Multiple sequence alignment - TraesCS2B01G409000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G409000 chr2B 100.000 6593 0 0 1 6593 582296774 582303366 0.000000e+00 12176.0
1 TraesCS2B01G409000 chr2B 98.837 86 1 0 2744 2829 297439024 297438939 3.180000e-33 154.0
2 TraesCS2B01G409000 chr2B 94.118 102 4 2 2739 2839 402218119 402218019 3.180000e-33 154.0
3 TraesCS2B01G409000 chr2B 93.243 74 3 2 2828 2899 768661088 768661015 2.510000e-19 108.0
4 TraesCS2B01G409000 chr2B 94.231 52 3 0 2704 2755 625549855 625549906 5.480000e-11 80.5
5 TraesCS2B01G409000 chr2D 95.395 3670 117 28 2884 6543 494640451 494644078 0.000000e+00 5794.0
6 TraesCS2B01G409000 chr2D 95.385 1885 67 9 826 2702 494638576 494640448 0.000000e+00 2981.0
7 TraesCS2B01G409000 chr2D 84.139 517 68 4 42 552 250625930 250626438 7.680000e-134 488.0
8 TraesCS2B01G409000 chr2D 84.663 489 59 5 42 523 476825542 476826021 2.150000e-129 473.0
9 TraesCS2B01G409000 chr2D 83.369 469 62 8 42 504 576207830 576207372 2.840000e-113 420.0
10 TraesCS2B01G409000 chr2D 98.936 94 1 0 2741 2834 592140687 592140594 1.140000e-37 169.0
11 TraesCS2B01G409000 chr2D 94.545 110 3 2 2735 2844 503441215 503441321 4.090000e-37 167.0
12 TraesCS2B01G409000 chr2D 95.745 47 1 1 1 47 182741479 182741434 2.550000e-09 75.0
13 TraesCS2B01G409000 chr2A 94.246 3493 131 34 2884 6359 639069567 639066128 0.000000e+00 5273.0
14 TraesCS2B01G409000 chr2A 94.561 1912 63 9 826 2708 639071463 639069564 0.000000e+00 2916.0
15 TraesCS2B01G409000 chr2A 86.341 205 15 8 6350 6543 639065950 639065748 1.860000e-50 211.0
16 TraesCS2B01G409000 chr2A 94.565 92 5 0 591 682 639073903 639073812 6.890000e-30 143.0
17 TraesCS2B01G409000 chr2A 95.890 73 3 0 2815 2887 700986088 700986016 1.160000e-22 119.0
18 TraesCS2B01G409000 chr2A 98.077 52 1 0 2707 2758 700986271 700986220 2.530000e-14 91.6
19 TraesCS2B01G409000 chr4A 85.246 488 56 6 42 523 471711250 471711727 7.680000e-134 488.0
20 TraesCS2B01G409000 chr4A 84.068 295 32 8 65 353 547205550 547205265 3.030000e-68 270.0
21 TraesCS2B01G409000 chr4A 89.552 67 5 2 2682 2747 624117264 624117329 4.240000e-12 84.2
22 TraesCS2B01G409000 chr4A 95.652 46 1 1 1 46 705130153 705130197 9.170000e-09 73.1
23 TraesCS2B01G409000 chr4A 95.652 46 1 1 1 46 705158365 705158409 9.170000e-09 73.1
24 TraesCS2B01G409000 chr6D 82.258 496 72 8 42 530 336361586 336362072 1.320000e-111 414.0
25 TraesCS2B01G409000 chr6D 89.130 138 13 2 2694 2829 458997677 458997540 3.160000e-38 171.0
26 TraesCS2B01G409000 chr6D 93.878 49 3 0 1 49 316611706 316611658 2.550000e-09 75.0
27 TraesCS2B01G409000 chr1A 79.596 495 79 12 65 552 514860512 514860033 1.060000e-87 335.0
28 TraesCS2B01G409000 chr1A 94.030 67 4 0 2826 2892 340015063 340014997 1.170000e-17 102.0
29 TraesCS2B01G409000 chr1B 77.101 345 59 14 42 378 518866435 518866767 1.460000e-41 182.0
30 TraesCS2B01G409000 chr1B 95.455 66 2 1 2826 2891 572529394 572529458 3.250000e-18 104.0
31 TraesCS2B01G409000 chr6B 98.913 92 0 1 2739 2829 120317564 120317473 5.290000e-36 163.0
32 TraesCS2B01G409000 chr7B 95.146 103 2 3 2734 2834 432933229 432933330 6.840000e-35 159.0
33 TraesCS2B01G409000 chr5B 95.960 99 3 1 2734 2832 35190920 35190823 6.840000e-35 159.0
34 TraesCS2B01G409000 chr5B 94.231 104 3 3 2727 2829 676928088 676928189 8.850000e-34 156.0
35 TraesCS2B01G409000 chr5B 96.825 63 2 0 2826 2888 230015872 230015810 9.040000e-19 106.0
36 TraesCS2B01G409000 chr5B 96.825 63 2 0 2826 2888 316712666 316712604 9.040000e-19 106.0
37 TraesCS2B01G409000 chr5B 92.000 75 5 1 2813 2887 136048463 136048536 3.250000e-18 104.0
38 TraesCS2B01G409000 chr5B 91.781 73 3 3 2829 2898 106364790 106364718 1.510000e-16 99.0
39 TraesCS2B01G409000 chr5B 88.060 67 6 2 2682 2747 686465622 686465687 1.970000e-10 78.7
40 TraesCS2B01G409000 chr5B 90.164 61 3 2 2688 2746 425880236 425880177 7.090000e-10 76.8
41 TraesCS2B01G409000 chr5B 95.455 44 1 1 1 44 73837931 73837973 1.190000e-07 69.4
42 TraesCS2B01G409000 chr5D 80.986 142 22 3 411 548 529753706 529753566 2.510000e-19 108.0
43 TraesCS2B01G409000 chr5D 92.453 53 2 2 1 52 168388771 168388720 2.550000e-09 75.0
44 TraesCS2B01G409000 chr7A 91.667 72 6 0 2816 2887 729073233 729073162 4.210000e-17 100.0
45 TraesCS2B01G409000 chr5A 96.226 53 2 0 2706 2758 578052346 578052398 3.280000e-13 87.9
46 TraesCS2B01G409000 chr4B 93.220 59 0 4 2703 2760 467273745 467273800 4.240000e-12 84.2
47 TraesCS2B01G409000 chr3D 94.000 50 2 1 1 49 23987492 23987541 2.550000e-09 75.0
48 TraesCS2B01G409000 chr3D 93.750 48 2 1 1 48 270215124 270215078 3.300000e-08 71.3
49 TraesCS2B01G409000 chr3B 93.878 49 3 0 1 49 203109524 203109572 2.550000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G409000 chr2B 582296774 582303366 6592 False 12176.00 12176 100.00000 1 6593 1 chr2B.!!$F1 6592
1 TraesCS2B01G409000 chr2D 494638576 494644078 5502 False 4387.50 5794 95.39000 826 6543 2 chr2D.!!$F4 5717
2 TraesCS2B01G409000 chr2D 250625930 250626438 508 False 488.00 488 84.13900 42 552 1 chr2D.!!$F1 510
3 TraesCS2B01G409000 chr2A 639065748 639073903 8155 True 2135.75 5273 92.42825 591 6543 4 chr2A.!!$R1 5952

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 36 0.031721 CGCACCCTACCGTAGAATCC 59.968 60.0 7.16 0.0 0.00 3.01 F
502 509 0.110486 AGAACTGCGGTGGATTTGGT 59.890 50.0 0.00 0.0 0.00 3.67 F
774 806 0.163788 CCATGACGTCACAGTTTCGC 59.836 55.0 22.71 0.0 0.00 4.70 F
2630 4891 0.035317 TTGGAGTTGATCGCACTGCT 59.965 50.0 14.81 0.0 0.00 4.24 F
2723 4984 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.0 0.00 0.0 0.00 3.28 F
2760 5021 0.258194 AGTACTCCCTCCGTTCCGAT 59.742 55.0 0.00 0.0 0.00 4.18 F
2930 5191 0.614697 GCCCCCTTAAAGTGGCATGT 60.615 55.0 0.00 0.0 43.46 3.21 F
3879 6149 0.676151 GCAGAGCTACCTTTGCTGCT 60.676 55.0 12.64 0.0 46.17 4.24 F
4954 7228 0.626382 TGTTTGGTCAGGTTGGTGGA 59.374 50.0 0.00 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1760 4021 1.079127 CAACCCTTCATCGCCGTCT 60.079 57.895 0.00 0.0 0.00 4.18 R
2402 4663 4.537135 ATTTCTTACACCGAGAAGCAGA 57.463 40.909 0.00 0.0 34.84 4.26 R
2704 4965 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.0 0.00 2.73 R
4614 6885 0.176680 CCAGTGCTCGCAGAACCTAT 59.823 55.000 0.00 0.0 34.09 2.57 R
4649 6920 6.870965 AGTCTGCACTGTAATTTGAAGAGTAG 59.129 38.462 0.00 0.0 0.00 2.57 R
4733 7007 4.890158 TTGACTTGGAGAGAGCAATACA 57.110 40.909 0.00 0.0 0.00 2.29 R
4893 7167 4.751767 TTCCATGAAACAAGGTTGCTTT 57.248 36.364 0.00 0.0 0.00 3.51 R
5118 7393 0.820891 AGCGCAATGATGGGGATGAC 60.821 55.000 11.47 0.0 39.74 3.06 R
6224 8500 0.248289 GCAACGAGGGCCTAAGTGTA 59.752 55.000 5.73 0.0 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.587612 TTAATTTGCAGTCGACGCAC 57.412 45.000 26.64 14.54 39.59 5.34
21 22 0.793861 TAATTTGCAGTCGACGCACC 59.206 50.000 26.64 11.38 39.59 5.01
22 23 1.852067 AATTTGCAGTCGACGCACCC 61.852 55.000 26.64 9.86 39.59 4.61
23 24 2.731691 ATTTGCAGTCGACGCACCCT 62.732 55.000 26.64 15.39 39.59 4.34
24 25 2.089887 TTTGCAGTCGACGCACCCTA 62.090 55.000 26.64 14.51 39.59 3.53
25 26 2.506438 GCAGTCGACGCACCCTAC 60.506 66.667 21.73 0.77 0.00 3.18
26 27 2.181021 CAGTCGACGCACCCTACC 59.819 66.667 10.46 0.00 0.00 3.18
27 28 3.437795 AGTCGACGCACCCTACCG 61.438 66.667 10.46 0.00 0.00 4.02
28 29 3.741476 GTCGACGCACCCTACCGT 61.741 66.667 0.00 0.00 40.85 4.83
29 30 2.046411 TCGACGCACCCTACCGTA 60.046 61.111 0.00 0.00 37.87 4.02
30 31 2.108514 TCGACGCACCCTACCGTAG 61.109 63.158 0.00 0.00 37.87 3.51
31 32 2.108514 CGACGCACCCTACCGTAGA 61.109 63.158 7.16 0.00 37.87 2.59
32 33 1.647545 CGACGCACCCTACCGTAGAA 61.648 60.000 7.16 0.00 37.87 2.10
33 34 0.743097 GACGCACCCTACCGTAGAAT 59.257 55.000 7.16 0.00 37.87 2.40
34 35 0.743097 ACGCACCCTACCGTAGAATC 59.257 55.000 7.16 0.00 35.69 2.52
35 36 0.031721 CGCACCCTACCGTAGAATCC 59.968 60.000 7.16 0.00 0.00 3.01
36 37 1.117150 GCACCCTACCGTAGAATCCA 58.883 55.000 7.16 0.00 0.00 3.41
37 38 1.483415 GCACCCTACCGTAGAATCCAA 59.517 52.381 7.16 0.00 0.00 3.53
38 39 2.740904 GCACCCTACCGTAGAATCCAAC 60.741 54.545 7.16 0.00 0.00 3.77
39 40 2.498481 CACCCTACCGTAGAATCCAACA 59.502 50.000 7.16 0.00 0.00 3.33
40 41 3.134081 CACCCTACCGTAGAATCCAACAT 59.866 47.826 7.16 0.00 0.00 2.71
44 45 5.163385 CCCTACCGTAGAATCCAACATACAA 60.163 44.000 7.16 0.00 0.00 2.41
48 49 4.932799 CCGTAGAATCCAACATACAACACA 59.067 41.667 0.00 0.00 0.00 3.72
53 54 3.341857 TCCAACATACAACACAAACGC 57.658 42.857 0.00 0.00 0.00 4.84
57 58 0.237235 CATACAACACAAACGCGGCT 59.763 50.000 12.47 0.00 0.00 5.52
78 79 4.285790 AGGGAGTGGGGGAAGGCA 62.286 66.667 0.00 0.00 0.00 4.75
89 90 1.000396 GGAAGGCAGGCATCCTTGT 60.000 57.895 10.94 0.00 43.54 3.16
100 101 1.004745 GCATCCTTGTCCTTTCCTCCA 59.995 52.381 0.00 0.00 0.00 3.86
110 111 2.411765 CTTTCCTCCACCGTGGCCTT 62.412 60.000 13.19 0.00 37.47 4.35
112 113 3.953775 CCTCCACCGTGGCCTTGT 61.954 66.667 13.19 0.00 37.47 3.16
117 118 1.736645 CACCGTGGCCTTGTCGTAG 60.737 63.158 3.32 0.00 0.00 3.51
121 122 0.172578 CGTGGCCTTGTCGTAGATCA 59.827 55.000 3.32 0.00 40.67 2.92
122 123 1.799181 CGTGGCCTTGTCGTAGATCAG 60.799 57.143 3.32 0.00 40.67 2.90
131 132 1.035385 TCGTAGATCAGCCTCGCCAA 61.035 55.000 0.00 0.00 0.00 4.52
149 150 3.055602 GCCAAAATCCTCTGCTCCAAATT 60.056 43.478 0.00 0.00 0.00 1.82
150 151 4.752146 CCAAAATCCTCTGCTCCAAATTC 58.248 43.478 0.00 0.00 0.00 2.17
159 160 0.681243 GCTCCAAATTCGCCCTCCTT 60.681 55.000 0.00 0.00 0.00 3.36
166 167 2.286365 ATTCGCCCTCCTTTGACAAA 57.714 45.000 0.00 0.00 0.00 2.83
177 178 5.065731 CCTCCTTTGACAAATCTCTGCATAC 59.934 44.000 0.05 0.00 0.00 2.39
182 183 6.732531 TTGACAAATCTCTGCATACTTCAG 57.267 37.500 0.00 0.00 0.00 3.02
185 186 1.863267 ATCTCTGCATACTTCAGCGC 58.137 50.000 0.00 0.00 0.00 5.92
187 188 0.460811 CTCTGCATACTTCAGCGCCA 60.461 55.000 2.29 0.00 0.00 5.69
196 197 3.699955 TTCAGCGCCACGGATCTCG 62.700 63.158 2.29 0.00 45.88 4.04
243 244 1.524621 CTGATCCGCCGCTTTCCAT 60.525 57.895 0.00 0.00 0.00 3.41
247 248 2.270874 ATCCGCCGCTTTCCATTCCT 62.271 55.000 0.00 0.00 0.00 3.36
249 250 2.764314 CGCCGCTTTCCATTCCTGG 61.764 63.158 0.00 0.00 44.64 4.45
264 265 4.077184 TGGACACGCCGGATCCAC 62.077 66.667 13.41 1.69 37.60 4.02
333 337 1.573108 CAGTCACCATGAGTACCCCT 58.427 55.000 0.00 0.00 0.00 4.79
337 341 0.744414 CACCATGAGTACCCCTTGCG 60.744 60.000 0.00 0.00 0.00 4.85
345 349 1.844289 TACCCCTTGCGGAACTGGT 60.844 57.895 9.78 9.78 0.00 4.00
370 374 3.120468 TCAATCTCACCATCTCCAGGA 57.880 47.619 0.00 0.00 0.00 3.86
374 378 1.079490 TCTCACCATCTCCAGGAAGGT 59.921 52.381 2.63 2.63 45.67 3.50
378 382 2.040278 CACCATCTCCAGGAAGGTTTCA 59.960 50.000 5.35 0.00 42.63 2.69
388 392 3.629398 CAGGAAGGTTTCATAGATGTGGC 59.371 47.826 0.00 0.00 0.00 5.01
396 400 0.538057 CATAGATGTGGCGGGGCAAT 60.538 55.000 0.00 0.00 0.00 3.56
397 401 0.250901 ATAGATGTGGCGGGGCAATC 60.251 55.000 0.00 3.38 0.00 2.67
398 402 2.658679 TAGATGTGGCGGGGCAATCG 62.659 60.000 0.00 0.00 0.00 3.34
400 404 4.776322 TGTGGCGGGGCAATCGAG 62.776 66.667 0.00 0.00 0.00 4.04
486 493 3.296709 GAGGTTGGAGCGGCGAGAA 62.297 63.158 12.98 0.00 0.00 2.87
488 495 2.048127 GTTGGAGCGGCGAGAACT 60.048 61.111 12.98 0.00 0.00 3.01
496 503 4.373116 GGCGAGAACTGCGGTGGA 62.373 66.667 0.00 0.00 0.00 4.02
497 504 2.125512 GCGAGAACTGCGGTGGAT 60.126 61.111 0.00 0.00 0.00 3.41
502 509 0.110486 AGAACTGCGGTGGATTTGGT 59.890 50.000 0.00 0.00 0.00 3.67
505 512 2.507407 ACTGCGGTGGATTTGGTAAT 57.493 45.000 0.00 0.00 0.00 1.89
542 549 4.357947 GTCACCGTGGCTGCGAGA 62.358 66.667 0.00 0.00 0.00 4.04
555 562 2.904866 CGAGAGGGGGAGCGAGAG 60.905 72.222 0.00 0.00 0.00 3.20
570 577 3.516981 CGAGAGCTTGAGAAATGGAGA 57.483 47.619 0.00 0.00 0.00 3.71
571 578 4.057406 CGAGAGCTTGAGAAATGGAGAT 57.943 45.455 0.00 0.00 0.00 2.75
572 579 4.050553 CGAGAGCTTGAGAAATGGAGATC 58.949 47.826 0.00 0.00 0.00 2.75
573 580 4.379652 GAGAGCTTGAGAAATGGAGATCC 58.620 47.826 0.00 0.00 0.00 3.36
574 581 4.039339 AGAGCTTGAGAAATGGAGATCCT 58.961 43.478 0.00 0.00 36.82 3.24
575 582 4.474287 AGAGCTTGAGAAATGGAGATCCTT 59.526 41.667 0.00 0.00 36.82 3.36
576 583 5.044993 AGAGCTTGAGAAATGGAGATCCTTT 60.045 40.000 0.00 0.00 36.82 3.11
577 584 4.948621 AGCTTGAGAAATGGAGATCCTTTG 59.051 41.667 0.00 0.00 34.14 2.77
578 585 4.097589 GCTTGAGAAATGGAGATCCTTTGG 59.902 45.833 0.00 0.00 34.14 3.28
579 586 4.240881 TGAGAAATGGAGATCCTTTGGG 57.759 45.455 0.00 0.00 34.14 4.12
580 587 3.851976 TGAGAAATGGAGATCCTTTGGGA 59.148 43.478 0.00 0.00 46.81 4.37
618 625 9.480053 CTTCTTTTGCCAATTCTTAATTTCTGA 57.520 29.630 0.00 0.00 0.00 3.27
619 626 9.480053 TTCTTTTGCCAATTCTTAATTTCTGAG 57.520 29.630 0.00 0.00 0.00 3.35
665 672 6.428159 ACTTTGAAGATTGCGTGAGAATAAGT 59.572 34.615 0.00 0.00 0.00 2.24
682 689 8.989653 AGAATAAGTAACACTTGAAGTCTAGC 57.010 34.615 0.00 0.00 39.11 3.42
684 691 8.764524 AATAAGTAACACTTGAAGTCTAGCTG 57.235 34.615 0.00 0.00 39.11 4.24
685 692 6.406692 AAGTAACACTTGAAGTCTAGCTGA 57.593 37.500 0.00 0.00 37.00 4.26
686 693 6.406692 AGTAACACTTGAAGTCTAGCTGAA 57.593 37.500 0.00 0.00 0.00 3.02
688 695 7.093992 AGTAACACTTGAAGTCTAGCTGAATC 58.906 38.462 0.00 0.00 0.00 2.52
690 697 6.842437 ACACTTGAAGTCTAGCTGAATCTA 57.158 37.500 0.00 0.00 0.00 1.98
691 698 7.416964 ACACTTGAAGTCTAGCTGAATCTAT 57.583 36.000 0.00 0.00 0.00 1.98
695 727 8.846211 ACTTGAAGTCTAGCTGAATCTATCTAC 58.154 37.037 0.00 0.00 0.00 2.59
701 733 7.661437 AGTCTAGCTGAATCTATCTACTGTCAG 59.339 40.741 0.00 0.00 36.43 3.51
727 759 0.390340 TGTGCATCGAGAAGGCTGAC 60.390 55.000 0.00 0.00 0.00 3.51
741 773 1.519455 CTGACGCGGGAAGGACATC 60.519 63.158 12.47 0.00 0.00 3.06
763 795 4.388499 GGCACCGACCCATGACGT 62.388 66.667 0.00 0.00 0.00 4.34
764 796 2.813908 GCACCGACCCATGACGTC 60.814 66.667 9.11 9.11 0.00 4.34
766 798 1.736645 CACCGACCCATGACGTCAC 60.737 63.158 22.71 6.73 0.00 3.67
767 799 2.204461 ACCGACCCATGACGTCACA 61.204 57.895 22.71 0.00 0.00 3.58
768 800 1.446099 CCGACCCATGACGTCACAG 60.446 63.158 22.71 16.29 0.00 3.66
769 801 1.289066 CGACCCATGACGTCACAGT 59.711 57.895 22.71 17.98 0.00 3.55
771 803 1.872237 CGACCCATGACGTCACAGTTT 60.872 52.381 22.71 0.56 0.00 2.66
772 804 1.798813 GACCCATGACGTCACAGTTTC 59.201 52.381 22.71 10.11 0.00 2.78
773 805 0.790207 CCCATGACGTCACAGTTTCG 59.210 55.000 22.71 3.84 0.00 3.46
774 806 0.163788 CCATGACGTCACAGTTTCGC 59.836 55.000 22.71 0.00 0.00 4.70
775 807 0.163788 CATGACGTCACAGTTTCGCC 59.836 55.000 22.71 0.00 0.00 5.54
776 808 0.949105 ATGACGTCACAGTTTCGCCC 60.949 55.000 22.71 0.00 0.00 6.13
778 810 3.047877 CGTCACAGTTTCGCCCCC 61.048 66.667 0.00 0.00 0.00 5.40
815 3044 4.759516 ACAACGTCGCAAATAAAAGGAT 57.240 36.364 0.00 0.00 0.00 3.24
816 3045 5.116069 ACAACGTCGCAAATAAAAGGATT 57.884 34.783 0.00 0.00 0.00 3.01
817 3046 6.243811 ACAACGTCGCAAATAAAAGGATTA 57.756 33.333 0.00 0.00 0.00 1.75
818 3047 6.081693 ACAACGTCGCAAATAAAAGGATTAC 58.918 36.000 0.00 0.00 0.00 1.89
819 3048 5.225899 ACGTCGCAAATAAAAGGATTACC 57.774 39.130 0.00 0.00 0.00 2.85
820 3049 4.696402 ACGTCGCAAATAAAAGGATTACCA 59.304 37.500 0.00 0.00 38.94 3.25
821 3050 5.025826 CGTCGCAAATAAAAGGATTACCAC 58.974 41.667 0.00 0.00 38.94 4.16
822 3051 5.337554 GTCGCAAATAAAAGGATTACCACC 58.662 41.667 0.00 0.00 38.94 4.61
823 3052 4.399934 TCGCAAATAAAAGGATTACCACCC 59.600 41.667 0.00 0.00 38.94 4.61
824 3053 4.678622 GCAAATAAAAGGATTACCACCCG 58.321 43.478 0.00 0.00 38.94 5.28
825 3054 4.399934 GCAAATAAAAGGATTACCACCCGA 59.600 41.667 0.00 0.00 38.94 5.14
826 3055 5.105675 GCAAATAAAAGGATTACCACCCGAA 60.106 40.000 0.00 0.00 38.94 4.30
827 3056 6.572703 GCAAATAAAAGGATTACCACCCGAAA 60.573 38.462 0.00 0.00 38.94 3.46
828 3057 7.379750 CAAATAAAAGGATTACCACCCGAAAA 58.620 34.615 0.00 0.00 38.94 2.29
829 3058 6.769134 ATAAAAGGATTACCACCCGAAAAG 57.231 37.500 0.00 0.00 38.94 2.27
830 3059 4.376225 AAAGGATTACCACCCGAAAAGA 57.624 40.909 0.00 0.00 38.94 2.52
831 3060 3.345508 AGGATTACCACCCGAAAAGAC 57.654 47.619 0.00 0.00 38.94 3.01
832 3061 2.026542 AGGATTACCACCCGAAAAGACC 60.027 50.000 0.00 0.00 38.94 3.85
833 3062 2.290450 GGATTACCACCCGAAAAGACCA 60.290 50.000 0.00 0.00 35.97 4.02
834 3063 3.414269 GATTACCACCCGAAAAGACCAA 58.586 45.455 0.00 0.00 0.00 3.67
835 3064 2.554370 TACCACCCGAAAAGACCAAG 57.446 50.000 0.00 0.00 0.00 3.61
836 3065 0.822121 ACCACCCGAAAAGACCAAGC 60.822 55.000 0.00 0.00 0.00 4.01
1096 3350 1.421410 CCGCAAACTCGATCTTCCGG 61.421 60.000 0.00 0.00 0.00 5.14
1135 3389 3.461773 CTCGCCCATGGTCTCCGT 61.462 66.667 11.73 0.00 0.00 4.69
1136 3390 3.000819 TCGCCCATGGTCTCCGTT 61.001 61.111 11.73 0.00 0.00 4.44
1168 3422 0.811616 CGCCTGCTTCCGCTAATTCT 60.812 55.000 0.00 0.00 36.97 2.40
1173 3427 2.863137 CTGCTTCCGCTAATTCTGTCTC 59.137 50.000 0.00 0.00 36.97 3.36
1174 3428 2.497675 TGCTTCCGCTAATTCTGTCTCT 59.502 45.455 0.00 0.00 36.97 3.10
1181 3435 5.186021 TCCGCTAATTCTGTCTCTTCTTCTT 59.814 40.000 0.00 0.00 0.00 2.52
1214 3468 1.668628 CGGTGCTATTGGTTTTGGTGC 60.669 52.381 0.00 0.00 0.00 5.01
1352 3606 2.741092 GTCGAGGTGGTCAAGGCA 59.259 61.111 0.00 0.00 0.00 4.75
1391 3645 2.596851 GGTGGAGGAGCAGAAGCCA 61.597 63.158 0.00 0.00 43.56 4.75
1539 3793 3.710326 TTCGCGTATAGATCTGTGCTT 57.290 42.857 5.77 0.00 0.00 3.91
1604 3865 5.390885 CCTGTAAATGTGTGAGGATTTGACG 60.391 44.000 0.00 0.00 0.00 4.35
1707 3968 3.645212 TGAGCCAGAATATGAAGAGGAGG 59.355 47.826 0.00 0.00 0.00 4.30
1712 3973 3.071312 CAGAATATGAAGAGGAGGCTGCT 59.929 47.826 8.79 8.79 0.00 4.24
1757 4018 3.906218 TGGAGCAGTATGAGGAGCAATAT 59.094 43.478 0.00 0.00 39.69 1.28
1760 4021 5.512060 GGAGCAGTATGAGGAGCAATATGAA 60.512 44.000 0.00 0.00 39.69 2.57
1860 4121 2.746375 GGTGGGGATGATGGCGAGT 61.746 63.158 0.00 0.00 0.00 4.18
2033 4294 1.798813 GTTTTCAGTGAAGTCGGCGAT 59.201 47.619 14.79 0.00 0.00 4.58
2160 4421 4.148838 TCTGAAAAATCCGATGGTTGGTT 58.851 39.130 0.00 0.00 0.00 3.67
2161 4422 4.586841 TCTGAAAAATCCGATGGTTGGTTT 59.413 37.500 0.00 0.00 0.00 3.27
2162 4423 5.770663 TCTGAAAAATCCGATGGTTGGTTTA 59.229 36.000 0.00 0.00 0.00 2.01
2166 4427 8.030106 TGAAAAATCCGATGGTTGGTTTATTAC 58.970 33.333 0.00 0.00 0.00 1.89
2314 4575 2.299013 TGTTGCTCCTAGTCGTGACAAT 59.701 45.455 2.44 0.00 0.00 2.71
2370 4631 7.980742 CATGGACAAAAGAACATGTATGATG 57.019 36.000 0.00 0.00 36.76 3.07
2373 4634 6.209192 TGGACAAAAGAACATGTATGATGCTT 59.791 34.615 0.00 0.00 0.00 3.91
2528 4789 3.018423 AGCAATAACCCAGGGATGAAC 57.982 47.619 14.54 0.00 0.00 3.18
2630 4891 0.035317 TTGGAGTTGATCGCACTGCT 59.965 50.000 14.81 0.00 0.00 4.24
2654 4915 2.422479 GGTTTCCTTTGCCGATTCCTAC 59.578 50.000 0.00 0.00 0.00 3.18
2702 4963 3.876914 CACAGGTCAGCACTTGTTTTCTA 59.123 43.478 0.00 0.00 39.77 2.10
2703 4964 4.516698 CACAGGTCAGCACTTGTTTTCTAT 59.483 41.667 0.00 0.00 39.77 1.98
2704 4965 5.700832 CACAGGTCAGCACTTGTTTTCTATA 59.299 40.000 0.00 0.00 39.77 1.31
2705 4966 5.934625 ACAGGTCAGCACTTGTTTTCTATAG 59.065 40.000 0.00 0.00 39.77 1.31
2706 4967 5.934625 CAGGTCAGCACTTGTTTTCTATAGT 59.065 40.000 0.00 0.00 0.00 2.12
2707 4968 7.097192 CAGGTCAGCACTTGTTTTCTATAGTA 58.903 38.462 0.00 0.00 0.00 1.82
2708 4969 7.063544 CAGGTCAGCACTTGTTTTCTATAGTAC 59.936 40.741 0.00 0.00 0.00 2.73
2709 4970 7.038941 AGGTCAGCACTTGTTTTCTATAGTACT 60.039 37.037 0.00 0.00 0.00 2.73
2710 4971 7.275999 GGTCAGCACTTGTTTTCTATAGTACTC 59.724 40.741 0.00 0.00 0.00 2.59
2711 4972 7.275999 GTCAGCACTTGTTTTCTATAGTACTCC 59.724 40.741 0.00 0.00 0.00 3.85
2712 4973 6.535508 CAGCACTTGTTTTCTATAGTACTCCC 59.464 42.308 0.00 0.00 0.00 4.30
2713 4974 6.440965 AGCACTTGTTTTCTATAGTACTCCCT 59.559 38.462 0.00 0.00 0.00 4.20
2714 4975 6.757478 GCACTTGTTTTCTATAGTACTCCCTC 59.243 42.308 0.00 0.00 0.00 4.30
2715 4976 7.266400 CACTTGTTTTCTATAGTACTCCCTCC 58.734 42.308 0.00 0.00 0.00 4.30
2716 4977 6.096564 ACTTGTTTTCTATAGTACTCCCTCCG 59.903 42.308 0.00 0.00 0.00 4.63
2717 4978 5.513233 TGTTTTCTATAGTACTCCCTCCGT 58.487 41.667 0.00 0.00 0.00 4.69
2718 4979 5.591877 TGTTTTCTATAGTACTCCCTCCGTC 59.408 44.000 0.00 0.00 0.00 4.79
2719 4980 4.363991 TTCTATAGTACTCCCTCCGTCC 57.636 50.000 0.00 0.00 0.00 4.79
2720 4981 2.641815 TCTATAGTACTCCCTCCGTCCC 59.358 54.545 0.00 0.00 0.00 4.46
2721 4982 1.229131 ATAGTACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37
2722 4983 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
2723 4984 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
2724 4985 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
2725 4986 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
2726 4987 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2727 4988 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2728 4989 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2729 4990 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2730 4991 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2731 4992 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
2732 4993 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
2733 4994 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
2734 4995 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
2735 4996 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
2736 4997 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2737 4998 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2738 4999 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2739 5000 5.929992 CGTCCCAAAATAAGTGTCTCAACTA 59.070 40.000 0.00 0.00 0.00 2.24
2740 5001 6.594159 CGTCCCAAAATAAGTGTCTCAACTAT 59.406 38.462 0.00 0.00 0.00 2.12
2741 5002 7.762615 CGTCCCAAAATAAGTGTCTCAACTATA 59.237 37.037 0.00 0.00 0.00 1.31
2742 5003 9.099454 GTCCCAAAATAAGTGTCTCAACTATAG 57.901 37.037 0.00 0.00 0.00 1.31
2743 5004 8.822805 TCCCAAAATAAGTGTCTCAACTATAGT 58.177 33.333 0.00 0.00 0.00 2.12
2749 5010 8.694581 ATAAGTGTCTCAACTATAGTACTCCC 57.305 38.462 5.65 0.00 0.00 4.30
2750 5011 6.330178 AGTGTCTCAACTATAGTACTCCCT 57.670 41.667 5.65 0.00 0.00 4.20
2751 5012 6.358991 AGTGTCTCAACTATAGTACTCCCTC 58.641 44.000 5.65 0.00 0.00 4.30
2752 5013 5.532032 GTGTCTCAACTATAGTACTCCCTCC 59.468 48.000 5.65 0.00 0.00 4.30
2753 5014 4.756135 GTCTCAACTATAGTACTCCCTCCG 59.244 50.000 5.65 0.00 0.00 4.63
2754 5015 4.411540 TCTCAACTATAGTACTCCCTCCGT 59.588 45.833 5.65 0.00 0.00 4.69
2755 5016 5.104193 TCTCAACTATAGTACTCCCTCCGTT 60.104 44.000 5.65 0.00 0.00 4.44
2756 5017 5.128919 TCAACTATAGTACTCCCTCCGTTC 58.871 45.833 5.65 0.00 0.00 3.95
2757 5018 4.097551 ACTATAGTACTCCCTCCGTTCC 57.902 50.000 2.75 0.00 0.00 3.62
2758 5019 1.978454 ATAGTACTCCCTCCGTTCCG 58.022 55.000 0.00 0.00 0.00 4.30
2759 5020 0.911769 TAGTACTCCCTCCGTTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
2760 5021 0.258194 AGTACTCCCTCCGTTCCGAT 59.742 55.000 0.00 0.00 0.00 4.18
2761 5022 1.109609 GTACTCCCTCCGTTCCGATT 58.890 55.000 0.00 0.00 0.00 3.34
2762 5023 1.479730 GTACTCCCTCCGTTCCGATTT 59.520 52.381 0.00 0.00 0.00 2.17
2763 5024 1.856629 ACTCCCTCCGTTCCGATTTA 58.143 50.000 0.00 0.00 0.00 1.40
2764 5025 1.479730 ACTCCCTCCGTTCCGATTTAC 59.520 52.381 0.00 0.00 0.00 2.01
2765 5026 1.755380 CTCCCTCCGTTCCGATTTACT 59.245 52.381 0.00 0.00 0.00 2.24
2766 5027 1.753073 TCCCTCCGTTCCGATTTACTC 59.247 52.381 0.00 0.00 0.00 2.59
2768 5029 1.133790 CCTCCGTTCCGATTTACTCGT 59.866 52.381 0.00 0.00 46.18 4.18
2769 5030 2.448219 CTCCGTTCCGATTTACTCGTC 58.552 52.381 0.00 0.00 46.18 4.20
2770 5031 1.186030 CCGTTCCGATTTACTCGTCG 58.814 55.000 0.00 0.00 46.18 5.12
2771 5032 1.466360 CCGTTCCGATTTACTCGTCGT 60.466 52.381 0.00 0.00 46.18 4.34
2772 5033 1.576246 CGTTCCGATTTACTCGTCGTG 59.424 52.381 0.00 0.00 46.18 4.35
2773 5034 1.916000 GTTCCGATTTACTCGTCGTGG 59.084 52.381 0.00 0.00 46.18 4.94
2774 5035 1.167851 TCCGATTTACTCGTCGTGGT 58.832 50.000 0.00 0.00 46.18 4.16
2775 5036 1.541147 TCCGATTTACTCGTCGTGGTT 59.459 47.619 0.00 0.00 46.18 3.67
2776 5037 2.030007 TCCGATTTACTCGTCGTGGTTT 60.030 45.455 0.00 0.00 46.18 3.27
2777 5038 2.733026 CCGATTTACTCGTCGTGGTTTT 59.267 45.455 0.00 0.00 46.18 2.43
2778 5039 3.919804 CCGATTTACTCGTCGTGGTTTTA 59.080 43.478 0.00 0.00 46.18 1.52
2779 5040 4.030977 CCGATTTACTCGTCGTGGTTTTAG 59.969 45.833 0.00 0.00 46.18 1.85
2780 5041 4.618489 CGATTTACTCGTCGTGGTTTTAGT 59.382 41.667 0.00 0.00 42.56 2.24
2781 5042 5.117592 CGATTTACTCGTCGTGGTTTTAGTT 59.882 40.000 0.00 0.00 42.56 2.24
2782 5043 6.346040 CGATTTACTCGTCGTGGTTTTAGTTT 60.346 38.462 0.00 0.00 42.56 2.66
2783 5044 7.148983 CGATTTACTCGTCGTGGTTTTAGTTTA 60.149 37.037 0.00 0.00 42.56 2.01
2784 5045 7.763172 TTTACTCGTCGTGGTTTTAGTTTAA 57.237 32.000 0.00 0.00 0.00 1.52
2785 5046 7.763172 TTACTCGTCGTGGTTTTAGTTTAAA 57.237 32.000 0.00 0.00 0.00 1.52
2786 5047 6.849588 ACTCGTCGTGGTTTTAGTTTAAAT 57.150 33.333 0.00 0.00 0.00 1.40
2787 5048 7.250445 ACTCGTCGTGGTTTTAGTTTAAATT 57.750 32.000 0.00 0.00 0.00 1.82
2788 5049 7.696755 ACTCGTCGTGGTTTTAGTTTAAATTT 58.303 30.769 0.00 0.00 0.00 1.82
2789 5050 7.641020 ACTCGTCGTGGTTTTAGTTTAAATTTG 59.359 33.333 0.00 0.00 0.00 2.32
2790 5051 7.692088 TCGTCGTGGTTTTAGTTTAAATTTGA 58.308 30.769 0.00 0.00 0.00 2.69
2791 5052 8.180267 TCGTCGTGGTTTTAGTTTAAATTTGAA 58.820 29.630 0.00 0.00 0.00 2.69
2792 5053 8.254470 CGTCGTGGTTTTAGTTTAAATTTGAAC 58.746 33.333 15.93 15.93 0.00 3.18
2793 5054 9.292846 GTCGTGGTTTTAGTTTAAATTTGAACT 57.707 29.630 25.84 25.84 39.80 3.01
2804 5065 9.292846 AGTTTAAATTTGAACTAAAACCACGAC 57.707 29.630 22.70 0.00 35.55 4.34
2805 5066 7.895582 TTAAATTTGAACTAAAACCACGACG 57.104 32.000 0.00 0.00 0.00 5.12
2806 5067 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
2807 5068 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
2808 5069 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
2809 5070 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
2810 5071 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
2811 5072 5.347342 TGAACTAAAACCACGACGAGTAAA 58.653 37.500 0.00 0.00 0.00 2.01
2812 5073 5.984926 TGAACTAAAACCACGACGAGTAAAT 59.015 36.000 0.00 0.00 0.00 1.40
2813 5074 6.144402 TGAACTAAAACCACGACGAGTAAATC 59.856 38.462 0.00 0.00 0.00 2.17
2832 5093 3.828657 GGAACGGAGGGAGTACAAC 57.171 57.895 0.00 0.00 0.00 3.32
2833 5094 1.264295 GGAACGGAGGGAGTACAACT 58.736 55.000 0.00 0.00 0.00 3.16
2834 5095 1.622312 GGAACGGAGGGAGTACAACTT 59.378 52.381 0.00 0.00 0.00 2.66
2835 5096 2.038164 GGAACGGAGGGAGTACAACTTT 59.962 50.000 0.00 0.00 0.00 2.66
2836 5097 2.833631 ACGGAGGGAGTACAACTTTG 57.166 50.000 0.00 0.00 0.00 2.77
2837 5098 2.044758 ACGGAGGGAGTACAACTTTGT 58.955 47.619 0.00 0.00 44.86 2.83
2838 5099 3.233507 ACGGAGGGAGTACAACTTTGTA 58.766 45.455 0.00 0.00 42.35 2.41
2877 5138 8.488651 AAAGTTAAGACACTTATTATGGGACG 57.511 34.615 0.00 0.00 35.87 4.79
2878 5139 6.579865 AGTTAAGACACTTATTATGGGACGG 58.420 40.000 0.00 0.00 0.00 4.79
2879 5140 6.381994 AGTTAAGACACTTATTATGGGACGGA 59.618 38.462 0.00 0.00 0.00 4.69
2880 5141 4.939052 AGACACTTATTATGGGACGGAG 57.061 45.455 0.00 0.00 0.00 4.63
2881 5142 3.641906 AGACACTTATTATGGGACGGAGG 59.358 47.826 0.00 0.00 0.00 4.30
2882 5143 2.704065 ACACTTATTATGGGACGGAGGG 59.296 50.000 0.00 0.00 0.00 4.30
2902 5163 6.464039 GGAGGGAGTAGTTTTAAGTGTCACTT 60.464 42.308 21.48 21.48 41.97 3.16
2925 5186 1.710816 TTTGTGCCCCCTTAAAGTGG 58.289 50.000 0.00 0.00 0.00 4.00
2926 5187 0.830023 TTGTGCCCCCTTAAAGTGGC 60.830 55.000 0.00 0.00 44.27 5.01
2928 5189 4.785575 GCCCCCTTAAAGTGGCAT 57.214 55.556 0.00 0.00 43.46 4.40
2929 5190 2.201927 GCCCCCTTAAAGTGGCATG 58.798 57.895 0.00 0.00 43.46 4.06
2930 5191 0.614697 GCCCCCTTAAAGTGGCATGT 60.615 55.000 0.00 0.00 43.46 3.21
2936 5200 5.258051 CCCCTTAAAGTGGCATGTTAGTAA 58.742 41.667 0.00 0.00 0.00 2.24
2962 5226 6.392354 AGTATTTTGATGCTGTTTGGTCATG 58.608 36.000 0.00 0.00 0.00 3.07
2994 5258 5.574443 GCAGCTGCTAGTTTTTATTTTCTGG 59.426 40.000 31.33 0.00 38.21 3.86
2998 5262 6.923508 GCTGCTAGTTTTTATTTTCTGGTGTT 59.076 34.615 0.00 0.00 0.00 3.32
3178 5445 1.815817 AACTTGCCCGAAACATGCCC 61.816 55.000 0.00 0.00 0.00 5.36
3280 5547 1.294659 CTGAGCTTGGCGAAGGTGAC 61.295 60.000 18.23 5.22 40.07 3.67
3344 5611 4.472833 AGCTGATTTTCCCATCTACTCAGT 59.527 41.667 0.00 0.00 33.04 3.41
3354 5621 5.133830 TCCCATCTACTCAGTCCACTGTATA 59.866 44.000 6.61 0.72 44.12 1.47
3494 5761 3.708121 GAGGAAATTTCAGGATTGGGCAT 59.292 43.478 19.49 0.00 0.00 4.40
3509 5776 1.300542 GCATAGTGCTCCTCGAGGC 60.301 63.158 27.39 16.42 40.96 4.70
3587 5854 2.588620 CCTGATACTCGCTTACCTCCT 58.411 52.381 0.00 0.00 0.00 3.69
3745 6012 6.834451 TGGTACCCATTCTTTTTGTAGAACAA 59.166 34.615 10.07 0.00 37.00 2.83
3776 6046 3.947196 AGCCGCATCAAATTTCTCATACA 59.053 39.130 0.00 0.00 0.00 2.29
3777 6047 4.398988 AGCCGCATCAAATTTCTCATACAA 59.601 37.500 0.00 0.00 0.00 2.41
3778 6048 5.101628 GCCGCATCAAATTTCTCATACAAA 58.898 37.500 0.00 0.00 0.00 2.83
3780 6050 6.454186 GCCGCATCAAATTTCTCATACAAAAC 60.454 38.462 0.00 0.00 0.00 2.43
3813 6083 3.751518 TCCTGTTTACCCAAAGAGAAGC 58.248 45.455 0.00 0.00 37.24 3.86
3848 6118 0.744771 GGAAGGCGTGATGAACCTCC 60.745 60.000 0.00 0.00 31.86 4.30
3878 6148 1.799383 GCAGAGCTACCTTTGCTGC 59.201 57.895 5.66 5.66 43.69 5.25
3879 6149 0.676151 GCAGAGCTACCTTTGCTGCT 60.676 55.000 12.64 0.00 46.17 4.24
3880 6150 1.085091 CAGAGCTACCTTTGCTGCTG 58.915 55.000 0.00 0.00 41.30 4.41
3881 6151 0.979665 AGAGCTACCTTTGCTGCTGA 59.020 50.000 0.00 0.00 41.30 4.26
3882 6152 1.558756 AGAGCTACCTTTGCTGCTGAT 59.441 47.619 0.00 0.00 41.30 2.90
3903 6173 2.717639 ACAGTGCAAGAGTTCCAGTT 57.282 45.000 0.00 0.00 0.00 3.16
3948 6218 0.828022 ACTATTCGCCCCGTGAATCA 59.172 50.000 3.82 0.00 41.12 2.57
4176 6446 3.005155 GCACTTGCAGTTTCTTCCTCAAT 59.995 43.478 0.00 0.00 41.59 2.57
4177 6447 4.791974 CACTTGCAGTTTCTTCCTCAATC 58.208 43.478 0.00 0.00 0.00 2.67
4354 6625 1.484038 TGCAGTCCTTTTGCTTGGTT 58.516 45.000 0.00 0.00 42.02 3.67
4422 6693 6.573664 TGTTCTTACAAATGTCCATCCTTG 57.426 37.500 0.00 0.00 0.00 3.61
4469 6740 2.957491 ACACTAGCAGCAGATCTGTC 57.043 50.000 23.38 15.41 44.66 3.51
4526 6797 4.422073 TGGCTTGAGTTATGGAGGTATG 57.578 45.455 0.00 0.00 0.00 2.39
4545 6816 9.090416 GAGGTATGTACTCTTGAAGCCTATGCT 62.090 44.444 0.00 0.00 39.70 3.79
4587 6858 6.319658 TGATACCTTTCTTGATCCAATGCTTC 59.680 38.462 0.00 0.00 0.00 3.86
4649 6920 1.271597 ACTGGAGATGCTGGTGGAAAC 60.272 52.381 0.00 0.00 0.00 2.78
4768 7042 6.443849 TCTCCAAGTCAAATATAGGTCCAGTT 59.556 38.462 0.00 0.00 0.00 3.16
4783 7057 5.711976 AGGTCCAGTTCCAGTGAAATATTTG 59.288 40.000 5.17 0.00 30.79 2.32
4793 7067 8.579850 TCCAGTGAAATATTTGTAAGCTTGAT 57.420 30.769 9.86 0.64 0.00 2.57
4824 7098 5.241506 TGAAGGAAAAACTACCAGCATCAAG 59.758 40.000 0.00 0.00 0.00 3.02
4827 7101 5.241728 AGGAAAAACTACCAGCATCAAGAAC 59.758 40.000 0.00 0.00 0.00 3.01
4828 7102 5.009610 GGAAAAACTACCAGCATCAAGAACA 59.990 40.000 0.00 0.00 0.00 3.18
4829 7103 6.294731 GGAAAAACTACCAGCATCAAGAACAT 60.295 38.462 0.00 0.00 0.00 2.71
4918 7192 5.683681 AGCAACCTTGTTTCATGGAAATTT 58.316 33.333 8.33 0.00 33.97 1.82
4920 7194 7.452562 AGCAACCTTGTTTCATGGAAATTTAT 58.547 30.769 8.33 0.00 33.97 1.40
4951 7225 4.282496 TGTTATTGTTTGGTCAGGTTGGT 58.718 39.130 0.00 0.00 0.00 3.67
4954 7228 0.626382 TGTTTGGTCAGGTTGGTGGA 59.374 50.000 0.00 0.00 0.00 4.02
5118 7393 0.948623 TTGTTCACCATCTGTCGCCG 60.949 55.000 0.00 0.00 0.00 6.46
5299 7574 2.092646 TGGTGTAGGCCATGGATTGTAC 60.093 50.000 18.40 10.73 32.81 2.90
5306 7581 1.871080 CCATGGATTGTACGGAGCTC 58.129 55.000 5.56 4.71 0.00 4.09
5571 7846 5.701290 AGTAATCTTTGAGGTCGTTTCCTTG 59.299 40.000 0.00 0.00 38.02 3.61
5597 7872 2.375146 ACACAAGGTGTTTTGGAGACC 58.625 47.619 0.00 0.00 45.08 3.85
5633 7908 3.443037 CCAGCAGAAGATCAGACTTACG 58.557 50.000 0.00 0.00 0.00 3.18
5840 8115 3.319122 CAGGTTCTGGGAGAAACCTTTTG 59.681 47.826 4.09 0.00 42.81 2.44
5907 8182 8.893563 TCCCCACAATTTTAAGATAACAGAAT 57.106 30.769 0.00 0.00 0.00 2.40
5978 8254 6.524734 CATAGAGTACATGGCACCAGATAAA 58.475 40.000 0.00 0.00 0.00 1.40
6005 8281 4.074259 ACAAGCATTATCAACACTGAGCA 58.926 39.130 0.00 0.00 34.23 4.26
6079 8355 7.472334 ACATCTTTGAGCCAAATATCTGTTT 57.528 32.000 1.56 0.00 32.70 2.83
6239 8515 6.716934 ATATATGATACACTTAGGCCCTCG 57.283 41.667 0.00 0.00 0.00 4.63
6244 8520 2.100631 CACTTAGGCCCTCGTTGCG 61.101 63.158 0.00 0.00 0.00 4.85
6543 9018 3.813166 GCTACATAAAGCGGCAATAAGGA 59.187 43.478 1.45 0.00 31.76 3.36
6544 9019 4.455877 GCTACATAAAGCGGCAATAAGGAT 59.544 41.667 1.45 0.00 31.76 3.24
6545 9020 5.642063 GCTACATAAAGCGGCAATAAGGATA 59.358 40.000 1.45 0.00 31.76 2.59
6546 9021 6.148811 GCTACATAAAGCGGCAATAAGGATAA 59.851 38.462 1.45 0.00 31.76 1.75
6547 9022 6.313744 ACATAAAGCGGCAATAAGGATAAC 57.686 37.500 1.45 0.00 0.00 1.89
6548 9023 6.062095 ACATAAAGCGGCAATAAGGATAACT 58.938 36.000 1.45 0.00 0.00 2.24
6549 9024 7.221450 ACATAAAGCGGCAATAAGGATAACTA 58.779 34.615 1.45 0.00 0.00 2.24
6550 9025 7.883311 ACATAAAGCGGCAATAAGGATAACTAT 59.117 33.333 1.45 0.00 0.00 2.12
6551 9026 6.560253 AAAGCGGCAATAAGGATAACTATG 57.440 37.500 1.45 0.00 0.00 2.23
6552 9027 5.483685 AGCGGCAATAAGGATAACTATGA 57.516 39.130 1.45 0.00 0.00 2.15
6553 9028 6.054860 AGCGGCAATAAGGATAACTATGAT 57.945 37.500 1.45 0.00 0.00 2.45
6554 9029 6.476378 AGCGGCAATAAGGATAACTATGATT 58.524 36.000 1.45 0.00 0.00 2.57
6555 9030 7.620880 AGCGGCAATAAGGATAACTATGATTA 58.379 34.615 1.45 0.00 0.00 1.75
6556 9031 7.766278 AGCGGCAATAAGGATAACTATGATTAG 59.234 37.037 1.45 0.00 0.00 1.73
6557 9032 7.764443 GCGGCAATAAGGATAACTATGATTAGA 59.236 37.037 0.00 0.00 0.00 2.10
6558 9033 9.823647 CGGCAATAAGGATAACTATGATTAGAT 57.176 33.333 0.00 0.00 0.00 1.98
6581 9056 7.893124 ATCTGGAGATCAAAGTTATGCATTT 57.107 32.000 3.54 0.00 0.00 2.32
6582 9057 7.707624 TCTGGAGATCAAAGTTATGCATTTT 57.292 32.000 3.54 0.00 0.00 1.82
6583 9058 8.125978 TCTGGAGATCAAAGTTATGCATTTTT 57.874 30.769 3.54 0.94 0.00 1.94
6584 9059 8.030692 TCTGGAGATCAAAGTTATGCATTTTTG 58.969 33.333 3.54 13.58 33.09 2.44
6585 9060 7.098477 TGGAGATCAAAGTTATGCATTTTTGG 58.902 34.615 21.04 7.83 32.76 3.28
6586 9061 7.099120 GGAGATCAAAGTTATGCATTTTTGGT 58.901 34.615 21.04 17.51 32.76 3.67
6587 9062 7.603784 GGAGATCAAAGTTATGCATTTTTGGTT 59.396 33.333 21.04 13.84 32.76 3.67
6588 9063 8.314143 AGATCAAAGTTATGCATTTTTGGTTG 57.686 30.769 21.04 12.75 32.76 3.77
6589 9064 6.857777 TCAAAGTTATGCATTTTTGGTTGG 57.142 33.333 21.04 5.63 32.76 3.77
6590 9065 5.238214 TCAAAGTTATGCATTTTTGGTTGGC 59.762 36.000 21.04 0.00 32.76 4.52
6591 9066 4.622260 AGTTATGCATTTTTGGTTGGCT 57.378 36.364 3.54 0.00 0.00 4.75
6592 9067 5.736951 AGTTATGCATTTTTGGTTGGCTA 57.263 34.783 3.54 0.00 0.00 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.350007 GGTGCGTCGACTGCAAATTAAA 60.350 45.455 27.78 8.74 45.23 1.52
1 2 1.195900 GGTGCGTCGACTGCAAATTAA 59.804 47.619 27.78 9.32 45.23 1.40
2 3 0.793861 GGTGCGTCGACTGCAAATTA 59.206 50.000 27.78 9.90 45.23 1.40
3 4 1.574428 GGTGCGTCGACTGCAAATT 59.426 52.632 27.78 0.00 45.23 1.82
4 5 2.325082 GGGTGCGTCGACTGCAAAT 61.325 57.895 27.78 0.00 45.23 2.32
5 6 2.089887 TAGGGTGCGTCGACTGCAAA 62.090 55.000 27.78 15.62 45.23 3.68
6 7 2.566570 TAGGGTGCGTCGACTGCAA 61.567 57.895 27.78 15.19 45.23 4.08
7 8 2.986979 TAGGGTGCGTCGACTGCA 60.987 61.111 24.25 24.25 40.70 4.41
8 9 2.506438 GTAGGGTGCGTCGACTGC 60.506 66.667 20.46 20.46 0.00 4.40
9 10 2.181021 GGTAGGGTGCGTCGACTG 59.819 66.667 14.70 8.46 0.00 3.51
10 11 2.803155 TACGGTAGGGTGCGTCGACT 62.803 60.000 14.70 0.00 0.00 4.18
11 12 2.315038 CTACGGTAGGGTGCGTCGAC 62.315 65.000 5.18 5.18 0.00 4.20
12 13 2.046411 TACGGTAGGGTGCGTCGA 60.046 61.111 0.00 0.00 0.00 4.20
13 14 1.647545 TTCTACGGTAGGGTGCGTCG 61.648 60.000 14.82 0.00 0.00 5.12
14 15 0.743097 ATTCTACGGTAGGGTGCGTC 59.257 55.000 14.82 0.00 0.00 5.19
15 16 0.743097 GATTCTACGGTAGGGTGCGT 59.257 55.000 14.82 0.00 0.00 5.24
16 17 0.031721 GGATTCTACGGTAGGGTGCG 59.968 60.000 14.82 0.00 0.00 5.34
17 18 1.117150 TGGATTCTACGGTAGGGTGC 58.883 55.000 14.82 9.59 0.00 5.01
18 19 2.498481 TGTTGGATTCTACGGTAGGGTG 59.502 50.000 14.82 0.00 0.00 4.61
19 20 2.823959 TGTTGGATTCTACGGTAGGGT 58.176 47.619 14.82 4.36 0.00 4.34
20 21 4.342951 TGTATGTTGGATTCTACGGTAGGG 59.657 45.833 14.82 0.00 0.00 3.53
21 22 5.524971 TGTATGTTGGATTCTACGGTAGG 57.475 43.478 14.82 0.00 0.00 3.18
22 23 6.255020 GTGTTGTATGTTGGATTCTACGGTAG 59.745 42.308 8.91 8.91 0.00 3.18
23 24 6.101332 GTGTTGTATGTTGGATTCTACGGTA 58.899 40.000 0.00 0.00 0.00 4.02
24 25 4.933400 GTGTTGTATGTTGGATTCTACGGT 59.067 41.667 0.00 0.00 0.00 4.83
25 26 4.932799 TGTGTTGTATGTTGGATTCTACGG 59.067 41.667 0.00 0.00 0.00 4.02
26 27 6.474819 TTGTGTTGTATGTTGGATTCTACG 57.525 37.500 0.00 0.00 0.00 3.51
27 28 6.795114 CGTTTGTGTTGTATGTTGGATTCTAC 59.205 38.462 0.00 0.00 0.00 2.59
28 29 6.566942 GCGTTTGTGTTGTATGTTGGATTCTA 60.567 38.462 0.00 0.00 0.00 2.10
29 30 5.757886 CGTTTGTGTTGTATGTTGGATTCT 58.242 37.500 0.00 0.00 0.00 2.40
30 31 4.381566 GCGTTTGTGTTGTATGTTGGATTC 59.618 41.667 0.00 0.00 0.00 2.52
31 32 4.295051 GCGTTTGTGTTGTATGTTGGATT 58.705 39.130 0.00 0.00 0.00 3.01
32 33 3.608241 CGCGTTTGTGTTGTATGTTGGAT 60.608 43.478 0.00 0.00 0.00 3.41
33 34 2.286477 CGCGTTTGTGTTGTATGTTGGA 60.286 45.455 0.00 0.00 0.00 3.53
34 35 2.040524 CGCGTTTGTGTTGTATGTTGG 58.959 47.619 0.00 0.00 0.00 3.77
35 36 2.040524 CCGCGTTTGTGTTGTATGTTG 58.959 47.619 4.92 0.00 0.00 3.33
36 37 1.598430 GCCGCGTTTGTGTTGTATGTT 60.598 47.619 4.92 0.00 0.00 2.71
37 38 0.040781 GCCGCGTTTGTGTTGTATGT 60.041 50.000 4.92 0.00 0.00 2.29
38 39 0.237235 AGCCGCGTTTGTGTTGTATG 59.763 50.000 4.92 0.00 0.00 2.39
39 40 0.237235 CAGCCGCGTTTGTGTTGTAT 59.763 50.000 4.92 0.00 0.00 2.29
40 41 1.644372 CAGCCGCGTTTGTGTTGTA 59.356 52.632 4.92 0.00 0.00 2.41
57 58 4.608514 TTCCCCCACTCCCTGCCA 62.609 66.667 0.00 0.00 0.00 4.92
61 62 4.285790 TGCCTTCCCCCACTCCCT 62.286 66.667 0.00 0.00 0.00 4.20
73 74 1.000396 GGACAAGGATGCCTGCCTT 60.000 57.895 0.00 0.00 46.36 4.35
78 79 1.283321 GAGGAAAGGACAAGGATGCCT 59.717 52.381 0.00 0.00 35.45 4.75
89 90 2.890766 GCCACGGTGGAGGAAAGGA 61.891 63.158 30.65 0.00 40.96 3.36
100 101 1.255667 ATCTACGACAAGGCCACGGT 61.256 55.000 5.01 0.00 0.00 4.83
110 111 1.725557 GGCGAGGCTGATCTACGACA 61.726 60.000 0.00 0.00 31.98 4.35
112 113 1.035385 TTGGCGAGGCTGATCTACGA 61.035 55.000 0.00 0.00 0.00 3.43
117 118 0.665298 GGATTTTGGCGAGGCTGATC 59.335 55.000 0.00 0.00 0.00 2.92
121 122 0.393537 CAGAGGATTTTGGCGAGGCT 60.394 55.000 0.00 0.00 0.00 4.58
122 123 1.997928 GCAGAGGATTTTGGCGAGGC 61.998 60.000 0.00 0.00 0.00 4.70
131 132 2.424956 GCGAATTTGGAGCAGAGGATTT 59.575 45.455 0.00 0.00 0.00 2.17
149 150 1.351017 AGATTTGTCAAAGGAGGGCGA 59.649 47.619 4.03 0.00 0.00 5.54
150 151 1.740025 GAGATTTGTCAAAGGAGGGCG 59.260 52.381 4.03 0.00 0.00 6.13
177 178 1.880340 GAGATCCGTGGCGCTGAAG 60.880 63.158 7.64 0.00 0.00 3.02
197 198 4.685026 CGGCGATAGACCCGAGCG 62.685 72.222 0.00 0.00 46.50 5.03
224 225 2.897350 GGAAAGCGGCGGATCAGG 60.897 66.667 9.78 0.00 0.00 3.86
225 226 1.097547 AATGGAAAGCGGCGGATCAG 61.098 55.000 9.78 0.00 0.00 2.90
237 238 0.608035 GGCGTGTCCAGGAATGGAAA 60.608 55.000 0.00 0.00 40.06 3.13
243 244 3.000819 ATCCGGCGTGTCCAGGAA 61.001 61.111 6.01 0.00 39.66 3.36
247 248 4.077184 GTGGATCCGGCGTGTCCA 62.077 66.667 21.75 21.75 39.61 4.02
309 313 1.271840 TACTCATGGTGACTGGGGCC 61.272 60.000 0.00 0.00 0.00 5.80
315 319 1.909302 CAAGGGGTACTCATGGTGACT 59.091 52.381 0.00 0.00 0.00 3.41
333 337 0.684535 TGATCTCACCAGTTCCGCAA 59.315 50.000 0.00 0.00 0.00 4.85
367 371 3.682718 CGCCACATCTATGAAACCTTCCT 60.683 47.826 0.00 0.00 0.00 3.36
370 374 2.643551 CCGCCACATCTATGAAACCTT 58.356 47.619 0.00 0.00 0.00 3.50
374 378 0.465460 GCCCCGCCACATCTATGAAA 60.465 55.000 0.00 0.00 0.00 2.69
378 382 0.250901 GATTGCCCCGCCACATCTAT 60.251 55.000 0.00 0.00 0.00 1.98
454 458 3.842923 CCTCGCATGCCTCCTCGT 61.843 66.667 13.15 0.00 0.00 4.18
460 464 2.270205 CTCCAACCTCGCATGCCT 59.730 61.111 13.15 0.00 0.00 4.75
481 488 0.443869 CAAATCCACCGCAGTTCTCG 59.556 55.000 0.00 0.00 0.00 4.04
486 493 2.091541 CATTACCAAATCCACCGCAGT 58.908 47.619 0.00 0.00 0.00 4.40
488 495 1.468985 CCATTACCAAATCCACCGCA 58.531 50.000 0.00 0.00 0.00 5.69
496 503 1.101049 CCCGCTCGCCATTACCAAAT 61.101 55.000 0.00 0.00 0.00 2.32
497 504 1.747367 CCCGCTCGCCATTACCAAA 60.747 57.895 0.00 0.00 0.00 3.28
502 509 4.235762 GCCTCCCGCTCGCCATTA 62.236 66.667 0.00 0.00 0.00 1.90
552 559 4.039339 AGGATCTCCATTTCTCAAGCTCT 58.961 43.478 0.00 0.00 38.89 4.09
553 560 4.420522 AGGATCTCCATTTCTCAAGCTC 57.579 45.455 0.00 0.00 38.89 4.09
554 561 4.858965 AAGGATCTCCATTTCTCAAGCT 57.141 40.909 0.00 0.00 38.89 3.74
555 562 4.097589 CCAAAGGATCTCCATTTCTCAAGC 59.902 45.833 0.00 0.00 38.89 4.01
556 563 4.643784 CCCAAAGGATCTCCATTTCTCAAG 59.356 45.833 0.00 0.00 38.89 3.02
557 564 4.292041 TCCCAAAGGATCTCCATTTCTCAA 59.708 41.667 0.00 0.00 37.19 3.02
558 565 3.851976 TCCCAAAGGATCTCCATTTCTCA 59.148 43.478 0.00 0.00 37.19 3.27
559 566 4.510167 TCCCAAAGGATCTCCATTTCTC 57.490 45.455 0.00 0.00 37.19 2.87
572 579 1.270550 GTGTTGTCTGCATCCCAAAGG 59.729 52.381 0.00 0.00 0.00 3.11
573 580 2.233271 AGTGTTGTCTGCATCCCAAAG 58.767 47.619 0.00 0.00 0.00 2.77
574 581 2.363306 AGTGTTGTCTGCATCCCAAA 57.637 45.000 0.00 0.00 0.00 3.28
575 582 2.158623 AGAAGTGTTGTCTGCATCCCAA 60.159 45.455 0.00 0.00 0.00 4.12
576 583 1.421268 AGAAGTGTTGTCTGCATCCCA 59.579 47.619 0.00 0.00 0.00 4.37
577 584 2.191128 AGAAGTGTTGTCTGCATCCC 57.809 50.000 0.00 0.00 0.00 3.85
578 585 4.293415 CAAAAGAAGTGTTGTCTGCATCC 58.707 43.478 0.00 0.00 0.00 3.51
579 586 3.732721 GCAAAAGAAGTGTTGTCTGCATC 59.267 43.478 0.00 0.00 0.00 3.91
580 587 3.491447 GGCAAAAGAAGTGTTGTCTGCAT 60.491 43.478 0.00 0.00 0.00 3.96
581 588 2.159254 GGCAAAAGAAGTGTTGTCTGCA 60.159 45.455 0.00 0.00 0.00 4.41
582 589 2.159254 TGGCAAAAGAAGTGTTGTCTGC 60.159 45.455 0.00 0.00 30.58 4.26
583 590 3.781079 TGGCAAAAGAAGTGTTGTCTG 57.219 42.857 0.00 0.00 30.58 3.51
584 591 5.127682 AGAATTGGCAAAAGAAGTGTTGTCT 59.872 36.000 3.01 0.00 30.58 3.41
585 592 5.351458 AGAATTGGCAAAAGAAGTGTTGTC 58.649 37.500 3.01 0.00 0.00 3.18
586 593 5.343307 AGAATTGGCAAAAGAAGTGTTGT 57.657 34.783 3.01 0.00 0.00 3.32
587 594 7.769272 TTAAGAATTGGCAAAAGAAGTGTTG 57.231 32.000 3.01 0.00 0.00 3.33
588 595 8.962884 AATTAAGAATTGGCAAAAGAAGTGTT 57.037 26.923 3.01 0.00 0.00 3.32
589 596 8.962884 AAATTAAGAATTGGCAAAAGAAGTGT 57.037 26.923 3.01 0.00 0.00 3.55
629 636 9.769093 ACGCAATCTTCAAAGTAAATACAATAC 57.231 29.630 0.00 0.00 0.00 1.89
641 648 6.835914 ACTTATTCTCACGCAATCTTCAAAG 58.164 36.000 0.00 0.00 0.00 2.77
665 672 7.233389 AGATTCAGCTAGACTTCAAGTGTTA 57.767 36.000 0.00 0.00 0.00 2.41
682 689 6.481976 ACGAGTCTGACAGTAGATAGATTCAG 59.518 42.308 10.88 0.00 33.26 3.02
684 691 6.854496 ACGAGTCTGACAGTAGATAGATTC 57.146 41.667 10.88 0.00 0.00 2.52
685 692 6.600032 ACAACGAGTCTGACAGTAGATAGATT 59.400 38.462 10.88 0.00 0.00 2.40
686 693 6.037720 CACAACGAGTCTGACAGTAGATAGAT 59.962 42.308 10.88 0.00 0.00 1.98
688 695 5.564768 CACAACGAGTCTGACAGTAGATAG 58.435 45.833 10.88 2.20 0.00 2.08
690 697 3.366476 GCACAACGAGTCTGACAGTAGAT 60.366 47.826 10.88 0.00 0.00 1.98
691 698 2.031069 GCACAACGAGTCTGACAGTAGA 60.031 50.000 10.88 0.00 0.00 2.59
695 727 1.723542 GATGCACAACGAGTCTGACAG 59.276 52.381 10.88 6.18 0.00 3.51
751 783 0.319555 AACTGTGACGTCATGGGTCG 60.320 55.000 23.12 9.02 37.22 4.79
761 793 3.047877 GGGGGCGAAACTGTGACG 61.048 66.667 0.00 3.22 0.00 4.35
783 3012 5.406767 TTGCGACGTTGTATAAGTGTTTT 57.593 34.783 4.37 0.00 0.00 2.43
787 3016 7.215568 CCTTTTATTTGCGACGTTGTATAAGTG 59.784 37.037 4.37 4.22 0.00 3.16
790 3019 7.361889 TCCTTTTATTTGCGACGTTGTATAA 57.638 32.000 4.37 4.26 0.00 0.98
791 3020 6.964741 TCCTTTTATTTGCGACGTTGTATA 57.035 33.333 4.37 0.00 0.00 1.47
792 3021 5.866335 TCCTTTTATTTGCGACGTTGTAT 57.134 34.783 4.37 0.00 0.00 2.29
795 3024 5.510323 GGTAATCCTTTTATTTGCGACGTTG 59.490 40.000 0.00 0.00 0.00 4.10
815 3044 2.853705 CTTGGTCTTTTCGGGTGGTAA 58.146 47.619 0.00 0.00 0.00 2.85
816 3045 1.543871 GCTTGGTCTTTTCGGGTGGTA 60.544 52.381 0.00 0.00 0.00 3.25
817 3046 0.822121 GCTTGGTCTTTTCGGGTGGT 60.822 55.000 0.00 0.00 0.00 4.16
818 3047 1.852067 CGCTTGGTCTTTTCGGGTGG 61.852 60.000 0.00 0.00 0.00 4.61
819 3048 1.574428 CGCTTGGTCTTTTCGGGTG 59.426 57.895 0.00 0.00 0.00 4.61
820 3049 2.258726 GCGCTTGGTCTTTTCGGGT 61.259 57.895 0.00 0.00 0.00 5.28
821 3050 2.561373 GCGCTTGGTCTTTTCGGG 59.439 61.111 0.00 0.00 0.00 5.14
822 3051 2.561373 GGCGCTTGGTCTTTTCGG 59.439 61.111 7.64 0.00 0.00 4.30
823 3052 2.561373 GGGCGCTTGGTCTTTTCG 59.439 61.111 7.64 0.00 0.00 3.46
824 3053 2.962569 GGGGCGCTTGGTCTTTTC 59.037 61.111 7.64 0.00 0.00 2.29
825 3054 2.983592 CGGGGCGCTTGGTCTTTT 60.984 61.111 7.64 0.00 0.00 2.27
826 3055 2.400269 TAACGGGGCGCTTGGTCTTT 62.400 55.000 7.64 0.00 0.00 2.52
827 3056 2.193087 ATAACGGGGCGCTTGGTCTT 62.193 55.000 7.64 0.00 0.00 3.01
828 3057 2.193087 AATAACGGGGCGCTTGGTCT 62.193 55.000 7.64 0.00 0.00 3.85
829 3058 1.747745 AATAACGGGGCGCTTGGTC 60.748 57.895 7.64 0.00 0.00 4.02
830 3059 2.043980 CAATAACGGGGCGCTTGGT 61.044 57.895 7.64 0.00 0.00 3.67
831 3060 2.798009 CAATAACGGGGCGCTTGG 59.202 61.111 7.64 0.00 0.00 3.61
832 3061 2.102161 GCAATAACGGGGCGCTTG 59.898 61.111 7.64 2.74 0.00 4.01
833 3062 3.505184 CGCAATAACGGGGCGCTT 61.505 61.111 7.64 0.00 44.49 4.68
852 3081 2.920912 TCCCGTTGACCGCTTCCT 60.921 61.111 0.00 0.00 34.38 3.36
1010 3264 1.227409 TTTGCGGCGAGACAAGACA 60.227 52.632 12.98 0.00 0.00 3.41
1096 3350 4.509737 GCGTACCTCGTGCCCTCC 62.510 72.222 0.00 0.00 42.13 4.30
1168 3422 3.627577 GCAAACCACAAGAAGAAGAGACA 59.372 43.478 0.00 0.00 0.00 3.41
1173 3427 2.544486 GGCTGCAAACCACAAGAAGAAG 60.544 50.000 0.50 0.00 0.00 2.85
1174 3428 1.408702 GGCTGCAAACCACAAGAAGAA 59.591 47.619 0.50 0.00 0.00 2.52
1181 3435 3.215568 CACCGGCTGCAAACCACA 61.216 61.111 0.00 0.00 0.00 4.17
1201 3455 2.338257 CGCCGCACCAAAACCAAT 59.662 55.556 0.00 0.00 0.00 3.16
1214 3468 3.222855 ATCTCTCTCAGGCCGCCG 61.223 66.667 3.05 0.00 0.00 6.46
1424 3678 2.124942 GCCTTGGCCTTCTCCTCG 60.125 66.667 3.32 0.00 0.00 4.63
1429 3683 2.273449 CATCCGCCTTGGCCTTCT 59.727 61.111 3.32 0.00 37.80 2.85
1757 4018 1.218047 CCCTTCATCGCCGTCTTCA 59.782 57.895 0.00 0.00 0.00 3.02
1760 4021 1.079127 CAACCCTTCATCGCCGTCT 60.079 57.895 0.00 0.00 0.00 4.18
1860 4121 6.829811 TCATCTGCATTTTCATATTCCTCACA 59.170 34.615 0.00 0.00 0.00 3.58
2033 4294 7.096551 TCATCATCAAACGAACTTCAGTGATA 58.903 34.615 0.00 0.00 0.00 2.15
2132 4393 5.500234 ACCATCGGATTTTTCAGATCTGAA 58.500 37.500 30.05 30.05 46.72 3.02
2233 4494 8.764524 AAACAGTTATGTACTTGCAACAAAAA 57.235 26.923 0.00 0.00 39.29 1.94
2314 4575 8.028354 CAGATATTGCCAACAAAAAGTGTATCA 58.972 33.333 0.00 0.00 40.60 2.15
2402 4663 4.537135 ATTTCTTACACCGAGAAGCAGA 57.463 40.909 0.00 0.00 34.84 4.26
2528 4789 2.936498 CTCAAGTAAAGCATACCCACGG 59.064 50.000 0.00 0.00 0.00 4.94
2630 4891 3.086282 GGAATCGGCAAAGGAAACCTTA 58.914 45.455 3.40 0.00 43.92 2.69
2654 4915 4.445453 TCATTTCATCATCGACTTCAGGG 58.555 43.478 0.00 0.00 0.00 4.45
2702 4963 1.229131 TGGGACGGAGGGAGTACTAT 58.771 55.000 0.00 0.00 0.00 2.12
2703 4964 1.002069 TTGGGACGGAGGGAGTACTA 58.998 55.000 0.00 0.00 0.00 1.82
2704 4965 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
2705 4966 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
2706 4967 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2707 4968 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
2708 4969 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2709 4970 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2710 4971 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
2711 4972 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2712 4973 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
2713 4974 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
2714 4975 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
2715 4976 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
2716 4977 7.923414 ATAGTTGAGACACTTATTTTGGGAC 57.077 36.000 0.00 0.00 0.00 4.46
2717 4978 8.822805 ACTATAGTTGAGACACTTATTTTGGGA 58.177 33.333 0.00 0.00 0.00 4.37
2723 4984 9.134055 GGGAGTACTATAGTTGAGACACTTATT 57.866 37.037 11.40 0.00 0.00 1.40
2724 4985 8.504409 AGGGAGTACTATAGTTGAGACACTTAT 58.496 37.037 11.40 0.00 0.00 1.73
2725 4986 7.870027 AGGGAGTACTATAGTTGAGACACTTA 58.130 38.462 11.40 0.00 0.00 2.24
2726 4987 6.733509 AGGGAGTACTATAGTTGAGACACTT 58.266 40.000 11.40 0.00 0.00 3.16
2727 4988 6.330178 AGGGAGTACTATAGTTGAGACACT 57.670 41.667 11.40 7.07 0.00 3.55
2728 4989 5.532032 GGAGGGAGTACTATAGTTGAGACAC 59.468 48.000 11.40 1.79 0.00 3.67
2729 4990 5.686913 CGGAGGGAGTACTATAGTTGAGACA 60.687 48.000 11.40 0.00 0.00 3.41
2730 4991 4.756135 CGGAGGGAGTACTATAGTTGAGAC 59.244 50.000 11.40 2.95 0.00 3.36
2731 4992 4.411540 ACGGAGGGAGTACTATAGTTGAGA 59.588 45.833 11.40 0.00 0.00 3.27
2732 4993 4.716794 ACGGAGGGAGTACTATAGTTGAG 58.283 47.826 11.40 0.00 0.00 3.02
2733 4994 4.785346 ACGGAGGGAGTACTATAGTTGA 57.215 45.455 11.40 0.00 0.00 3.18
2734 4995 4.277921 GGAACGGAGGGAGTACTATAGTTG 59.722 50.000 11.40 0.00 0.00 3.16
2735 4996 4.468713 GGAACGGAGGGAGTACTATAGTT 58.531 47.826 11.40 0.00 0.00 2.24
2736 4997 4.097551 GGAACGGAGGGAGTACTATAGT 57.902 50.000 10.87 10.87 0.00 2.12
2758 5019 6.457851 AACTAAAACCACGACGAGTAAATC 57.542 37.500 0.00 0.00 0.00 2.17
2759 5020 6.849588 AAACTAAAACCACGACGAGTAAAT 57.150 33.333 0.00 0.00 0.00 1.40
2760 5021 7.763172 TTAAACTAAAACCACGACGAGTAAA 57.237 32.000 0.00 0.00 0.00 2.01
2761 5022 7.763172 TTTAAACTAAAACCACGACGAGTAA 57.237 32.000 0.00 0.00 0.00 2.24
2762 5023 7.945033 ATTTAAACTAAAACCACGACGAGTA 57.055 32.000 0.00 0.00 0.00 2.59
2763 5024 6.849588 ATTTAAACTAAAACCACGACGAGT 57.150 33.333 0.00 0.00 0.00 4.18
2764 5025 7.851963 TCAAATTTAAACTAAAACCACGACGAG 59.148 33.333 0.00 0.00 0.00 4.18
2765 5026 7.692088 TCAAATTTAAACTAAAACCACGACGA 58.308 30.769 0.00 0.00 0.00 4.20
2766 5027 7.895582 TCAAATTTAAACTAAAACCACGACG 57.104 32.000 0.00 0.00 0.00 5.12
2767 5028 9.292846 AGTTCAAATTTAAACTAAAACCACGAC 57.707 29.630 4.83 0.00 34.05 4.34
2778 5039 9.292846 GTCGTGGTTTTAGTTCAAATTTAAACT 57.707 29.630 11.45 11.45 39.07 2.66
2779 5040 8.254470 CGTCGTGGTTTTAGTTCAAATTTAAAC 58.746 33.333 0.00 0.00 0.00 2.01
2780 5041 8.180267 TCGTCGTGGTTTTAGTTCAAATTTAAA 58.820 29.630 0.00 0.00 0.00 1.52
2781 5042 7.692088 TCGTCGTGGTTTTAGTTCAAATTTAA 58.308 30.769 0.00 0.00 0.00 1.52
2782 5043 7.011295 ACTCGTCGTGGTTTTAGTTCAAATTTA 59.989 33.333 0.00 0.00 0.00 1.40
2783 5044 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
2784 5045 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
2785 5046 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
2786 5047 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
2787 5048 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
2788 5049 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
2789 5050 5.888412 TTTACTCGTCGTGGTTTTAGTTC 57.112 39.130 0.00 0.00 0.00 3.01
2790 5051 5.117592 CGATTTACTCGTCGTGGTTTTAGTT 59.882 40.000 0.00 0.00 42.56 2.24
2791 5052 4.618489 CGATTTACTCGTCGTGGTTTTAGT 59.382 41.667 0.00 0.00 42.56 2.24
2792 5053 4.030977 CCGATTTACTCGTCGTGGTTTTAG 59.969 45.833 0.00 0.00 46.18 1.85
2793 5054 3.919804 CCGATTTACTCGTCGTGGTTTTA 59.080 43.478 0.00 0.00 46.18 1.52
2794 5055 2.733026 CCGATTTACTCGTCGTGGTTTT 59.267 45.455 0.00 0.00 46.18 2.43
2795 5056 2.030007 TCCGATTTACTCGTCGTGGTTT 60.030 45.455 0.00 0.00 46.18 3.27
2796 5057 1.541147 TCCGATTTACTCGTCGTGGTT 59.459 47.619 0.00 0.00 46.18 3.67
2797 5058 1.167851 TCCGATTTACTCGTCGTGGT 58.832 50.000 0.00 0.00 46.18 4.16
2798 5059 1.916000 GTTCCGATTTACTCGTCGTGG 59.084 52.381 0.00 0.00 46.18 4.94
2799 5060 1.576246 CGTTCCGATTTACTCGTCGTG 59.424 52.381 0.00 0.00 46.18 4.35
2800 5061 1.466360 CCGTTCCGATTTACTCGTCGT 60.466 52.381 0.00 0.00 46.18 4.34
2801 5062 1.186030 CCGTTCCGATTTACTCGTCG 58.814 55.000 0.00 0.00 46.18 5.12
2802 5063 2.448219 CTCCGTTCCGATTTACTCGTC 58.552 52.381 0.00 0.00 46.18 4.20
2803 5064 1.133790 CCTCCGTTCCGATTTACTCGT 59.866 52.381 0.00 0.00 46.18 4.18
2805 5066 1.753073 TCCCTCCGTTCCGATTTACTC 59.247 52.381 0.00 0.00 0.00 2.59
2806 5067 1.755380 CTCCCTCCGTTCCGATTTACT 59.245 52.381 0.00 0.00 0.00 2.24
2807 5068 1.479730 ACTCCCTCCGTTCCGATTTAC 59.520 52.381 0.00 0.00 0.00 2.01
2808 5069 1.856629 ACTCCCTCCGTTCCGATTTA 58.143 50.000 0.00 0.00 0.00 1.40
2809 5070 1.479730 GTACTCCCTCCGTTCCGATTT 59.520 52.381 0.00 0.00 0.00 2.17
2810 5071 1.109609 GTACTCCCTCCGTTCCGATT 58.890 55.000 0.00 0.00 0.00 3.34
2811 5072 0.033796 TGTACTCCCTCCGTTCCGAT 60.034 55.000 0.00 0.00 0.00 4.18
2812 5073 0.251297 TTGTACTCCCTCCGTTCCGA 60.251 55.000 0.00 0.00 0.00 4.55
2813 5074 0.108945 GTTGTACTCCCTCCGTTCCG 60.109 60.000 0.00 0.00 0.00 4.30
2814 5075 1.264295 AGTTGTACTCCCTCCGTTCC 58.736 55.000 0.00 0.00 0.00 3.62
2815 5076 3.064931 CAAAGTTGTACTCCCTCCGTTC 58.935 50.000 0.00 0.00 0.00 3.95
2816 5077 2.436911 ACAAAGTTGTACTCCCTCCGTT 59.563 45.455 0.00 0.00 40.16 4.44
2817 5078 2.044758 ACAAAGTTGTACTCCCTCCGT 58.955 47.619 0.00 0.00 40.16 4.69
2818 5079 2.833631 ACAAAGTTGTACTCCCTCCG 57.166 50.000 0.00 0.00 40.16 4.63
2851 5112 9.590451 CGTCCCATAATAAGTGTCTTAACTTTA 57.410 33.333 0.00 0.00 40.77 1.85
2852 5113 7.551617 CCGTCCCATAATAAGTGTCTTAACTTT 59.448 37.037 0.00 0.00 40.77 2.66
2853 5114 7.046033 CCGTCCCATAATAAGTGTCTTAACTT 58.954 38.462 0.00 0.00 42.89 2.66
2854 5115 6.381994 TCCGTCCCATAATAAGTGTCTTAACT 59.618 38.462 0.00 0.00 0.00 2.24
2855 5116 6.576185 TCCGTCCCATAATAAGTGTCTTAAC 58.424 40.000 0.00 0.00 0.00 2.01
2856 5117 6.183360 CCTCCGTCCCATAATAAGTGTCTTAA 60.183 42.308 0.00 0.00 0.00 1.85
2857 5118 5.303589 CCTCCGTCCCATAATAAGTGTCTTA 59.696 44.000 0.00 0.00 0.00 2.10
2858 5119 4.101119 CCTCCGTCCCATAATAAGTGTCTT 59.899 45.833 0.00 0.00 0.00 3.01
2859 5120 3.641906 CCTCCGTCCCATAATAAGTGTCT 59.358 47.826 0.00 0.00 0.00 3.41
2860 5121 3.244112 CCCTCCGTCCCATAATAAGTGTC 60.244 52.174 0.00 0.00 0.00 3.67
2861 5122 2.704065 CCCTCCGTCCCATAATAAGTGT 59.296 50.000 0.00 0.00 0.00 3.55
2862 5123 2.969950 TCCCTCCGTCCCATAATAAGTG 59.030 50.000 0.00 0.00 0.00 3.16
2863 5124 3.240302 CTCCCTCCGTCCCATAATAAGT 58.760 50.000 0.00 0.00 0.00 2.24
2864 5125 3.240302 ACTCCCTCCGTCCCATAATAAG 58.760 50.000 0.00 0.00 0.00 1.73
2865 5126 3.339713 ACTCCCTCCGTCCCATAATAA 57.660 47.619 0.00 0.00 0.00 1.40
2866 5127 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
2867 5128 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
2868 5129 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
2869 5130 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
2870 5131 0.338814 AACTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
2871 5132 0.115745 AAACTACTCCCTCCGTCCCA 59.884 55.000 0.00 0.00 0.00 4.37
2872 5133 1.273759 AAAACTACTCCCTCCGTCCC 58.726 55.000 0.00 0.00 0.00 4.46
2873 5134 3.513119 ACTTAAAACTACTCCCTCCGTCC 59.487 47.826 0.00 0.00 0.00 4.79
2874 5135 4.021632 ACACTTAAAACTACTCCCTCCGTC 60.022 45.833 0.00 0.00 0.00 4.79
2875 5136 3.899980 ACACTTAAAACTACTCCCTCCGT 59.100 43.478 0.00 0.00 0.00 4.69
2876 5137 4.021719 TGACACTTAAAACTACTCCCTCCG 60.022 45.833 0.00 0.00 0.00 4.63
2877 5138 5.011840 AGTGACACTTAAAACTACTCCCTCC 59.988 44.000 1.07 0.00 0.00 4.30
2878 5139 6.099159 AGTGACACTTAAAACTACTCCCTC 57.901 41.667 1.07 0.00 0.00 4.30
2879 5140 6.496144 AAGTGACACTTAAAACTACTCCCT 57.504 37.500 19.28 0.00 36.52 4.20
2880 5141 7.563888 AAAAGTGACACTTAAAACTACTCCC 57.436 36.000 20.85 0.00 37.47 4.30
2908 5169 1.228737 GCCACTTTAAGGGGGCACA 60.229 57.895 24.98 0.00 45.70 4.57
2909 5170 3.694746 GCCACTTTAAGGGGGCAC 58.305 61.111 24.98 0.00 45.70 5.01
2911 5172 0.614697 ACATGCCACTTTAAGGGGGC 60.615 55.000 23.38 23.38 39.88 5.80
2913 5174 3.697166 ACTAACATGCCACTTTAAGGGG 58.303 45.455 9.26 9.26 43.37 4.79
2920 5181 9.691362 CAAAATACTTTTACTAACATGCCACTT 57.309 29.630 0.00 0.00 0.00 3.16
2921 5182 9.073475 TCAAAATACTTTTACTAACATGCCACT 57.927 29.630 0.00 0.00 0.00 4.00
2922 5183 9.855021 ATCAAAATACTTTTACTAACATGCCAC 57.145 29.630 0.00 0.00 0.00 5.01
2923 5184 9.853555 CATCAAAATACTTTTACTAACATGCCA 57.146 29.630 0.00 0.00 0.00 4.92
2925 5186 9.573133 AGCATCAAAATACTTTTACTAACATGC 57.427 29.630 0.00 0.00 0.00 4.06
2936 5200 6.815089 TGACCAAACAGCATCAAAATACTTT 58.185 32.000 0.00 0.00 0.00 2.66
2949 5213 1.068748 CAGAGTGCATGACCAAACAGC 60.069 52.381 0.00 0.00 0.00 4.40
2962 5226 1.814586 CTAGCAGCTGCCAGAGTGC 60.815 63.158 34.39 8.79 43.38 4.40
3097 5364 3.252974 ACACGATCTTCTTCCCATGAC 57.747 47.619 0.00 0.00 0.00 3.06
3178 5445 2.064573 AATCTTTTCTTTTGGCCGCG 57.935 45.000 0.00 0.00 0.00 6.46
3280 5547 3.618150 CAGTTGGAAAACAAACCTTGCTG 59.382 43.478 0.00 0.00 41.58 4.41
3393 5660 5.754406 TCACTTTTGCCTGAATCACAAAATG 59.246 36.000 10.74 10.90 41.11 2.32
3494 5761 2.829003 CCGCCTCGAGGAGCACTA 60.829 66.667 35.69 0.00 37.39 2.74
3509 5776 1.078708 AGTGTATGGGAAACGGCCG 60.079 57.895 26.86 26.86 0.00 6.13
3566 5833 1.000052 GGAGGTAAGCGAGTATCAGGC 60.000 57.143 0.00 0.00 33.17 4.85
3745 6012 6.488006 AGAAATTTGATGCGGCTATAGTTGAT 59.512 34.615 0.00 0.00 0.00 2.57
3752 6019 5.764686 TGTATGAGAAATTTGATGCGGCTAT 59.235 36.000 0.00 0.00 0.00 2.97
3780 6050 2.550830 AAACAGGAGCTGTACACAGG 57.449 50.000 11.18 0.00 44.62 4.00
3878 6148 4.318332 TGGAACTCTTGCACTGTAATCAG 58.682 43.478 0.00 0.00 46.18 2.90
3879 6149 4.202357 ACTGGAACTCTTGCACTGTAATCA 60.202 41.667 0.00 0.00 0.00 2.57
3880 6150 4.319177 ACTGGAACTCTTGCACTGTAATC 58.681 43.478 0.00 0.00 0.00 1.75
3881 6151 4.357918 ACTGGAACTCTTGCACTGTAAT 57.642 40.909 0.00 0.00 0.00 1.89
3882 6152 3.838244 ACTGGAACTCTTGCACTGTAA 57.162 42.857 0.00 0.00 0.00 2.41
3903 6173 0.899019 TGTAAGTGTGGCGCCTATCA 59.101 50.000 29.70 20.40 0.00 2.15
3948 6218 2.178984 AGGAGCTAGGTCTGAATAGGCT 59.821 50.000 20.67 4.75 0.00 4.58
4014 6284 4.038042 CGGTCAATCTTCTCTACATAGCCA 59.962 45.833 0.00 0.00 0.00 4.75
4167 6437 6.176183 ACAATAGTCAGGTTGATTGAGGAAG 58.824 40.000 0.00 0.00 34.18 3.46
4176 6446 6.883756 TGCATCATTAACAATAGTCAGGTTGA 59.116 34.615 0.00 0.00 0.00 3.18
4177 6447 7.087409 TGCATCATTAACAATAGTCAGGTTG 57.913 36.000 0.00 0.00 0.00 3.77
4354 6625 7.539366 CCAAGACGTTCTCTAAAACAAACAAAA 59.461 33.333 0.00 0.00 0.00 2.44
4547 6818 9.739276 AGAAAGGTATCATGACAAATACTCAAA 57.261 29.630 0.00 0.00 0.00 2.69
4548 6819 9.739276 AAGAAAGGTATCATGACAAATACTCAA 57.261 29.630 0.00 0.00 0.00 3.02
4549 6820 9.166173 CAAGAAAGGTATCATGACAAATACTCA 57.834 33.333 0.00 0.00 0.00 3.41
4550 6821 9.383519 TCAAGAAAGGTATCATGACAAATACTC 57.616 33.333 0.00 0.00 0.00 2.59
4551 6822 9.911788 ATCAAGAAAGGTATCATGACAAATACT 57.088 29.630 0.00 0.00 30.68 2.12
4612 6883 1.134995 CAGTGCTCGCAGAACCTATGA 60.135 52.381 0.00 0.00 34.09 2.15
4613 6884 1.284657 CAGTGCTCGCAGAACCTATG 58.715 55.000 0.00 0.00 34.09 2.23
4614 6885 0.176680 CCAGTGCTCGCAGAACCTAT 59.823 55.000 0.00 0.00 34.09 2.57
4649 6920 6.870965 AGTCTGCACTGTAATTTGAAGAGTAG 59.129 38.462 0.00 0.00 0.00 2.57
4733 7007 4.890158 TTGACTTGGAGAGAGCAATACA 57.110 40.909 0.00 0.00 0.00 2.29
4768 7042 7.994425 TCAAGCTTACAAATATTTCACTGGA 57.006 32.000 0.00 0.00 0.00 3.86
4783 7057 5.423015 TCCTTCACAGATGATCAAGCTTAC 58.577 41.667 0.00 0.00 33.85 2.34
4793 7067 5.935945 TGGTAGTTTTTCCTTCACAGATGA 58.064 37.500 0.00 0.00 0.00 2.92
4824 7098 9.049523 TCTAGCAGTATCAATTTGATGATGTTC 57.950 33.333 19.81 8.06 40.21 3.18
4828 7102 9.788889 TGAATCTAGCAGTATCAATTTGATGAT 57.211 29.630 19.81 10.19 42.52 2.45
4829 7103 9.617523 TTGAATCTAGCAGTATCAATTTGATGA 57.382 29.630 19.81 8.53 37.70 2.92
4883 7157 8.200792 TGAAACAAGGTTGCTTTACACAAATAT 58.799 29.630 0.00 0.00 0.00 1.28
4893 7167 4.751767 TTCCATGAAACAAGGTTGCTTT 57.248 36.364 0.00 0.00 0.00 3.51
4918 7192 9.018582 TGACCAAACAATAACATGTTGATCATA 57.981 29.630 21.42 0.00 42.49 2.15
4920 7194 7.282332 TGACCAAACAATAACATGTTGATCA 57.718 32.000 21.42 2.75 42.49 2.92
4934 7208 1.006043 TCCACCAACCTGACCAAACAA 59.994 47.619 0.00 0.00 0.00 2.83
4951 7225 6.992123 AGTAATGCGATGAATATGAACTTCCA 59.008 34.615 0.00 0.00 0.00 3.53
4954 7228 6.146184 CCGAGTAATGCGATGAATATGAACTT 59.854 38.462 0.00 0.00 0.00 2.66
5118 7393 0.820891 AGCGCAATGATGGGGATGAC 60.821 55.000 11.47 0.00 39.74 3.06
5597 7872 0.967380 GCTGGGTCATCAAAGGTGGG 60.967 60.000 0.00 0.00 0.00 4.61
5633 7908 3.308323 CGCTCACTTCTAAGGCTTCATTC 59.692 47.826 1.30 0.00 0.00 2.67
5840 8115 5.351740 GGTGAAAGAACTACTTGAGCCATAC 59.648 44.000 0.00 0.00 38.98 2.39
5907 8182 3.369787 CCATCCAGTCATGTAGCTGTGAA 60.370 47.826 0.00 0.00 0.00 3.18
5978 8254 7.756722 GCTCAGTGTTGATAATGCTTGTTAAAT 59.243 33.333 0.00 0.00 31.68 1.40
6079 8355 4.998671 TCTTCAAAACTTGCAACCATCA 57.001 36.364 0.00 0.00 0.00 3.07
6213 8489 8.861086 CGAGGGCCTAAGTGTATCATATATAAT 58.139 37.037 5.73 0.00 0.00 1.28
6214 8490 7.837689 ACGAGGGCCTAAGTGTATCATATATAA 59.162 37.037 5.73 0.00 0.00 0.98
6215 8491 7.351952 ACGAGGGCCTAAGTGTATCATATATA 58.648 38.462 5.73 0.00 0.00 0.86
6216 8492 6.195700 ACGAGGGCCTAAGTGTATCATATAT 58.804 40.000 5.73 0.00 0.00 0.86
6217 8493 5.577100 ACGAGGGCCTAAGTGTATCATATA 58.423 41.667 5.73 0.00 0.00 0.86
6218 8494 4.417437 ACGAGGGCCTAAGTGTATCATAT 58.583 43.478 5.73 0.00 0.00 1.78
6219 8495 3.840991 ACGAGGGCCTAAGTGTATCATA 58.159 45.455 5.73 0.00 0.00 2.15
6220 8496 2.679082 ACGAGGGCCTAAGTGTATCAT 58.321 47.619 5.73 0.00 0.00 2.45
6221 8497 2.154567 ACGAGGGCCTAAGTGTATCA 57.845 50.000 5.73 0.00 0.00 2.15
6222 8498 2.822764 CAACGAGGGCCTAAGTGTATC 58.177 52.381 5.73 0.00 0.00 2.24
6223 8499 1.134491 GCAACGAGGGCCTAAGTGTAT 60.134 52.381 5.73 0.00 0.00 2.29
6224 8500 0.248289 GCAACGAGGGCCTAAGTGTA 59.752 55.000 5.73 0.00 0.00 2.90
6225 8501 1.003718 GCAACGAGGGCCTAAGTGT 60.004 57.895 5.73 0.00 0.00 3.55
6226 8502 2.100631 CGCAACGAGGGCCTAAGTG 61.101 63.158 5.73 5.67 0.00 3.16
6227 8503 1.252904 TACGCAACGAGGGCCTAAGT 61.253 55.000 5.73 7.26 0.00 2.24
6386 8855 2.826128 ACGCAGAACCTCTTAGTGATCA 59.174 45.455 0.00 0.00 0.00 2.92
6557 9032 7.893124 AAATGCATAACTTTGATCTCCAGAT 57.107 32.000 0.00 0.00 37.51 2.90
6558 9033 7.707624 AAAATGCATAACTTTGATCTCCAGA 57.292 32.000 0.00 0.00 0.00 3.86
6559 9034 7.277098 CCAAAAATGCATAACTTTGATCTCCAG 59.723 37.037 21.54 7.17 31.77 3.86
6560 9035 7.098477 CCAAAAATGCATAACTTTGATCTCCA 58.902 34.615 21.54 0.00 31.77 3.86
6561 9036 7.099120 ACCAAAAATGCATAACTTTGATCTCC 58.901 34.615 21.54 0.00 31.77 3.71
6562 9037 8.437742 CAACCAAAAATGCATAACTTTGATCTC 58.562 33.333 21.54 0.00 31.77 2.75
6563 9038 7.388500 CCAACCAAAAATGCATAACTTTGATCT 59.612 33.333 21.54 9.26 31.77 2.75
6564 9039 7.520686 CCAACCAAAAATGCATAACTTTGATC 58.479 34.615 21.54 0.00 31.77 2.92
6565 9040 6.072563 GCCAACCAAAAATGCATAACTTTGAT 60.073 34.615 21.54 9.17 31.77 2.57
6566 9041 5.238214 GCCAACCAAAAATGCATAACTTTGA 59.762 36.000 21.54 0.00 31.77 2.69
6567 9042 5.239087 AGCCAACCAAAAATGCATAACTTTG 59.761 36.000 16.38 16.38 0.00 2.77
6568 9043 5.375773 AGCCAACCAAAAATGCATAACTTT 58.624 33.333 0.00 0.00 0.00 2.66
6569 9044 4.971939 AGCCAACCAAAAATGCATAACTT 58.028 34.783 0.00 0.00 0.00 2.66
6570 9045 4.622260 AGCCAACCAAAAATGCATAACT 57.378 36.364 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.