTTAATGGACGTACAATATGGACTG 59.241 38.462 3.58 0.00 0.00 3.51
5061 5191 2.829120 GCTCCTCCTTGCCCTACTATAG 59.171 54.545 0.00 0.00 0.00 1.31
5068 5198 0.038890 GAAAAGCTCCTCCTTGCCCT 59.961 55.000 0.00 0.00 0.00 5.19
5069 5199 0.967887 GGAAAAGCTCCTCCTTGCCC 60.968 60.000 6.77 0.00 41.61 5.36
5098 5228 1.792367 CGATCACTGTTGTTTGCGAGA 59.208 47.619 0.00 0.00 0.00 4.04
5111 5241 0.675837 AATGTGCTGCAGCGATCACT 60.676 50.000 32.11 18.46 45.83 3.41
5146 5276 3.316029 CACACTTTCTTTGCATGTCCAGA 59.684 43.478 0.00 0.00 0.00 3.86
5165 5296 2.364970 CAGAACCTTTGGATTTGGCACA 59.635 45.455 0.00 0.00 0.00 4.57
5181 5312 4.291540 TGAAGTTGTTGCATCACAGAAC 57.708 40.909 0.00 0.00 0.00 3.01
5183 5314 4.198530 TCTTGAAGTTGTTGCATCACAGA 58.801 39.130 0.00 0.00 0.00 3.41
5196 5327 6.894103 AGAAGCCCATCATAATTCTTGAAGTT 59.106 34.615 0.00 0.00 0.00 2.66
5197 5328 6.430007 AGAAGCCCATCATAATTCTTGAAGT 58.570 36.000 0.00 0.00 0.00 3.01
5212 5343 4.322057 AAGGTCATGTTAAGAAGCCCAT 57.678 40.909 0.00 0.00 0.00 4.00
5232 5363 8.072321 TGAATGCTTTACAAGGGCAATATTAA 57.928 30.769 0.00 0.00 39.46 1.40
5253 5385 2.948979 TGCGTGGAAGAACTGTTTGAAT 59.051 40.909 0.00 0.00 0.00 2.57
5271 5403 2.554142 TGGATCTCTTAACTGCATGCG 58.446 47.619 14.09 10.50 0.00 4.73
5281 5420 3.873801 GCCTGGTTTGCTTGGATCTCTTA 60.874 47.826 0.00 0.00 0.00 2.10
5300 5439 2.503356 CTCAGAAGTAAGATGGTGGCCT 59.497 50.000 3.32 0.00 0.00 5.19
5308 5447 6.305272 TCTTGGCAATCTCAGAAGTAAGAT 57.695 37.500 0.00 0.00 33.67 2.40
5352 5491 4.773149 ACCTCAGTACCTAAGAGAACCAAG 59.227 45.833 0.00 0.00 0.00 3.61
5363 5502 2.440409 GTGTTCGGACCTCAGTACCTA 58.560 52.381 0.00 0.00 0.00 3.08
5397 5536 2.964464 TGTCATGGTCAGGTTTGCAAAT 59.036 40.909 16.21 0.00 0.00 2.32
5398 5537 2.382882 TGTCATGGTCAGGTTTGCAAA 58.617 42.857 8.05 8.05 0.00 3.68
5416 5555 6.233434 TGTCTGAGAGCAAATGTAAAGATGT 58.767 36.000 0.00 0.00 0.00 3.06
5423 5562 3.195610 ACGGATGTCTGAGAGCAAATGTA 59.804 43.478 0.00 0.00 0.00 2.29
5424 5563 2.027745 ACGGATGTCTGAGAGCAAATGT 60.028 45.455 0.00 0.00 0.00 2.71
5428 5567 1.751351 CCTACGGATGTCTGAGAGCAA 59.249 52.381 0.00 0.00 0.00 3.91
5458 5597 2.461110 GCACGACCGCCGATTCATT 61.461 57.895 0.00 0.00 41.76 2.57
5466 5605 2.051345 CAAAAGTGCACGACCGCC 60.051 61.111 12.01 0.00 0.00 6.13
5481 5650 5.127491 ACGATTGACTTTTCTGGTTACCAA 58.873 37.500 5.31 0.00 30.80 3.67
5493 5662 1.519408 CCGTGGGAACGATTGACTTT 58.481 50.000 0.00 0.00 34.64 2.66
5497 5666 0.742990 GATGCCGTGGGAACGATTGA 60.743 55.000 0.00 0.00 34.64 2.57
5532 5701 3.147629 CGTCCGGTCCTATGAAGACTAT 58.852 50.000 0.00 0.00 34.56 2.12
5538 5707 1.046472 ATGGCGTCCGGTCCTATGAA 61.046 55.000 0.00 0.00 0.00 2.57
5559 5729 6.144080 ACAAGACTCTTTTCGATCGTTTGTAG 59.856 38.462 15.94 10.87 0.00 2.74
5576 5746 3.722123 CGTTTTCGTATGCACAAGACTC 58.278 45.455 0.00 0.00 38.65 3.36
5584 5754 3.029564 GCCGGCGTTTTCGTATGCA 62.030 57.895 12.58 0.00 46.03 3.96
5589 5759 2.120355 ATTTTCGCCGGCGTTTTCGT 62.120 50.000 44.16 24.93 46.03 3.85
5613 5783 2.892425 CCGGATGCACTCTTCGCC 60.892 66.667 0.00 0.00 0.00 5.54
5628 5798 2.478033 GGCCGACTAATTTGCCCCG 61.478 63.158 0.00 0.00 37.94 5.73
5637 5807 1.262417 TGACACTGATGGCCGACTAA 58.738 50.000 0.00 0.00 29.67 2.24
5675 5845 0.800683 TCATCGAGTGCTTAACCGCG 60.801 55.000 0.00 0.00 0.00 6.46
5682 5852 0.976641 TCAAGGGTCATCGAGTGCTT 59.023 50.000 0.00 0.00 0.00 3.91
5726 5896 3.753434 CGGAGCGTGCAGAGGAGT 61.753 66.667 0.00 0.00 0.00 3.85
5747 5917 1.883084 GGGATGACGACGATGGTGC 60.883 63.158 0.00 0.00 0.00 5.01
5748 5918 0.528466 CTGGGATGACGACGATGGTG 60.528 60.000 0.00 0.00 0.00 4.17
5749 5919 0.970937 ACTGGGATGACGACGATGGT 60.971 55.000 0.00 0.00 0.00 3.55
5750 5920 1.029681 TACTGGGATGACGACGATGG 58.970 55.000 0.00 0.00 0.00 3.51
5751 5921 1.676529 AGTACTGGGATGACGACGATG 59.323 52.381 0.00 0.00 0.00 3.84
5752 5922 1.948145 GAGTACTGGGATGACGACGAT 59.052 52.381 0.00 0.00 0.00 3.73
5753 5923 1.376543 GAGTACTGGGATGACGACGA 58.623 55.000 0.00 0.00 0.00 4.20
5754 5924 0.381089 GGAGTACTGGGATGACGACG 59.619 60.000 0.00 0.00 0.00 5.12
5755 5925 1.677052 GAGGAGTACTGGGATGACGAC 59.323 57.143 0.00 0.00 0.00 4.34
5756 5926 1.409802 GGAGGAGTACTGGGATGACGA 60.410 57.143 0.00 0.00 0.00 4.20
5757 5927 1.033574 GGAGGAGTACTGGGATGACG 58.966 60.000 0.00 0.00 0.00 4.35
5758 5928 2.432510 CAAGGAGGAGTACTGGGATGAC 59.567 54.545 0.00 0.00 0.00 3.06
5759 5929 2.044492 ACAAGGAGGAGTACTGGGATGA 59.956 50.000 0.00 0.00 0.00 2.92
5760 5930 2.432510 GACAAGGAGGAGTACTGGGATG 59.567 54.545 0.00 0.00 0.00 3.51
5761 5931 2.044492 TGACAAGGAGGAGTACTGGGAT 59.956 50.000 0.00 0.00 0.00 3.85
5762 5932 1.431633 TGACAAGGAGGAGTACTGGGA 59.568 52.381 0.00 0.00 0.00 4.37
5763 5933 1.827969 CTGACAAGGAGGAGTACTGGG 59.172 57.143 0.00 0.00 0.00 4.45
5764 5934 2.494073 GTCTGACAAGGAGGAGTACTGG 59.506 54.545 0.00 0.00 0.00 4.00
5765 5935 2.162608 CGTCTGACAAGGAGGAGTACTG 59.837 54.545 0.00 0.00 0.00 2.74
5766 5936 2.040012 TCGTCTGACAAGGAGGAGTACT 59.960 50.000 8.73 0.00 0.00 2.73
5767 5937 2.162008 GTCGTCTGACAAGGAGGAGTAC 59.838 54.545 8.73 0.00 44.82 2.73
5768 5938 2.434428 GTCGTCTGACAAGGAGGAGTA 58.566 52.381 8.73 0.00 44.82 2.59
5769 5939 1.249407 GTCGTCTGACAAGGAGGAGT 58.751 55.000 8.73 0.00 44.82 3.85
5779 5949 4.291783 GGCACTATATTGAGTCGTCTGAC 58.708 47.826 0.00 0.00 45.86 3.51
5780 5950 3.318275 GGGCACTATATTGAGTCGTCTGA 59.682 47.826 0.00 0.00 0.00 3.27
5781 5951 3.643763 GGGCACTATATTGAGTCGTCTG 58.356 50.000 0.00 0.00 0.00 3.51
5782 5952 2.293677 CGGGCACTATATTGAGTCGTCT 59.706 50.000 0.00 0.00 0.00 4.18
5783 5953 2.034305 ACGGGCACTATATTGAGTCGTC 59.966 50.000 0.00 0.00 0.00 4.20
5784 5954 2.029623 ACGGGCACTATATTGAGTCGT 58.970 47.619 0.00 0.00 0.00 4.34
5785 5955 2.795175 ACGGGCACTATATTGAGTCG 57.205 50.000 0.00 0.00 0.00 4.18
5786 5956 4.579454 TGTACGGGCACTATATTGAGTC 57.421 45.455 0.00 0.00 0.00 3.36
5787 5957 4.799586 GCATGTACGGGCACTATATTGAGT 60.800 45.833 3.91 0.00 0.00 3.41
5788 5958 3.679980 GCATGTACGGGCACTATATTGAG 59.320 47.826 3.91 0.00 0.00 3.02
5789 5959 3.070302 TGCATGTACGGGCACTATATTGA 59.930 43.478 7.12 0.00 34.58 2.57
5790 5960 3.398406 TGCATGTACGGGCACTATATTG 58.602 45.455 7.12 0.00 34.58 1.90
5791 5961 3.762407 TGCATGTACGGGCACTATATT 57.238 42.857 7.12 0.00 34.58 1.28
5798 5968 2.118233 TTGGAGTGCATGTACGGGCA 62.118 55.000 8.36 7.12 37.77 5.36
5799 5969 0.958382 TTTGGAGTGCATGTACGGGC 60.958 55.000 8.36 2.49 0.00 6.13
5800 5970 1.670811 GATTTGGAGTGCATGTACGGG 59.329 52.381 8.36 0.00 0.00 5.28
5801 5971 1.327460 CGATTTGGAGTGCATGTACGG 59.673 52.381 8.36 0.00 0.00 4.02
5802 5972 1.327460 CCGATTTGGAGTGCATGTACG 59.673 52.381 8.36 0.00 42.00 3.67
5803 5973 2.627945 TCCGATTTGGAGTGCATGTAC 58.372 47.619 5.71 5.71 43.74 2.90
5805 5975 3.955145 TCCGATTTGGAGTGCATGT 57.045 47.368 0.00 0.00 43.74 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.